RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy176
         (101 letters)



>d1br2a1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain
          {Chicken (Gallus gallus), pectoral muscle [TaxId:
          9031]}
          Length = 46

 Score = 34.6 bits (80), Expect = 1e-04
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 44 VWVPDPADGFVLGRILDLGMDEVTVQPLDSKK 75
          VWVP    GF    I +   DEVTV+  ++ K
Sbjct: 2  VWVPSEKHGFEAASIKEEKGDEVTVELQENGK 33


>d1kk8a1 b.34.3.1 (A:29-76) Myosin S1 fragment, N-terminal domain
          {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 48

 Score = 33.5 bits (77), Expect = 3e-04
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 44 VWVPDPADGFVLGRILDLGMDEVTVQPLDSKK 75
           WVPD  +GF    I     DE+TV+ +    
Sbjct: 6  CWVPDEKEGFASAEIQSSKGDEITVKIVADSS 37


>d2mysa1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain
          {Chicken (Gallus gallus), pectoral muscle [TaxId:
          9031]}
          Length = 46

 Score = 32.7 bits (75), Expect = 7e-04
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 44 VWVPDPADGFVLGRILDLGMDEVTVQPLDSKK 75
          V+V  P   FV G I      +VTV+    + 
Sbjct: 5  VFVVHPKQSFVKGTIQSKEGGKVTVKTEGGET 36


>g1ko6.1 b.119.1.1 (A:,B:) C-terminal autoproteolytic domain of
          nucleoporin nup98 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 158

 Score = 24.4 bits (53), Expect = 2.7
 Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 2/33 (6%)

Query: 47 PDPAD--GFVLGRILDLGMDEVTVQPLDSKKPK 77
              +     L  I+ +   EV V   D++KP 
Sbjct: 50 EGDVNLTNLNLDDIVHIRRKEVVVYLDDNQKPP 82


>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon
          Methanococcus jannaschii [TaxId: 2190]}
          Length = 163

 Score = 23.9 bits (51), Expect = 3.6
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 52 GF-VLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHD 92
          GF V G  L    D + V+ +D K+         + T  + +
Sbjct: 17 GFDVFGLCLKEPYDVIEVEAIDDKEIIIEVDDKNIPTDPDKN 58


>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus
           scrofa), cytosolic form [TaxId: 9823]}
          Length = 412

 Score = 23.4 bits (49), Expect = 8.4
 Identities = 6/51 (11%), Positives = 15/51 (29%)

Query: 27  FESVVYKFKPYLMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPK 77
            E +   +     ++  V+V  P      G     G  ++        + +
Sbjct: 116 AEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKR 166


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 378,649
Number of extensions: 15793
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 10
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.1 bits)