BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1760
(793 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0A3B4|TYPA_SHIFL GTP-binding protein TypA/BipA OS=Shigella flexneri GN=typA PE=3
SV=1
Length = 607
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/565 (55%), Positives = 423/565 (74%), Gaps = 5/565 (0%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
+NIAIIAHVDHGKTTL+D LL+QSGTF R+MDSN++EKERGITI +KN +I++
Sbjct: 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW 65
Query: 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 330
N RINI+DTPGHADFGGEVER++SMVD+VLL++DA +GPMPQTRFVT+KA G KPIV
Sbjct: 66 NDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIV 125
Query: 331 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP 390
V+NK+DR ARP+WVVD FDLF L AT+EQLDFP++Y SAL+G A + + +M P
Sbjct: 126 VINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTP 185
Query: 391 LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDD 450
L++AI+ +VP + + P Q+QI L+Y+SY+G IGIGRI G++K Q V I++ +
Sbjct: 186 LYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDS-EG 244
Query: 451 KPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDE 510
K AK+ ++ GL+R+ + A +GDIV ITG+ E+ I T+CD LP L++DE
Sbjct: 245 KTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDE 304
Query: 511 PTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGE 570
PT+++ F VN SP G+EGKF+T+RQI +RL+ E+ +N+ LRV + + D+ + VSGRGE
Sbjct: 305 PTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADA-FRVSGRGE 363
Query: 571 LHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRG 630
LHL++LIENMRREG+EL+VSRP+VIF+ ++G EPYEN+ +D+EE +QG +MQ L R
Sbjct: 364 LHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERK 423
Query: 631 GDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDL 690
GDLKN+ + K RVRL+Y IPSRGLIGF++EF+T+T GTGL+ F Y + ++
Sbjct: 424 GDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYD---DVRPGEV 480
Query: 691 GKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKE 750
G+R+NGVLIS GKAVA++L+ LQDRG+LF+ H VYEG IIGIHSR NDL VN +
Sbjct: 481 GQRQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTG 540
Query: 751 KQLTNIRSSGSDEAIQLINIIKIIL 775
K+LTN+R+SG+DEA+ L+ I++ L
Sbjct: 541 KKLTNMRASGTDEAVVLVPPIRMTL 565
>sp|P32132|TYPA_ECOLI GTP-binding protein TypA/BipA OS=Escherichia coli (strain K12)
GN=typA PE=1 SV=2
Length = 607
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/565 (55%), Positives = 423/565 (74%), Gaps = 5/565 (0%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
+NIAIIAHVDHGKTTL+D LL+QSGTF R+MDSN++EKERGITI +KN +I++
Sbjct: 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW 65
Query: 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 330
N RINI+DTPGHADFGGEVER++SMVD+VLL++DA +GPMPQTRFVT+KA G KPIV
Sbjct: 66 NDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIV 125
Query: 331 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP 390
V+NK+DR ARP+WVVD FDLF L AT+EQLDFP++Y SAL+G A + + +M P
Sbjct: 126 VINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTP 185
Query: 391 LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDD 450
L++AI+ +VP + + P Q+QI L+Y+SY+G IGIGRI G++K Q V I++ +
Sbjct: 186 LYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDS-EG 244
Query: 451 KPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDE 510
K AK+ ++ GL+R+ + A +GDIV ITG+ E+ I T+CD LP L++DE
Sbjct: 245 KTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDE 304
Query: 511 PTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGE 570
PT+++ F VN SP G+EGKF+T+RQI +RL+ E+ +N+ LRV + + D+ + VSGRGE
Sbjct: 305 PTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADA-FRVSGRGE 363
Query: 571 LHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRG 630
LHL++LIENMRREG+EL+VSRP+VIF+ ++G EPYEN+ +D+EE +QG +MQ L R
Sbjct: 364 LHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERK 423
Query: 631 GDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDL 690
GDLKN+ + K RVRL+Y IPSRGLIGF++EF+T+T GTGL+ F Y + ++
Sbjct: 424 GDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYD---DVRPGEV 480
Query: 691 GKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKE 750
G+R+NGVLIS GKAVA++L+ LQDRG+LF+ H VYEG IIGIHSR NDL VN +
Sbjct: 481 GQRQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTG 540
Query: 751 KQLTNIRSSGSDEAIQLINIIKIIL 775
K+LTN+R+SG+DEA+ L+ I++ L
Sbjct: 541 KKLTNMRASGTDEAVVLVPPIRMTL 565
>sp|P0A3B1|TYPA_ECOL6 GTP-binding protein TypA/BipA OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=typA PE=3 SV=1
Length = 607
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/565 (55%), Positives = 423/565 (74%), Gaps = 5/565 (0%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
+NIAIIAHVDHGKTTL+D LL+QSGTF R+MDSN++EKERGITI +KN +I++
Sbjct: 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW 65
Query: 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 330
N RINI+DTPGHADFGGEVER++SMVD+VLL++DA +GPMPQTRFVT+KA G KPIV
Sbjct: 66 NDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIV 125
Query: 331 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP 390
V+NK+DR ARP+WVVD FDLF L AT+EQLDFP++Y SAL+G A + + +M P
Sbjct: 126 VINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTP 185
Query: 391 LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDD 450
L++AI+ +VP + + P Q+QI L+Y+SY+G IGIGRI G++K Q V I++ +
Sbjct: 186 LYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDS-EG 244
Query: 451 KPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDE 510
K AK+ ++ GL+R+ + A +GDIV ITG+ E+ I T+CD LP L++DE
Sbjct: 245 KTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDE 304
Query: 511 PTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGE 570
PT+++ F VN SP G+EGKF+T+RQI +RL+ E+ +N+ LRV + + D+ + VSGRGE
Sbjct: 305 PTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADA-FRVSGRGE 363
Query: 571 LHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRG 630
LHL++LIENMRREG+EL+VSRP+VIF+ ++G EPYEN+ +D+EE +QG +MQ L R
Sbjct: 364 LHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERK 423
Query: 631 GDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDL 690
GDLKN+ + K RVRL+Y IPSRGLIGF++EF+T+T GTGL+ F Y + ++
Sbjct: 424 GDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYD---DVRPGEV 480
Query: 691 GKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKE 750
G+R+NGVLIS GKAVA++L+ LQDRG+LF+ H VYEG IIGIHSR NDL VN +
Sbjct: 481 GQRQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTG 540
Query: 751 KQLTNIRSSGSDEAIQLINIIKIIL 775
K+LTN+R+SG+DEA+ L+ I++ L
Sbjct: 541 KKLTNMRASGTDEAVVLVPPIRMTL 565
>sp|P0A3B3|TYPA_ECO57 GTP-binding protein TypA/BipA OS=Escherichia coli O157:H7 GN=typA
PE=3 SV=1
Length = 607
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/565 (55%), Positives = 423/565 (74%), Gaps = 5/565 (0%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
+NIAIIAHVDHGKTTL+D LL+QSGTF R+MDSN++EKERGITI +KN +I++
Sbjct: 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW 65
Query: 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 330
N RINI+DTPGHADFGGEVER++SMVD+VLL++DA +GPMPQTRFVT+KA G KPIV
Sbjct: 66 NDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIV 125
Query: 331 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP 390
V+NK+DR ARP+WVVD FDLF L AT+EQLDFP++Y SAL+G A + + +M P
Sbjct: 126 VINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTP 185
Query: 391 LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDD 450
L++AI+ +VP + + P Q+QI L+Y+SY+G IGIGRI G++K Q V I++ +
Sbjct: 186 LYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDS-EG 244
Query: 451 KPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDE 510
K AK+ ++ GL+R+ + A +GDIV ITG+ E+ I T+CD LP L++DE
Sbjct: 245 KTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDE 304
Query: 511 PTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGE 570
PT+++ F VN SP G+EGKF+T+RQI +RL+ E+ +N+ LRV + + D+ + VSGRGE
Sbjct: 305 PTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADA-FRVSGRGE 363
Query: 571 LHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRG 630
LHL++LIENMRREG+EL+VSRP+VIF+ ++G EPYEN+ +D+EE +QG +MQ L R
Sbjct: 364 LHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERK 423
Query: 631 GDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDL 690
GDLKN+ + K RVRL+Y IPSRGLIGF++EF+T+T GTGL+ F Y + ++
Sbjct: 424 GDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYD---DVRPGEV 480
Query: 691 GKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKE 750
G+R+NGVLIS GKAVA++L+ LQDRG+LF+ H VYEG IIGIHSR NDL VN +
Sbjct: 481 GQRQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTG 540
Query: 751 KQLTNIRSSGSDEAIQLINIIKIIL 775
K+LTN+R+SG+DEA+ L+ I++ L
Sbjct: 541 KKLTNMRASGTDEAVVLVPPIRMTL 565
>sp|P0A3B2|TYPA_ECO27 GTP-binding protein TypA/BipA OS=Escherichia coli O127:H6 (strain
E2348/69 / EPEC) GN=typA PE=3 SV=1
Length = 607
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/565 (55%), Positives = 423/565 (74%), Gaps = 5/565 (0%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
+NIAIIAHVDHGKTTL+D LL+QSGTF R+MDSN++EKERGITI +KN +I++
Sbjct: 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW 65
Query: 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 330
N RINI+DTPGHADFGGEVER++SMVD+VLL++DA +GPMPQTRFVT+KA G KPIV
Sbjct: 66 NDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIV 125
Query: 331 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP 390
V+NK+DR ARP+WVVD FDLF L AT+EQLDFP++Y SAL+G A + + +M P
Sbjct: 126 VINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTP 185
Query: 391 LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDD 450
L++AI+ +VP + + P Q+QI L+Y+SY+G IGIGRI G++K Q V I++ +
Sbjct: 186 LYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDS-EG 244
Query: 451 KPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDE 510
K AK+ ++ GL+R+ + A +GDIV ITG+ E+ I T+CD LP L++DE
Sbjct: 245 KTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDE 304
Query: 511 PTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGE 570
PT+++ F VN SP G+EGKF+T+RQI +RL+ E+ +N+ LRV + + D+ + VSGRGE
Sbjct: 305 PTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADA-FRVSGRGE 363
Query: 571 LHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRG 630
LHL++LIENMRREG+EL+VSRP+VIF+ ++G EPYEN+ +D+EE +QG +MQ L R
Sbjct: 364 LHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERK 423
Query: 631 GDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDL 690
GDLKN+ + K RVRL+Y IPSRGLIGF++EF+T+T GTGL+ F Y + ++
Sbjct: 424 GDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYD---DVRPGEV 480
Query: 691 GKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKE 750
G+R+NGVLIS GKAVA++L+ LQDRG+LF+ H VYEG IIGIHSR NDL VN +
Sbjct: 481 GQRQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTG 540
Query: 751 KQLTNIRSSGSDEAIQLINIIKIIL 775
K+LTN+R+SG+DEA+ L+ I++ L
Sbjct: 541 KKLTNMRASGTDEAVVLVPPIRMTL 565
>sp|P57508|TYPA_BUCAI GTP-binding protein TypA/BipA homolog OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=typA PE=3 SV=1
Length = 607
Score = 632 bits (1630), Expect = e-180, Method: Compositional matrix adjust.
Identities = 314/565 (55%), Positives = 418/565 (73%), Gaps = 5/565 (0%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
+NIAIIAHVDHGKTTL+D LL+QSGTF +++ RIMDSN++EKERGITI SKN SI++
Sbjct: 6 RNIAIIAHVDHGKTTLLDKLLQQSGTFEEHEEKTERIMDSNDLEKERGITILSKNTSIKW 65
Query: 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 330
N +INI+DTPGHADFGGEVER++SMVD+VLL++DA++GPMPQTRFVT+KA K G PIV
Sbjct: 66 NNYKINIVDTPGHADFGGEVERVMSMVDSVLLVVDALDGPMPQTRFVTKKAFKYGLNPIV 125
Query: 331 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP 390
V+NKIDR ++RP+WVVD FDLF L A++EQLDFP+IYTSA+ G + + Q NMIP
Sbjct: 126 VINKIDRIHSRPDWVVDQVFDLFVNLNASDEQLDFPIIYTSAVLGTSGTDYLNMQNNMIP 185
Query: 391 LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDD 450
L+E+I+KY P NS+ Q+QI L+Y+SYLG IG+GR+ G IK+ V I++
Sbjct: 186 LYESIIKYAPAPNVNSDQKFQMQISQLDYNSYLGVIGVGRVKQGSIKTNDKVTIID-RFG 244
Query: 451 KPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDE 510
K K+N++ + GL R+ +N+ +GDI+ ITG+ ++ I TIC P LP L+IDE
Sbjct: 245 KHRSGKVNKVLNYFGLKRMEINQGYAGDIIAITGLNKLKISDTICHPDNLQPLPALSIDE 304
Query: 511 PTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGE 570
PT+ + F VN SP +G+EGK+IT+RQI RL E +N+ L++ + K D +I+ VSGRGE
Sbjct: 305 PTVNMFFSVNTSPFSGKEGKYITSRQILERLKKETMHNVALQIKETK-DPNIFSVSGRGE 363
Query: 571 LHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRG 630
LHL+ILIENMRREG+EL VSRP++IF+ +NG EP+EN+ +DIEE NQG +MQ + R
Sbjct: 364 LHLSILIENMRREGFELEVSRPKIIFREINGIQKEPFENVTLDIEEKNQGSVMQFIGIRK 423
Query: 631 GDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDL 690
G+LKN+ + K RVRLEY + SR LIGF++EF+++T GTGL F Y N ++
Sbjct: 424 GELKNMIPDSKGRVRLEYILSSRALIGFRSEFMSITSGTGLCYSSFSHYDNLQNS---NI 480
Query: 691 GKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKE 750
G+R+NGVLIS +G AV +SL+ LQ+RG+LFI H VYEG IIG+H+R NDL VN +
Sbjct: 481 GQRKNGVLISNSTGMAVGFSLFNLQERGKLFIGHGAQVYEGQIIGLHNRSNDLTVNCLTG 540
Query: 751 KQLTNIRSSGSDEAIQLINIIKIIL 775
K+LTN+R+SG+DEAI L I L
Sbjct: 541 KKLTNMRASGTDEAIVLTTAIHFTL 565
>sp|Q8K9C8|TYPA_BUCAP GTP-binding protein TypA/BipA homolog OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=typA PE=3 SV=1
Length = 609
Score = 620 bits (1600), Expect = e-177, Method: Compositional matrix adjust.
Identities = 311/565 (55%), Positives = 416/565 (73%), Gaps = 5/565 (0%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
+NIAIIAHVDHGKTTL+D LL+QSGTF+K++ RIMDSN++EKERGITI SKN SI++
Sbjct: 6 RNIAIIAHVDHGKTTLLDQLLQQSGTFQKHEEKKERIMDSNDLEKERGITILSKNTSIKW 65
Query: 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 330
+INI+DTPGHADFGGEVER++SMVD+VLL++DA++GPMPQTRFVT+KA K G PIV
Sbjct: 66 KEYKINIVDTPGHADFGGEVERVMSMVDSVLLIVDALDGPMPQTRFVTKKAFKYGLNPIV 125
Query: 331 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP 390
V+NKIDR N+RP+WV++ FDLF L A ++QLDFP+IYTSA+ G + N + NMIP
Sbjct: 126 VINKIDRKNSRPDWVINEIFDLFVNLNANDKQLDFPIIYTSAILGTSGINYLDMKENMIP 185
Query: 391 LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDD 450
L+EAI+KY P + N Q+QI L+Y++YLG IG+GRI G IK VVI++ +
Sbjct: 186 LYEAIIKYAPAPNVDPNQKFQMQISQLDYNNYLGVIGVGRIKQGHIKPNDSVVIIDSLGN 245
Query: 451 KPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDE 510
N KIN++ + GL R+ + + +GDI+ ITG+ ++ I TIC P LP L IDE
Sbjct: 246 TRN-GKINKVLNYFGLKRLEIQKGDAGDIIAITGLNKLNISDTICHPDNLCPLPPLIIDE 304
Query: 511 PTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGE 570
PT+ + F VN SP +G+EGK+IT+RQI RL E +N+ L+V + K D +I+ VSGRGE
Sbjct: 305 PTVNMFFSVNTSPFSGKEGKYITSRQILERLKKETIHNVALQVKETK-DANIFSVSGRGE 363
Query: 571 LHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRG 630
LHL+ILIENMRREG+EL VSRP++IF+ +N EP+EN+ +DIEE +QG IM+ + R
Sbjct: 364 LHLSILIENMRREGFELEVSRPKIIFREINDIKQEPFENIILDIEEKHQGNIMKFIGERK 423
Query: 631 GDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDL 690
G+LKNI ++ +R+RLEY + SR LIGF+ EF+++T GTGL F Y + K D+
Sbjct: 424 GELKNITVDPNKRIRLEYLLSSRALIGFRTEFMSITSGTGLFYSSFSHYQKY---QKNDI 480
Query: 691 GKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKE 750
G+R+NGVLIS +G AVA++L+ LQ+RG+LF+ H VYEG IIG+H+R NDL VN +
Sbjct: 481 GQRKNGVLISNSTGMAVAFALFNLQERGKLFLGHGTQVYEGQIIGLHNRSNDLTVNCLTG 540
Query: 751 KQLTNIRSSGSDEAIQLINIIKIIL 775
K+LTN+R+SG+DEAI L K L
Sbjct: 541 KKLTNMRASGTDEAIILTTFTKFTL 565
>sp|P44910|TYPA_HAEIN GTP-binding protein TypA/BipA homolog OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=typA PE=1
SV=1
Length = 616
Score = 619 bits (1597), Expect = e-176, Method: Compositional matrix adjust.
Identities = 312/566 (55%), Positives = 417/566 (73%), Gaps = 6/566 (1%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQ-NINARIMDSNEIEKERGITIFSKNCSIE 269
+NIAIIAHVDHGKTTL+D LL+QSGTF + +++ R+MDSN++EKERGITI +KN +I
Sbjct: 11 RNIAIIAHVDHGKTTLVDKLLQQSGTFESARGDVDERVMDSNDLEKERGITILAKNTAIN 70
Query: 270 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 329
+N RINI+DTPGHADFGGEVER+LSMVD+VLL++DA +GPMPQTRFVT+KA G KPI
Sbjct: 71 WNDYRINIVDTPGHADFGGEVERVLSMVDSVLLVVDAFDGPMPQTRFVTQKAFAHGLKPI 130
Query: 330 VVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMI 389
VV+NK+DR ARP+WVVD FDLF L A++EQLDFP+IY SAL+G A + +M
Sbjct: 131 VVINKVDRPGARPDWVVDQVFDLFVNLGASDEQLDFPIIYASALNGVAGLEHEDLAEDMT 190
Query: 390 PLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPD 449
PLFEAI+K+V K + P Q+QI L+Y++Y+G IGIGRI G IK Q V I+N +
Sbjct: 191 PLFEAIVKHVEPPKVELDAPFQMQISQLDYNNYVGVIGIGRIKRGSIKPNQPVTIINS-E 249
Query: 450 DKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNID 509
K + +I Q+ GL R + A +GDIV ITG+ E+ I TICD + LP L +D
Sbjct: 250 GKTRQGRIGQVLGHLGLQRYEEDVAYAGDIVAITGLGELNISDTICDINTVEALPSLTVD 309
Query: 510 EPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRG 569
EPT+T+ F VN SP AG+EGK++T+RQI RL+ E+ +N+ LRV + + D + VSGRG
Sbjct: 310 EPTVTMFFCVNTSPFAGQEGKYVTSRQILERLNKELVHNVALRVEETPNPDE-FRVSGRG 368
Query: 570 ELHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYR 629
ELHL++LIENMRREGYEL+VSRP+VI++ ++G+ EPYE + +D+EE +QG +M+ L R
Sbjct: 369 ELHLSVLIENMRREGYELAVSRPKVIYRDIDGKKQEPYEQVTIDVEEQHQGSVMEALGIR 428
Query: 630 GGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYD 689
G+++++ + K RVRLEY IPSRGLIGF+ +F+T+T GTGL+ F Y +
Sbjct: 429 KGEVRDMLPDGKGRVRLEYIIPSRGLIGFRGDFMTMTSGTGLLYSSFSHYDEIKGG---E 485
Query: 690 LGKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIK 749
+G+R+NGVLIS +GKA+ Y+L+ LQ+RG+L I+ N VYEG IIGIHSR NDL VN ++
Sbjct: 486 IGQRKNGVLISNATGKALGYALFGLQERGKLMIDANIEVYEGQIIGIHSRSNDLTVNCLQ 545
Query: 750 EKQLTNIRSSGSDEAIQLINIIKIIL 775
K+LTN+R+SG D+AI L +K L
Sbjct: 546 GKKLTNMRASGKDDAIVLTTPVKFSL 571
>sp|Q89AC9|TYPA_BUCBP GTP-binding protein TypA/BipA homolog OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=typA PE=3 SV=2
Length = 611
Score = 617 bits (1592), Expect = e-176, Method: Compositional matrix adjust.
Identities = 320/576 (55%), Positives = 412/576 (71%), Gaps = 8/576 (1%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
+NIAIIAHVDHGKTTL+D LL+QSGTF+K++ + RIMDSN++EKERGITI +KN +I++
Sbjct: 10 RNIAIIAHVDHGKTTLVDKLLQQSGTFKKHEEFSERIMDSNDLEKERGITILAKNTAIQW 69
Query: 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 330
RINIIDTPGHADFGGEVERILSMVD+VLL++DA+EGPMPQTRFVT+KA G KPIV
Sbjct: 70 KKYRINIIDTPGHADFGGEVERILSMVDSVLLVVDALEGPMPQTRFVTQKAFSYGIKPIV 129
Query: 331 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP 390
V+NKIDR +ARP WV+D FDLF L AT+EQLDFP IYTSAL G + + +MIP
Sbjct: 130 VINKIDRKHARPNWVIDQIFDLFVNLNATDEQLDFPTIYTSALLGTSGVSYNHMNPDMIP 189
Query: 391 LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDD 450
L+ AI+KY P N P Q+QI L+Y +YLG IGIGRI G + S Q + I+N +
Sbjct: 190 LYNAIVKYTPPPTVYPNCPFQMQISQLDYDNYLGIIGIGRINKGSVTSNQSISIINNTEV 249
Query: 451 KPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDE 510
K KI +I + GL+++ +NEA SGDI+ ITGI+++ I TICDP + LPML IDE
Sbjct: 250 K-RTGKIGKILQYLGLNKIEINEAQSGDIIAITGIDKLNISDTICDPQYISALPMLKIDE 308
Query: 511 PTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGE 570
PT+ + F VN SP +G EGK+IT+RQI NRL E N+ L++ + +D + + VSGRGE
Sbjct: 309 PTVEMLFSVNKSPFSGTEGKYITSRQIFNRLKKEENYNVALKIKET-NDTNTFSVSGRGE 367
Query: 571 LHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRG 630
LHL+ILIENMRREG+EL VSRP+VI KT+N + EP E + +DIE QG IM+ + R
Sbjct: 368 LHLSILIENMRREGFELEVSRPQVILKTINELIQEPMETVVLDIENKYQGTIMKTIGQRK 427
Query: 631 GDLKNIEINE-KERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYD 689
G + NI ++ ER RL+ I SR LIGF+ EF TLT G+GL F Y +
Sbjct: 428 GTISNITPDQNNERTRLDCIISSRSLIGFRTEFSTLTSGSGLFYSTFSHYQKIESNK--- 484
Query: 690 LGKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIK 749
+ + RNGVLI+ +G+A+ +SL+ LQ+RG+LFI H VYEG I+GIH+R NDL VN +
Sbjct: 485 IKRHRNGVLIANKTGQAIGFSLFNLQNRGKLFITHGTKVYEGQIVGIHNRVNDLTVNCLS 544
Query: 750 EKQLTNIRSSGSDEAIQLINIIKIILIY--KYMNGD 783
K+LTN+R+SGSDEAI L IK+ L Y ++N D
Sbjct: 545 GKKLTNMRASGSDEAITLTTPIKMTLEYAISFINDD 580
>sp|O07631|TYPA_BACSU GTP-binding protein TypA/BipA homolog OS=Bacillus subtilis (strain
168) GN=typA PE=3 SV=1
Length = 612
Score = 588 bits (1517), Expect = e-167, Method: Compositional matrix adjust.
Identities = 293/584 (50%), Positives = 407/584 (69%), Gaps = 9/584 (1%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
+NIAIIAHVDHGKTTL+D LL Q+GTFR N+ + R MDSN++E+ERGITI +KN +I Y
Sbjct: 8 RNIAIIAHVDHGKTTLVDQLLHQAGTFRANEQVAERAMDSNDLERERGITILAKNTAINY 67
Query: 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 330
TRINI+DTPGHADFGGEVERI+ MVD V+L++DA EG MPQTRFV +KAL+ P+V
Sbjct: 68 KDTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGCMPQTRFVLKKALEQNLNPVV 127
Query: 331 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP 390
VVNKIDR ARPE V+D DLF +L A EEQL+FPV+Y SA++G A+ + K + NM
Sbjct: 128 VVNKIDRDFARPEEVIDEVLDLFIELDANEEQLEFPVVYASAINGTASLDPKQQDENMEA 187
Query: 391 LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDD 450
L+E I+K+VP DN+ PLQ Q+ L+Y+ Y+G+IGIGR+ G +K Q V +M D
Sbjct: 188 LYETIIKHVPAPVDNAEEPLQFQVALLDYNDYVGRIGIGRVFRGTMKVGQQVSLMK-LDG 246
Query: 451 KPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDE 510
++ +I F+GL RV + EA +GD+V ++G+E+I +G T+C + LP+L IDE
Sbjct: 247 TAKSFRVTKIFGFQGLKRVEIEEAKAGDLVAVSGMEDINVGETVCPVDHQDPLPVLRIDE 306
Query: 511 PTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGE 570
PTL + F+VNNSP AGREGK++T R+I+ RL +++ ++ LRV D+ + VSGRGE
Sbjct: 307 PTLQMTFVVNNSPFAGREGKYVTARKIEERLQSQLQTDVSLRVEPTASPDA-WVVSGRGE 365
Query: 571 LHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRG 630
LHL+ILIENMRREGYEL VS+P VI K ++G EP E + +D+ E + G +M+ + R
Sbjct: 366 LHLSILIENMRREGYELQVSKPEVIIKEIDGVRCEPVERVQIDVPEEHTGSVMESMGARK 425
Query: 631 GDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDL 690
G++ ++ N +VRL + +PSRGLIG+ EF++LTRG G+++H F+ Y P +
Sbjct: 426 GEMVDMINNGNGQVRLIFTVPSRGLIGYSTEFLSLTRGFGILNHTFDSYQPM---QAGQV 482
Query: 691 GKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKE 750
G RR GVL+S +GKA +Y + ++DRG +F+ VYEGMI+G H+RDNDL+VN K
Sbjct: 483 GGRRQGVLVSMENGKATSYGIQGIEDRGVIFVEPGTEVYEGMIVGEHNRDNDLVVNVSKM 542
Query: 751 KQLTNIRSSGSDE--AIQLINIIKIILIYKYMNGDVAEWLKALP 792
KQ TN+RS+ D+ I+ I+ + +Y+N D E+ + P
Sbjct: 543 KQQTNVRSATKDQTTTIKKARIMSLEESLEYLNED--EYCEVTP 584
>sp|Q9ZLZ3|TYPA_HELPJ GTP-binding protein TypA/BipA homolog OS=Helicobacter pylori
(strain J99) GN=typA PE=3 SV=1
Length = 599
Score = 573 bits (1477), Expect = e-162, Method: Compositional matrix adjust.
Identities = 282/557 (50%), Positives = 394/557 (70%), Gaps = 7/557 (1%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
+NIA+IAHVDHGKTTL+D LL QSGTF + + ++ R+MDSN++EKERGITI SKN +I Y
Sbjct: 5 RNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDERVMDSNDLEKERGITILSKNTAIYY 64
Query: 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 330
T+INIIDTPGHADFGGEVER+L MVD VLLL+DA EG MPQT+FV +KAL G PIV
Sbjct: 65 KDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGICPIV 124
Query: 331 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP 390
VVNKID+ A P+ VVD FDLF + A+++QLDFPV+Y +A GYA ++ + N+ P
Sbjct: 125 VVNKIDKPAAEPDRVVDEVFDLFVAMGASDKQLDFPVVYAAARDGYAMKSLDDEKKNLEP 184
Query: 391 LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDD 450
LFE IL++VP + + PLQ+QI +L+Y +Y+GKIGI R+ +G +K + V++M
Sbjct: 185 LFETILEHVPSPSGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGS 244
Query: 451 KPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDE 510
K N +I ++ F GL R + A +GDIV + G + +G ++ DP+ P L ++++E
Sbjct: 245 KEN-GRITKLIGFLGLARTEIENAYAGDIVALAGFNAMDVGDSVVDPTNPMPLDPMHLEE 303
Query: 511 PTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGE 570
PT+++ F VN+SPLAG EGK +T ++K+RL E++ NI ++ + + ++VSGRGE
Sbjct: 304 PTMSVYFAVNDSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEE--MGEGKFKVSGRGE 361
Query: 571 LHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRG 630
L +TIL EN+RREG+E S+SRP VI K NG EP+E+L +D + G I+++L R
Sbjct: 362 LQITILAENLRREGFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAIIERLGKRK 421
Query: 631 GDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDL 690
++K + RLE+ IP+RGLIG+++EF+T T+G G+++H F E+ PF +
Sbjct: 422 AEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLTDTKGEGVMNHSFLEFRPFSGS----V 477
Query: 691 GKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKE 750
R+NG LIS +G+A A+SL+ +Q+RG LFIN VY GM+IG HSRDNDL VNPIK
Sbjct: 478 ESRKNGALISMENGEATAFSLFNIQERGALFINPQTKVYVGMVIGEHSRDNDLDVNPIKS 537
Query: 751 KQLTNIRSSGSDEAIQL 767
K LTN+R+SGSD+AI+L
Sbjct: 538 KHLTNMRASGSDDAIKL 554
>sp|O25225|TYPA_HELPY GTP-binding protein TypA/BipA homolog OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=typA PE=3 SV=1
Length = 599
Score = 573 bits (1476), Expect = e-162, Method: Compositional matrix adjust.
Identities = 282/557 (50%), Positives = 394/557 (70%), Gaps = 7/557 (1%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
+NIA+IAHVDHGKTTL+D LL QSGTF + + ++ R+MDSN++E+ERGITI SKN +I Y
Sbjct: 5 RNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDERVMDSNDLERERGITILSKNTAIYY 64
Query: 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 330
T+INIIDTPGHADFGGEVER+L MVD VLLL+DA EG MPQT+FV +KAL G PIV
Sbjct: 65 KDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGICPIV 124
Query: 331 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP 390
VVNKID+ A P+ VVD FDLF + A+++QLDFPV+Y +A GYA ++ + N+ P
Sbjct: 125 VVNKIDKPAAEPDRVVDEVFDLFVAMGASDKQLDFPVVYAAARDGYAMKSLDDEKKNLEP 184
Query: 391 LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDD 450
LFE IL++VP + + PLQ+QI +L+Y +Y+GKIGI R+ +G +K + V++M
Sbjct: 185 LFETILEHVPSPSGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGS 244
Query: 451 KPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDE 510
K N +I ++ F GL R + A +GDIV I G + +G ++ DP+ P L ++++E
Sbjct: 245 KEN-GRITKLIGFLGLARTEIENAYAGDIVAIAGFNAMDVGDSVVDPANPMPLDPMHLEE 303
Query: 511 PTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGE 570
PT+++ F VN+SPLAG EGK +T ++K+RL E++ NI ++ + + ++VSGRGE
Sbjct: 304 PTMSVYFAVNDSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEE--MGEGKFKVSGRGE 361
Query: 571 LHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRG 630
L +TIL EN+RREG+E S+SRP VI K NG EP+E+L +D + G I+++L R
Sbjct: 362 LQITILAENLRREGFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAIIERLGKRK 421
Query: 631 GDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDL 690
++K + RLE+ IP+RGLIG+++EF+T T+G G+++H F E+ PF +
Sbjct: 422 AEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLTDTKGEGVMNHSFLEFRPFSGS----V 477
Query: 691 GKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKE 750
R+NG LIS +G+A A+SL+ +Q+RG LFIN VY GM+IG HSRDNDL VNPIK
Sbjct: 478 ESRKNGALISMENGEATAFSLFNIQERGTLFINPQTKVYVGMVIGEHSRDNDLDVNPIKS 537
Query: 751 KQLTNIRSSGSDEAIQL 767
K LTN+R+SGSD+AI+L
Sbjct: 538 KHLTNMRASGSDDAIKL 554
>sp|P72749|TYPA_SYNY3 GTP-binding protein TypA/BipA homolog OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=typA PE=3 SV=1
Length = 597
Score = 559 bits (1441), Expect = e-158, Method: Compositional matrix adjust.
Identities = 275/557 (49%), Positives = 387/557 (69%), Gaps = 6/557 (1%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
+N+AIIAHVDHGKTTL+D LL+QSG FR+ +++ +MDSN++E+ERGITI SKN ++ Y
Sbjct: 6 RNVAIIAHVDHGKTTLVDALLKQSGIFREGEDVPVCVMDSNDLERERGITILSKNTAVRY 65
Query: 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 330
T INI+DTPGHADFGGEVER+L MVD +L++DA EGPMPQTRFV +KAL+ G +P+V
Sbjct: 66 QDTLINIVDTPGHADFGGEVERVLGMVDGCVLIVDANEGPMPQTRFVLKKALEKGLRPLV 125
Query: 331 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP 390
VVNKIDR A P VD FDLF +L A ++Q DF ++ S L G+A E+ +M P
Sbjct: 126 VVNKIDRPRADPNTAVDKVFDLFVELGADDDQCDFTTLFASGLGGFAKESLDDDSEDMKP 185
Query: 391 LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDD 450
LFEAIL +VP + N PLQLQ+ +L+YS YLG+I IGRI +G +K+ Q ++ D
Sbjct: 186 LFEAILHHVPPPAGDPNKPLQLQVTTLDYSDYLGRIIIGRIHNGTVKAGQQAALVK-EDG 244
Query: 451 KPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDE 510
K K++++ F+GL+R+ + EA +G IV I G + IG T+ P +P LP++ +DE
Sbjct: 245 SIAKGKVSKLLGFEGLNRIELPEASAGYIVAIAGFADANIGETLTCPDEPQALPLIKVDE 304
Query: 511 PTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGE 570
PTL + F VN+SP AG+EGKF+T+RQI++RL+ E++ N+ LRV + + + VSGRGE
Sbjct: 305 PTLQMTFSVNDSPFAGQEGKFVTSRQIRDRLNRELETNVALRVEDGESAEQ-FLVSGRGE 363
Query: 571 LHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRG 630
LHL ILIE MRREGYE V++P+VI++ +NG+ EP E L +D+ E G +++L R
Sbjct: 364 LHLGILIETMRREGYEFQVAQPQVIYREVNGQPCEPVEYLVLDVPEAAVGACIERLGQRR 423
Query: 631 GDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDL 690
G++++++ + R +LE+ IP+RGL+GF+ +FI +TRG G+++H F EY P DL
Sbjct: 424 GEMQDMQTSVNGRTQLEFVIPARGLLGFRGDFIRITRGEGIMNHSFLEYRPMSG----DL 479
Query: 691 GKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKE 750
R NGV+++ G A Y++ +DRG FI VY+GMIIG H+R D+ +N K
Sbjct: 480 ETRYNGVMVAFEEGVATFYAMKNAEDRGVFFITPGTKVYKGMIIGEHNRPQDIELNVCKT 539
Query: 751 KQLTNIRSSGSDEAIQL 767
KQLTN RS+ DE +QL
Sbjct: 540 KQLTNHRSATGDELVQL 556
>sp|Q63TQ0|TRUB_BURPS tRNA pseudouridine synthase B OS=Burkholderia pseudomallei (strain
K96243) GN=truB PE=3 SV=1
Length = 311
Score = 234 bits (597), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 108/201 (53%), Positives = 141/201 (70%), Gaps = 1/201 (0%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP GLSSN+AL + K L AKK G+TGTLDP A+GLLPLCFGEATKFS L EADK YEA
Sbjct: 23 KPVGLSSNDALMRAKRLYQAKKAGHTGTLDPLASGLLPLCFGEATKFSQDLLEADKTYEA 82
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
+ LG+ T TGD EG ++D +++ + L F G+I Q+PPMYSALK G PLY
Sbjct: 83 TMRLGVRTTTGDAEGDVLD-TRDVSCDEAAVRAALARFVGEIVQVPPMYSALKRDGKPLY 141
Query: 137 KYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
+YAR+G T++R+ R + I + ++ +P +T R+ CSKGTY+R L+EDIG+ LGCGAHL
Sbjct: 142 EYARAGQTVEREGRTVTIRALALVSCALPDVTFRVTCSKGTYVRTLAEDIGEALGCGAHL 201
Query: 197 KYLRRIGIDKLTLDKNIAIIA 217
LRR G+ LTL+ + + A
Sbjct: 202 TMLRRTGVGPLTLEHAVTLDA 222
>sp|Q62KL1|TRUB_BURMA tRNA pseudouridine synthase B OS=Burkholderia mallei (strain ATCC
23344) GN=truB PE=3 SV=1
Length = 311
Score = 234 bits (597), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 108/201 (53%), Positives = 141/201 (70%), Gaps = 1/201 (0%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP GLSSN+AL + K L AKK G+TGTLDP A+GLLPLCFGEATKFS L EADK YEA
Sbjct: 23 KPVGLSSNDALMRAKRLYQAKKAGHTGTLDPLASGLLPLCFGEATKFSQDLLEADKTYEA 82
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
+ LG+ T TGD EG ++D +++ + L F G+I Q+PPMYSALK G PLY
Sbjct: 83 TMRLGVRTTTGDAEGDVLD-TRDVSCDEAAVRAALARFVGEIVQVPPMYSALKRDGKPLY 141
Query: 137 KYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
+YAR+G T++R+ R + I + ++ +P +T R+ CSKGTY+R L+EDIG+ LGCGAHL
Sbjct: 142 EYARAGQTVEREGRTVTIRALALVSCALPDVTFRVTCSKGTYVRTLAEDIGEALGCGAHL 201
Query: 197 KYLRRIGIDKLTLDKNIAIIA 217
LRR G+ LTL+ + + A
Sbjct: 202 TMLRRTGVGPLTLEHAVTLDA 222
>sp|Q3JSY7|TRUB_BURP1 tRNA pseudouridine synthase B OS=Burkholderia pseudomallei (strain
1710b) GN=truB PE=3 SV=1
Length = 302
Score = 234 bits (597), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 108/201 (53%), Positives = 141/201 (70%), Gaps = 1/201 (0%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP GLSSN+AL + K L AKK G+TGTLDP A+GLLPLCFGEATKFS L EADK YEA
Sbjct: 14 KPVGLSSNDALMRAKRLYQAKKAGHTGTLDPLASGLLPLCFGEATKFSQDLLEADKTYEA 73
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
+ LG+ T TGD EG ++D +++ + L F G+I Q+PPMYSALK G PLY
Sbjct: 74 TMRLGVRTTTGDAEGDVLD-TRDVSCDEAAVRAALARFVGEIVQVPPMYSALKRDGKPLY 132
Query: 137 KYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
+YAR+G T++R+ R + I + ++ +P +T R+ CSKGTY+R L+EDIG+ LGCGAHL
Sbjct: 133 EYARAGQTVEREGRTVTIRALALVSCALPDVTFRVTCSKGTYVRTLAEDIGEALGCGAHL 192
Query: 197 KYLRRIGIDKLTLDKNIAIIA 217
LRR G+ LTL+ + + A
Sbjct: 193 TMLRRTGVGPLTLEHAVTLDA 213
>sp|A3NUL2|TRUB_BURP0 tRNA pseudouridine synthase B OS=Burkholderia pseudomallei (strain
1106a) GN=truB PE=3 SV=1
Length = 302
Score = 234 bits (597), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 108/201 (53%), Positives = 141/201 (70%), Gaps = 1/201 (0%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP GLSSN+AL + K L AKK G+TGTLDP A+GLLPLCFGEATKFS L EADK YEA
Sbjct: 14 KPVGLSSNDALMRAKRLYQAKKAGHTGTLDPLASGLLPLCFGEATKFSQDLLEADKTYEA 73
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
+ LG+ T TGD EG ++D +++ + L F G+I Q+PPMYSALK G PLY
Sbjct: 74 TMRLGVRTTTGDAEGDVLD-TRDVSCDEAAVRAALARFVGEIVQVPPMYSALKRDGKPLY 132
Query: 137 KYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
+YAR+G T++R+ R + I + ++ +P +T R+ CSKGTY+R L+EDIG+ LGCGAHL
Sbjct: 133 EYARAGQTVEREGRTVTIRALALVSCALPDVTFRVTCSKGTYVRTLAEDIGEALGCGAHL 192
Query: 197 KYLRRIGIDKLTLDKNIAIIA 217
LRR G+ LTL+ + + A
Sbjct: 193 TMLRRTGVGPLTLEHAVTLDA 213
>sp|A3MJW6|TRUB_BURM7 tRNA pseudouridine synthase B OS=Burkholderia mallei (strain NCTC
10247) GN=truB PE=3 SV=1
Length = 302
Score = 234 bits (597), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 108/201 (53%), Positives = 141/201 (70%), Gaps = 1/201 (0%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP GLSSN+AL + K L AKK G+TGTLDP A+GLLPLCFGEATKFS L EADK YEA
Sbjct: 14 KPVGLSSNDALMRAKRLYQAKKAGHTGTLDPLASGLLPLCFGEATKFSQDLLEADKTYEA 73
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
+ LG+ T TGD EG ++D +++ + L F G+I Q+PPMYSALK G PLY
Sbjct: 74 TMRLGVRTTTGDAEGDVLD-TRDVSCDEAAVRAALARFVGEIVQVPPMYSALKRDGKPLY 132
Query: 137 KYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
+YAR+G T++R+ R + I + ++ +P +T R+ CSKGTY+R L+EDIG+ LGCGAHL
Sbjct: 133 EYARAGQTVEREGRTVTIRALALVSCALPDVTFRVTCSKGTYVRTLAEDIGEALGCGAHL 192
Query: 197 KYLRRIGIDKLTLDKNIAIIA 217
LRR G+ LTL+ + + A
Sbjct: 193 TMLRRTGVGPLTLEHAVTLDA 213
>sp|Q1LLR8|TRUB_RALME tRNA pseudouridine synthase B OS=Ralstonia metallidurans (strain
CH34 / ATCC 43123 / DSM 2839) GN=truB PE=3 SV=1
Length = 314
Score = 234 bits (596), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 121/260 (46%), Positives = 163/260 (62%), Gaps = 19/260 (7%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP GLSSN+AL + K LL A K G+TGTLDP ATGLLPLCFGEATKFS L +ADK YEA
Sbjct: 25 KPLGLSSNDALVRAKRLLRANKAGHTGTLDPLATGLLPLCFGEATKFSQDLLDADKTYEA 84
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
+ LG TT TGD EG+I+ + + + ++ + F G+I Q+PPMYSALK G PLY
Sbjct: 85 KVRLGATTTTGDAEGEIV-VERLVTCDHDALDAAVARFTGEIEQVPPMYSALKKDGKPLY 143
Query: 137 KYARSGITIKRKLRYIKIYKITIIDYTIP--YLTLRIHCSKGTYIRVLSEDIGKMLGCGA 194
+YAR+G T++R R + I+ IT++D +P T+R+ CSKGTYIR L+ED+G+ LGCGA
Sbjct: 144 EYARAGQTVERAARQVTIHAITLLDVDLPAAMFTMRVTCSKGTYIRTLAEDVGEALGCGA 203
Query: 195 HLKYLRRIGIDKLTLDKNIA---IIAHVDHGKTTL---IDHLLRQS----------GTFR 238
HL LRR + LTL+ + I A D + + +D LL++ G F
Sbjct: 204 HLIGLRRTAVGDLTLEGAVTLEQIDAQADEARPGMLAPVDALLQRCPPVHLDAAAMGRFL 263
Query: 239 KNQNINARIMDSNEIEKERG 258
+ Q I R + ++ + G
Sbjct: 264 QGQRIARRDLPEGQVPPDEG 283
>sp|Q46ZP3|TRUB_CUPPJ tRNA pseudouridine synthase B OS=Cupriavidus pinatubonensis (strain
JMP134 / LMG 1197) GN=truB PE=3 SV=1
Length = 315
Score = 233 bits (593), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 120/259 (46%), Positives = 161/259 (62%), Gaps = 20/259 (7%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP GLSSN+AL + K LL A K G+TGTLDP ATGLLPLCFGEATKFS L +ADK YEA
Sbjct: 25 KPLGLSSNDALVRAKRLLRALKAGHTGTLDPLATGLLPLCFGEATKFSQDLLDADKTYEA 84
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
++ LG T TGD EG+++ + + ++ + F G+I Q+PPM+SALK G PLY
Sbjct: 85 VVRLGQKTTTGDAEGEVV-VERPVSCDRAGLDAAIARFLGEIDQVPPMHSALKKDGRPLY 143
Query: 137 KYARSGITIKRKLRYIKIYKITIIDYTIPY---LTLRIHCSKGTYIRVLSEDIGKMLGCG 193
+YAR+G T++R R + I+ I ++D +P T+R+ CSKGTYIR L+EDIG+ LGCG
Sbjct: 144 EYARAGQTVERPARRVTIHAIDVLDCALPLAPSFTMRVKCSKGTYIRTLAEDIGEALGCG 203
Query: 194 AHLKYLRRIGIDKLTLDKNIA---IIAHVDHGKTTL---IDHLLRQS----------GTF 237
AHL LRRI + LTLD + I A D + + +D LLR+ F
Sbjct: 204 AHLTGLRRIAVGDLTLDGAVTLDQIDAQADEARPAMLAPVDALLRRCPPVTLSAEAMSRF 263
Query: 238 RKNQNINARIMDSNEIEKE 256
+ Q + R +D + +E
Sbjct: 264 LQGQRLAYRDLDPDSAPQE 282
>sp|A3N8W0|TRUB_BURP6 tRNA pseudouridine synthase B OS=Burkholderia pseudomallei (strain
668) GN=truB PE=3 SV=1
Length = 302
Score = 232 bits (591), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 107/201 (53%), Positives = 140/201 (69%), Gaps = 1/201 (0%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP GLSSN+AL + K L KK G+TGTLDP A+GLLPLCFGEATKFS L EADK YEA
Sbjct: 14 KPVGLSSNDALMRAKRLYQVKKAGHTGTLDPLASGLLPLCFGEATKFSQDLLEADKTYEA 73
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
+ LG+ T TGD EG ++D +++ + L F G+I Q+PPMYSALK G PLY
Sbjct: 74 TMRLGVRTTTGDAEGDVLD-TRDVSCDEAAVRAALARFVGEIVQVPPMYSALKRDGKPLY 132
Query: 137 KYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
+YAR+G T++R+ R + I + ++ +P +T R+ CSKGTY+R L+EDIG+ LGCGAHL
Sbjct: 133 EYARAGQTVEREGRTVTIRALALVSCALPDVTFRVTCSKGTYVRTLAEDIGEALGCGAHL 192
Query: 197 KYLRRIGIDKLTLDKNIAIIA 217
LRR G+ LTL+ + + A
Sbjct: 193 TMLRRTGVGPLTLEHAVTLDA 213
>sp|Q39H28|TRUB_BURS3 tRNA pseudouridine synthase B OS=Burkholderia sp. (strain 383)
GN=truB PE=3 SV=1
Length = 322
Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/204 (54%), Positives = 144/204 (70%), Gaps = 1/204 (0%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP GLSSN+AL + K LL AKK G+TGTLDP A+GLLPLCFGEATKFS L EADK YEA
Sbjct: 36 KPVGLSSNDALIRAKRLLLAKKAGHTGTLDPLASGLLPLCFGEATKFSQDLLEADKTYEA 95
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
+ LG T TGD EG++ID + + +E L+ F G+I Q+PPMYSALK G PLY
Sbjct: 96 TMRLGQRTATGDAEGEVID-TRPVECDRAAVEAALVRFTGEIVQVPPMYSALKRDGKPLY 154
Query: 137 KYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
+YAR+G T++R+ R + I + ++ +P +T R+ CSKGTY+R L+EDIG+ LGCGAHL
Sbjct: 155 EYARAGQTVEREGRNVTILALALLACDLPDVTFRVTCSKGTYVRTLAEDIGEALGCGAHL 214
Query: 197 KYLRRIGIDKLTLDKNIAIIAHVD 220
LRR G+ LTL+ + + A D
Sbjct: 215 TMLRRTGVGALTLEHAVTLDALSD 238
>sp|B3R1E2|TRUB_CUPTR tRNA pseudouridine synthase B OS=Cupriavidus taiwanensis (strain R1
/ LMG 19424) GN=truB PE=3 SV=1
Length = 315
Score = 230 bits (586), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 119/249 (47%), Positives = 158/249 (63%), Gaps = 20/249 (8%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP GLSSN+AL + K LL A K G+TGTLDP ATGLLPLCFGEATKFS L EADK Y+A
Sbjct: 25 KPLGLSSNDALVRAKRLLRAAKAGHTGTLDPLATGLLPLCFGEATKFSQDLLEADKTYDA 84
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
+ LG + TGD EG+++D + + +E+ L F G+I Q+PPM+SALK G PLY
Sbjct: 85 EVRLGARSSTGDAEGELLDV-RAVTCDRAAVEQALEGFIGEIEQVPPMHSALKKDGRPLY 143
Query: 137 KYARSGITIKRKLRYIKIYKITIIDYTI---PYLTLRIHCSKGTYIRVLSEDIGKMLGCG 193
+YAR+G T++R R + I I +++ + P T+R+ CSKGTYIR L+EDIG+ LGCG
Sbjct: 144 EYARAGQTVERAARRVTIRSIALLECALPGAPSFTMRVTCSKGTYIRTLAEDIGEALGCG 203
Query: 194 AHLKYLRRIGIDKLTLDKNIAII---AHVDHGKTTL---IDHLLRQ----------SGTF 237
AHL LRRI + LTLD + + A D + + +D LL++ +G F
Sbjct: 204 AHLTGLRRIAVGDLTLDGAVTLAQIEAQDDAQRPAMLAPVDALLQKCVPVQLDAAAAGRF 263
Query: 238 RKNQNINAR 246
+ Q I R
Sbjct: 264 LQGQRIAQR 272
>sp|Q8XZV4|TRUB_RALSO tRNA pseudouridine synthase B OS=Ralstonia solanacearum (strain
GMI1000) GN=truB PE=3 SV=1
Length = 314
Score = 225 bits (573), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 111/205 (54%), Positives = 140/205 (68%), Gaps = 5/205 (2%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP G SSN+AL + K LL AKK G+TGTLDP ATGLLPLCFGEATKFS L EADK YEA
Sbjct: 25 KPIGWSSNDALIRAKRLLWAKKAGHTGTLDPLATGLLPLCFGEATKFSQDLLEADKTYEA 84
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
++ LGI T T D EG+++ + + + E + + F G+I Q+PPM+SALK G PLY
Sbjct: 85 VVRLGIRTSTADAEGEVLS-ERPVAVTPEQLRAAIGRFVGEIDQVPPMHSALKKDGKPLY 143
Query: 137 KYARSGITIKRKLRYIKIYKI----TIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGC 192
+YAR+G T++R R + I I T +D P +TLR+ CSKGTYIR L ED+G+ LGC
Sbjct: 144 EYARAGQTVERAARRVTIRAIDVLATDLDAAAPTVTLRVCCSKGTYIRTLGEDLGEALGC 203
Query: 193 GAHLKYLRRIGIDKLTLDKNIAIIA 217
GAHL LRR + LTLD + + A
Sbjct: 204 GAHLVALRRTQVGSLTLDGAVTLEA 228
>sp|Q02FT0|TRUB_PSEAB tRNA pseudouridine synthase B OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=truB PE=3 SV=1
Length = 304
Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 105/219 (47%), Positives = 148/219 (67%), Gaps = 5/219 (2%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP G+SSN AL+K+++LLNA+K G+TG+LDP ATG+LPLCFGEATKFS YL +ADK YE
Sbjct: 19 KPRGMSSNQALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQYLLDADKGYET 78
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
++ +GITT TGD EG+++ +++ + +E+ L F G I Q+PPMYSALK G PLY
Sbjct: 79 VMRMGITTTTGDAEGELL-AERDVTVGRDDLEQALPRFRGDIEQVPPMYSALKKDGQPLY 137
Query: 137 KYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
K AR+G ++R+ R + I ++ ++ + P TL + CSKGTY+R L ED+G++LGCGAH+
Sbjct: 138 KLARAGEVVEREARSVTITRLDLLSFEPPCATLAVSCSKGTYVRTLVEDLGQVLGCGAHV 197
Query: 197 KYLRRIGIDKLTLDKNIAIIA----HVDHGKTTLIDHLL 231
LRR L + I + H + G L L+
Sbjct: 198 AALRRTQAGPFALAQAITLETLERVHAEGGPEALDQFLM 236
>sp|P72154|TRUB_PSEAE tRNA pseudouridine synthase B OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=truB
PE=3 SV=2
Length = 304
Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 105/219 (47%), Positives = 148/219 (67%), Gaps = 5/219 (2%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP G+SSN AL+K+++LLNA+K G+TG+LDP ATG+LPLCFGEATKFS YL +ADK YE
Sbjct: 19 KPRGMSSNQALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQYLLDADKGYET 78
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
++ +GITT TGD EG+++ +++ + +E+ L F G I Q+PPMYSALK G PLY
Sbjct: 79 VMRMGITTTTGDAEGELL-AERDVTVGRDDLEQALPRFRGDIEQVPPMYSALKKDGQPLY 137
Query: 137 KYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
K AR+G ++R+ R + I ++ ++ + P TL + CSKGTY+R L ED+G++LGCGAH+
Sbjct: 138 KLARAGEVVEREARSVTITRLDLLSFEPPCATLAVSCSKGTYVRTLVEDLGQVLGCGAHV 197
Query: 197 KYLRRIGIDKLTLDKNIAIIA----HVDHGKTTLIDHLL 231
LRR L + I + H + G L L+
Sbjct: 198 AALRRTQAGPFALAQAITLETLERVHAEGGPEALDQFLM 236
>sp|A6VCJ9|TRUB_PSEA7 tRNA pseudouridine synthase B OS=Pseudomonas aeruginosa (strain
PA7) GN=truB PE=3 SV=1
Length = 304
Score = 223 bits (568), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 105/219 (47%), Positives = 147/219 (67%), Gaps = 5/219 (2%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP G+SSN AL+K+++LLNA+K G+TG+LDP ATG+LPLCFGEATKFS YL +ADK YE
Sbjct: 19 KPRGMSSNQALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQYLLDADKGYET 78
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
++ +GITT TGD EG+++ + + + +E+ L F G I Q+PPMYSALK G PLY
Sbjct: 79 VMRMGITTTTGDAEGEML-AEREVTVGRDDLEQALPRFRGDIEQVPPMYSALKKDGQPLY 137
Query: 137 KYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
K AR+G ++R+ R + I ++ ++ + P TL + CSKGTY+R L ED+G++LGCGAH+
Sbjct: 138 KLARAGEVVEREARSVTITRLDLLSFEPPCATLAVSCSKGTYVRTLVEDLGQVLGCGAHV 197
Query: 197 KYLRRIGIDKLTLDKNIAIIA----HVDHGKTTLIDHLL 231
LRR L + I + H + G L L+
Sbjct: 198 AALRRTQAGPFVLAQAITLETLERVHAEGGPEALDQFLM 236
>sp|Q47D96|TRUB_DECAR tRNA pseudouridine synthase B OS=Dechloromonas aromatica (strain
RCB) GN=truB PE=3 SV=1
Length = 299
Score = 223 bits (568), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 108/204 (52%), Positives = 144/204 (70%), Gaps = 11/204 (5%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP G++SN+AL+K + L +A K G+TGTLDP ATGLLPLCFGEATKFS L +ADK YEA
Sbjct: 18 KPLGMTSNDALQKARRLFSAAKGGHTGTLDPLATGLLPLCFGEATKFSADLLDADKTYEA 77
Query: 77 IIHLGITTETGDIEGKI-----IDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYK 131
++ LG+TT++GD EG++ +D K E + ++L F G I QIPPM+SALK
Sbjct: 78 VLKLGVTTDSGDAEGQVTSTAMVDIQK------EQVSEVLPRFVGDIQQIPPMHSALKRN 131
Query: 132 GIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLG 191
G PLY+ AR GI ++R+ R + I+ I +D++ LTLR+ CSKGTYIRVL+ DIGK LG
Sbjct: 132 GRPLYELARQGIEVEREPRAVTIFAIDCLDFSGDLLTLRVACSKGTYIRVLAADIGKALG 191
Query: 192 CGAHLKYLRRIGIDKLTLDKNIAI 215
CGAHL LRRI + + L ++ +
Sbjct: 192 CGAHLAALRRIVVGDIRLGNSVTL 215
>sp|B2UAA5|TRUB_RALPJ tRNA pseudouridine synthase B OS=Ralstonia pickettii (strain 12J)
GN=truB PE=3 SV=1
Length = 318
Score = 220 bits (561), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 107/201 (53%), Positives = 138/201 (68%), Gaps = 5/201 (2%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP G SSN+AL + K LL AKK G+TGTLDP ATGLLPLCFGEATKFS L +ADK YE
Sbjct: 25 KPIGWSSNDALIRAKRLLWAKKAGHTGTLDPLATGLLPLCFGEATKFSQDLLDADKTYET 84
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
++ LGI T T D EG+++ + + + E ++ + F G+I Q+PPM+SALK G PLY
Sbjct: 85 VVRLGIRTSTADAEGEVLS-ERPVSVTPEQLQAAIARFVGEIDQVPPMHSALKKDGKPLY 143
Query: 137 KYARSGITIKRKLRYIKIYKITIIDYTI----PYLTLRIHCSKGTYIRVLSEDIGKMLGC 192
+YAR+G T++R R + IY I ++ + P +TLR+ CSKGTYIR L EDIG+ LGC
Sbjct: 144 EYARAGQTVERAARRVTIYAIDVLATDLQSAEPTVTLRVSCSKGTYIRTLGEDIGEALGC 203
Query: 193 GAHLKYLRRIGIDKLTLDKNI 213
G HL LRR + LTLD +
Sbjct: 204 GGHLVALRRTQVGNLTLDGAV 224
>sp|Q7MBF7|TRUB_CHRVO tRNA pseudouridine synthase B OS=Chromobacterium violaceum (strain
ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB
9131 / NCTC 9757) GN=truB PE=3 SV=1
Length = 306
Score = 220 bits (560), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 101/196 (51%), Positives = 138/196 (70%), Gaps = 1/196 (0%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KPY +SSNNAL+K ++LLNA K G+TG LDP ATGLLP+C GEATKFS+YL +ADK Y A
Sbjct: 19 KPYDISSNNALQKARWLLNAAKAGHTGVLDPLATGLLPVCLGEATKFSSYLLDADKGYRA 78
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
+ G+ T TGD+EG+++ + + E +E L F G+ISQ+PPMYSALK++G PLY
Sbjct: 79 TVRFGVVTTTGDVEGEVVS-ERPVEFGREQLEAALARFRGEISQVPPMYSALKHQGKPLY 137
Query: 137 KYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
+YAR+GI + R+ R + I K+ ++ + + + C+KGTYIR L DIG+ LGCGAHL
Sbjct: 138 EYARAGIEVPREARQVTIRKLELLSFDGVSAEIDVLCTKGTYIRTLGCDIGEALGCGAHL 197
Query: 197 KYLRRIGIDKLTLDKN 212
LRR +LD++
Sbjct: 198 TALRRTATGGFSLDES 213
>sp|Q6F7I5|TRUB_ACIAD tRNA pseudouridine synthase B OS=Acinetobacter sp. (strain ADP1)
GN=truB PE=3 SV=1
Length = 318
Score = 218 bits (556), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/198 (52%), Positives = 137/198 (69%)
Query: 5 SISPVSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFS 64
S PVS V KP GLSSN L+K+++L A+K G+TG LDP ATGLLP+C GEATKFS
Sbjct: 26 SRRPVSGVFLLNKPLGLSSNGVLQKVRWLFRAQKAGHTGALDPLATGLLPICLGEATKFS 85
Query: 65 NYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPM 124
+YL ++ K Y+ ++ LG T TGD+EGK++ P + +++E +L F G I Q+PPM
Sbjct: 86 HYLLDSTKRYQTVVKLGQVTTTGDVEGKVVQSRSVPPLTRDMLELVLDGFRGDIQQVPPM 145
Query: 125 YSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSE 184
YSALK G PLY+ AR GI I+R+ R + I+ + ++D+ LTL + CSKGTYIRVL E
Sbjct: 146 YSALKRDGRPLYELARQGIEIEREARPVTIHALKLVDFDTESLTLDVTCSKGTYIRVLGE 205
Query: 185 DIGKMLGCGAHLKYLRRI 202
DIG+ LGCG HL L R+
Sbjct: 206 DIGEALGCGGHLTALHRV 223
>sp|Q3SKX3|TRUB_THIDA tRNA pseudouridine synthase B OS=Thiobacillus denitrificans (strain
ATCC 25259) GN=truB PE=3 SV=1
Length = 298
Score = 218 bits (556), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 105/208 (50%), Positives = 138/208 (66%), Gaps = 1/208 (0%)
Query: 4 PSISPVSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKF 63
P+ V V+ KP G++SN AL+K K+LLNAKK G+TGTLDPFA GLLPLCFGEATKF
Sbjct: 3 PARQAVDGVLLLNKPVGITSNAALQKAKWLLNAKKAGHTGTLDPFADGLLPLCFGEATKF 62
Query: 64 SNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPP 123
S YL +ADK Y AI+ LG+TT TGD EG+++ + + + I L F G+I QIPP
Sbjct: 63 SAYLLDADKRYRAILQLGVTTRTGDPEGEVL-ATREVRATCADIRAALPAFVGEIEQIPP 121
Query: 124 MYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLS 183
M+SALK++G PLY+YAR+G+ I R R + I + + P + + CS GTY+R L+
Sbjct: 122 MHSALKHQGRPLYEYARAGVEIARAPRRVHIRALDLFKCAPPRAVVDVQCSAGTYVRTLA 181
Query: 184 EDIGKMLGCGAHLKYLRRIGIDKLTLDK 211
ED+G LGCGAHL L R L++
Sbjct: 182 EDLGNALGCGAHLTALTRTASGGFLLEQ 209
>sp|Q2SML1|TRUB_HAHCH tRNA pseudouridine synthase B OS=Hahella chejuensis (strain KCTC
2396) GN=truB PE=3 SV=1
Length = 311
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 145/215 (67%)
Query: 7 SPVSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNY 66
+P++ V+ KP +SN L+K+KY LNA+K G+TG LDP ATG+LPLCFGEATKFS
Sbjct: 8 APLNGVMVVDKPQDWTSNAVLQKVKYALNAQKAGHTGALDPLATGVLPLCFGEATKFSQL 67
Query: 67 LSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYS 126
L ++DK Y +LG TT T D +G II + S+ +E +L F G + QIP MYS
Sbjct: 68 LLDSDKEYVTCAYLGRTTTTSDADGDIIAESPVPGLSVSDLESVLGKFRGNLKQIPSMYS 127
Query: 127 ALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDI 186
ALK+KG PLYK AR GI ++R+ R I I+++ ++DYT P+L LR+ CSKGTYIR L EDI
Sbjct: 128 ALKHKGTPLYKLARQGIEVEREARDIIIHELELLDYTPPFLRLRVLCSKGTYIRNLVEDI 187
Query: 187 GKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDH 221
G++LGCGAH+ LRR +L ++ ++ D
Sbjct: 188 GQVLGCGAHVMELRRTRCGPFSLADSVEFVSFADE 222
>sp|B0KHX6|TRUB_PSEPG tRNA pseudouridine synthase B OS=Pseudomonas putida (strain GB-1)
GN=truB PE=3 SV=1
Length = 305
Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/227 (47%), Positives = 148/227 (65%), Gaps = 5/227 (2%)
Query: 9 VSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLS 68
VS +I KP G +SN AL+K+++LLNA+K G+TG+LDP ATG+LPLCFGEATKFS YL
Sbjct: 11 VSGIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQYLL 70
Query: 69 EADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSAL 128
++DK YE ++ +G TT TGD EG+++ +++ IE +L F G ISQIPPMYSAL
Sbjct: 71 DSDKGYETVMQMGQTTNTGDAEGEVLQ-TRDVTVGRADIEALLPRFRGPISQIPPMYSAL 129
Query: 129 KYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGK 188
K G PLYK AR+G ++R+ R + I ++ +++ L + CSKGTYIR L EDIG+
Sbjct: 130 KRDGQPLYKLARAGEVVEREARSVTINRLELLECEGTRARLSVGCSKGTYIRTLVEDIGE 189
Query: 189 MLGCGAHLKYLRRIGIDKLTLDKNIAI----IAHVDHGKTTLIDHLL 231
LGCGA++ LRR L + + + AH D G L L+
Sbjct: 190 ALGCGAYVAELRRTQAGPFALAQTVTLEELEQAHADGGNEALDRFLM 236
>sp|B0UU15|TRUB_HAES2 tRNA pseudouridine synthase B OS=Haemophilus somnus (strain 2336)
GN=truB PE=3 SV=1
Length = 308
Score = 217 bits (553), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 100/188 (53%), Positives = 136/188 (72%), Gaps = 1/188 (0%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
K G+SSN+ ++K+K L A K G+TG LDP ATG+LP+C GEATKFS YL +ADK Y+
Sbjct: 19 KSQGMSSNDIMQKVKRLFQANKAGHTGALDPLATGMLPICLGEATKFSQYLLDADKRYQV 78
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
I LG T+T D +G+++ + + + I L F G+I Q+P M+SALKY+G LY
Sbjct: 79 IAKLGERTDTSDADGQVVQ-KREVNIDLAKILTALEQFRGEIMQVPTMFSALKYQGKALY 137
Query: 137 KYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
+YAR+GITI+R+ R I I+++ IDY IPYLTL +HCSKGTYIR L +D+G++LGCGAH+
Sbjct: 138 EYARAGITIEREARPISIFELKFIDYQIPYLTLEVHCSKGTYIRTLVDDLGEVLGCGAHV 197
Query: 197 KYLRRIGI 204
LRRI +
Sbjct: 198 TRLRRIAV 205
>sp|Q0I3P3|TRUB_HAES1 tRNA pseudouridine synthase B OS=Haemophilus somnus (strain 129Pt)
GN=truB PE=3 SV=1
Length = 308
Score = 217 bits (553), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 100/188 (53%), Positives = 136/188 (72%), Gaps = 1/188 (0%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
K G+SSN+ ++K+K L A K G+TG LDP ATG+LP+C GEATKFS YL +ADK Y+
Sbjct: 19 KSQGMSSNDIMQKVKRLFQANKAGHTGALDPLATGMLPICLGEATKFSQYLLDADKRYQV 78
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
I LG T+T D +G+++ + + + I L F G+I Q+P M+SALKY+G LY
Sbjct: 79 IAKLGERTDTSDADGQVVQ-KREVNIDLAKILTALEQFRGEIMQVPTMFSALKYQGKALY 137
Query: 137 KYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
+YAR+GITI+R+ R I I+++ IDY IPYLTL +HCSKGTYIR L +D+G++LGCGAH+
Sbjct: 138 EYARAGITIEREARPISIFELKFIDYQIPYLTLEVHCSKGTYIRTLVDDLGEVLGCGAHV 197
Query: 197 KYLRRIGI 204
LRRI +
Sbjct: 198 TRLRRIAV 205
>sp|A4IWL0|TRUB_FRATW tRNA pseudouridine synthase B OS=Francisella tularensis subsp.
tularensis (strain WY96-3418) GN=truB PE=3 SV=1
Length = 302
Score = 217 bits (553), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/192 (57%), Positives = 140/192 (72%), Gaps = 3/192 (1%)
Query: 11 VVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEA 70
VVI K K +SSN L+++KYL NA+KVG+TGTLDP ATG+LP+CFG ATK + YL +A
Sbjct: 12 VVINKAKD--ISSNKVLQQLKYLFNAQKVGHTGTLDPMATGVLPICFGRATKIAQYLLDA 69
Query: 71 DKYYEAIIHLGITTETGDIEGKIIDFNKNIPN-SIEIIEKILINFHGKISQIPPMYSALK 129
DK Y A I LGI T++GD EG+II + NIP S E +E +L F G + QIPPMYSALK
Sbjct: 70 DKEYIATIRLGIETDSGDAEGEIIAKSINIPELSAEYLETVLAKFRGDVVQIPPMYSALK 129
Query: 130 YKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKM 189
Y G PLYK AR G T++ K R IKIY++ ++++ I L +R+ CSKGTYIR L+ DIGK
Sbjct: 130 YNGQPLYKLAREGKTVEVKSRNIKIYELELLEFNIDSLKIRVKCSKGTYIRSLAIDIGKT 189
Query: 190 LGCGAHLKYLRR 201
LGCG HL L+R
Sbjct: 190 LGCGGHLIALQR 201
>sp|Q65SL2|TRUB_MANSM tRNA pseudouridine synthase B OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=truB PE=3 SV=1
Length = 305
Score = 217 bits (552), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 99/195 (50%), Positives = 138/195 (70%), Gaps = 1/195 (0%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP G+SSN+ L+K+K + A K G+TG LDP ATG+LP+C GEATKFS +L +ADK Y+
Sbjct: 19 KPQGMSSNDILQKVKRIYQANKAGHTGALDPLATGMLPICLGEATKFSQFLLDADKRYQV 78
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
I LG T+T D EG++++ +++ + + I L +F G I Q+P M+SALK+KG PLY
Sbjct: 79 IAKLGERTDTSDAEGQVVE-TRSVNVTEQKILDSLPHFRGDIMQVPTMFSALKHKGKPLY 137
Query: 137 KYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
+YAR+GI ++R+ R I I+++ I Y PYLTL +HCSKGTYIR L +D+G+ LGCGAH+
Sbjct: 138 EYARAGIVVEREARPISIFELNFISYEAPYLTLEVHCSKGTYIRTLVDDLGEYLGCGAHV 197
Query: 197 KYLRRIGIDKLTLDK 211
LRR + DK
Sbjct: 198 SMLRRTAVSDYPADK 212
>sp|A6VU31|TRUB_MARMS tRNA pseudouridine synthase B OS=Marinomonas sp. (strain MWYL1)
GN=truB PE=3 SV=1
Length = 308
Score = 216 bits (550), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 145/221 (65%), Gaps = 9/221 (4%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP GLSSN AL++++ L A K G+TG LDP ATG+LPLC GEATKFS YL +ADK Y
Sbjct: 17 KPIGLSSNQALQRVRRLYQAAKAGHTGALDPLATGMLPLCLGEATKFSQYLLDADKRYLT 76
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
I LG T TGD EG+++ + + E +E+IL F G+I QIPPMYSALK++G PLY
Sbjct: 77 CIQLGKRTTTGDREGEVLTEDSVPTLTDESLEEILNGFRGEIEQIPPMYSALKHEGKPLY 136
Query: 137 KYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
+YAR GI I+RK R + I +T++ T LTL I CSKGTYIR + EDIG+ LGCGAHL
Sbjct: 137 EYARQGIVIERKRRRVTISNLTLVSRTEDTLTLDIQCSKGTYIRTIGEDIGEALGCGAHL 196
Query: 197 KYLRRIGI------DKLTLDKNIAIIAHVDHGKTTLIDHLL 231
L RI + +TL++ AI + G L HL+
Sbjct: 197 HSLHRISTAGYLPENMMTLEEFEAI---AEQGYDALDAHLI 234
>sp|A0Q7W5|TRUB_FRATN tRNA pseudouridine synthase B OS=Francisella tularensis subsp.
novicida (strain U112) GN=truB PE=3 SV=1
Length = 302
Score = 216 bits (550), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 110/192 (57%), Positives = 139/192 (72%), Gaps = 3/192 (1%)
Query: 11 VVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEA 70
VVI K K +SSN L+++KYL NA+K G+TGTLDP ATG+LP+CFG ATK + YL +A
Sbjct: 12 VVINKAK--DVSSNKVLQQLKYLFNAQKAGHTGTLDPMATGVLPICFGRATKIAQYLLDA 69
Query: 71 DKYYEAIIHLGITTETGDIEGKIIDFNKNIPN-SIEIIEKILINFHGKISQIPPMYSALK 129
DK Y A I LGI T++GD EG+II + NIP S E +E +L F G + QIPPMYSALK
Sbjct: 70 DKEYIATIRLGIETDSGDAEGEIIAKSPNIPELSAEYLETVLAKFRGDVVQIPPMYSALK 129
Query: 130 YKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKM 189
Y G PLYK AR G T++ K R IKIY++ ++++ I L +R+ CSKGTYIR L+ DIGK
Sbjct: 130 YNGQPLYKLAREGKTVEVKSRNIKIYELELLEFDIDSLKIRVKCSKGTYIRSLAIDIGKT 189
Query: 190 LGCGAHLKYLRR 201
LGCG HL L+R
Sbjct: 190 LGCGGHLIALQR 201
>sp|A4XYD8|TRUB_PSEMY tRNA pseudouridine synthase B OS=Pseudomonas mendocina (strain ymp)
GN=truB PE=3 SV=1
Length = 306
Score = 216 bits (550), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 104/214 (48%), Positives = 140/214 (65%), Gaps = 5/214 (2%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP G +SN AL+K+++LLNA+K G+TG+LDP ATG+LPLCFGEATKFS YL +ADK YE
Sbjct: 19 KPRGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQYLLDADKGYET 78
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
+ LG+TT TGD EG++++ E IE +L F G+I QIPPMYSALK G PLY
Sbjct: 79 VAQLGVTTTTGDAEGEVLERRPVTVGRPE-IEALLPRFRGEIKQIPPMYSALKKDGQPLY 137
Query: 137 KYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
K AR+G ++R+ R + I ++ ++ L + CSKGTYIR L ED+G++LGCGAH+
Sbjct: 138 KLARAGEVVEREARSVTIARLELLALEGEQARLSVDCSKGTYIRTLVEDLGQLLGCGAHV 197
Query: 197 KYLRRIGIDKLTLDKNIAI----IAHVDHGKTTL 226
LRR L + + + H + G L
Sbjct: 198 AELRRTKAGPFELARTVTLEELEAVHAEGGSEAL 231
>sp|A1K7B7|TRUB_AZOSB tRNA pseudouridine synthase B OS=Azoarcus sp. (strain BH72) GN=truB
PE=3 SV=1
Length = 300
Score = 216 bits (550), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 146/215 (67%), Gaps = 2/215 (0%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP G++SN AL+ + LLNA K G+TGTLDP A+GLLPL FGEATKFS L +ADK YEA
Sbjct: 18 KPSGMTSNGALQTARRLLNAAKAGHTGTLDPMASGLLPLTFGEATKFSQILLDADKTYEA 77
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
+ LG TT+TGD +G ++ + + E +E++L F G+I Q+PPMYSALK G PLY
Sbjct: 78 GVKLGTTTDTGDADGNVV-AEHPVSVTREALEEVLSRFRGEIDQLPPMYSALKRDGKPLY 136
Query: 137 KYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
+YAR+GI I+R++R + I+ + +I ++ + ++R+ CSKGTYIR L+ DIG LGCGA+L
Sbjct: 137 EYARAGIEIEREVRRVTIHDLELIAFSGEHFSMRVRCSKGTYIRTLAMDIGAALGCGAYL 196
Query: 197 KYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLL 231
LRR I + + + A ++ + D LL
Sbjct: 197 DALRRTAIGDFDAARAVTLEA-LEASPAAMRDGLL 230
>sp|A4VPN8|TRUB_PSEU5 tRNA pseudouridine synthase B OS=Pseudomonas stutzeri (strain
A1501) GN=truB PE=3 SV=1
Length = 305
Score = 216 bits (549), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 102/207 (49%), Positives = 141/207 (68%), Gaps = 1/207 (0%)
Query: 9 VSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLS 68
VS +I KP G +SN AL+K+++LLNA+K G+TG+LDP ATG+LPLCFGEATKFS YL
Sbjct: 11 VSGIILLDKPRGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQYLL 70
Query: 69 EADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSAL 128
+ADK YE ++ LG+TT T D EG++++ K + + E +E +L F G I Q+PPMYSAL
Sbjct: 71 DADKAYETVMQLGVTTTTADAEGEVLE-RKPVAVTREQLEALLPQFRGDILQVPPMYSAL 129
Query: 129 KYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGK 188
K G PLYK AR+G ++R+ R + I ++ ++ L + CSKGTYIR L ED+G+
Sbjct: 130 KRDGQPLYKLARAGEVVEREPRSVNIARLELLALEGDKARLAVACSKGTYIRTLVEDLGQ 189
Query: 189 MLGCGAHLKYLRRIGIDKLTLDKNIAI 215
LGCGAH+ LRR L + + +
Sbjct: 190 QLGCGAHVAELRRTQAGPFDLSQTVTL 216
>sp|Q9CMQ7|TRUB_PASMU tRNA pseudouridine synthase B OS=Pasteurella multocida (strain
Pm70) GN=truB PE=3 SV=1
Length = 307
Score = 216 bits (549), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 135/188 (71%), Gaps = 1/188 (0%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP G+SSN+ ++K+K + A K G+TG LDP ATG+LP+C GEATKFS +L +ADK Y+
Sbjct: 19 KPQGMSSNDIMQKVKRVFQANKAGHTGALDPLATGMLPICLGEATKFSQFLLDADKRYQV 78
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
LG T+T D EG++++ +++ ++ I L +F G + Q+P M+SALK++G PLY
Sbjct: 79 TAKLGERTDTSDAEGQVVE-TRDVQVDVQDILAALPHFRGNLMQVPTMFSALKHQGKPLY 137
Query: 137 KYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
+YAR+GIT++R+ R I I+ + I Y PYLTL +HCSKGTYIR L +D+G+ LGCGAH+
Sbjct: 138 EYARAGITVEREARPITIFDLQFIAYDAPYLTLEVHCSKGTYIRTLVDDLGEYLGCGAHV 197
Query: 197 KYLRRIGI 204
LRR +
Sbjct: 198 TVLRRTAV 205
>sp|Q5NER4|TRUB_FRATT tRNA pseudouridine synthase B OS=Francisella tularensis subsp.
tularensis (strain SCHU S4 / Schu 4) GN=truB PE=3 SV=1
Length = 302
Score = 216 bits (549), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 110/192 (57%), Positives = 139/192 (72%), Gaps = 3/192 (1%)
Query: 11 VVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEA 70
VVI K K +SSN L+++KYL NA+K G+TGTLDP ATG+LP+CFG ATK + YL +A
Sbjct: 12 VVINKVKD--ISSNKVLQQLKYLFNAQKAGHTGTLDPMATGVLPICFGRATKIAQYLLDA 69
Query: 71 DKYYEAIIHLGITTETGDIEGKIIDFNKNIPN-SIEIIEKILINFHGKISQIPPMYSALK 129
DK Y A I LGI T++GD EG+II + NIP S E +E +L F G + QIPPMYSALK
Sbjct: 70 DKEYIATIRLGIETDSGDAEGEIIAKSINIPELSAEYLETVLAKFRGDVVQIPPMYSALK 129
Query: 130 YKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKM 189
Y G PLYK AR G T++ K R IKIY++ ++++ I L +R+ CSKGTYIR L+ DIGK
Sbjct: 130 YNGQPLYKLAREGKTVEVKSRNIKIYELELLEFNIDSLKIRVKCSKGTYIRSLAIDIGKT 189
Query: 190 LGCGAHLKYLRR 201
LGCG HL L+R
Sbjct: 190 LGCGGHLIALQR 201
>sp|Q14G67|TRUB_FRAT1 tRNA pseudouridine synthase B OS=Francisella tularensis subsp.
tularensis (strain FSC 198) GN=truB PE=3 SV=1
Length = 302
Score = 216 bits (549), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 110/192 (57%), Positives = 139/192 (72%), Gaps = 3/192 (1%)
Query: 11 VVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEA 70
VVI K K +SSN L+++KYL NA+K G+TGTLDP ATG+LP+CFG ATK + YL +A
Sbjct: 12 VVINKVKD--ISSNKVLQQLKYLFNAQKAGHTGTLDPMATGVLPICFGRATKIAQYLLDA 69
Query: 71 DKYYEAIIHLGITTETGDIEGKIIDFNKNIPN-SIEIIEKILINFHGKISQIPPMYSALK 129
DK Y A I LGI T++GD EG+II + NIP S E +E +L F G + QIPPMYSALK
Sbjct: 70 DKEYIATIRLGIETDSGDAEGEIIAKSINIPELSAEYLETVLAKFRGDVVQIPPMYSALK 129
Query: 130 YKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKM 189
Y G PLYK AR G T++ K R IKIY++ ++++ I L +R+ CSKGTYIR L+ DIGK
Sbjct: 130 YNGQPLYKLAREGKTVEVKSRNIKIYELELLEFNIDSLKIRVKCSKGTYIRSLAIDIGKT 189
Query: 190 LGCGAHLKYLRR 201
LGCG HL L+R
Sbjct: 190 LGCGGHLIALQR 201
>sp|A5W985|TRUB_PSEP1 tRNA pseudouridine synthase B OS=Pseudomonas putida (strain F1 /
ATCC 700007) GN=truB PE=3 SV=1
Length = 305
Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 106/227 (46%), Positives = 148/227 (65%), Gaps = 5/227 (2%)
Query: 9 VSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLS 68
+S +I KP G +SN AL+K+++LLNA+K G+TG+LDP ATG+LPLCFGEATKFS YL
Sbjct: 11 ISGIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQYLL 70
Query: 69 EADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSAL 128
++DK YE ++ +G TT TGD EG+++ +++ IE +L F G ISQIPPMYSAL
Sbjct: 71 DSDKGYETVMQMGQTTNTGDAEGEVLQ-TRDVTVGRADIEALLPRFRGPISQIPPMYSAL 129
Query: 129 KYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGK 188
K G PLYK AR+G ++R+ R + I ++ +++ L + CSKGTYIR L EDIG+
Sbjct: 130 KRDGQPLYKLARAGEVVEREARSVTINRLELLECEGTRARLSVGCSKGTYIRTLVEDIGE 189
Query: 189 MLGCGAHLKYLRRIGIDKLTLDKNIAI----IAHVDHGKTTLIDHLL 231
LGCGA++ LRR L + + + AH + G L L+
Sbjct: 190 ALGCGAYVAELRRTQAGPFALAQTVTLEELEQAHAEGGNEALDRFLM 236
>sp|A3N007|TRUB_ACTP2 tRNA pseudouridine synthase B OS=Actinobacillus pleuropneumoniae
serotype 5b (strain L20) GN=truB PE=3 SV=1
Length = 305
Score = 214 bits (546), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 141/204 (69%), Gaps = 4/204 (1%)
Query: 17 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 76
KP G+SSN+ L+K+K L A K G+TG LDP ATG+LP+C GEATKFS +L ++DK Y+
Sbjct: 19 KPQGMSSNDILQKVKRLFQANKAGHTGALDPLATGMLPICLGEATKFSQFLLDSDKRYQV 78
Query: 77 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 136
LG T+T D EG++++ EII L F G I Q+P M+SALK+ G PLY
Sbjct: 79 TAKLGKRTDTSDAEGQVVETRAVNVGEAEII-TALEQFRGDILQVPTMFSALKHNGKPLY 137
Query: 137 KYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 196
+YAR GIT++R+ R I I+++ I+Y PYLTL +HCSKGTYIR L +D+G++LGCGAH+
Sbjct: 138 EYARQGITVEREARPITIFELRFIEYAAPYLTLEVHCSKGTYIRTLVDDLGEVLGCGAHV 197
Query: 197 KYLRRIGIDKLTLDKNIAIIAHVD 220
LRR+ + ++ A++++ D
Sbjct: 198 TVLRRLAVANYPIE---AMMSYAD 218
>sp|Q3KI82|TRUB_PSEPF tRNA pseudouridine synthase B OS=Pseudomonas fluorescens (strain
Pf0-1) GN=truB PE=3 SV=1
Length = 305
Score = 214 bits (546), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 114/278 (41%), Positives = 164/278 (58%), Gaps = 23/278 (8%)
Query: 9 VSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLS 68
VS +I KP G +SN AL+K+++LLNA+K G+TG+LDP ATG+LPLCFGEATKFS YL
Sbjct: 11 VSGIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQYLL 70
Query: 69 EADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSAL 128
++DK YE + LG TT T D EG+++ + + IE +L F G+ISQIPPMYSAL
Sbjct: 71 DSDKGYETLAQLGKTTTTADAEGEVLQ-ERPVTVGQADIEAVLPKFRGQISQIPPMYSAL 129
Query: 129 KYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGK 188
K G PLYK AR+G ++R+ R + I ++ ++ + L + CSKGTYIR L EDIG+
Sbjct: 130 KRDGQPLYKLARAGEVVEREPRSVTIARLELLAFEGDTARLAVDCSKGTYIRTLVEDIGE 189
Query: 189 MLGCGAHLKYLRRIGIDKLTLDKNIAI----IAHVDHGKTTLIDHLLRQSGTFRKNQNIN 244
LGCGA++ LRR TL + + + H + G N+ ++
Sbjct: 190 QLGCGAYVAELRRTQAGPFTLAQTVTLEELEAVHAEGG-----------------NEAVD 232
Query: 245 ARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTP 281
+M S+ ++ + FS+ + + NG + D P
Sbjct: 233 RFLMPSDSGLQDWPLLQFSEASAFYWLNGQPVRAPDAP 270
>sp|Q0BN06|TRUB_FRATO tRNA pseudouridine synthase B OS=Francisella tularensis subsp.
holarctica (strain OSU18) GN=truB PE=3 SV=1
Length = 302
Score = 214 bits (545), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 110/192 (57%), Positives = 139/192 (72%), Gaps = 3/192 (1%)
Query: 11 VVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEA 70
VVI K K +SSN L+++KYL NA+K G+TGTLDP ATG+LP+CFG ATK + YL +A
Sbjct: 12 VVINKAKD--ISSNKVLQQLKYLFNAQKAGHTGTLDPMATGVLPICFGRATKIAQYLLDA 69
Query: 71 DKYYEAIIHLGITTETGDIEGKIIDFNKNIPN-SIEIIEKILINFHGKISQIPPMYSALK 129
DK Y A I LGI T++GD EG+II + NIP S E +E +L F G + QIPPMYSALK
Sbjct: 70 DKEYIATIRLGIETDSGDAEGEIIAKSINIPELSAEYLEIVLAKFSGDVVQIPPMYSALK 129
Query: 130 YKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKM 189
Y G PLYK AR G T++ K R IKIY++ ++++ I L +R+ CSKGTYIR L+ DIGK
Sbjct: 130 YNGQPLYKLAREGKTVEVKSRNIKIYELELLEFNIDSLKIRVKCSKGTYIRSLAIDIGKT 189
Query: 190 LGCGAHLKYLRR 201
LGCG HL L+R
Sbjct: 190 LGCGGHLIALQR 201
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.140 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 305,782,702
Number of Sequences: 539616
Number of extensions: 14013180
Number of successful extensions: 49137
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4491
Number of HSP's successfully gapped in prelim test: 487
Number of HSP's that attempted gapping in prelim test: 33288
Number of HSP's gapped (non-prelim): 7660
length of query: 793
length of database: 191,569,459
effective HSP length: 126
effective length of query: 667
effective length of database: 123,577,843
effective search space: 82426421281
effective search space used: 82426421281
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)