BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1760
(793 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E3X|A Chain A, The C-Terminal Part Of Bipa Protein From Vibrio
Parahaemolyticus Rimd 2210633
Length = 332
Score = 296 bits (758), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 148/282 (52%), Positives = 196/282 (69%), Gaps = 4/282 (1%)
Query: 483 TGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLD 542
TG+ E+ I TIC + LP L++DEPT+T F VN SP AG EG F+T+R I RL+
Sbjct: 4 TGLGELKISDTICAQNAVEALPALSVDEPTVTXTFQVNTSPFAGXEGXFVTSRNILERLE 63
Query: 543 HEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGE 602
E+ +N+ LRV Q D + VSGRGELHL+ILIEN RREG+EL+VSRP VI +G+
Sbjct: 64 KELVHNVALRVEQTDDPDK-FRVSGRGELHLSILIENXRREGFELAVSRPEVIIXEEDGQ 122
Query: 603 LYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEF 662
L EP+E + +D+ E +QG I + + R G+L + + K RVR ++ PSRGLIGFQ EF
Sbjct: 123 LXEPFETVTIDVXEEHQGGIXENIGLRXGELXDXAPDGKGRVRXDFIXPSRGLIGFQTEF 182
Query: 663 ITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLWKLQDRGRLFI 722
TLT G+GL+ H F+ Y P ++G+R NGVLI+ +GKA+ +L+ LQ+RGRLFI
Sbjct: 183 XTLTSGSGLLYHTFDHYGPHXGG---NIGQRVNGVLIANAAGKALTNALFNLQERGRLFI 239
Query: 723 NHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEA 764
H VYEG +IGIHSRDNDL VN +K KQLTN+R+SG+D+A
Sbjct: 240 GHGVEVYEGXVIGIHSRDNDLTVNALKGKQLTNVRASGTDDA 281
>pdb|1R3F|A Chain A, Crystal Structure Of Trna Pseudouridine Synthase Trub And
Its Rna Complex: Rna-Protein Recognition Through A
Combination Of Rigid Docking And Induced Fit
Length = 314
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 125/199 (62%), Gaps = 1/199 (0%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP G+SSN+AL+K+K + NA + G+TG LDP ATG+LP+C GEATKFS YL ++DK Y
Sbjct: 19 KPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRV 78
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
I LG T+T D +G+I++ + + S E + L F G I QIP MYSALKY+G LY
Sbjct: 79 IARLGQRTDTSDADGQIVE-ERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLY 137
Query: 137 KYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
+YAR G L L IHCSKGTYIR + +D+G+ LGCGAH+
Sbjct: 138 EYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHV 197
Query: 197 KYLRRIGIDKLTLDKNIAI 215
YLRR+ + K +++ + +
Sbjct: 198 IYLRRLAVSKYPVERMVTL 216
>pdb|1K8W|A Chain A, Crystal Structure Of The E. Coli Pseudouridine Synthase
Trub Bound To A T Stem-Loop Rna
Length = 327
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 125/199 (62%), Gaps = 1/199 (0%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP G+SSN+AL+K+K + NA + G+TG LDP ATG+LP+C GEATKFS YL ++DK Y
Sbjct: 32 KPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRV 91
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
I LG T+T D +G+I++ + + S E + L F G I QIP MYSALKY+G LY
Sbjct: 92 IARLGQRTDTSDADGQIVE-ERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLY 150
Query: 137 KYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
+YAR G L L IHCSKGTYIR + +D+G+ LGCGAH+
Sbjct: 151 EYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHV 210
Query: 197 KYLRRIGIDKLTLDKNIAI 215
YLRR+ + K +++ + +
Sbjct: 211 IYLRRLAVSKYPVERMVTL 229
>pdb|1ZL3|A Chain A, Coupling Of Active Site Motions And Rna Binding
Length = 327
Score = 185 bits (470), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/199 (45%), Positives = 125/199 (62%), Gaps = 1/199 (0%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP G+SSN+AL+K+K + NA + G+TG L+P ATG+LP+C GEATKFS YL ++DK Y
Sbjct: 32 KPQGMSSNDALQKVKRIYNANRAGHTGALNPLATGMLPICLGEATKFSQYLLDSDKRYRV 91
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
I LG T+T D +G+I++ + + S E + L F G I QIP MYSALKY+G LY
Sbjct: 92 IARLGQRTDTSDADGQIVE-ERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLY 150
Query: 137 KYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
+YAR G L L IHCSKGTYIR + +D+G+ LGCGAH+
Sbjct: 151 EYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHV 210
Query: 197 KYLRRIGIDKLTLDKNIAI 215
YLRR+ + K +++ + +
Sbjct: 211 IYLRRLAVSKYPVERMVTL 229
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 134/508 (26%), Positives = 222/508 (43%), Gaps = 69/508 (13%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
+N IIAHVDHGK+TL D LL +G + + +++D+ ++E+ERGIT+ + + Y
Sbjct: 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREK-REQLLDTLDVERERGITVKMQAVRMFY 65
Query: 271 -----NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 325
N ++++IDTPGH DF EV R L+ + LLLIDA +G QT KA++
Sbjct: 66 KAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQD 125
Query: 326 FKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQ 385
I V+NKID +A VD +++ + + I SA G E
Sbjct: 126 LVIIPVINKIDLPSAD----VDRVKKQIEEVLGLDPE---EAILASAKEGIGIEE----- 173
Query: 386 GNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 445
+ EAI+ +P K + PL+ I Y Y G + RI G +K +++M
Sbjct: 174 -----ILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLM 228
Query: 446 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITG----IEEICIGSTICDPSKPN 501
+ + Q D++ +GD+ I + +I IG TI P
Sbjct: 229 STGKEYEVTEVGAQTPKMTKFDKL-----SAGDVGYIAASIKDVRDIRIGDTITHAKNPT 283
Query: 502 GLPMLNIDEPTLTINFMVNNSPLAG-REGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDD 560
P+ +P + + AG + T ++++ L+ N+ + V + +
Sbjct: 284 KEPVPGF-QPAKPMVY-------AGIYPAEDTTYEELRDALEKYAINDAAI-VYEPESSP 334
Query: 561 SI---YEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFKTL----------------- 599
++ + V G LH+ I+ E + RE G ++ + P VI++
Sbjct: 335 ALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTAPNVIYRVKKKFTDEVIEVRNPMDFP 394
Query: 600 -NGELYEPYENLFVDIEEINQ----GIIMQKLNYRGGDLKNIEINEKERVRLEYRIP-SR 653
N L E E FV + I G I+Q + G KN+ + V LEY +P S
Sbjct: 395 DNAGLIEYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNTVYLEYEMPLSE 454
Query: 654 GLIGFQNEFITLTRGTGLISHVFEEYAP 681
++ F ++ +++RG + F Y P
Sbjct: 455 IIVDFHDKIKSISRGFASYDYEFIGYRP 482
>pdb|1SGV|A Chain A, Structure Of Trna Psi55 Pseudouridine Synthase (Trub)
pdb|1SGV|B Chain B, Structure Of Trna Psi55 Pseudouridine Synthase (Trub)
Length = 316
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 109/216 (50%), Gaps = 12/216 (5%)
Query: 3 LPSISPVSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATK 62
+ + P VVI K P G++S++ + + + + ++VG+ GTLDP ATG+L + ATK
Sbjct: 1 MSATGPGIVVIDK--PAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATK 58
Query: 63 FSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPN---SIEIIEKILINFHGKIS 119
L+ A K Y A I LG TT T D EG+++ +++P +IE I+ + G+I
Sbjct: 59 ILGLLTAAPKSYAATIRLGQTTSTEDAEGQVL---QSVPAKHLTIEAIDAAMERLRGEIR 115
Query: 120 QIPPMYSALKYKGIPLYKYARSGXXXXXXXX----XXXXXXXXXXXXXXPYLTLRIHCSK 175
Q+P SA+K G Y+ AR G + + I CS
Sbjct: 116 QVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSS 175
Query: 176 GTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDK 211
GTYIR L+ D+G LG G H+ LRR + + LD+
Sbjct: 176 GTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQ 211
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 130/507 (25%), Positives = 213/507 (42%), Gaps = 67/507 (13%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
+N IIAHVDHGK+TL D LL +G + + +++D+ ++E+ERGIT+ + Y
Sbjct: 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREK-REQLLDTLDVERERGITVKXQAVRXFY 65
Query: 271 -----NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 325
N ++++IDTPGH DF EV R L+ + LLLIDA +G QT KA++
Sbjct: 66 KAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQD 125
Query: 326 FKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQ 385
I V+NKID +A VD +++ + + I SA G E
Sbjct: 126 LVIIPVINKIDLPSAD----VDRVKKQIEEVLGLDPE---EAILASAKEGIGIEE----- 173
Query: 386 GNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 445
+ EAI+ +P K + PL+ I Y Y G + RI G +K + +
Sbjct: 174 -----ILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIXLX 228
Query: 446 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITG----IEEICIGSTICDPSKPN 501
+ + Q D++ +GD+ I + +I IG TI P
Sbjct: 229 STGKEYEVTEVGAQTPKXTKFDKL-----SAGDVGYIAASIKDVRDIRIGDTITHAKNPT 283
Query: 502 GLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDS 561
P+ + + + + T ++++ L+ N+ + V + + +
Sbjct: 284 KEPVPGFQPAKPXVYAGIYPA-------EDTTYEELRDALEKYAINDAAI-VYEPESSPA 335
Query: 562 I---YEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFKTL------------------ 599
+ + V G LH I+ E + RE G ++ + P VI++
Sbjct: 336 LGXGFRVGFLGLLHXEIVQERLEREYGVKIITTAPNVIYRVKKKFTDEVIEVRNPXDFPD 395
Query: 600 NGELYEPYENLFVDIEEINQ----GIIMQKLNYRGGDLKNIEINEKERVRLEYRIP-SRG 654
N L E E FV + I G I+Q + G KN + V LEY P S
Sbjct: 396 NAGLIEYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNXTYLDPNTVYLEYEXPLSEI 455
Query: 655 LIGFQNEFITLTRGTGLISHVFEEYAP 681
++ F ++ +++RG + F Y P
Sbjct: 456 IVDFHDKIKSISRGFASYDYEFIGYRP 482
>pdb|1ZE1|A Chain A, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE1|B Chain B, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE1|C Chain C, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE1|D Chain D, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
Length = 309
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 107/205 (52%), Gaps = 1/205 (0%)
Query: 12 VIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEAD 71
++ YKP G +S++ + +++ L +KVG+ GTLDPFA G+L + + T+ + +
Sbjct: 5 ILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLK 64
Query: 72 KYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYK 131
K Y + LG+ TET DI G++++ + EI E I +F G+ Q+PP YSA KYK
Sbjct: 65 KVYWVKMRLGLITETFDITGEVVEERECNVTEEEIREAIF-SFVGEYDQVPPAYSAKKYK 123
Query: 132 GIPLYKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDIGKMLG 191
G LYK AR G ++ R+ S GTYIR L DIG LG
Sbjct: 124 GERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGTYIRSLCMDIGYKLG 183
Query: 192 CGAHLKYLRRIGIDKLTLDKNIAII 216
CGA L R + T+++++ +
Sbjct: 184 CGATAVELVRESVGPHTIEESLNVF 208
>pdb|1ZE2|A Chain A, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE2|B Chain B, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
Length = 309
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 107/205 (52%), Gaps = 1/205 (0%)
Query: 12 VIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEAD 71
++ YKP G +S++ + +++ L +KVG+ GTLDPFA G+L + + T+ + +
Sbjct: 5 ILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLK 64
Query: 72 KYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYK 131
K Y + LG+ TET DI G++++ + EI E I +F G+ Q+PP YSA KYK
Sbjct: 65 KVYWVKMRLGLITETFDITGEVVEERECNVTEEEIREAIF-SFVGEYDQVPPAYSAKKYK 123
Query: 132 GIPLYKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDIGKMLG 191
G LYK AR G ++ R+ S GTYIR L DIG LG
Sbjct: 124 GERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGTYIRSLCMDIGYKLG 183
Query: 192 CGAHLKYLRRIGIDKLTLDKNIAII 216
CGA L R + T+++++ +
Sbjct: 184 CGATAVELVRESVGPHTIEESLNVF 208
>pdb|1R3E|A Chain A, Crystal Structure Of Trna Pseudouridine Synthase Trub And
Its Rna Complex: Rna-Protein Recognition Through A
Combination Of Rigid Docking And Induced Fit
Length = 309
Score = 119 bits (297), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 107/205 (52%), Gaps = 1/205 (0%)
Query: 12 VIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEAD 71
++ YKP G +S++ + +++ L +KVG+ GTLDPFA G+L + + T+ + +
Sbjct: 5 ILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLK 64
Query: 72 KYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYK 131
K Y + LG+ TET DI G++++ + EI E I +F G+ Q+PP YSA KYK
Sbjct: 65 KVYWVKMRLGLITETFDITGEVVEERECNVTEEEIREAIF-SFVGEYDQVPPAYSAKKYK 123
Query: 132 GIPLYKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDIGKMLG 191
G LYK AR G ++ R+ S GTYIR L DIG LG
Sbjct: 124 GERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGTYIRSLCMDIGYKLG 183
Query: 192 CGAHLKYLRRIGIDKLTLDKNIAII 216
CGA L R + T+++++ +
Sbjct: 184 CGATAVELVRESVGPHTIEESLNVF 208
>pdb|2AB4|A Chain A, Dissecting The Roles Of A Strictly Conserved Tyrosine In
Substrate Recognition And Catalysis By Pseudouridine 55
Synthase
Length = 309
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 107/205 (52%), Gaps = 1/205 (0%)
Query: 12 VIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEAD 71
++ YKP G +S++ + +++ L +KVG+ GTLDPFA G+L + + T+ + +
Sbjct: 5 ILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLK 64
Query: 72 KYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYK 131
K + + LG+ TET DI G++++ + EI E I +F G+ Q+PP YSA KYK
Sbjct: 65 KVFWVKMRLGLITETFDITGEVVEERECNVTEEEIREAIF-SFVGEYDQVPPAYSAKKYK 123
Query: 132 GIPLYKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDIGKMLG 191
G LYK AR G ++ R+ S GTYIR L DIG LG
Sbjct: 124 GERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGTYIRSLCMDIGYKLG 183
Query: 192 CGAHLKYLRRIGIDKLTLDKNIAII 216
CGA L R + T+++++ +
Sbjct: 184 CGATAVELVRESVGPHTIEESLNVF 208
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Query: 204 IDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFS 263
+DK+T +N+++IAHVDHGK+TL D L++++G + AR D+ + E+ERGITI S
Sbjct: 13 MDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKS 72
Query: 264 KNCSI----------------EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAV 307
S+ + N IN+ID+PGH DF EV L + D L+++D +
Sbjct: 73 TAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTI 132
Query: 308 EGPMPQTRFVTRKALKLGFKPIVVVNKIDRS 338
EG QT V R+AL KP+VV+NK+DR+
Sbjct: 133 EGVCVQTETVLRQALGERIKPVVVINKVDRA 163
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Query: 204 IDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFS 263
+DK+T +N+++IAHVDHGK+TL D L++++G + AR D+ + E+ERGITI S
Sbjct: 13 MDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKS 72
Query: 264 KNCSI----------------EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAV 307
S+ + N IN+ID+PGH DF EV L + D L+++D +
Sbjct: 73 TAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTI 132
Query: 308 EGPMPQTRFVTRKALKLGFKPIVVVNKIDRS 338
EG QT V R+AL KP+VV+NK+DR+
Sbjct: 133 EGVCVQTETVLRQALGERIKPVVVINKVDRA 163
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 134/241 (55%), Gaps = 23/241 (9%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
+N +IIAH+DHGK+TL D +++ G ++ + A+++DS ++E+ERGITI +++ +++Y
Sbjct: 5 RNFSIIAHIDHGKSTLSDRIIQICGGL-SDREMEAQVLDSMDLERERGITIKAQSVTLDY 63
Query: 271 NGT-----RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 325
+ ++N IDTPGH DF EV R L+ + LL++DA +G QT A+++
Sbjct: 64 KASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMD 123
Query: 326 FKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQ 385
+ + V+NKID A PE V + D+ + AT+ + SA G ++
Sbjct: 124 LEVVPVLNKIDLPAADPERVAEEIEDIV-GIDATD------AVRCSAKTGVGVQD----- 171
Query: 386 GNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 445
+ E +++ +P + + PLQ II + +YLG + + RI +G ++ V +M
Sbjct: 172 -----VLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVM 226
Query: 446 N 446
+
Sbjct: 227 S 227
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 134/241 (55%), Gaps = 23/241 (9%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
+N +IIAH+DHGK+TL D +++ G ++ + A+++DS ++E+ERGITI +++ +++Y
Sbjct: 5 RNFSIIAHIDHGKSTLSDRIIQICGGL-SDREMEAQVLDSMDLERERGITIKAQSVTLDY 63
Query: 271 NGT-----RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 325
+ ++N IDTPGH DF EV R L+ + LL++DA +G QT A+++
Sbjct: 64 KASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMD 123
Query: 326 FKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQ 385
+ + V+NKID A PE V + D+ + AT+ + SA G ++
Sbjct: 124 LEVVPVLNKIDLPAADPERVAEEIEDIV-GIDATD------AVRCSAKTGVGVQD----- 171
Query: 386 GNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 445
+ E +++ +P + + PLQ II + +YLG + + RI +G ++ V +M
Sbjct: 172 -----VLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVM 226
Query: 446 N 446
+
Sbjct: 227 S 227
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 90/159 (56%), Gaps = 5/159 (3%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRK--NQNINARIMDSNEIEKERGITIFSKNCSI 268
+NI IIAH+D GKTT + +L +G K + A MD E E++RGITI S +
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ G R+NIIDTPGH DF EVER L ++D + ++DA G PQT V R+A G
Sbjct: 71 AWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR 130
Query: 329 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367
IV VNK+D+ A E+ V L D+L A + P+
Sbjct: 131 IVFVNKMDKLGANFEYSVST---LHDRLQANAAPIQLPI 166
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 35/228 (15%)
Query: 391 LFEAILKYVPVHKD-------NSNNPLQLQII----SLEYSS---------YLGKIGIGR 430
+ +A++ Y+P D ++NP + I S E+++ Y+GK+ R
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFR 329
Query: 431 ILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICI 490
+ SG + S + N K + ++ ++ R ++ SGDI G+++
Sbjct: 330 VYSGTMTS--GSYVKNST--KGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGT 385
Query: 491 GSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIG 550
G T+C L + EP + ++ + + + + Q ++ H +
Sbjct: 386 GDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEET 445
Query: 551 LRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFK 597
+V + G GELHL IL++ M++E E +V P V ++
Sbjct: 446 GQVI----------IGGMGELHLDILVDRMKKEFNVECNVGAPMVSYR 483
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 603 LYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEF 662
+ EP + +++ E G IM + R G + +E +V Y +P + G+
Sbjct: 600 ILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAY-VPLSEMFGYATSL 658
Query: 663 ITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNG 696
+ T+G G + F+ YA D+ K+ G
Sbjct: 659 RSNTQGRGTYTMYFDHYAEVPKSIAEDIIKKNKG 692
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 90/159 (56%), Gaps = 5/159 (3%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRK--NQNINARIMDSNEIEKERGITIFSKNCSI 268
+NI I+AH+D GKTT + +L +G K + A MD E E++RGITI S +
Sbjct: 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ G R+NIIDTPGH DF EVER L ++D + ++DA G PQT V R+A G
Sbjct: 71 AWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR 130
Query: 329 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367
IV VNK+D+ A E+ V L D+L A + P+
Sbjct: 131 IVFVNKMDKLGANFEYSVST---LHDRLQANAAPIQLPI 166
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 35/228 (15%)
Query: 391 LFEAILKYVPVHKD-------NSNNPLQLQII----SLEYSS---------YLGKIGIGR 430
+ +A++ Y+P D ++NP + I S E+++ Y+GK+ R
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFR 329
Query: 431 ILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICI 490
+ SG + S + N K + ++ ++ R ++ SGDI G+++
Sbjct: 330 VYSGTMTS--GSYVKNST--KGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGT 385
Query: 491 GSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIG 550
G T+C L + EP + ++ + + + + Q ++ H +
Sbjct: 386 GDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEET 445
Query: 551 LRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFK 597
+V + G GELHL IL++ M++E E +V P V ++
Sbjct: 446 GQVI----------IGGMGELHLDILVDRMKKEFNVECNVGAPMVSYR 483
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 603 LYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEF 662
+ EP + +++ E G IM + R G + +E +V Y +P + G+
Sbjct: 600 ILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAY-VPLSEMFGYATSL 658
Query: 663 ITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNG 696
+ T+G G + F+ YA D+ K+ G
Sbjct: 659 RSNTQGRGTYTMYFDHYAEVPKSIAEDIIKKNKG 692
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 91/172 (52%), Gaps = 19/172 (11%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIM--DSNEIEKERGITIFSKNCSIE 269
NI ++AHVD GKTTL + LL SG + +++ D+ +E++RGITI + S +
Sbjct: 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQ 63
Query: 270 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 329
+ T++NIIDTPGH DF EV R LS++D +LLI A +G QTR + K+G I
Sbjct: 64 WENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTI 123
Query: 330 VVVNKID-------------RSNARPEWVVDATFDLFDKLCAT----EEQLD 364
+NKID + E V+ +L+ +C T EQ D
Sbjct: 124 FFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWD 175
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 89/159 (55%), Gaps = 5/159 (3%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRK--NQNINARIMDSNEIEKERGITIFSKNCSI 268
+NI IIAH+D GKTT + +L +G K + A MD E E++RGITI S +
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ G R+NIIDTPGH D EVER L ++D + ++DA G PQT V R+A G
Sbjct: 71 AWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR 130
Query: 329 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367
IV VNK+D+ A E+ V L D+L A + P+
Sbjct: 131 IVFVNKMDKLGANFEYSVST---LHDRLQANAAPIQLPI 166
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 35/228 (15%)
Query: 391 LFEAILKYVPVHKD-------NSNNPLQLQII----SLEYSS---------YLGKIGIGR 430
+ +A++ Y+P D ++NP + I S E+++ Y+GK+ R
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFR 329
Query: 431 ILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICI 490
+ SG + S + N K + ++ ++ R ++ SGDI G+++
Sbjct: 330 VYSGTMTS--GSYVKNST--KGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGT 385
Query: 491 GSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIG 550
G T+C L + EP + ++ + + + + Q ++ H +
Sbjct: 386 GDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEET 445
Query: 551 LRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFK 597
+V + G GELHL IL++ M++E E +V P V ++
Sbjct: 446 GQVI----------IGGMGELHLDILVDRMKKEFNVECNVGAPMVSYR 483
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 603 LYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEF 662
+ EP + +++ E G IM + R G + +E +V Y +P + G+
Sbjct: 600 ILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAY-VPLSEMFGYATSL 658
Query: 663 ITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNG 696
+ T+G G + F+ YA D+ K+ G
Sbjct: 659 RSNTQGRGTYTMYFDHYAEVPKSIAEDIIKKNKG 692
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 89/159 (55%), Gaps = 5/159 (3%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRK--NQNINARIMDSNEIEKERGITIFSKNCSI 268
+NI I+AH+D GKTT + +L +G K + A MD E E++RGITI S +
Sbjct: 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ G R+NIIDTPGH D EVER L ++D + ++DA G PQT V R+A G
Sbjct: 71 AWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR 130
Query: 329 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367
IV VNK+D+ A E+ V L D+L A + P+
Sbjct: 131 IVFVNKMDKLGANFEYSVST---LHDRLQANAAPIQLPI 166
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 35/228 (15%)
Query: 391 LFEAILKYVPVHKD-------NSNNPLQLQII----SLEYSS---------YLGKIGIGR 430
+ +A++ Y+P D ++NP + I S E+++ Y+GK+ R
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFR 329
Query: 431 ILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICI 490
+ SG + S + N K + ++ ++ R ++ SGDI G+++
Sbjct: 330 VYSGTMTS--GSYVKNST--KGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGT 385
Query: 491 GSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIG 550
G T+C L + EP + ++ + + + + Q ++ H +
Sbjct: 386 GDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEET 445
Query: 551 LRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFK 597
+V + G GELHL IL++ M++E E +V P V ++
Sbjct: 446 GQVI----------IGGMGELHLDILVDRMKKEFNVECNVGAPMVSYR 483
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 603 LYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEF 662
+ EP + +++ E G IM + R G + +E +V Y +P + G+
Sbjct: 600 ILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAY-VPLSEMFGYATSL 658
Query: 663 ITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNG 696
+ T+G G + F+ YA D+ K+ G
Sbjct: 659 RSNTQGRGTYTMYFDHYAEVPKSIAEDIIKKNKG 692
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 5/159 (3%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSI 268
+NI I AH+D GKTT + +L +G K ++ A MD E E+ERGITI + +
Sbjct: 13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC 72
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ RINIIDTPGH DF EVER + ++D +++ D+ +G PQ+ V R+A K
Sbjct: 73 FWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR 132
Query: 329 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367
I NK+D++ A W+V T ++L A + P+
Sbjct: 133 IAFANKMDKTGAD-LWLVIRTMQ--ERLGARPVVMQLPI 168
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 15/200 (7%)
Query: 399 VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKIN 458
V +H D N PL + Y+G++ R+ SG + S V K K ++
Sbjct: 299 VEIHPD-PNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT----KGRKERVA 353
Query: 459 QIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFM 518
++ R V E +GD+ + G++E G T+ P + + +I+ P I+
Sbjct: 354 RLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVI-LESIEVPEPVIDVA 412
Query: 519 VNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIE 578
+ A +E ++ L + + RV+ + +SG GELHL I+++
Sbjct: 413 IEPKTKADQE-------KLSQALARLAEEDPTFRVSTHPETGQTI-ISGMGELHLEIIVD 464
Query: 579 NMRRE-GYELSVSRPRVIFK 597
++RE + +V +P+V ++
Sbjct: 465 RLKREFKVDANVGKPQVAYR 484
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 5/159 (3%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSI 268
+NI I AH+D GKTT + +L +G K ++ A MD E E+ERGITI + +
Sbjct: 13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC 72
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ RINIIDTPGH DF EVER + ++D +++ D+ +G PQ+ V R+A K
Sbjct: 73 FWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR 132
Query: 329 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367
I NK+D++ A W+V T ++L A + P+
Sbjct: 133 IAFANKMDKTGAD-LWLVIRTMQ--ERLGARPVVMQLPI 168
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 15/200 (7%)
Query: 399 VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKIN 458
V +H D N PL + Y+G++ R+ SG + S V K K ++
Sbjct: 299 VEIHPD-PNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT----KGRKERVA 353
Query: 459 QIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFM 518
++ R V E +GD+ + G++E G T+ P + + +I+ P I+
Sbjct: 354 RLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVI-LESIEVPEPVIDVA 412
Query: 519 VNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIE 578
+ A +E ++ L + + RV+ + +SG GELHL I+++
Sbjct: 413 IEPKTKADQE-------KLSQALARLAEEDPTFRVSTHPETGQTI-ISGMGELHLEIIVD 464
Query: 579 NMRRE-GYELSVSRPRVIFK 597
++RE + +V +P+V ++
Sbjct: 465 RLKREFKVDANVGKPQVAYR 484
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 5/159 (3%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSI 268
+NI I AH+D GKTT + +L +G K ++ A MD E E+ERGITI + +
Sbjct: 13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC 72
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ RINIIDTPGH DF EVER + ++D +++ D+ +G PQ+ V R+A K
Sbjct: 73 FWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR 132
Query: 329 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367
I NK+D++ A W+V T ++L A + P+
Sbjct: 133 IAFANKMDKTGAD-LWLVIRTMQ--ERLGARPVVMQLPI 168
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 15/200 (7%)
Query: 399 VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKIN 458
V +H D N PL + Y+G++ R+ SG + S V K K ++
Sbjct: 299 VEIHPD-PNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT----KGRKERVA 353
Query: 459 QIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFM 518
++ R V E +GD+ + G++E G T+ P + + +I+ P I+
Sbjct: 354 RLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVI-LESIEVPEPVIDVA 412
Query: 519 VNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIE 578
+ A +E ++ L + + RV+ + +SG GELHL I+++
Sbjct: 413 IEPKTKADQE-------KLSQALARLAEEDPTFRVSTHPETGQTI-ISGMGELHLEIIVD 464
Query: 579 NMRRE-GYELSVSRPRVIFK 597
++RE + +V +P+V ++
Sbjct: 465 RLKREFKVDANVGKPQVAYR 484
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 5/159 (3%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSI 268
+NI I AH+D GKTT + +L +G K ++ A MD E E+ERGITI + +
Sbjct: 13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC 72
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ RINIIDTPGH DF EVER + ++D +++ D+ +G PQ+ V R+A K
Sbjct: 73 FWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR 132
Query: 329 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367
I NK+D++ A W+V T ++L A + P+
Sbjct: 133 IAFANKMDKTGAD-LWLVIRTMQ--ERLGARPVVMQLPI 168
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 15/200 (7%)
Query: 399 VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKIN 458
V +H D N PL + Y+G++ R+ SG + S V K K ++
Sbjct: 299 VEIHPD-PNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT----KGRKERVA 353
Query: 459 QIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFM 518
++ R V E +GD+ + G++E G T+ P + + +I+ P I+
Sbjct: 354 RLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVI-LESIEVPEPVIDVA 412
Query: 519 VNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIE 578
+ A +E ++ L + + RV+ + +SG GELHL I+++
Sbjct: 413 IEPKTKADQE-------KLSQALARLAEEDPTFRVSTHPETGQTI-ISGMGELHLEIIVD 464
Query: 579 NMRRE-GYELSVSRPRVIFK 597
++RE + +V +P+V ++
Sbjct: 465 RLKREFKVDANVGKPQVAYR 484
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 5/159 (3%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSI 268
+NI I AH+D GKTT + +L +G K ++ A MD E E+ERGITI + +
Sbjct: 13 RNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC 72
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ RINIIDTPGH DF EVER + ++D +++ D+ +G PQ+ V R+A K
Sbjct: 73 FWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR 132
Query: 329 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367
I NK+D++ A W+V T ++L A + P+
Sbjct: 133 IAFANKMDKTGAD-LWLVIRTMQ--ERLGARPVVMQLPI 168
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 15/200 (7%)
Query: 399 VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKIN 458
V +H D N PL + Y+G++ R+ SG + S V K K ++
Sbjct: 299 VEIHPD-PNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT----KGRKERVA 353
Query: 459 QIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFM 518
++ R V E +GD+ + G++E G T+ P + + +I+ P I+
Sbjct: 354 RLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVI-LESIEVPEPVIDVA 412
Query: 519 VNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIE 578
+ A +E ++ L + + RV+ + +SG GELHL I+++
Sbjct: 413 IEPKTKADQE-------KLSQALARLAEEDPTFRVSTHPETGQTI-ISGMGELHLEIIVD 464
Query: 579 NMRRE-GYELSVSRPRVIFK 597
++RE + +V +P+V ++
Sbjct: 465 RLKREFKVDANVGKPQVAYR 484
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 88/159 (55%), Gaps = 5/159 (3%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSI 268
+NI I AH+D GKTT + +L +G K ++ A MD E E+ERGITI + +
Sbjct: 13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAATMDFMEQERERGITITAAVTTC 72
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ RINIID PGH DF EVER + ++D +++ D+ +G PQ+ V R+A K
Sbjct: 73 FWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR 132
Query: 329 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367
I NK+D++ A W+V T ++L A + P+
Sbjct: 133 IAFANKMDKTGAD-LWLVIRTMQ--ERLGARPVVMQLPI 168
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 15/200 (7%)
Query: 399 VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKIN 458
V +H D N PL + Y+G++ R+ SG + S V K K ++
Sbjct: 299 VEIHPD-PNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT----KGRKERVA 353
Query: 459 QIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFM 518
++ R V E +GD+ + G++E G T+ P + + +I+ P I+
Sbjct: 354 RLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVI-LESIEVPEPVIDVA 412
Query: 519 VNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIE 578
+ A +E ++ L + + RV+ + +SG GELHL I+++
Sbjct: 413 IEPKTKADQE-------KLSQALARLAEEDPTFRVSTHPETGQTI-ISGMGELHLEIIVD 464
Query: 579 NMRRE-GYELSVSRPRVIFK 597
++RE + +V +P+V ++
Sbjct: 465 RLKREFKVDANVGKPQVAYR 484
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 88/159 (55%), Gaps = 5/159 (3%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSI 268
+NI I AH+D GKTT + +L +G K ++ A MD E E+ERGITI + +
Sbjct: 13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC 72
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ RINIID PGH DF EVER + ++D +++ D+ +G PQ+ V R+A K
Sbjct: 73 FWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR 132
Query: 329 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367
I NK+D++ A W+V T ++L A + P+
Sbjct: 133 IAFANKMDKTGAD-LWLVIRTMQ--ERLGARPVVMQLPI 168
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 87/200 (43%), Gaps = 15/200 (7%)
Query: 399 VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKIN 458
V +H D N PL + Y+G++ R+ SG + S V K K ++
Sbjct: 299 VEIHPD-PNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT----KGRKERVA 353
Query: 459 QIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFM 518
++ R V E +GD+ + G++E G T+ P + + +I+ P I+
Sbjct: 354 RLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVI-LESIEVPEPVIDVA 412
Query: 519 VNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIE 578
+ A +E ++ L + + V+ + S +SG GEL L I+++
Sbjct: 413 IEPKTKADQE-------KLSQALARLAEESPTFSVSTHPETGSTI-ISGMGELSLEIIVD 464
Query: 579 NMRRE-GYELSVSRPRVIFK 597
++RE + +V +P+V ++
Sbjct: 465 RLKREFKVDANVGKPQVAYR 484
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 88/159 (55%), Gaps = 5/159 (3%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSI 268
+NI I AH+D GKTT + +L +G K ++ A MD E E+ERGITI + +
Sbjct: 13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC 72
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ RINIID PGH DF EVER + ++D +++ D+ +G PQ+ V R+A K
Sbjct: 73 FWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR 132
Query: 329 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367
I NK+D++ A W+V T ++L A + P+
Sbjct: 133 IAFANKMDKTGAD-LWLVIRTMQ--ERLGARPVVMQLPI 168
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 15/200 (7%)
Query: 399 VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKIN 458
V +H D N PL + Y+G++ R+ SG + S V K K ++
Sbjct: 299 VEIHPD-PNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT----KGRKERVA 353
Query: 459 QIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFM 518
++ R V E +GD+ + G++E G T+ P + + +I+ P I+
Sbjct: 354 RLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVI-LESIEVPEPVIDVA 412
Query: 519 VNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIE 578
+ A +E ++ L + + RV+ + +SG GELHL I+++
Sbjct: 413 IEPKTKADQE-------KLSQALARLAEEDPTFRVSTHPETGQTI-ISGMGELHLEIIVD 464
Query: 579 NMRRE-GYELSVSRPRVIFK 597
++RE + +V +P+V ++
Sbjct: 465 RLKREFKVDANVGKPQVAYR 484
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 79/139 (56%), Gaps = 9/139 (6%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSI 268
+NI I AH+D GKTT + +L +G K ++ A MD E E+ERGITI S +
Sbjct: 10 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTA 69
Query: 269 EYNGT-------RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKA 321
++G RINIIDTPGH DF EVER + ++D +++ AV G PQ+ V R+A
Sbjct: 70 FWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA 129
Query: 322 LKLGFKPIVVVNKIDRSNA 340
K I VNK+DR A
Sbjct: 130 NKYKVPRIAFVNKMDRMGA 148
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 19/214 (8%)
Query: 389 IPLFEAIL---KYVPVHKDNSNN-PLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVI 444
+P IL K P + S++ P + ++G + R+ SG + S D V+
Sbjct: 291 VPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNS-GDTVL 349
Query: 445 MNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLP 504
+ + +I Q+ K R + E +GDI G++++ G T+CDP P L
Sbjct: 350 NSVKAARERFGRIVQMHANK---REEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILE 406
Query: 505 MLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYE 564
+ EP ++I V A +E ++ L K + RV ++ +
Sbjct: 407 RMEFPEPVISI--AVEPKTKADQE-------KMGLALGRLAKEDPSFRVWTDEESNQTI- 456
Query: 565 VSGRGELHLTILIENMRRE-GYELSVSRPRVIFK 597
++G GELHL I+++ M+RE E +V +P+V ++
Sbjct: 457 IAGMGELHLDIIVDRMKREFNVEANVGKPQVAYR 490
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 596 FKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGL 655
FK L EP + V+ E N G ++ L+ R G LK E +E V++ +P +
Sbjct: 604 FKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQE-SEVTGVKIHAEVPLSEM 662
Query: 656 IGFQNEFITLTRGTGLISHVFEEY 679
G+ + +LT+G + F +Y
Sbjct: 663 FGYATQLRSLTKGRASYTMEFLKY 686
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 144/306 (47%), Gaps = 29/306 (9%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKNC 266
N+ I HVDHGKTTL L + +N N + D +I E+ RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAA----ENPNVEVKDYGDIDKAPEERARGITINTAHV 68
Query: 267 SIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF 326
E + +D PGHAD+ + + +D +L++ A +GPMPQTR A ++G
Sbjct: 69 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 327 KPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYA--NENSK 382
IVV +NK+D + PE + ++ D L E D PVI SAL + N K
Sbjct: 129 PYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPK 187
Query: 383 ARQGN------MIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRI 436
R+G + L +AI +Y+P + + P + + + + G + GRI G++
Sbjct: 188 TRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKV 247
Query: 437 KSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGD--IVLITGI--EEICIGS 492
K +V I+ G + K + + + R + E ++GD VL+ G+ EE+ G
Sbjct: 248 KVGDEVEIV-GLAPETRKTVVTGVE----MHRKTLQEGIAGDNVGVLLRGVSREEVERGQ 302
Query: 493 TICDPS 498
+ P
Sbjct: 303 VLAKPG 308
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 79/139 (56%), Gaps = 9/139 (6%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSI 268
+NI I AH+D GKTT + +L +G K ++ A MD E E+ERGITI S +
Sbjct: 11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTA 70
Query: 269 EYNGT-------RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKA 321
++G RINIIDTPGH DF EVER + ++D +++ AV G PQ+ V R+A
Sbjct: 71 FWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA 130
Query: 322 LKLGFKPIVVVNKIDRSNA 340
K I VNK+DR A
Sbjct: 131 NKYKVPRIAFVNKMDRMGA 149
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 19/214 (8%)
Query: 389 IPLFEAIL---KYVPVHKDNSNN-PLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVI 444
+P IL K P + S++ P + ++G + R+ SG + S D V+
Sbjct: 292 VPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNS-GDTVL 350
Query: 445 MNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLP 504
+ + +I Q+ K R + E +GDI G++++ G T+CDP P L
Sbjct: 351 NSVKAARERFGRIVQMHANK---REEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILE 407
Query: 505 MLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYE 564
+ EP ++I V A +E ++ L K + RV ++ +
Sbjct: 408 RMEFPEPVISI--AVEPKTKADQE-------KMGLALGRLAKEDPSFRVWTDEESNQTI- 457
Query: 565 VSGRGELHLTILIENMRRE-GYELSVSRPRVIFK 597
++G GELHL I+++ M+RE E +V +P+V ++
Sbjct: 458 IAGMGELHLDIIVDRMKREFNVEANVGKPQVAYR 491
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 596 FKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGL 655
FK L EP + V+ E N G ++ L+ R G LK E +E V++ +P +
Sbjct: 605 FKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQE-SEVTGVKIHAEVPLSEM 663
Query: 656 IGFQNEFITLTRGTGLISHVFEEY 679
G+ + +LT+G + F +Y
Sbjct: 664 FGYATQLRSLTKGRASYTMEFLKY 687
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 144/306 (47%), Gaps = 29/306 (9%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKNC 266
N+ I HVDHGKTTL L + +N N + D +I E+ RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAA----ENPNVEVKDYGDIDKAPEERARGITINTAHV 68
Query: 267 SIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF 326
E + +D PGHAD+ + + +D +L++ A +GPMPQTR A ++G
Sbjct: 69 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 327 KPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYA--NENSK 382
IVV +NK+D + PE + ++ D L E D PVI SAL + N K
Sbjct: 129 PYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPK 187
Query: 383 ARQGN------MIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRI 436
R+G + L +AI +Y+P + + P + + + + G + GRI G++
Sbjct: 188 TRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKV 247
Query: 437 KSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGD--IVLITGI--EEICIGS 492
K +V I+ G + K + + + R + E ++GD VL+ G+ EE+ G
Sbjct: 248 KVGDEVEIV-GLAPETRKTVVTGVE----MHRKTLQEGIAGDNVGVLLRGVSREEVERGQ 302
Query: 493 TICDPS 498
+ P
Sbjct: 303 VLAKPG 308
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 144/306 (47%), Gaps = 29/306 (9%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKNC 266
N+ I HVDHGKTTL L + +N N + D +I E+ RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAA----ENPNVEVKDYGDIDKAPEERARGITINTAHV 68
Query: 267 SIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF 326
E + +D PGHAD+ + + +D +L++ A +GPMPQTR A ++G
Sbjct: 69 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 327 KPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYA--NENSK 382
IVV +NK+D + PE + ++ D L E D PVI SAL + N K
Sbjct: 129 PYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPK 187
Query: 383 ARQGN------MIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRI 436
R+G + L +AI +Y+P + + P + + + + G + GRI G++
Sbjct: 188 TRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKV 247
Query: 437 KSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGD--IVLITGI--EEICIGS 492
K +V I+ G + K + + + R + E ++GD VL+ G+ EE+ G
Sbjct: 248 KVGDEVEIV-GLAPETRKTVVTGVE----MHRKTLQEGIAGDNVGVLLRGVSREEVERGQ 302
Query: 493 TICDPS 498
+ P
Sbjct: 303 VLAKPG 308
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 145/307 (47%), Gaps = 31/307 (10%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTF-RKNQNINARIMDSNEI-----EKERGITIFSKN 265
N+ I HVDHGKTTL L TF +N N + D +I E+ RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAAL-----TFVTAAENPNVEVKDYGDIDKAPEERARGITINTAH 67
Query: 266 CSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 325
E + +D PGHAD+ + + +D +L++ A +GPMPQTR A ++G
Sbjct: 68 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 326 FKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYA--NENS 381
IVV +NK+D + PE + ++ D L E D PVI SAL + N
Sbjct: 128 VPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNP 186
Query: 382 KARQGN------MIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGR 435
K R+G + L +AI +Y+P + + P + + + + G + GRI G+
Sbjct: 187 KTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGK 246
Query: 436 IKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGD--IVLITGI--EEICIG 491
+K +V I+ G + K + + + R + E ++GD VL+ G+ EE+ G
Sbjct: 247 VKVGDEVEIV-GLAPETRKTVVTGVE----MHRKTLQEGIAGDNVGVLLRGVSREEVERG 301
Query: 492 STICDPS 498
+ P
Sbjct: 302 QVLAKPG 308
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 77/139 (55%), Gaps = 9/139 (6%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITI------- 261
+NI I AHVD GKTT + +L +G K ++ A D E+ERGITI
Sbjct: 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTT 73
Query: 262 FSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKA 321
F K +Y+ R+N+IDTPGH DF EVER L ++D +++ G PQ+ V R+A
Sbjct: 74 FWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQA 133
Query: 322 LKLGFKPIVVVNKIDRSNA 340
K G IV VNK+DR A
Sbjct: 134 NKYGVPRIVYVNKMDRQGA 152
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 90/197 (45%), Gaps = 16/197 (8%)
Query: 402 HKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIR 461
H D+ N P + ++G + R+ SG + S V+ K K ++ ++
Sbjct: 313 HADD-NEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVL----NSVKGKKERVGRMV 367
Query: 462 VFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNN 521
R + E +GDI + G++++ G T+C KP L ++ EP +++ V
Sbjct: 368 QMHANQREEIKEVRAGDIAALIGMKDVTTGDTLCSIEKPIILERMDFPEPVISV--AVEP 425
Query: 522 SPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMR 581
A +E I ++ + + RV ++ +SG GELHL I+++ M+
Sbjct: 426 KTKADQEKMGIALGKLA-------QEDPSFRVKTDEESGQTI-ISGMGELHLDIIVDRMK 477
Query: 582 RE-GYELSVSRPRVIFK 597
RE G E ++ +P+V ++
Sbjct: 478 REFGVEANIGKPQVAYR 494
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 144/306 (47%), Gaps = 29/306 (9%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKNC 266
N+ I HVDHGKTTL L + +N N + D +I E+ RGITI + +
Sbjct: 14 NVGTIGHVDHGKTTLTAALTYVAAA----ENPNVEVKDYGDIDKAPEERARGITINTAHV 69
Query: 267 SIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF 326
E + +D PGHAD+ + + +D +L++ A +GPMPQTR A ++G
Sbjct: 70 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 129
Query: 327 KPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYA--NENSK 382
IVV +NK+D + PE + ++ D L E D PVI SAL + N K
Sbjct: 130 PYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPK 188
Query: 383 ARQGN------MIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRI 436
R+G + L +AI +Y+P + + P + + + + G + GRI G++
Sbjct: 189 TRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKV 248
Query: 437 KSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGD--IVLITGI--EEICIGS 492
K +V I+ G + + + + + R + E ++GD VL+ G+ EE+ G
Sbjct: 249 KVGDEVEIV-GLAPETRRTVVTGVE----MHRKTLQEGIAGDNVGVLLRGVSREEVERGQ 303
Query: 493 TICDPS 498
+ P
Sbjct: 304 VLAKPG 309
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 144/306 (47%), Gaps = 29/306 (9%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKNC 266
N+ I HVDHGKTTL L + +N N + D +I E+ RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAA----ENPNVEVKDYGDIDKAPEERARGITINTAHV 68
Query: 267 SIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF 326
E + +D PGHAD+ + + +D +L++ A +GPMPQTR A ++G
Sbjct: 69 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 327 KPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYA--NENSK 382
IVV +NK+D + PE + ++ D L E D PVI SAL + N K
Sbjct: 129 PYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPK 187
Query: 383 ARQGN------MIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRI 436
R+G + L +AI +Y+P + + P + + + + G + GRI G++
Sbjct: 188 TRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKV 247
Query: 437 KSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGD--IVLITGI--EEICIGS 492
K +V I+ G + + + + + R + E ++GD VL+ G+ EE+ G
Sbjct: 248 KVGDEVEIV-GLAPETRRTVVTGVE----MHRKTLQEGIAGDNVGVLLRGVSREEVERGQ 302
Query: 493 TICDPS 498
+ P
Sbjct: 303 VLAKPG 308
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 144/306 (47%), Gaps = 29/306 (9%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKNC 266
N+ I HVDHGKTTL L + +N N + D +I E+ RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAA----ENPNVEVKDYGDIDKAPEERARGITINTAHV 68
Query: 267 SIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF 326
E + +D PGHAD+ + + +D +L++ A +GPMPQTR A ++G
Sbjct: 69 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 327 KPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYA--NENSK 382
IVV +NK+D + PE + ++ D L E D PVI SAL + N K
Sbjct: 129 PYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPK 187
Query: 383 ARQGN------MIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRI 436
R+G + L +AI +Y+P + + P + + + + G + GRI G++
Sbjct: 188 TRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKV 247
Query: 437 KSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGD--IVLITGI--EEICIGS 492
K +V I+ G + + + + + R + E ++GD VL+ G+ EE+ G
Sbjct: 248 KVGDEVEIV-GLAPETRRTVVTGVE----MHRKTLQEGIAGDNVGVLLRGVSREEVERGQ 302
Query: 493 TICDPS 498
+ P
Sbjct: 303 VLAKPG 308
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 145/306 (47%), Gaps = 29/306 (9%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKNC 266
N+ I HVDHGKTTL L + +N N + D +I E+ RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAA----ENPNVEVKDYGDIDKAPEERARGITINTAHV 68
Query: 267 SIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF 326
E + +D PGHAD+ + + +D +L++ A +GPMPQTR A ++G
Sbjct: 69 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 327 KPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYA--NENSK 382
IVV +NK+D + PE + ++ D L E D PVI SAL ++N K
Sbjct: 129 PYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPK 187
Query: 383 ARQGN------MIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRI 436
++G + L +AI +Y+P + + P + + + + G + GRI G++
Sbjct: 188 TKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKV 247
Query: 437 KSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--LITGI--EEICIGS 492
K +V I+ G + K + + + R + E ++GD V L+ G+ EE+ G
Sbjct: 248 KVGDEVEIV-GLAPETRKTVVTGVE----MHRKTLQEGIAGDNVGLLLRGVSREEVERGQ 302
Query: 493 TICDPS 498
+ P
Sbjct: 303 VLAKPG 308
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 145/306 (47%), Gaps = 29/306 (9%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKNC 266
N+ I HVDHGKTTL L + +N N + D +I E+ RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAA----ENPNVEVKDYGDIDKAPEERARGITINTAHV 68
Query: 267 SIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF 326
E + +D PGHAD+ + + +D +L++ A +GPMPQTR A ++G
Sbjct: 69 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 327 KPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYA--NENSK 382
IVV +NK+D + PE + ++ D L E D PVI SAL ++N K
Sbjct: 129 PYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPK 187
Query: 383 ARQGN------MIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRI 436
++G + L +AI +Y+P + + P + + + + G + GRI G++
Sbjct: 188 TKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKV 247
Query: 437 KSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--LITGI--EEICIGS 492
K +V I+ G + K + + + R + E ++GD V L+ G+ EE+ G
Sbjct: 248 KVGDEVEIV-GLAPETRKTVVTGVE----MHRKTLQEGIAGDNVGLLLRGVSREEVERGQ 302
Query: 493 TICDPS 498
+ P
Sbjct: 303 VLAKPG 308
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 146/307 (47%), Gaps = 31/307 (10%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTF-RKNQNINARIMDSNEI-----EKERGITIFSKN 265
N+ I HVDHGKTTL L TF +N N + D +I E+ RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAAL-----TFVTAAENPNVEVKDYGDIDKAPEERARGITINTAH 67
Query: 266 CSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 325
E + +D PGHAD+ + + +D +L++ A +GPMPQTR A ++G
Sbjct: 68 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 326 FKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYA--NENS 381
IVV +NK+D + PE + ++ D L E D PVI SAL ++N
Sbjct: 128 VPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNP 186
Query: 382 KARQGN------MIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGR 435
K ++G + L +AI +Y+P + + P + + + + G + GRI G+
Sbjct: 187 KTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGK 246
Query: 436 IKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--LITGI--EEICIG 491
+K +V I+ G + K + + + R + E ++GD V L+ G+ EE+ G
Sbjct: 247 VKVGDEVEIV-GLAPETRKTVVTGVE----MHRKTLQEGIAGDNVGLLLRGVSREEVERG 301
Query: 492 STICDPS 498
+ P
Sbjct: 302 QVLAKPG 308
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 11/171 (6%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINAR------IMDSNEIEKERGITIFSKN 265
AII+H D GKTTL + LL G + ++ AR D +E+ERGI++ +
Sbjct: 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSV 92
Query: 266 CSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 325
Y +N++DTPGH DF + R+L+ VD+ L++IDA +G QTR + ++
Sbjct: 93 MQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR 151
Query: 326 FKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHG 375
P++ VNK+DR P +D D+ L + +P+ S+ G
Sbjct: 152 ATPVMTFVNKMDREALHP---LDVMADIEQHLQIECAPMTWPIGMGSSFKG 199
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 9/139 (6%)
Query: 211 KNIAIIAHVDHGKTTLIDHLL------RQSGTFRKNQNINARIMDSNEIEKERGITIFSK 264
+ AII+H D GKTTL + LL + +GT + + D E+EK+RGI++ +
Sbjct: 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWXELEKQRGISVTTS 73
Query: 265 NCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL 324
Y IN++DTPGHADF + R L+ VD+ L +IDA +G P+T + +L
Sbjct: 74 VXQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRT-IKLXEVCRL 132
Query: 325 GFKPI-VVVNKIDRSNARP 342
PI +NK DR + RP
Sbjct: 133 RHTPIXTFINKXDR-DTRP 150
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 17/182 (9%)
Query: 211 KNIAIIAHVDHGKTTLIDHLL------RQSGTFR-KNQNINARIMDSNEIEKERGITIFS 263
+ AII+H D GKTT+ + +L + +GT + + N +A+ D E+EK+RGI+I +
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAK-SDWMEMEKQRGISITT 72
Query: 264 KNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK 323
Y+ +N++DTPGH DF + R L+ VD L++IDA +G +TR + + +
Sbjct: 73 SVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLM-EVTR 131
Query: 324 LGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV----IYTSALHGYAN 378
L PI+ +NK+DR P ++D + CA + +P+ ++ H Y +
Sbjct: 132 LRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAP---ITWPIGCGKLFKGVYHLYKD 188
Query: 379 EN 380
E
Sbjct: 189 ET 190
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 17/182 (9%)
Query: 211 KNIAIIAHVDHGKTTLIDHLL------RQSGTFR-KNQNINARIMDSNEIEKERGITIFS 263
+ AII+H D GKTT+ + +L + +GT + + N +A+ D E+EK+RGI+I +
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAK-SDWMEMEKQRGISITT 72
Query: 264 KNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK 323
Y+ +N++DTPGH DF + R L+ VD L++IDA +G +TR + + +
Sbjct: 73 SVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLM-EVTR 131
Query: 324 LGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV----IYTSALHGYAN 378
L PI+ +NK+DR P ++D + CA + +P+ ++ H Y +
Sbjct: 132 LRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAP---ITWPIGCGKLFKGVYHLYKD 188
Query: 379 EN 380
E
Sbjct: 189 ET 190
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 123/275 (44%), Gaps = 18/275 (6%)
Query: 212 NIAIIAHVDHGKTTL---IDHLLRQSG--TFRKNQNINARIMDSNEIEKERGITIFSKNC 266
N+ I HVDHGKTTL I +L + G F+K + I D+ E+ RGITI + +
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEI-----DNAPEERARGITINAAHV 59
Query: 267 SIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF 326
D PGHAD+ + + +D +L++ A +GPMPQTR A ++G
Sbjct: 60 EYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGV 119
Query: 327 KPIVV-VNKID--RSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA 383
+ +VV VNK D + + E V +L + E+ P+I SAL + +
Sbjct: 120 EHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEET--PIIVGSALCALEQRDPEL 177
Query: 384 RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVV 443
++ L +A+ Y+PV + P L + S+ G + G + G +K +
Sbjct: 178 GLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECE 237
Query: 444 IMNGPDDKPNKAKINQIRVF-KGLDRVLVNEALSG 477
+ K + + I +F K LDR + L
Sbjct: 238 FLG--HSKNIRTVVTGIEMFHKSLDRAEAGDNLGA 270
>pdb|3LWO|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
5BRU
pdb|3LWP|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
5BRDU
pdb|3LWQ|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
3MU
pdb|3LWR|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
4SU
pdb|3LWV|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
2'- Deoxyuridine
Length = 340
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 83/186 (44%), Gaps = 37/186 (19%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP G +S+ + IK +LN +K G+ GTLDP +G+LP+ +AT+ L A K Y A
Sbjct: 53 KPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQALLPAGKEYVA 112
Query: 77 IIHLGITTETGDI-EGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPL 135
++HL GD+ E KII +++ F G+I Q PP+ SA+K +
Sbjct: 113 LMHL-----HGDVPEDKII--------------QVMKEFEGEIIQRPPLRSAVKRR---- 149
Query: 136 YKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAH 195
+ R+ GTYIR L IG LG GAH
Sbjct: 150 -------------LRTRKVYYIEVLEIEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAH 196
Query: 196 LKYLRR 201
+ LRR
Sbjct: 197 MSELRR 202
>pdb|2HVY|A Chain A, Crystal Structure Of An HACA BOX RNP FROM PYROCOCCUS
FURIOSUS
pdb|3HAX|A Chain A, Crystal Structure Of A Substrate-Bound Gar1-Minus HACA RNP
FROM Pyrococcus Furiosus
pdb|3HAY|A Chain A, Crystal Structure Of A Substrate-Bound Full HACA RNP FROM
Pyrococcus Furiosus
Length = 346
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 83/186 (44%), Gaps = 37/186 (19%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP G +S+ + IK +LN +K G+ GTLDP +G+LP+ +AT+ L A K Y A
Sbjct: 53 KPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQALLPAGKEYVA 112
Query: 77 IIHLGITTETGDI-EGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPL 135
++HL GD+ E KII +++ F G+I Q PP+ SA+K +
Sbjct: 113 LMHL-----HGDVPEDKII--------------QVMKEFEGEIIQRPPLRSAVKRR---- 149
Query: 136 YKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAH 195
+ R+ GTYIR L IG LG GAH
Sbjct: 150 -------------LRTRKVYYIEVLEIEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAH 196
Query: 196 LKYLRR 201
+ LRR
Sbjct: 197 MSELRR 202
>pdb|2EY4|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex
pdb|2EY4|B Chain B, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex
Length = 333
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 85/186 (45%), Gaps = 37/186 (19%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP G +S+ + IK +LN +K G+ GTLDP +G+LP+ +AT+ L A K Y A
Sbjct: 53 KPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQALLPAGKEYVA 112
Query: 77 IIHLGITTETGDI-EGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPL 135
++HL GD+ E KII +++ F G+I Q PP+ SA+K
Sbjct: 113 LMHL-----HGDVPEDKII--------------QVMKEFEGEIIQRPPLRSAVK------ 147
Query: 136 YKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAH 195
+ R+ + R+ GTYIR L IG LG GAH
Sbjct: 148 -RRLRTRKVYYIEVLEIEGRD----------VLFRVGVEAGTYIRSLIHHIGLALGVGAH 196
Query: 196 LKYLRR 201
+ LRR
Sbjct: 197 MSELRR 202
>pdb|3MQK|A Chain A, Cbf5-Nop10-Gar1 Complex Binding With 17mer Rna Containing
Aca Trinucleotide
Length = 328
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 85/186 (45%), Gaps = 37/186 (19%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP G +S+ + IK +LN +K G+ GTLDP +G+LP+ +AT+ L A K Y A
Sbjct: 46 KPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQALLPAGKEYVA 105
Query: 77 IIHLGITTETGDI-EGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPL 135
++HL GD+ E KII +++ F G+I Q PP+ SA+K
Sbjct: 106 LMHL-----HGDVPEDKII--------------QVMKEFEGEIIQRPPLRSAVK------ 140
Query: 136 YKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAH 195
+ R+ + R+ GTYIR L IG LG GAH
Sbjct: 141 -RRLRTRKVYYIEVLEIEGRD----------VLFRVGVEAGTYIRSLIHHIGLALGVGAH 189
Query: 196 LKYLRR 201
+ LRR
Sbjct: 190 MSELRR 195
>pdb|3HJW|A Chain A, Structure Of A Functional Ribonucleoprotein Pseudouridine
Synthase Bound To A Substrate Rna
pdb|3HJY|A Chain A, Structure Of A Functional Ribonucleoprotein Pseudouridine
Synthase Bound To A Substrate Rna
Length = 327
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 85/186 (45%), Gaps = 37/186 (19%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP G +S+ + IK +LN +K G+ GTLDP +G+LP+ +AT+ L A K Y A
Sbjct: 46 KPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQALLPAGKEYVA 105
Query: 77 IIHLGITTETGDI-EGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPL 135
++HL GD+ E KII +++ F G+I Q PP+ SA+K
Sbjct: 106 LMHL-----HGDVPEDKII--------------QVMKEFEGEIIQRPPLRSAVK------ 140
Query: 136 YKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAH 195
+ R+ + R+ GTYIR L IG LG GAH
Sbjct: 141 -RRLRTRKVYYIEVLEIEGRD----------VLFRVGVEAGTYIRSLIHHIGLALGVGAH 189
Query: 196 LKYLRR 201
+ LRR
Sbjct: 190 MSELRR 195
>pdb|2APO|A Chain A, Crystal Structure Of The Methanococcus Jannaschii Cbf5
Nop10 Complex
Length = 357
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 77/185 (41%), Gaps = 35/185 (18%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP G +S+ +K +LN K G+ GTLDP TG+LP+ ATK K Y
Sbjct: 73 KPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERATKTIPMWHIPPKEYVC 132
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
++HL + S E I ++ F G+I Q PP+ +A+K +
Sbjct: 133 LMHL------------------HRDASEEDILRVFKEFTGRIYQRPPLKAAVKRR----- 169
Query: 137 KYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
+ R+ C GTYIR L EDIG+ LG AH+
Sbjct: 170 ------------LRIRKIHELELLDKDGKDVLFRVKCQSGTYIRKLCEDIGEALGTSAHM 217
Query: 197 KYLRR 201
+ LRR
Sbjct: 218 QELRR 222
>pdb|2AUS|C Chain C, Crystal Structure Of The Archaeal Box HACA SRNP NOP10-Cbf5
Complex
pdb|2AUS|A Chain A, Crystal Structure Of The Archaeal Box HACA SRNP NOP10-Cbf5
Complex
Length = 334
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 80/185 (43%), Gaps = 35/185 (18%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP G +S+ + IK +LN +K G+ GTLDP +G+LP+ AT+ L A K Y A
Sbjct: 53 KPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLPVALERATRVVQALLPAGKEYVA 112
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
++HL + ++P + I ++ F G+I Q PP+ SA+K +
Sbjct: 113 LMHL----------------HGDVPE--DKIRAVMKEFEGEIIQRPPLRSAVKRR----- 149
Query: 137 KYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
+ R+ GTYIR L IG LG GAH+
Sbjct: 150 ------------LRTRKVYYIEILEIDGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHM 197
Query: 197 KYLRR 201
LRR
Sbjct: 198 AELRR 202
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 140/305 (45%), Gaps = 31/305 (10%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARI---MDSNEIEKERGITIFSKNCSI 268
N+ I HVDHGKTTL + + K AR +D+ EK RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 69
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ +D PGHAD+ + + +D +L++ A +GPMPQTR ++G
Sbjct: 70 DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPY 129
Query: 329 IVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-----PVIYTSALHGYANENSK 382
I+V +NK D + E +++ +L + Q DF P++ SAL A E
Sbjct: 130 IIVFLNKCDMVDD--EELLELVEMEVRELLS---QYDFPGDDTPIVRGSALK--ALEGDA 182
Query: 383 ARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDV 442
+ ++ L + Y+P + + P L I + S G + GR+ G IK ++V
Sbjct: 183 EWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEV 242
Query: 443 VIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGD--IVLITGI--EEICIGSTICDPS 498
I+ + K+ + +F R L++E +G+ VL+ GI EEI G + P
Sbjct: 243 EIVG--IKETQKSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 296
Query: 499 --KPN 501
KP+
Sbjct: 297 TIKPH 301
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 140/305 (45%), Gaps = 31/305 (10%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARI---MDSNEIEKERGITIFSKNCSI 268
N+ I HVDHGKTTL + + K AR +D+ EK RGITI + +
Sbjct: 14 NVGTIGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 70
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ +D PGHAD+ + + +D +L++ A +GPMPQTR ++G
Sbjct: 71 DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPY 130
Query: 329 IVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-----PVIYTSALHGYANENSK 382
I+V +NK D + E +++ +L + Q DF P++ SAL A E
Sbjct: 131 IIVFLNKCDMVDD--EELLELVEMEVRELLS---QYDFPGDDTPIVRGSALK--ALEGDA 183
Query: 383 ARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDV 442
+ ++ L + Y+P + + P L I + S G + GR+ G IK ++V
Sbjct: 184 EWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEV 243
Query: 443 VIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGD--IVLITGI--EEICIGSTICDPS 498
I+ + K+ + +F R L++E +G+ VL+ GI EEI G + P
Sbjct: 244 EIVG--IKETQKSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 297
Query: 499 --KPN 501
KP+
Sbjct: 298 TIKPH 302
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 140/305 (45%), Gaps = 31/305 (10%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARI---MDSNEIEKERGITIFSKNCSI 268
N+ I HVDHGKTTL + + K AR +D+ EK RGITI + +
Sbjct: 5 NVGTIGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 61
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ +D PGHAD+ + + +D +L++ A +GPMPQTR ++G
Sbjct: 62 DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPY 121
Query: 329 IVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-----PVIYTSALHGYANENSK 382
I+V +NK D + E +++ +L + Q DF P++ SAL A E
Sbjct: 122 IIVFLNKCDMVDD--EELLELVEMEVRELLS---QYDFPGDDTPIVRGSALK--ALEGDA 174
Query: 383 ARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDV 442
+ ++ L + Y+P + + P L I + S G + GR+ G IK ++V
Sbjct: 175 EWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEV 234
Query: 443 VIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGD--IVLITGI--EEICIGSTICDPS 498
I+ + K+ + +F R L++E +G+ VL+ GI EEI G + P
Sbjct: 235 EIVG--IKETQKSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 288
Query: 499 --KPN 501
KP+
Sbjct: 289 TIKPH 293
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 141/305 (46%), Gaps = 31/305 (10%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARI---MDSNEIEKERGITIFSKNCSI 268
N+ I HVDHGKTTL + + K AR +D+ EK RGITI + +
Sbjct: 14 NVGTIGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 70
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ +D PGHAD+ + + +D +L++ A +GPMPQTR ++G
Sbjct: 71 DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPY 130
Query: 329 IVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-----PVIYTSALHGYANENSK 382
I+V +NK D + E +++ +L + Q DF P++ SAL A E
Sbjct: 131 IIVFLNKCDMVDD--EELLELVEMEVRELLS---QYDFPGDDTPIVRGSALK--ALEGDA 183
Query: 383 ARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDV 442
+ ++ L + Y+P + + P L I + S G + GR+ G IK ++V
Sbjct: 184 EWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEV 243
Query: 443 VIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGD--IVLITGI--EEICIGSTICDPS 498
I+ + + K+ + +F R L++E +G+ VL+ GI EEI G + P
Sbjct: 244 EIVGIKETQ--KSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 297
Query: 499 --KPN 501
KP+
Sbjct: 298 TIKPH 302
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 141/305 (46%), Gaps = 31/305 (10%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARI---MDSNEIEKERGITIFSKNCSI 268
N+ I HVDHGKTTL + + K AR +D+ EK RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 69
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ +D PGHAD+ + + +D +L++ A +GPMPQTR ++G
Sbjct: 70 DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPY 129
Query: 329 IVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-----PVIYTSALHGYANENSK 382
I+V +NK D + E +++ +L + Q DF P++ SAL A E
Sbjct: 130 IIVFLNKCDMVDD--EELLELVEMEVRELLS---QYDFPGDDTPIVRGSALK--ALEGDA 182
Query: 383 ARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDV 442
+ ++ L + Y+P + + P L I + S G + GR+ G IK ++V
Sbjct: 183 EWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEV 242
Query: 443 VIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGD--IVLITGI--EEICIGSTICDPS 498
I+ + + K+ + +F R L++E +G+ VL+ GI EEI G + P
Sbjct: 243 EIVGIKETQ--KSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 296
Query: 499 --KPN 501
KP+
Sbjct: 297 TIKPH 301
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 141/305 (46%), Gaps = 31/305 (10%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARI---MDSNEIEKERGITIFSKNCSI 268
N+ I HVDHGKTTL + + K AR +D+ EK RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 69
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ +D PGHAD+ + + +D +L++ A +GPMPQTR ++G
Sbjct: 70 DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPY 129
Query: 329 IVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-----PVIYTSALHGYANENSK 382
I+V +NK D + E +++ +L + Q DF P++ SAL A E
Sbjct: 130 IIVFLNKCDMVDD--EELLELVEMEVRELLS---QYDFPGDDTPIVRGSALK--ALEGDA 182
Query: 383 ARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDV 442
+ ++ L + Y+P + + P L I + S G + GR+ G IK ++V
Sbjct: 183 EWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEV 242
Query: 443 VIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGD--IVLITGI--EEICIGSTICDPS 498
I+ + + K+ + +F R L++E +G+ VL+ GI EEI G + P
Sbjct: 243 EIVGIKETQ--KSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 296
Query: 499 --KPN 501
KP+
Sbjct: 297 TIKPH 301
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 120/275 (43%), Gaps = 18/275 (6%)
Query: 212 NIAIIAHVDHGKTTL---IDHLLRQSG--TFRKNQNINARIMDSNEIEKERGITIFSKNC 266
N+ I HVDHGKTTL I +L + G F+K + I D+ E+ RGITI + +
Sbjct: 16 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEI-----DNAPEERARGITINAAHV 70
Query: 267 SIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF 326
D PGHAD+ + +D +L++ A +GP PQTR A ++G
Sbjct: 71 EYSTAARHYAHTDCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREHLLLARQIGV 130
Query: 327 KPIVV-VNKID--RSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA 383
+ +VV VNK D + + E V +L + E+ P+I SAL + +
Sbjct: 131 EHVVVYVNKADAVQDSEXVELVELEIRELLTEFGYKGEET--PIIVGSALCALEQRDPEL 188
Query: 384 RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVV 443
++ L +A+ Y+PV + P L + S+ G + G + G +K +
Sbjct: 189 GLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECE 248
Query: 444 IMNGPDDKPNKAKINQIRVF-KGLDRVLVNEALSG 477
+ K + + I F K LDR + L
Sbjct: 249 FLG--HSKNIRTVVTGIEXFHKSLDRAEAGDNLGA 281
>pdb|2RFK|A Chain A, Substrate Rna Positioning In The Archaeal HACA
Ribonucleoprotein Complex
Length = 334
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 84/186 (45%), Gaps = 37/186 (19%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP G +S+ + IK +LN +K G+ GTL P +G+LP+ +AT+ L A K Y A
Sbjct: 49 KPPGPTSHEVVAWIKKILNLEKAGHGGTLAPKVSGVLPVALEKATRVVQALLPAGKEYVA 108
Query: 77 IIHLGITTETGDI-EGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPL 135
++HL GD+ E KII +++ F G+I Q PP+ SA+K
Sbjct: 109 LMHL-----HGDVPEDKII--------------QVMKEFEGEIIQRPPLRSAVK------ 143
Query: 136 YKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAH 195
+ R+ + R+ GTYIR L IG LG GAH
Sbjct: 144 -RRLRTRKVYYIEVLEIEGRD----------VLFRVGVEAGTYIRSLIHHIGLALGVGAH 192
Query: 196 LKYLRR 201
+ LRR
Sbjct: 193 MSELRR 198
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 134/301 (44%), Gaps = 33/301 (10%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARI---MDSNEIEKERGITIFSKNCSI 268
N+ I HVDHGKTTL + + K AR +D+ EK RGITI + +
Sbjct: 298 NVGTIGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 354
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ +D PGHAD+ + + +D +L++ A +GPMPQTR ++G
Sbjct: 355 DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPY 414
Query: 329 IVV-VNKIDRSNARPEWVVDATF--DLFDKLCATEEQLDF-----PVIYTSALHGYANEN 380
I+V +NK D + + +L Q DF P++ SAL A E
Sbjct: 415 IIVFLNKCDMVDDEELLELVEMEVRELL-------SQYDFPGDDTPIVRGSALK--ALEG 465
Query: 381 SKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQ 440
+ ++ L + Y+P + + P L I + S G + GR+ G IK +
Sbjct: 466 DAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGE 525
Query: 441 DVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGD--IVLITGI--EEICIGSTICD 496
+V I+ + + K+ + +F R L++E +G+ VL+ GI EEI G +
Sbjct: 526 EVEIVGIKETQ--KSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAK 579
Query: 497 P 497
P
Sbjct: 580 P 580
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 140/305 (45%), Gaps = 31/305 (10%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARI---MDSNEIEKERGITIFSKNCSI 268
N+ I HVDHGKTTL + + K AR +D+ EK RGITI + +
Sbjct: 298 NVGTIGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 354
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ +D PGHAD+ + + +D +L++ A +GPMPQTR ++G
Sbjct: 355 DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPY 414
Query: 329 IVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-----PVIYTSALHGYANENSK 382
I+V +NK D + +++ +L + Q DF P++ SAL A E
Sbjct: 415 IIVFLNKCDMVDDE--ELLELVEMEVRELLS---QYDFPGDDTPIVRGSALK--ALEGDA 467
Query: 383 ARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDV 442
+ ++ L + Y+P + + P L I + S G + GR+ G IK ++V
Sbjct: 468 EWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEV 527
Query: 443 VIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGD--IVLITGI--EEICIGSTICDPS 498
I+ + + K+ + +F R L++E +G+ VL+ GI EEI G + P
Sbjct: 528 EIVGIKETQ--KSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 581
Query: 499 --KPN 501
KP+
Sbjct: 582 TIKPH 586
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 141/303 (46%), Gaps = 29/303 (9%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKNC 266
N+ I HVDHGKTTL L + +N N + D +I E+ RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAA----ENRNVEVKDYGDIDKAREERARGITINTAHV 68
Query: 267 SIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF 326
E + +D GHAD+ + + +D +L++ A +G M QTR A ++G
Sbjct: 69 EYETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHILLARQVGV 128
Query: 327 KPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYA--NENSK 382
+ IVV +NK+D + R E + ++ D L E + D VI SAL ++N K
Sbjct: 129 RYIVVFMNKVDMVDDR-ELLDLVEMEVRDLLNQYEFRGDEVRVIRGSALLALEEMHKNRK 187
Query: 383 ARQG------NMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRI 436
++G + L +AI +Y+ + + +++ + + G + GRI G++
Sbjct: 188 TKRGENEWVDKIWELLDAIDEYIRTRVRDVDKRFLMRVEDVFTITGRGTVATGRIERGKV 247
Query: 437 KSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--LITGI--EEICIGS 492
K +V I+ G + K + + + R + E ++GD V L+ G+ EE+ G
Sbjct: 248 KVGDEVEIV-GLARETRKTVVTGVE----MHRKTLQEGIAGDNVGLLLRGVSREEVERGQ 302
Query: 493 TIC 495
+
Sbjct: 303 VLA 305
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 78/157 (49%), Gaps = 29/157 (18%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
+NI I AH+D GKTT + +L +G RI + T F K+
Sbjct: 8 RNIGIAAHIDAGKTTTTERILYYTG----------RIAVT---------TCFWKDH---- 44
Query: 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 330
RINIIDTPGH DF EVER + ++D +++ D+ +G PQ+ V R+A K I
Sbjct: 45 ---RINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIA 101
Query: 331 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367
NK+D++ A W+V T ++L A + P+
Sbjct: 102 FANKMDKTGAD-LWLVIRTMQ--ERLGARPVVMQLPI 135
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 15/200 (7%)
Query: 399 VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKIN 458
V +H D N PL + Y+G++ R+ SG + S V K K ++
Sbjct: 266 VEIHPD-PNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT----KGRKERVA 320
Query: 459 QIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFM 518
++ R V E +GD+ + G++E G T+ P + + +I+ P I+
Sbjct: 321 RLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVI-LESIEVPEPVIDVA 379
Query: 519 VNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIE 578
+ A +E ++ L + + RV+ + +SG GELHL I+++
Sbjct: 380 IEPKTKADQE-------KLSQALARLAEEDPTFRVSTHPETGQTI-ISGMGELHLEIIVD 431
Query: 579 NMRRE-GYELSVSRPRVIFK 597
++RE + +V +P+V ++
Sbjct: 432 RLKREFKVDANVGKPQVAYR 451
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 116/267 (43%), Gaps = 39/267 (14%)
Query: 212 NIAIIAHVDHGKTTLIDHLL---------------RQSGTFRKNQNINARIMDSNEIEKE 256
N+ +I HVDHGK+TL+ HLL Q+ + K A I+D + E+E
Sbjct: 8 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 67
Query: 257 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP---- 312
RGITI E IID PGH DF + S D +L++ A +G
Sbjct: 68 RGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMS 127
Query: 313 ---QTRFVTRKALKLGFKPIVV-VNKIDRSNA-----RPEWVVDATFDLFDKLCATEEQL 363
QTR A +G + I+V VNK+D + R E+VV L +++
Sbjct: 128 TEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKI 187
Query: 364 DFPVIYTSALHGYANENSKARQGNM-----IPLFEAILKYVPVHKDNSNNPLQLQIISLE 418
P I SA G +N R NM L EA+ + P K + PL++ + ++
Sbjct: 188 --PFIPVSAWKG---DNLIERSPNMPWYNGPTLVEALDQLQPPAKP-VDKPLRIPVQNVY 241
Query: 419 YSSYLGKIGIGRILSGRIKSLQDVVIM 445
G + +GR+ +G ++ VV M
Sbjct: 242 SIPGAGTVPVGRVETGVLRVGDKVVFM 268
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 116/267 (43%), Gaps = 39/267 (14%)
Query: 212 NIAIIAHVDHGKTTLIDHLL---------------RQSGTFRKNQNINARIMDSNEIEKE 256
N+ +I HVDHGK+TL+ HLL Q+ + K A I+D + E+E
Sbjct: 11 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 70
Query: 257 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP---- 312
RGITI E IID PGH DF + S D +L++ A +G
Sbjct: 71 RGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMS 130
Query: 313 ---QTRFVTRKALKLGFKPIVV-VNKIDRSNA-----RPEWVVDATFDLFDKLCATEEQL 363
QTR A +G + I+V VNK+D + R E+VV L +++
Sbjct: 131 TEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKI 190
Query: 364 DFPVIYTSALHGYANENSKARQGNM-----IPLFEAILKYVPVHKDNSNNPLQLQIISLE 418
P I SA G +N R NM L EA+ + P K + PL++ + ++
Sbjct: 191 --PFIPVSAWKG---DNLIERSPNMPWYNGPTLVEALDQLQPPAKP-VDKPLRIPVQNVY 244
Query: 419 YSSYLGKIGIGRILSGRIKSLQDVVIM 445
G + +GR+ +G ++ VV M
Sbjct: 245 SIPGAGTVPVGRVETGVLRVGDKVVFM 271
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 85/184 (46%), Gaps = 27/184 (14%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG 272
+ I+ HVDHGKTTL+D L RK Q M++ I + G + S +G
Sbjct: 7 VTIMGHVDHGKTTLLDKL-------RKTQ---VAAMEAGGITQHIGAFLVSLP-----SG 51
Query: 273 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVV 332
+I +DTPGHA F R + D V+L++ A +G M QT + A ++ +
Sbjct: 52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAI 111
Query: 333 NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLF 392
NK D++ A PE V +D +C + D ++ SAL G NM+ L
Sbjct: 112 NKCDKAEADPEKVKKELL-AYDVVC-EDYGGDVQAVHVSALTGE----------NMMALA 159
Query: 393 EAIL 396
EA +
Sbjct: 160 EATI 163
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 135/323 (41%), Gaps = 45/323 (13%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSG---------------TFRKNQNINARIMDSNEIEKE 256
N+ +I HVDHGK+TL+ LL G K A ++D + E+E
Sbjct: 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 67
Query: 257 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP---- 312
RG+TI E IID PGH DF + S D +L++ A +G
Sbjct: 68 RGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMS 127
Query: 313 ---QTRFVTRKALKLGF-KPIVVVNKIDRSNA-----RPEWVVDATFDLFDKLCATEEQL 363
QTR A +G + IV VNK+D + R + +VD ++
Sbjct: 128 VEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKV 187
Query: 364 DF-PVIYTSALH-GYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSS 421
F PV+ S + + +EN K G P E L + + + PL++ I + S
Sbjct: 188 RFVPVVAPSGDNITHKSENMKWYNG---PTLEEYLDQLELPPKPVDKPLRIPIQDVYSIS 244
Query: 422 YLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL 481
+G + +GR+ SG +K +V M K+ ++R + +++A GD +
Sbjct: 245 GVGTVPVGRVESGVLKVGDKIVFMPA-------GKVGEVRSIE-THHTKMDKAEPGDNIG 296
Query: 482 --ITGIE--EICIGSTICDPSKP 500
+ G+E +I G + P+ P
Sbjct: 297 FNVRGVEKKDIKRGDVVGHPNNP 319
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 133/302 (44%), Gaps = 39/302 (12%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 271
N+ I HVDHGKTTL + ++ RGITI + + +
Sbjct: 13 NVGTIGHVDHGKTTLTAAI--------------TTVLAKTYGGAARGITINTSHVEYDTP 58
Query: 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 331
+D PGHAD+ + + +D +L++ A +GPMPQTR ++G I+V
Sbjct: 59 TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 118
Query: 332 -VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-----PVIYTSALHGYANENSKARQ 385
+NK D + E +++ +L + Q DF P++ SAL A E +
Sbjct: 119 FLNKCDMVDD--EELLELVEMEVRELLS---QYDFPGDDTPIVRGSALK--ALEGDAEWE 171
Query: 386 GNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 445
++ L + Y+P + + P L I + S G + GR+ G IK ++V I+
Sbjct: 172 AKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIV 231
Query: 446 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGD--IVLITGI--EEICIGSTICDPS--K 499
+ K+ + +F R L++E +G+ VL+ GI EEI G + P K
Sbjct: 232 G--IKETQKSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIK 285
Query: 500 PN 501
P+
Sbjct: 286 PH 287
>pdb|3U28|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
pdb|3UAI|A Chain A, Structure Of The Shq1-Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
Length = 400
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 86/210 (40%), Gaps = 32/210 (15%)
Query: 10 SVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSE 69
S VI KP SS+ + IK +L +K G++GTLDP TG L +C AT+
Sbjct: 59 SGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQG 118
Query: 70 ADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALK 129
A K Y I+ L + K++ S+E N G + Q PP+ SA+K
Sbjct: 119 AGKEYVCIVRL----------HDALKDEKDLGRSLE-------NLTGALFQRPPLISAVK 161
Query: 130 YKGIPLYKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDIGKM 189
+ + + S C GTY+R L +G +
Sbjct: 162 -RQLRVRTIYESNLIEFDNKRNLG--------------VFWASCEAGTYMRTLCVHLGML 206
Query: 190 LGCGAHLKYLRRIGIDKLTLDKNIAIIAHV 219
LG G H++ LRR+ L+ + N+ + V
Sbjct: 207 LGVGGHMQELRRVRSGALSENDNMVTLHDV 236
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 2/140 (1%)
Query: 202 IGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNI--NARIMDSNEIEKERGI 259
+G + + + +A++ H GKTTL + LL ++G + + D K
Sbjct: 1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRT 60
Query: 260 TIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTR 319
T+ + + + G R+ ++D PG+ DF GE+ L D L+ + A G T
Sbjct: 61 TVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWT 120
Query: 320 KALKLGFKPIVVVNKIDRSN 339
A +LG +VVV K+D+
Sbjct: 121 VAERLGLPRMVVVTKLDKGG 140
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 99/223 (44%), Gaps = 25/223 (11%)
Query: 381 SKARQGNMIPLFEAILKYVPVHKDN-SNNPLQLQIISLEYSSYLGKIGIGRILSGRIK-- 437
S R+ ++PL E IL+ +P + + P ++ ++ ++G++ R+ GR+K
Sbjct: 254 SGEREIGVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPG 313
Query: 438 -SLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICD 496
SLQ + + ++ + V G D + V EA +G ++ + E + G +
Sbjct: 314 DSLQS---------EAGQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQ 364
Query: 497 PSKPNG--LPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVT 554
KP +P + +P + + R G+ + R++ ++ + L++
Sbjct: 365 GEKPESEEVPFARLPDPNVPVALHPKGRTDEARLGEAL--RKL-------LEEDPSLKLE 415
Query: 555 QNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFK 597
+ + + + G GELHL E ++ G E+ S P+V ++
Sbjct: 416 RQEETGELL-LWGHGELHLATAKERLQDYGVEVEFSVPKVPYR 457
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 53/166 (31%), Positives = 73/166 (43%), Gaps = 31/166 (18%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERG-ITIFSKNCSIEYN 271
+ I+ HVDHGKTTL+D I S E+E G IT + N
Sbjct: 11 VTIMGHVDHGKTTLLD-----------------AIRHSKVTEQEAGGITQHIGAYQVTVN 53
Query: 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 331
+I +DTPGH F R + D V+L++ A +G MPQT A IV
Sbjct: 54 DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVA 113
Query: 332 VNKIDRSNARPEWVVDATFD------------LFDKLCA-TEEQLD 364
+NK+D+ A P+ V+ + +F KL A T+E LD
Sbjct: 114 INKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLD 159
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 35/257 (13%)
Query: 212 NIAIIAHVDHGKTTLIDHLL-----RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNC 266
NI ++ HVDHGKTTL L S R+ I D+ EI + +S +
Sbjct: 13 NIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADA-EIRRCSNCGRYSTSP 71
Query: 267 SIEYNG------TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVE-GPMPQTRFVTR 319
Y G R++ ID+PGH + S++D +L+I A E P PQTR
Sbjct: 72 ICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM 131
Query: 320 KALKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYAN 378
+G K I++ NKI+ + F K E + P+I SALHG
Sbjct: 132 ALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIKGTVAE---NAPIIPISALHG--- 185
Query: 379 ENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQII--------SLEYSSYLGKIGIGR 430
N+ L +AI +++P K +SN P ++ ++ +G + G
Sbjct: 186 -------ANIDVLVKAIEEFIPTPKRDSNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGS 238
Query: 431 ILSGRIKSLQDVVIMNG 447
I+ G++K ++ I G
Sbjct: 239 IVQGKLKVGDEIEIRPG 255
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 135/323 (41%), Gaps = 50/323 (15%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTF---------RKNQNIN------ARIMDSNEIEKE 256
N+ I HVD GK+T+ ++ +G R+ + N + +D+N+ E++
Sbjct: 19 NVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 78
Query: 257 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP---- 312
+G T+ E I+D PGH F + S D +L+I A +G
Sbjct: 79 KGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFE 138
Query: 313 ---QTRFVTRKALKLGFKP-IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF--- 365
QTR A G K IV++NK+D W + + +KL +++ F
Sbjct: 139 KGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN--WSNERYEECKEKLVPFLKKVGFNPK 196
Query: 366 PVIYTSALHGYANENSKARQGNMIPLFEAI-----LKYVPVHKDNSNNPLQLQIISLEYS 420
I+ G N K Q + P + + L +P + + P++L I+ +Y
Sbjct: 197 KDIHFMPCSGLTGANLK-EQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVD-KYK 254
Query: 421 SYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKG---LDRVLVNEALSG 477
+G + +G++ SG I Q +V+M PNK + + + D V E L
Sbjct: 255 D-MGTVVLGKLESGSIFKGQQLVMM------PNKHNVEVLGILSDDTETDFVAPGENLK- 306
Query: 478 DIVLITGI--EEICIGSTICDPS 498
+ + GI EEI G +CDPS
Sbjct: 307 --IRLKGIEEEEILPGFILCDPS 327
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 68/130 (52%), Gaps = 8/130 (6%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQSGTFRK----NQNINARIMDSNEIEKERGITIFSKNCSI 268
++++ HVDHGKTTL+DH+ + R+ Q+I A + + IE G F K SI
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICG--DFLKKFSI 65
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ IDTPGH F +R ++ D +L++D EG PQT+ L++ P
Sbjct: 66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEAL-NILRMYRTP 124
Query: 329 IVV-VNKIDR 337
VV NKIDR
Sbjct: 125 FVVAANKIDR 134
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 111/257 (43%), Gaps = 35/257 (13%)
Query: 212 NIAIIAHVDHGKTTLIDHLL-----RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNC 266
NI ++ HVDHGKTTL L S R+ I D+ EI + +S +
Sbjct: 12 NIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADA-EIRRCPNCGRYSTSP 70
Query: 267 SIEYNG------TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVE-GPMPQTRFVTR 319
Y G R++ ID PGH + S++D +L+I A E P PQTR
Sbjct: 71 VCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM 130
Query: 320 KALKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYAN 378
+G K I++ NKI+ + E ++ + + + T + + P+I SALHG
Sbjct: 131 ALQIIGQKNIIIAQNKIELVDK--EKALENYRQIKEFIEGTVAE-NAPIIPISALHG--- 184
Query: 379 ENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQII--------SLEYSSYLGKIGIGR 430
N+ L +AI ++P K + N P ++ ++ +G + G
Sbjct: 185 -------ANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGS 237
Query: 431 ILSGRIKSLQDVVIMNG 447
I+ G++K ++ I G
Sbjct: 238 IVQGKLKVGDEIEIRPG 254
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 111/257 (43%), Gaps = 35/257 (13%)
Query: 212 NIAIIAHVDHGKTTLIDHLL-----RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNC 266
NI ++ HVDHGKTTL L S R+ I D+ EI + +S +
Sbjct: 12 NIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADA-EIRRCPNCGRYSTSP 70
Query: 267 SIEYNG------TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVE-GPMPQTRFVTR 319
Y G R++ ID PGH + S++D +L+I A E P PQTR
Sbjct: 71 VCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM 130
Query: 320 KALKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYAN 378
+G K I++ NKI+ + E ++ + + + T + + P+I SALHG
Sbjct: 131 ALQIIGQKNIIIAQNKIELVDK--EKALENYRQIKEFIEGTVAE-NAPIIPISALHG--- 184
Query: 379 ENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQII--------SLEYSSYLGKIGIGR 430
N+ L +AI ++P K + N P ++ ++ +G + G
Sbjct: 185 -------ANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLGGS 237
Query: 431 ILSGRIKSLQDVVIMNG 447
I+ G++K ++ I G
Sbjct: 238 IVQGKLKVGDEIEIRPG 254
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 108/264 (40%), Gaps = 39/264 (14%)
Query: 212 NIAIIAHVDHGKTTLIDHLL---------------RQSGTFRKNQNINARIMDSNEIEKE 256
N+ +I HVD GK+T HL+ +++ K A ++D + E+E
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 68
Query: 257 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP---- 312
RGITI E ++ +ID PGH DF + S D +L+I G
Sbjct: 69 RGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGIS 128
Query: 313 ---QTRFVTRKALKLGFKP-IVVVNKIDR---SNARPEWVVDATFDLFDKLCATEEQLDF 365
QTR A LG + IV VNK+D +R + +V T + K+ + + F
Sbjct: 129 KDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPF 188
Query: 366 PVI----------YTSALHGYANENSKARQGNM--IPLFEAILKYVPVHKDNSNNPLQLQ 413
I T+ Y + + G + L EAI + ++ PL+L
Sbjct: 189 VPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAI-DAIEQPSRPTDKPLRLP 247
Query: 414 IISLEYSSYLGKIGIGRILSGRIK 437
+ + +G + +GR+ +G IK
Sbjct: 248 LQDVYKIGGIGTVPVGRVETGVIK 271
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 115/269 (42%), Gaps = 42/269 (15%)
Query: 206 KLTLDKNIAIIAHVDHGKTTLIDHLL-----RQSGTFRKNQNINARIMDSN--EIEKERG 258
K+ + NI ++ HVDHGKTTL+ + + S ++ I ++N E +
Sbjct: 5 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKK 64
Query: 259 ITIFSKNCSIEYNGT--------RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG- 309
+ S + G+ RI+ ID PGH + +++D +L++ A E
Sbjct: 65 PEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPF 124
Query: 310 PMPQTR--FVTRKALKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366
P PQTR FV +G K +++V NK+D + F K E + P
Sbjct: 125 PQPQTREHFVALGI--IGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAE---NVP 179
Query: 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYVPV-HKDNSNNPLQLQIISL-------E 418
+I SALH N+ L E I +Y+ ++D S P+ L I S +
Sbjct: 180 IIPVSALHKI----------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQ 229
Query: 419 YSSYLGKIGIGRILSGRIKSLQDVVIMNG 447
++ G + G I+ G K Q++ ++ G
Sbjct: 230 FNELKGGVIGGSIIQGLFKVDQEIKVLPG 258
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 115/269 (42%), Gaps = 42/269 (15%)
Query: 206 KLTLDKNIAIIAHVDHGKTTLIDHLL-----RQSGTFRKNQNINARIMDSN--EIEKERG 258
K+ + NI ++ HVDHGKTTL+ + + S ++ I ++N E +
Sbjct: 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKK 63
Query: 259 ITIFSKNCSIEYNGT--------RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG- 309
+ S + G+ RI+ ID PGH + +++D +L++ A E
Sbjct: 64 PEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPF 123
Query: 310 PMPQTR--FVTRKALKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366
P PQTR FV +G K +++V NK+D + F K E + P
Sbjct: 124 PQPQTREHFVALGI--IGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAE---NVP 178
Query: 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYVPV-HKDNSNNPLQLQIISL-------E 418
+I SALH N+ L E I +Y+ ++D S P+ L I S +
Sbjct: 179 IIPVSALHKI----------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQ 228
Query: 419 YSSYLGKIGIGRILSGRIKSLQDVVIMNG 447
++ G + G I+ G K Q++ ++ G
Sbjct: 229 FNELKGGVIGGSIIQGLFKVDQEIKVLPG 257
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 114/261 (43%), Gaps = 37/261 (14%)
Query: 206 KLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQ----NINARIMDSNEIEKERGITI 261
K+ + NI ++ HVDHGKTTL+ + +G + + N + +S + +
Sbjct: 4 KVQPEVNIGVVGHVDHGKTTLVQAI---TGIWTSKKLGYAETNIGVCESCKKPEAYVTEP 60
Query: 262 FSKNCSIEYNGT---RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQTR-- 315
K+C + RI+ ID PGH + +++D +L++ A E P PQTR
Sbjct: 61 SCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREH 120
Query: 316 FVTRKALKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALH 374
FV +G K +++V NK+D + F K E + P+I SALH
Sbjct: 121 FVALGI--IGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAE---NVPIIPVSALH 175
Query: 375 GYANENSKARQGNMIPLFEAILKYVPV-HKDNSNNPLQLQIISL-------EYSSYLGKI 426
N+ L E I +Y+ ++D S P+ L I S +++ G +
Sbjct: 176 KI----------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGV 225
Query: 427 GIGRILSGRIKSLQDVVIMNG 447
G I+ G K Q++ ++ G
Sbjct: 226 IGGSIIQGLFKVDQEIKVLPG 246
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 67/130 (51%), Gaps = 8/130 (6%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQSGTFRK----NQNINARIMDSNEIEKERGITIFSKNCSI 268
++++ HVDHGKTTL+DH+ + R+ Q+I A + + IE G F K SI
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPXDVIEGICG--DFLKKFSI 65
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ IDTPGH F +R ++ D +L++D EG PQT+ L+ P
Sbjct: 66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEAL-NILRXYRTP 124
Query: 329 IVV-VNKIDR 337
VV NKIDR
Sbjct: 125 FVVAANKIDR 134
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 113/264 (42%), Gaps = 37/264 (14%)
Query: 206 KLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSN--EIEKERGITIFS 263
K+ + NI ++ HVDHGKTTL+ + + + I ++N E + +
Sbjct: 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEETIKLGYAETNIGVCESCKKPEAYV 63
Query: 264 KNCSIEYNGT--------RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQT 314
S + G+ RI+ ID PGH + +++D +L++ A E P PQT
Sbjct: 64 TEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT 123
Query: 315 R--FVTRKALKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTS 371
R FV +G K +++V NK+D + F K E + P+I S
Sbjct: 124 REHFVALGI--IGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAE---NVPIIPVS 178
Query: 372 ALHGYANENSKARQGNMIPLFEAILKYVPV-HKDNSNNPLQLQIISL-------EYSSYL 423
ALH N+ L E I +Y+ ++D S P+ L I S +++
Sbjct: 179 ALHKI----------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELK 228
Query: 424 GKIGIGRILSGRIKSLQDVVIMNG 447
G + G I+ G K Q++ ++ G
Sbjct: 229 GGVIGGSIIQGLFKVDQEIKVLPG 252
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 271
N+ I H+DHGKTTL L + T + + ++ +S ++RGITI + +
Sbjct: 21 NLGIFGHIDHGKTTLSKVLTEIAST-----SAHDKLPES----QKRGITIDIGFSAFKLE 71
Query: 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQT 314
RI ++D PGHAD V ++D L+++DA EGP QT
Sbjct: 72 NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQT 114
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 107/257 (41%), Gaps = 35/257 (13%)
Query: 212 NIAIIAHVDHGKTTLIDHLL-----RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNC 266
NI + HVDHGKTTL L S R+ I D+ EI + +S +
Sbjct: 12 NIGXVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADA-EIRRCPNCGRYSTSP 70
Query: 267 SIEYNG------TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVE-GPMPQTRFVTR 319
Y G R++ ID PGH S+ D +L+I A E P PQTR
Sbjct: 71 VCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAANEPCPRPQTREHLX 130
Query: 320 KALKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYAN 378
+G K I++ NKI+ + E ++ + + + T + + P+I SALHG
Sbjct: 131 ALQIIGQKNIIIAQNKIELVDK--EKALENYRQIKEFIEGTVAE-NAPIIPISALHG--- 184
Query: 379 ENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQII--------SLEYSSYLGKIGIGR 430
N+ L +AI ++P K + N P + ++ +G + G
Sbjct: 185 -------ANIDVLVKAIEDFIPTPKRDPNKPPKXLVLRSFDVNKPGTPPEKLVGGVLGGS 237
Query: 431 ILSGRIKSLQDVVIMNG 447
I+ G++K ++ I G
Sbjct: 238 IVQGKLKVGDEIEIRPG 254
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 112/267 (41%), Gaps = 37/267 (13%)
Query: 212 NIAIIAHVDHGKTTL---------------IDHLLRQSGTFRKNQNINARIMDSNEIEKE 256
NI I HVD GK+TL ++ + R++ K + +DS E+E
Sbjct: 45 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 104
Query: 257 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP---- 312
+G T+ E R +++D PGH + + S D +L+I A G
Sbjct: 105 KGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFE 164
Query: 313 ---QTRFVTRKALKLGFKPIVVV-NKIDR-----SNARPEWVVDATFDLFDKLCATEEQL 363
QTR A G +VVV NK+D S R + VD ++ +
Sbjct: 165 RGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKT 224
Query: 364 DFPVIYTSALHGYANENSKAR-QGNMIPLFE--AILKYVP--VHKDNSNNPLQLQIISLE 418
D + SA Y +N K R ++ P ++ ++L+Y+ H + N + I+ +
Sbjct: 225 DVKYMPVSA---YTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIASK 281
Query: 419 YSSYLGKIGIGRILSGRIKSLQDVVIM 445
Y LG I G+I +G IK +V++M
Sbjct: 282 YKD-LGTILEGKIEAGSIKKNSNVLVM 307
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 90/209 (43%), Gaps = 27/209 (12%)
Query: 212 NIAIIAHVDHGKTTLIDHLL-----RQSGTFRKNQNINARIMDSNEIEKERGITIFSK-- 264
NI ++ HVDHGKT+L L R S R+ +I D EI K ++
Sbjct: 10 NIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADC-EIRKCPQCGTYTTKP 68
Query: 265 ---NCSIEYNG-TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVE-GPMPQTRFVTR 319
NC E R++ +D+PGH + S++D +L+I A E P PQT+
Sbjct: 69 RCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM 128
Query: 320 KALKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYAN 378
LG I++V NKID + E + ++ + + P+I SA H
Sbjct: 129 ALEILGIDKIIIVQNKIDLVD---EKQAEENYEQIKEFVKGTIAENAPIIPISAHH---- 181
Query: 379 ENSKARQGNMIPLFEAILKYVPVHKDNSN 407
+ N+ L +AI ++P K + +
Sbjct: 182 ------EANIDVLLKAIQDFIPTPKRDPD 204
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 16/133 (12%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG 272
+ I+ HVDHGKT+L++++ + I I + +E E G+ F
Sbjct: 7 VTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHI-GAYHVETENGMITF---------- 55
Query: 273 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVV 332
+DTPGHA F R D V+L++ A +G MPQT + A +V V
Sbjct: 56 -----LDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAV 110
Query: 333 NKIDRSNARPEWV 345
NKID+ A P+ V
Sbjct: 111 NKIDKPEADPDRV 123
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 19/112 (16%)
Query: 212 NIAIIAHVDHGKTTLIDHLL---------------RQSGTFRKNQNINARIMDSNEIEKE 256
+ ++ HVD GK+TL+ LL R+S T K+ A IMD E+E
Sbjct: 35 SFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERE 94
Query: 257 RGITIFSKNCSIEYNGTRIN--IIDTPGHADFGGEVERILSMVDNVLLLIDA 306
RG+T+ C+ ++ R N I+D PGH DF +S D +L +D
Sbjct: 95 RGVTV--SICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDC 144
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 117/256 (45%), Gaps = 25/256 (9%)
Query: 258 GITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFV 317
GITI + + + +D PGHAD+ + + +D +L++ A +GPMPQTR
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 318 TRKALKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-----PVIYTS 371
++G I+V +NK D + E +++ +L + Q DF P++ S
Sbjct: 61 ILLGRQVGVPYIIVFLNKCDMVDD--EELLELVEMEVRELLS---QYDFPGDDTPIVRGS 115
Query: 372 ALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRI 431
AL A E + ++ L + Y+P + + P L I + S G + GR+
Sbjct: 116 ALK--ALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRV 173
Query: 432 LSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGD--IVLITGI--EE 487
G IK ++V I+ + K+ + +F R L++E +G+ VL+ GI EE
Sbjct: 174 ERGIIKVGEEVEIVG--IKETQKSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREE 227
Query: 488 ICIGSTICDPS--KPN 501
I G + P KP+
Sbjct: 228 IERGQVLAKPGTIKPH 243
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 116/256 (45%), Gaps = 25/256 (9%)
Query: 258 GITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFV 317
GITI + + + +D PGHAD+ + + +D +L++ A +GPMPQTR
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 318 TRKALKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-----PVIYTS 371
++G I+V +NK D + +++ +L + Q DF P++ S
Sbjct: 61 ILLGRQVGVPYIIVFLNKCDMVDDE--ELLELVEMEVRELLS---QYDFPGDDTPIVRGS 115
Query: 372 ALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRI 431
AL A E + ++ L + Y+P + + P L I + S G + GR+
Sbjct: 116 ALK--ALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRV 173
Query: 432 LSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGD--IVLITGI--EE 487
G IK ++V I+ + K+ + +F R L++E +G+ VL+ GI EE
Sbjct: 174 ERGIIKVGEEVEIVG--IKETQKSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREE 227
Query: 488 ICIGSTICDPS--KPN 501
I G + P KP+
Sbjct: 228 IERGQVLAKPGTIKPH 243
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 27/150 (18%)
Query: 212 NIAIIAHVDHGKTTLIDHLL---------------RQSGTFRKNQNINARIMDSNEIEKE 256
+ ++ HVD GK+TL+ LL R+S T K+ A IMD E+E
Sbjct: 169 SFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERE 228
Query: 257 RGITIFSKNCSIEYNGTRIN--IIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP-- 312
RG+T+ C+ ++ R N I+D PGH DF +S D +L +D
Sbjct: 229 RGVTV--SICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESG 286
Query: 313 -----QTRFVTRKALKLGFKP-IVVVNKID 336
QT+ A LG I+ +NK+D
Sbjct: 287 FDLDGQTKEHMLLASSLGIHNLIIAMNKMD 316
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 80/178 (44%), Gaps = 38/178 (21%)
Query: 181 VLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLL--------- 231
++SEDI LG + LR + +VD GK+TLI LL
Sbjct: 7 LISEDILAYLGQHERKEXLRFL------------TCGNVDDGKSTLIGRLLHDSKXIYED 54
Query: 232 ---------RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT---RINIID 279
++SGT + ++ A ++D + E+E+GITI + + Y T + I D
Sbjct: 55 HLEAITRDSKKSGTTGDDVDL-ALLVDGLQAEREQGITI---DVAYRYFSTAKRKFIIAD 110
Query: 280 TPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV-VNKID 336
TPGH + S D ++L+DA G QTR + A LG K IVV +NK D
Sbjct: 111 TPGHEQYTRNXATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKXD 168
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 19/112 (16%)
Query: 212 NIAIIAHVDHGKTTLIDHLL---------------RQSGTFRKNQNINARIMDSNEIEKE 256
+ ++ HVD GK+TL LL R+S T K+ A I D E+E
Sbjct: 35 SFVVLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXDQTNEERE 94
Query: 257 RGITIFSKNCSIEYNGTRIN--IIDTPGHADFGGEVERILSMVDNVLLLIDA 306
RG+T+ C+ ++ R N I+D PGH DF +S D +L +D
Sbjct: 95 RGVTV--SICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVDC 144
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 23/148 (15%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTF--RKNQNIN-------------ARIMDSNEIEKE 256
++ + HVD GK+T++ ++ + G R Q ++ A ++D+ E E+
Sbjct: 179 HLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERA 238
Query: 257 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP---- 312
RG+T+ + + E + I D PGH DF + S D +L++D+ +
Sbjct: 239 RGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFL 298
Query: 313 ---QTRFVTRKALKLGFKPIVV-VNKID 336
QTR LG IVV VNK+D
Sbjct: 299 ENGQTREHAYLLRALGISEIVVSVNKLD 326
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 25/191 (13%)
Query: 213 IAIIAHVDHGKTTLIDHLL--RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
+AI+ + GK+TL+++LL + S K R++ I E I IF I Y
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQI-IFLDTPGI-Y 70
Query: 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-I 329
+ +++ GH+ ++ L D +L +IDA EG P+ + + +K KP I
Sbjct: 71 EPKKSDVL---GHS-MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVI 126
Query: 330 VVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMI 389
VV+NKID+ L D++ +L ++ SAL G N+
Sbjct: 127 VVINKIDKIGP-----AKNVLPLIDEIHKKHPELT-EIVPISALKG----------ANLD 170
Query: 390 PLFEAILKYVP 400
L + ILKY+P
Sbjct: 171 ELVKTILKYLP 181
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 25/191 (13%)
Query: 213 IAIIAHVDHGKTTLIDHLL--RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
+AI+ + GK+TL+++LL + S K R++ I E I IF I Y
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQI-IFLDTPGI-Y 69
Query: 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-I 329
+ +++ GH+ ++ L D +L +IDA EG P+ + + +K KP I
Sbjct: 70 EPKKSDVL---GHS-MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVI 125
Query: 330 VVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMI 389
VV+NKID+ L D++ +L ++ SAL G N+
Sbjct: 126 VVINKIDKIGP-----AKNVLPLIDEIHKKHPELT-EIVPISALKG----------ANLD 169
Query: 390 PLFEAILKYVP 400
L + ILKY+P
Sbjct: 170 ELVKTILKYLP 180
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 35.8 bits (81), Expect = 0.095, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 262 FSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVE-GPMPQTRFVTRK 320
++K C I+ R++I+DT G +FG E+ + + LL+ + G + R+
Sbjct: 42 YTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQ 101
Query: 321 ALKLG----FKPIVVVNKIDRSNAR 341
L++ F I++ NK D + R
Sbjct: 102 ILRVKDRDEFPMILIGNKADLDHQR 126
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 43/175 (24%)
Query: 207 LTLDKN----IAIIAHVDHGKTTLIDHLLRQ--SGTFRKNQNINARIMDSNEIEKERGIT 260
+++DK+ IAI+ + GK+TL++ LL Q S T RK Q RI+
Sbjct: 1 MSIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIV------------ 48
Query: 261 IFSKNCSIEYNGTRINI-IDTPG-HADFGGEVERIL-----SMVDNVLLLIDAVEGP--M 311
I G I +DTPG H + + R++ S + +V L+I VEG
Sbjct: 49 ------GIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT 102
Query: 312 PQTRFVTRKALKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365
P V K L+ G P+++ VNK+D V DL L Q++F
Sbjct: 103 PDDEMVLNK-LREGKAPVILAVNKVDN--------VQEKADLLPHLQFLASQMNF 148
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 25/154 (16%)
Query: 258 GITIFSKNCSIEYNGTRINIIDTPGHADFG-GEVERILSM-------VDNVLLLIDAVEG 309
G+T+ K Y G IN+ID PG G ++ ++ D V+L+ D+V
Sbjct: 37 GVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP 96
Query: 310 PMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIY 369
Q+ ++ + L++ K I+ + ID + D ++ ++ L PV++
Sbjct: 97 --EQSLYLLLEILEMEKKVILAMTAIDEAKK-----TGMKIDRYE----LQKHLGIPVVF 145
Query: 370 TSALHGYANENSKAR-----QGNMIPLFEAILKY 398
TS++ G E K + Q N I L IL Y
Sbjct: 146 TSSVTGEGLEELKEKIVEYAQKNTI-LHRMILDY 178
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 70/165 (42%), Gaps = 39/165 (23%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQ--SGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
IAI+ + GK+TL++ LL Q S T RK Q RI+ I
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIV------------------GIHT 49
Query: 271 NGTRINI-IDTPG-HADFGGEVERIL-----SMVDNVLLLIDAVEGP--MPQTRFVTRKA 321
G I +DTPG H + + R++ S + +V L+I VEG P V K
Sbjct: 50 EGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNK- 108
Query: 322 LKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365
L+ G P+++ VNK+D V DL L Q++F
Sbjct: 109 LREGKAPVILAVNKVDN--------VQEKADLLPHLQFLASQMNF 145
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 19/135 (14%)
Query: 258 GITIFSKNCSIEYNGTRINIIDTPGHADFG-GEVERILSM-------VDNVLLLIDAVEG 309
G+T+ K Y G IN+ID PG G ++ ++ D V+L+ D+V
Sbjct: 37 GVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP 96
Query: 310 PMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIY 369
Q+ ++ + L++ K I+ + ID + D ++ ++ L PV++
Sbjct: 97 --EQSLYLLLEILEMEKKVILAMTAIDEAKK-----TGMKIDRYE----LQKHLGIPVVF 145
Query: 370 TSALHGYANENSKAR 384
TS++ G E K +
Sbjct: 146 TSSVTGEGLEELKEK 160
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 32/154 (20%)
Query: 213 IAIIAHVDHGKTTLIDHLL--RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
+AI+ + GK+TL+++LL + + + Q R+ RGI +
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRL---------RGILTEGRR----- 55
Query: 271 NGTRINIIDTPG-HADFGG-------EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKAL 322
+I +DTPG H EV L+ V+ V+ ++D P P+ V R AL
Sbjct: 56 ---QIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVAR-AL 111
Query: 323 K--LGFKPIVVV-NKIDRSNARPEWVVDATFDLF 353
K +G PI++V NK+D + PE + A +L
Sbjct: 112 KPLVGKVPILLVGNKLDAAK-YPEEAMKAYHELL 144
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 258 GITIFSKNCSIEYNGTRINIIDTPG-HADFGGEVERILS-------MVDNVLLLIDAVEG 309
G+T+ K EYNG + ++D PG ++ ++ I++ D V+ ++DA
Sbjct: 39 GVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDAT-- 96
Query: 310 PMPQTRFVTRKALKLGFKPIVVVNKIDRSNA 340
+ + ++T + +++G ++ +NK+D + +
Sbjct: 97 ALERNLYLTLQLMEMGANLLLALNKMDLAKS 127
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 258 GITIFSKNCSIEYNGTRINIIDTPG-HADFGGEVERILS-------MVDNVLLLIDAVEG 309
G+T+ K EYNG + ++D PG ++ ++ I++ D V+ ++DA
Sbjct: 35 GVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDAT-- 92
Query: 310 PMPQTRFVTRKALKLGFKPIVVVNKIDRSNA 340
+ + ++T + +++G ++ +NK+D + +
Sbjct: 93 ALERNLYLTLQLMEMGANLLLALNKMDLAKS 123
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 258 GITIFSKNCSIEYNGTRINIIDTPG-HADFGGEVERILS-------MVDNVLLLIDAVEG 309
G+T+ K EYNG + ++D PG ++ ++ I++ D V+ ++DA
Sbjct: 35 GVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDAT-- 92
Query: 310 PMPQTRFVTRKALKLGFKPIVVVNKIDRSNA 340
+ + ++T + +++G ++ +NK+D + +
Sbjct: 93 ALERNLYLTLQLMEMGANLLLALNKMDLAKS 123
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 17/83 (20%)
Query: 268 IEYNGTRINIIDTPGHADFGGEVERI--------LSMVDNVLLLI-----DAVEGPMPQT 314
I +G ++IIDT G + EVERI + D VL ++ DAV+
Sbjct: 47 IHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWP 106
Query: 315 RFVTRKALKLGFKPIVVV-NKID 336
F+ R KL PI VV NK D
Sbjct: 107 EFIARLPAKL---PITVVRNKAD 126
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 17/83 (20%)
Query: 268 IEYNGTRINIIDTPGHADFGGEVERI--------LSMVDNVLLLI-----DAVEGPMPQT 314
I +G ++IIDT G + EVERI + D VL ++ DAV+
Sbjct: 50 IHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWP 109
Query: 315 RFVTRKALKLGFKPIVVV-NKID 336
F+ R KL PI VV NK D
Sbjct: 110 EFIARLPAKL---PITVVRNKAD 129
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 17/83 (20%)
Query: 268 IEYNGTRINIIDTPGHADFGGEVERI--------LSMVDNVLLLI-----DAVEGPMPQT 314
I +G ++IIDT G + EVERI + D VL + DAV+
Sbjct: 47 IHIDGXPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFXVDGTTTDAVDPAEIWP 106
Query: 315 RFVTRKALKLGFKPIVVV-NKID 336
F+ R KL PI VV NK D
Sbjct: 107 EFIARLPAKL---PITVVRNKAD 126
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 258 GITIFSKNCSIEYNGTRINIIDTPG-HADFGGEVERILS-------MVDNVLLLIDAVEG 309
G+T+ K EYNG + ++D PG ++ ++ I++ D V+ ++DA
Sbjct: 36 GVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDAT-- 93
Query: 310 PMPQTRFVTRKALKLGFKPIVVVNKIDRSNA 340
+ + ++T + + G ++ +NK D + +
Sbjct: 94 ALERNLYLTLQLXEXGANLLLALNKXDLAKS 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.140 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,213,452
Number of Sequences: 62578
Number of extensions: 1020846
Number of successful extensions: 2846
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2531
Number of HSP's gapped (non-prelim): 173
length of query: 793
length of database: 14,973,337
effective HSP length: 107
effective length of query: 686
effective length of database: 8,277,491
effective search space: 5678358826
effective search space used: 5678358826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)