Query psy1760
Match_columns 793
No_of_seqs 734 out of 5029
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 18:14:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1760.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1760hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1217 TypA Predicted membran 100.0 6E-169 1E-173 1339.7 48.2 574 211-790 6-581 (603)
2 TIGR01394 TypA_BipA GTP-bindin 100.0 3E-141 7E-146 1228.3 57.0 574 211-790 2-577 (594)
3 PRK10218 GTP-binding protein; 100.0 2E-138 5E-143 1202.3 58.2 575 211-790 6-582 (607)
4 KOG0462|consensus 100.0 3.3E-94 7.3E-99 781.1 34.2 544 211-790 61-634 (650)
5 COG0480 FusA Translation elong 100.0 2.6E-81 5.7E-86 729.0 46.7 449 211-683 11-680 (697)
6 TIGR01393 lepA GTP-binding pro 100.0 6.1E-81 1.3E-85 726.3 48.3 492 211-738 4-541 (595)
7 PRK05433 GTP-binding protein L 100.0 1.1E-80 2.3E-85 724.9 46.5 491 211-738 8-544 (600)
8 KOG0465|consensus 100.0 1E-79 2.2E-84 674.0 30.0 447 211-684 40-711 (721)
9 COG0481 LepA Membrane GTPase L 100.0 1.4E-78 3E-83 649.2 37.7 492 211-738 10-547 (603)
10 PRK00007 elongation factor G; 100.0 4.9E-76 1.1E-80 700.5 42.4 448 211-683 11-680 (693)
11 TIGR00484 EF-G translation elo 100.0 1.7E-74 3.8E-79 688.1 44.2 448 211-683 11-677 (689)
12 PRK12739 elongation factor G; 100.0 8.5E-74 1.8E-78 681.7 44.0 448 211-683 9-677 (691)
13 PRK07560 elongation factor EF- 100.0 7.2E-73 1.6E-77 677.0 42.1 458 211-683 21-702 (731)
14 PRK13351 elongation factor G; 100.0 6.6E-72 1.4E-76 667.3 46.7 449 211-683 9-677 (687)
15 PRK12740 elongation factor G; 100.0 1.4E-70 3.1E-75 654.8 43.0 443 216-683 1-659 (668)
16 TIGR00490 aEF-2 translation el 100.0 5.1E-70 1.1E-74 650.8 40.7 458 211-683 20-700 (720)
17 PLN00116 translation elongatio 100.0 1.8E-68 4E-73 645.6 41.7 462 211-683 20-806 (843)
18 PTZ00416 elongation factor 2; 100.0 1.9E-67 4.1E-72 635.6 44.3 461 211-683 20-799 (836)
19 PRK00020 truB tRNA pseudouridi 100.0 2.1E-66 4.5E-71 528.9 15.6 214 1-214 1-216 (244)
20 PRK04642 truB tRNA pseudouridi 100.0 4.3E-66 9.3E-71 543.1 16.1 213 3-215 3-215 (300)
21 PRK01851 truB tRNA pseudouridi 100.0 5.5E-65 1.2E-69 536.3 15.2 212 2-214 4-219 (303)
22 TIGR00431 TruB tRNA pseudourid 100.0 7.6E-65 1.6E-69 510.1 14.6 205 9-214 1-205 (209)
23 PRK00130 truB tRNA pseudouridi 100.0 6.7E-65 1.5E-69 535.9 14.3 206 9-214 1-206 (290)
24 PRK00989 truB tRNA pseudouridi 100.0 1.7E-64 3.8E-69 511.4 15.3 206 7-214 6-212 (230)
25 PRK02755 truB tRNA pseudouridi 100.0 1.2E-64 2.5E-69 533.7 14.5 205 9-214 2-209 (295)
26 PRK05033 truB tRNA pseudouridi 100.0 3.4E-64 7.4E-69 532.3 15.6 208 6-214 6-213 (312)
27 PRK02484 truB tRNA pseudouridi 100.0 3.5E-64 7.6E-69 530.6 14.3 206 9-214 2-214 (294)
28 PRK01550 truB tRNA pseudouridi 100.0 3.3E-64 7.1E-69 533.2 14.1 206 9-214 1-213 (304)
29 PRK14124 tRNA pseudouridine sy 100.0 4E-64 8.6E-69 531.8 14.3 205 9-214 2-206 (308)
30 cd00506 PseudoU_synth_TruB_lik 100.0 4.3E-64 9.4E-69 507.0 13.8 204 11-214 1-206 (210)
31 PRK05389 truB tRNA pseudouridi 100.0 6.7E-64 1.4E-68 530.2 15.6 208 6-214 9-217 (305)
32 PRK03287 truB tRNA pseudouridi 100.0 6.8E-64 1.5E-68 527.8 15.0 212 1-214 2-217 (298)
33 PRK01528 truB tRNA pseudouridi 100.0 6.7E-64 1.4E-68 526.4 14.7 205 10-215 3-209 (292)
34 PRK14123 tRNA pseudouridine sy 100.0 9.1E-64 2E-68 530.0 14.6 206 9-214 2-214 (305)
35 PRK04099 truB tRNA pseudouridi 100.0 1.7E-63 3.7E-68 517.0 14.6 204 9-213 1-204 (273)
36 PRK14846 truB tRNA pseudouridi 100.0 5.1E-63 1.1E-67 521.3 14.9 204 10-214 3-208 (345)
37 PRK14122 tRNA pseudouridine sy 100.0 4.7E-63 1E-67 522.8 14.4 203 12-214 3-239 (312)
38 cd02573 PseudoU_synth_EcTruB P 100.0 4.9E-63 1.1E-67 519.3 14.4 204 11-214 1-206 (277)
39 PRK02193 truB tRNA pseudouridi 100.0 8.2E-63 1.8E-67 515.1 14.0 200 12-211 2-203 (279)
40 KOG0464|consensus 100.0 5E-61 1.1E-65 503.5 12.9 456 211-690 38-745 (753)
41 cd02867 PseudoU_synth_TruB_4 P 100.0 6E-60 1.3E-64 499.2 14.2 200 11-210 1-233 (312)
42 PRK00741 prfC peptide chain re 100.0 1.9E-56 4.2E-61 513.4 35.0 362 211-598 11-469 (526)
43 TIGR00503 prfC peptide chain r 100.0 1.5E-55 3.2E-60 506.3 34.9 361 211-597 12-469 (527)
44 KOG0469|consensus 100.0 1.6E-55 3.6E-60 470.9 26.8 465 211-690 20-808 (842)
45 cd02868 PseudoU_synth_hTruB2_l 100.0 5.2E-53 1.1E-57 431.7 13.8 203 11-213 1-212 (226)
46 COG0130 TruB Pseudouridine syn 100.0 9E-53 2E-57 437.9 14.6 181 3-215 5-188 (271)
47 PF01509 TruB_N: TruB family p 100.0 8.6E-50 1.9E-54 383.4 12.6 149 31-179 1-149 (149)
48 cd02572 PseudoU_synth_hDyskeri 100.0 1.2E-49 2.5E-54 395.4 12.4 170 10-214 2-174 (182)
49 TIGR00425 CBF5 rRNA pseudourid 100.0 5E-48 1.1E-52 415.1 12.8 171 9-214 33-203 (322)
50 COG4108 PrfC Peptide chain rel 100.0 3.6E-46 7.7E-51 397.7 23.9 359 211-595 13-468 (528)
51 PRK04270 H/ACA RNA-protein com 100.0 1.2E-47 2.6E-52 410.9 12.0 172 8-214 20-191 (300)
52 KOG0468|consensus 100.0 4.7E-44 1E-48 393.7 29.9 463 210-683 128-907 (971)
53 KOG0467|consensus 100.0 2.8E-42 6.1E-47 386.8 25.0 461 211-683 10-829 (887)
54 COG5256 TEF1 Translation elong 100.0 7.4E-41 1.6E-45 358.4 27.2 281 211-502 8-320 (428)
55 PLN00043 elongation factor 1-a 100.0 2.6E-39 5.7E-44 366.2 24.6 277 211-498 8-318 (447)
56 CHL00071 tufA elongation facto 100.0 8.3E-39 1.8E-43 360.1 25.3 281 211-499 13-308 (409)
57 PTZ00141 elongation factor 1- 100.0 1.1E-38 2.4E-43 361.4 25.0 278 211-499 8-319 (446)
58 PRK12736 elongation factor Tu; 100.0 1.6E-38 3.6E-43 356.0 25.3 279 211-499 13-298 (394)
59 PRK12735 elongation factor Tu; 100.0 5.2E-38 1.1E-42 352.3 25.3 281 211-499 13-300 (396)
60 PRK00049 elongation factor Tu; 100.0 8E-38 1.7E-42 350.5 25.8 283 209-499 11-300 (396)
61 TIGR00485 EF-Tu translation el 100.0 5.9E-38 1.3E-42 352.0 24.8 279 210-498 12-297 (394)
62 PLN03126 Elongation factor Tu; 100.0 8.4E-38 1.8E-42 355.2 25.3 281 211-499 82-377 (478)
63 PRK12317 elongation factor 1-a 100.0 3.4E-37 7.5E-42 349.5 24.5 279 211-500 7-312 (425)
64 TIGR02034 CysN sulfate adenyly 100.0 7E-37 1.5E-41 344.0 26.3 276 212-500 2-302 (406)
65 PLN03127 Elongation factor Tu; 100.0 5.9E-37 1.3E-41 346.7 25.5 281 211-498 62-350 (447)
66 KOG0460|consensus 100.0 7.6E-38 1.6E-42 324.0 14.0 284 211-502 55-345 (449)
67 COG0050 TufB GTPases - transla 100.0 2.1E-37 4.6E-42 315.4 15.7 282 211-502 13-301 (394)
68 PRK05124 cysN sulfate adenylyl 100.0 1.9E-35 4.1E-40 337.4 26.2 278 211-500 28-330 (474)
69 TIGR00483 EF-1_alpha translati 100.0 1.1E-35 2.3E-40 337.3 23.4 278 211-499 8-313 (426)
70 PTZ00327 eukaryotic translatio 100.0 2E-34 4.4E-39 325.4 22.4 260 210-500 34-353 (460)
71 PRK05506 bifunctional sulfate 100.0 9.4E-34 2E-38 335.7 24.7 277 211-500 25-326 (632)
72 PRK05306 infB translation init 100.0 3.6E-33 7.8E-38 330.9 28.5 418 211-683 291-771 (787)
73 PRK10512 selenocysteinyl-tRNA- 100.0 1.8E-33 4E-38 329.1 24.2 251 212-498 2-260 (614)
74 COG2895 CysN GTPases - Sulfate 100.0 4.3E-33 9.3E-38 290.9 21.3 296 212-525 8-328 (431)
75 TIGR00487 IF-2 translation ini 100.0 5E-32 1.1E-36 314.7 28.9 298 211-556 88-420 (587)
76 PRK04000 translation initiatio 100.0 2.1E-32 4.5E-37 307.9 24.0 259 211-500 10-320 (411)
77 KOG0458|consensus 100.0 1.9E-32 4.1E-37 303.0 22.3 275 211-496 178-488 (603)
78 TIGR03680 eif2g_arch translati 100.0 4.9E-32 1.1E-36 304.9 25.0 259 211-500 5-315 (406)
79 TIGR00475 selB selenocysteine- 100.0 1.1E-31 2.4E-36 313.3 24.3 252 212-497 2-260 (581)
80 COG3276 SelB Selenocysteine-sp 100.0 9.9E-31 2.1E-35 282.7 20.3 250 212-498 2-256 (447)
81 CHL00189 infB translation init 100.0 2.5E-30 5.4E-35 304.1 22.5 249 211-496 245-500 (742)
82 KOG1145|consensus 100.0 3.2E-29 7E-34 273.8 18.5 249 211-496 154-406 (683)
83 COG5258 GTPBP1 GTPase [General 100.0 3.1E-28 6.7E-33 256.1 23.3 277 209-502 116-441 (527)
84 cd01885 EF2 EF2 (for archaea a 100.0 3.7E-29 8.1E-34 258.3 15.6 190 211-402 1-222 (222)
85 PF00009 GTP_EFTU: Elongation 100.0 2.2E-29 4.7E-34 254.5 10.4 180 211-401 4-188 (188)
86 KOG0459|consensus 100.0 2.3E-28 5E-33 258.8 16.6 280 211-502 80-394 (501)
87 cd01884 EF_Tu EF-Tu subfamily. 100.0 3.2E-28 7E-33 247.1 14.7 190 211-402 3-195 (195)
88 COG0532 InfB Translation initi 100.0 3.3E-27 7.2E-32 261.8 21.7 251 212-499 7-263 (509)
89 cd01886 EF-G Elongation factor 100.0 8.4E-28 1.8E-32 255.8 15.7 143 212-354 1-145 (270)
90 cd04168 TetM_like Tet(M)-like 99.9 1.1E-27 2.5E-32 250.4 15.1 181 212-402 1-237 (237)
91 COG5257 GCD11 Translation init 99.9 7.2E-27 1.6E-31 241.4 18.2 255 209-494 9-310 (415)
92 PRK04004 translation initiatio 99.9 2.1E-26 4.6E-31 268.4 21.7 272 211-496 7-327 (586)
93 cd01891 TypA_BipA TypA (tyrosi 99.9 2.1E-26 4.6E-31 233.7 16.3 192 211-402 3-194 (194)
94 KOG0461|consensus 99.9 1.9E-26 4.1E-31 239.3 15.4 246 211-482 8-267 (522)
95 cd04169 RF3 RF3 subfamily. Pe 99.9 1.8E-26 3.9E-31 245.3 15.4 143 211-353 3-151 (267)
96 TIGR00491 aIF-2 translation in 99.9 5.7E-25 1.2E-29 255.4 22.7 255 212-494 6-323 (590)
97 cd01883 EF1_alpha Eukaryotic e 99.9 5.9E-26 1.3E-30 235.1 12.9 185 212-398 1-215 (219)
98 cd04166 CysN_ATPS CysN_ATPS su 99.9 1.1E-25 2.4E-30 231.2 13.2 186 212-402 1-207 (208)
99 cd04170 EF-G_bact Elongation f 99.9 1.4E-23 3E-28 224.1 14.8 142 212-353 1-144 (268)
100 cd01890 LepA LepA subfamily. 99.9 4.6E-23 1E-27 205.5 16.4 174 211-402 1-179 (179)
101 cd04167 Snu114p Snu114p subfam 99.9 4.8E-23 1E-27 212.4 14.1 190 211-402 1-213 (213)
102 KOG2559|consensus 99.9 2.2E-23 4.8E-28 206.2 9.3 195 5-210 5-253 (318)
103 PRK14845 translation initiatio 99.9 1.1E-21 2.3E-26 237.8 23.7 247 223-497 474-783 (1049)
104 cd01889 SelB_euk SelB subfamil 99.9 1.7E-22 3.8E-27 204.6 13.8 173 212-403 2-189 (192)
105 cd01888 eIF2_gamma eIF2-gamma 99.9 1.5E-22 3.2E-27 207.3 13.0 166 211-403 1-202 (203)
106 COG0486 ThdF Predicted GTPase 99.9 1.3E-22 2.9E-27 222.5 10.4 234 102-402 137-378 (454)
107 cd04165 GTPBP1_like GTPBP1-lik 99.9 1.1E-21 2.3E-26 203.6 13.1 178 212-402 1-224 (224)
108 cd00881 GTP_translation_factor 99.9 3.5E-21 7.7E-26 192.7 15.9 181 212-402 1-189 (189)
109 cd04171 SelB SelB subfamily. 99.8 8.5E-20 1.8E-24 178.4 14.0 158 212-396 2-162 (164)
110 cd03709 lepA_C lepA_C: This fa 99.8 2.6E-20 5.5E-25 161.6 8.3 78 605-682 1-79 (80)
111 PRK05291 trmE tRNA modificatio 99.8 4.2E-20 9.1E-25 210.4 11.7 229 102-401 135-371 (449)
112 KOG2529|consensus 99.8 3.1E-20 6.7E-25 199.2 9.2 169 9-211 67-237 (395)
113 PF00679 EFG_C: Elongation fac 99.8 4.2E-20 9E-25 163.7 8.2 82 602-683 1-82 (89)
114 cd03710 BipA_TypA_C BipA_TypA_ 99.8 8.7E-20 1.9E-24 158.0 9.3 78 605-682 1-78 (79)
115 KOG0463|consensus 99.8 2.3E-19 4.9E-24 188.4 14.3 274 209-499 132-457 (641)
116 smart00838 EFG_C Elongation fa 99.8 5.3E-20 1.1E-24 161.7 7.9 80 603-683 1-80 (85)
117 cd04097 mtEFG1_C mtEFG1_C: C-t 99.8 8.9E-20 1.9E-24 157.5 8.8 78 605-683 1-78 (78)
118 cd03711 Tet_C Tet_C: C-terminu 99.8 8.8E-20 1.9E-24 157.6 8.7 78 605-683 1-78 (78)
119 COG1160 Predicted GTPases [Gen 99.8 1.7E-18 3.6E-23 190.0 17.6 218 211-475 4-235 (444)
120 TIGR00450 mnmE_trmE_thdF tRNA 99.8 4.3E-19 9.4E-24 201.1 13.2 225 102-399 127-359 (442)
121 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 2.2E-18 4.8E-23 169.4 14.7 161 212-399 2-165 (168)
122 cd04096 eEF2_snRNP_like_C eEF2 99.8 5.1E-19 1.1E-23 153.6 8.3 79 605-683 1-80 (80)
123 cd04098 eEF2_C_snRNP eEF2_C_sn 99.8 6E-19 1.3E-23 153.0 8.4 79 605-683 1-80 (80)
124 KOG1143|consensus 99.8 9E-18 2E-22 176.5 18.1 289 205-520 162-503 (591)
125 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.8 6.8E-19 1.5E-23 152.1 8.1 78 605-683 1-78 (78)
126 KOG0466|consensus 99.8 9E-19 2E-23 179.9 9.6 257 211-498 39-359 (466)
127 COG1159 Era GTPase [General fu 99.8 2.8E-18 6.2E-23 179.0 13.5 159 212-402 8-174 (298)
128 COG1160 Predicted GTPases [Gen 99.8 2.9E-18 6.3E-23 188.1 13.7 190 171-397 145-348 (444)
129 cd01514 Elongation_Factor_C El 99.8 2.6E-18 5.6E-23 148.8 8.7 79 605-683 1-79 (79)
130 cd01894 EngA1 EngA1 subfamily. 99.7 1.1E-17 2.4E-22 162.0 13.4 149 214-399 1-157 (157)
131 PF02421 FeoB_N: Ferrous iron 99.7 2.5E-18 5.4E-23 167.1 7.9 146 212-395 2-156 (156)
132 TIGR03594 GTPase_EngA ribosome 99.7 1.3E-17 2.8E-22 189.9 14.7 193 169-399 138-343 (429)
133 KOG1144|consensus 99.7 4.5E-18 9.8E-23 191.1 10.5 222 212-461 477-749 (1064)
134 TIGR00436 era GTP-binding prot 99.7 2.1E-17 4.5E-22 176.7 15.0 156 212-402 2-166 (270)
135 cd04160 Arfrp1 Arfrp1 subfamil 99.7 9.9E-18 2.1E-22 165.0 11.1 161 212-397 1-166 (167)
136 PRK00093 GTP-binding protein D 99.7 2.7E-17 6E-22 187.6 16.4 191 169-398 140-342 (435)
137 PRK15494 era GTPase Era; Provi 99.7 3.2E-17 7E-22 180.5 14.3 158 211-402 53-218 (339)
138 TIGR03594 GTPase_EngA ribosome 99.7 6.6E-17 1.4E-21 184.1 15.4 154 212-402 1-162 (429)
139 cd01895 EngA2 EngA2 subfamily. 99.7 1.3E-16 2.7E-21 156.8 13.7 159 211-397 3-172 (174)
140 PRK03003 GTP-binding protein D 99.7 5.3E-16 1.1E-20 178.5 17.4 154 211-401 39-200 (472)
141 PRK03003 GTP-binding protein D 99.7 1.7E-16 3.7E-21 182.6 13.0 194 169-400 177-382 (472)
142 cd01898 Obg Obg subfamily. Th 99.7 3.4E-16 7.5E-21 154.3 13.0 153 212-398 2-169 (170)
143 cd01879 FeoB Ferrous iron tran 99.7 3.5E-16 7.6E-21 152.0 12.3 147 215-398 1-155 (158)
144 cd04164 trmE TrmE (MnmE, ThdF, 99.7 5.3E-16 1.1E-20 150.1 12.8 146 212-399 3-156 (157)
145 PRK00089 era GTPase Era; Revie 99.7 7.7E-16 1.7E-20 166.5 15.0 158 212-401 7-172 (292)
146 cd01897 NOG NOG1 is a nucleola 99.7 7.4E-16 1.6E-20 151.7 13.2 153 211-399 1-167 (168)
147 cd03690 Tet_II Tet_II: This su 99.7 4.6E-16 1E-20 136.6 9.9 85 407-496 1-85 (85)
148 TIGR03156 GTP_HflX GTP-binding 99.7 1.1E-15 2.3E-20 168.8 15.2 148 211-398 190-350 (351)
149 cd04157 Arl6 Arl6 subfamily. 99.7 6.6E-16 1.4E-20 150.9 12.0 154 212-397 1-161 (162)
150 cd04154 Arl2 Arl2 subfamily. 99.6 6.4E-16 1.4E-20 153.6 11.5 153 211-397 15-172 (173)
151 cd01864 Rab19 Rab19 subfamily. 99.6 1.2E-15 2.5E-20 150.3 13.1 155 211-398 4-164 (165)
152 PRK00093 GTP-binding protein D 99.6 1.5E-15 3.3E-20 173.3 15.3 153 212-401 3-163 (435)
153 PRK09518 bifunctional cytidyla 99.6 1.8E-15 3.8E-20 182.1 15.8 154 211-401 276-437 (712)
154 cd04124 RabL2 RabL2 subfamily. 99.6 1.5E-15 3.2E-20 149.3 12.0 154 212-400 2-158 (161)
155 PRK15467 ethanolamine utilizat 99.6 1E-15 2.2E-20 150.5 10.8 144 211-402 2-149 (158)
156 PRK09518 bifunctional cytidyla 99.6 1.2E-15 2.5E-20 183.7 12.9 197 169-401 414-622 (712)
157 cd04151 Arl1 Arl1 subfamily. 99.6 1.7E-15 3.8E-20 148.0 11.5 152 212-397 1-157 (158)
158 cd04145 M_R_Ras_like M-Ras/R-R 99.6 2.1E-15 4.6E-20 147.6 11.9 154 211-399 3-163 (164)
159 cd01860 Rab5_related Rab5-rela 99.6 2.5E-15 5.3E-20 147.1 12.2 158 211-400 2-163 (163)
160 cd04163 Era Era subfamily. Er 99.6 8.6E-15 1.9E-19 142.3 15.2 156 211-398 4-167 (168)
161 cd00878 Arf_Arl Arf (ADP-ribos 99.6 2.4E-15 5.2E-20 146.7 11.1 152 212-397 1-157 (158)
162 cd01878 HflX HflX subfamily. 99.6 6.5E-15 1.4E-19 150.5 14.8 150 211-399 42-204 (204)
163 PRK09554 feoB ferrous iron tra 99.6 4.4E-15 9.5E-20 178.2 14.2 152 211-400 4-168 (772)
164 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 2.8E-15 6.2E-20 150.7 10.7 160 212-400 5-170 (183)
165 cd01861 Rab6 Rab6 subfamily. 99.6 7.6E-15 1.7E-19 143.3 13.2 153 212-398 2-160 (161)
166 cd04092 mtEFG2_II_like mtEFG2_ 99.6 4E-15 8.8E-20 130.1 10.1 83 410-496 1-83 (83)
167 cd04113 Rab4 Rab4 subfamily. 99.6 4.9E-15 1.1E-19 145.0 11.7 155 212-398 2-160 (161)
168 KOG1191|consensus 99.6 1.7E-15 3.6E-20 166.1 9.1 327 11-399 43-449 (531)
169 TIGR00231 small_GTP small GTP- 99.6 2.3E-15 5E-20 144.4 9.1 149 211-395 2-159 (161)
170 smart00173 RAS Ras subfamily o 99.6 4E-15 8.6E-20 145.9 10.9 156 212-400 2-162 (164)
171 cd00880 Era_like Era (E. coli 99.6 1.1E-14 2.4E-19 139.7 13.7 154 215-398 1-162 (163)
172 TIGR03598 GTPase_YsxC ribosome 99.6 5.2E-15 1.1E-19 148.2 11.7 144 211-376 19-176 (179)
173 cd00879 Sar1 Sar1 subfamily. 99.6 3.7E-15 8E-20 150.3 10.1 157 211-399 20-190 (190)
174 cd04106 Rab23_lke Rab23-like s 99.6 1E-14 2.2E-19 142.6 12.9 152 212-397 2-160 (162)
175 PRK11058 GTPase HflX; Provisio 99.6 1.1E-14 2.5E-19 164.3 14.8 151 212-401 199-363 (426)
176 smart00175 RAB Rab subfamily o 99.6 1.1E-14 2.4E-19 142.3 12.9 155 212-400 2-162 (164)
177 cd00154 Rab Rab family. Rab G 99.6 9.4E-15 2E-19 140.9 12.1 153 212-396 2-158 (159)
178 cd04138 H_N_K_Ras_like H-Ras/N 99.6 8.2E-15 1.8E-19 142.7 11.6 152 212-399 3-161 (162)
179 cd04114 Rab30 Rab30 subfamily. 99.6 1.1E-14 2.4E-19 143.5 12.5 154 211-398 8-167 (169)
180 cd04147 Ras_dva Ras-dva subfam 99.6 9E-15 1.9E-19 149.0 11.8 158 212-402 1-165 (198)
181 cd04158 ARD1 ARD1 subfamily. 99.6 8.2E-15 1.8E-19 145.3 11.2 157 212-401 1-162 (169)
182 PRK04213 GTP-binding protein; 99.6 1.4E-14 3E-19 147.6 13.2 158 211-403 10-195 (201)
183 cd04161 Arl2l1_Arl13_like Arl2 99.6 9.4E-15 2E-19 144.7 11.5 160 212-397 1-166 (167)
184 cd01862 Rab7 Rab7 subfamily. 99.6 1.3E-14 2.8E-19 143.2 12.2 155 212-399 2-166 (172)
185 smart00178 SAR Sar1p-like memb 99.6 1.4E-14 3.1E-19 145.8 12.8 159 208-398 15-183 (184)
186 PRK12298 obgE GTPase CgtA; Rev 99.6 1.3E-14 2.7E-19 162.2 13.5 158 211-401 160-334 (390)
187 PRK12299 obgE GTPase CgtA; Rev 99.6 1.9E-14 4.1E-19 157.7 14.5 157 211-401 159-329 (335)
188 cd01866 Rab2 Rab2 subfamily. 99.6 1.4E-14 3.1E-19 143.2 12.1 157 211-399 5-165 (168)
189 cd01863 Rab18 Rab18 subfamily. 99.6 1.1E-14 2.4E-19 142.3 11.1 154 212-398 2-160 (161)
190 COG2229 Predicted GTPase [Gene 99.6 3.7E-14 8.1E-19 138.0 14.4 165 210-398 10-176 (187)
191 cd01881 Obg_like The Obg-like 99.6 9.7E-15 2.1E-19 144.5 10.6 150 215-398 1-175 (176)
192 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 1.6E-14 3.5E-19 143.9 12.0 153 211-397 16-173 (174)
193 cd01865 Rab3 Rab3 subfamily. 99.6 1.5E-14 3.3E-19 142.5 11.7 157 212-400 3-163 (165)
194 cd04088 EFG_mtEFG_II EFG_mtEFG 99.6 1.4E-14 2.9E-19 126.7 9.9 83 410-496 1-83 (83)
195 cd04149 Arf6 Arf6 subfamily. 99.6 1.9E-14 4.1E-19 142.8 12.1 153 211-397 10-167 (168)
196 cd04155 Arl3 Arl3 subfamily. 99.6 1.4E-14 3E-19 143.5 10.9 154 210-397 14-172 (173)
197 cd04140 ARHI_like ARHI subfami 99.6 2.4E-14 5.2E-19 141.1 12.4 154 211-397 2-162 (165)
198 cd03689 RF3_II RF3_II: this su 99.6 1.7E-14 3.6E-19 126.6 9.9 81 412-496 1-84 (85)
199 cd04119 RJL RJL (RabJ-Like) su 99.6 2.5E-14 5.4E-19 140.1 12.4 156 212-399 2-166 (168)
200 cd03691 BipA_TypA_II BipA_TypA 99.6 2E-14 4.3E-19 126.6 10.4 86 410-496 1-86 (86)
201 PTZ00369 Ras-like protein; Pro 99.6 1.6E-14 3.5E-19 146.0 11.2 158 211-401 6-168 (189)
202 PRK00454 engB GTP-binding prot 99.6 3.6E-14 7.8E-19 143.6 13.6 156 211-400 25-194 (196)
203 cd04139 RalA_RalB RalA/RalB su 99.6 1.9E-14 4.2E-19 140.5 11.2 155 212-399 2-161 (164)
204 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 3.2E-14 7E-19 140.0 12.8 155 211-399 3-163 (166)
205 PLN03118 Rab family protein; P 99.6 2.9E-14 6.4E-19 146.7 13.0 160 206-400 10-177 (211)
206 cd04175 Rap1 Rap1 subgroup. T 99.5 3.8E-14 8.3E-19 139.2 13.1 154 211-399 2-162 (164)
207 cd04150 Arf1_5_like Arf1-Arf5- 99.5 3.4E-14 7.4E-19 139.5 12.7 152 212-397 2-158 (159)
208 cd01868 Rab11_like Rab11-like. 99.5 3.7E-14 8E-19 139.3 12.8 155 211-399 4-164 (165)
209 TIGR02729 Obg_CgtA Obg family 99.5 3.1E-14 6.7E-19 155.9 13.6 154 211-399 158-328 (329)
210 cd04159 Arl10_like Arl10-like 99.5 2.6E-14 5.7E-19 138.0 11.4 152 213-397 2-158 (159)
211 PRK12296 obgE GTPase CgtA; Rev 99.5 3.5E-14 7.5E-19 161.5 14.1 155 211-400 160-340 (500)
212 cd00877 Ran Ran (Ras-related n 99.5 2.8E-14 6.2E-19 141.1 11.8 155 212-400 2-159 (166)
213 cd04136 Rap_like Rap-like subf 99.5 2.8E-14 6E-19 139.5 11.5 154 211-399 2-162 (163)
214 cd01867 Rab8_Rab10_Rab13_like 99.5 3.5E-14 7.5E-19 140.2 12.2 155 211-399 4-164 (167)
215 cd04177 RSR1 RSR1 subgroup. R 99.5 2.7E-14 5.8E-19 141.2 11.1 156 211-400 2-164 (168)
216 cd04156 ARLTS1 ARLTS1 subfamil 99.5 3.2E-14 6.9E-19 138.9 11.3 153 212-397 1-159 (160)
217 cd04107 Rab32_Rab38 Rab38/Rab3 99.5 5.7E-14 1.2E-18 143.4 13.5 157 212-401 2-169 (201)
218 cd00876 Ras Ras family. The R 99.5 3.7E-14 7.9E-19 137.8 11.3 153 212-399 1-160 (160)
219 cd01893 Miro1 Miro1 subfamily. 99.5 5.1E-14 1.1E-18 139.0 12.3 157 212-399 2-163 (166)
220 TIGR02528 EutP ethanolamine ut 99.5 2.6E-14 5.7E-19 137.0 9.8 136 212-396 2-141 (142)
221 smart00177 ARF ARF-like small 99.5 5.2E-14 1.1E-18 140.5 12.2 155 211-399 14-173 (175)
222 cd04112 Rab26 Rab26 subfamily. 99.5 5.8E-14 1.3E-18 142.1 12.5 158 212-402 2-165 (191)
223 cd04122 Rab14 Rab14 subfamily. 99.5 6.5E-14 1.4E-18 138.1 12.3 157 211-399 3-163 (166)
224 cd04142 RRP22 RRP22 subfamily. 99.5 5.5E-14 1.2E-18 143.4 12.1 157 212-401 2-175 (198)
225 cd04116 Rab9 Rab9 subfamily. 99.5 6.6E-14 1.4E-18 138.3 12.3 154 211-398 6-169 (170)
226 cd04091 mtEFG1_II_like mtEFG1_ 99.5 5.4E-14 1.2E-18 122.4 10.0 81 410-496 1-81 (81)
227 cd04144 Ras2 Ras2 subfamily. 99.5 6E-14 1.3E-18 141.9 11.9 156 212-402 1-165 (190)
228 cd04162 Arl9_Arfrp2_like Arl9/ 99.5 6.4E-14 1.4E-18 138.4 11.7 159 213-397 2-163 (164)
229 PRK12297 obgE GTPase CgtA; Rev 99.5 7.5E-14 1.6E-18 156.9 13.7 153 211-401 159-328 (424)
230 cd04137 RheB Rheb (Ras Homolog 99.5 6.9E-14 1.5E-18 139.7 11.9 155 211-400 2-163 (180)
231 cd04120 Rab12 Rab12 subfamily. 99.5 1.2E-13 2.6E-18 141.2 13.8 155 212-399 2-162 (202)
232 cd04176 Rap2 Rap2 subgroup. T 99.5 7E-14 1.5E-18 137.1 11.6 154 211-399 2-162 (163)
233 cd04115 Rab33B_Rab33A Rab33B/R 99.5 1.2E-13 2.7E-18 136.8 13.3 158 211-399 3-168 (170)
234 cd04123 Rab21 Rab21 subfamily. 99.5 1E-13 2.2E-18 134.9 12.4 154 212-399 2-161 (162)
235 PLN00223 ADP-ribosylation fact 99.5 8.9E-14 1.9E-18 139.8 12.1 155 211-400 18-178 (181)
236 cd04135 Tc10 TC10 subfamily. 99.5 6.5E-14 1.4E-18 138.8 10.9 155 212-399 2-173 (174)
237 cd04127 Rab27A Rab27a subfamil 99.5 1.1E-13 2.4E-18 138.1 12.4 155 211-399 5-176 (180)
238 KOG1423|consensus 99.5 5.2E-13 1.1E-17 138.7 17.1 165 211-402 73-273 (379)
239 cd00157 Rho Rho (Ras homology) 99.5 8.9E-14 1.9E-18 137.0 11.0 155 212-397 2-170 (171)
240 cd03699 lepA_II lepA_II: This 99.5 9.3E-14 2E-18 122.3 9.9 82 410-496 1-86 (86)
241 cd04146 RERG_RasL11_like RERG/ 99.5 6.7E-14 1.4E-18 137.7 10.0 156 212-399 1-163 (165)
242 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.5 1E-13 2.3E-18 138.0 11.2 154 212-400 4-164 (172)
243 cd04118 Rab24 Rab24 subfamily. 99.5 1.5E-13 3.2E-18 139.0 12.4 156 212-399 2-165 (193)
244 PTZ00133 ADP-ribosylation fact 99.5 1.8E-13 3.9E-18 137.6 12.8 155 211-399 18-177 (182)
245 PF14492 EFG_II: Elongation Fa 99.5 6.8E-14 1.5E-18 119.7 8.1 74 508-591 1-75 (75)
246 cd04101 RabL4 RabL4 (Rab-like4 99.5 2.4E-13 5.2E-18 133.3 12.8 158 212-399 2-163 (164)
247 cd04110 Rab35 Rab35 subfamily. 99.5 2.1E-13 4.4E-18 139.2 12.8 156 211-400 7-167 (199)
248 TIGR00437 feoB ferrous iron tr 99.5 1.6E-13 3.5E-18 161.1 13.0 146 217-399 1-154 (591)
249 cd04109 Rab28 Rab28 subfamily. 99.5 2.8E-13 6E-18 139.9 13.2 156 212-401 2-167 (215)
250 cd04134 Rho3 Rho3 subfamily. 99.5 1.6E-13 3.5E-18 138.7 11.1 162 211-403 1-177 (189)
251 COG0218 Predicted GTPase [Gene 99.5 3.4E-13 7.3E-18 134.2 12.9 159 211-400 25-197 (200)
252 cd04108 Rab36_Rab34 Rab34/Rab3 99.5 2.4E-13 5.3E-18 135.1 11.9 156 212-400 2-165 (170)
253 cd04125 RabA_like RabA-like su 99.5 2.9E-13 6.2E-18 136.5 12.2 158 212-401 2-163 (188)
254 smart00174 RHO Rho (Ras homolo 99.5 2.3E-13 5E-18 134.8 11.2 154 213-399 1-171 (174)
255 cd04126 Rab20 Rab20 subfamily. 99.5 4.4E-13 9.6E-18 138.8 13.5 159 212-399 2-189 (220)
256 PLN03071 GTP-binding nuclear p 99.5 2.6E-13 5.6E-18 140.7 11.8 156 211-400 14-172 (219)
257 cd00882 Ras_like_GTPase Ras-li 99.5 1.6E-13 3.4E-18 129.9 9.1 148 215-396 1-156 (157)
258 cd04121 Rab40 Rab40 subfamily. 99.5 5E-13 1.1E-17 135.3 13.2 155 211-399 7-166 (189)
259 PLN03110 Rab GTPase; Provision 99.5 3.7E-13 8.1E-18 139.2 12.5 157 211-401 13-175 (216)
260 cd01882 BMS1 Bms1. Bms1 is an 99.5 6.4E-13 1.4E-17 138.3 14.1 179 210-419 39-220 (225)
261 cd04143 Rhes_like Rhes_like su 99.5 4.9E-13 1.1E-17 141.0 13.0 158 212-403 2-174 (247)
262 cd04128 Spg1 Spg1p. Spg1p (se 99.4 4.2E-13 9.1E-18 135.0 11.7 155 212-400 2-166 (182)
263 cd01871 Rac1_like Rac1-like su 99.4 4.3E-13 9.4E-18 133.9 11.5 156 212-398 3-173 (174)
264 cd01874 Cdc42 Cdc42 subfamily. 99.4 6.3E-13 1.4E-17 132.8 12.6 154 212-397 3-172 (175)
265 smart00176 RAN Ran (Ras-relate 99.4 5.4E-13 1.2E-17 136.3 12.3 151 216-400 1-154 (200)
266 PF10662 PduV-EutP: Ethanolami 99.4 3E-13 6.4E-18 129.0 9.6 137 211-396 2-142 (143)
267 cd01876 YihA_EngB The YihA (En 99.4 1E-12 2.2E-17 128.2 13.4 154 213-398 2-169 (170)
268 cd04132 Rho4_like Rho4-like su 99.4 6.1E-13 1.3E-17 133.8 12.1 156 212-400 2-167 (187)
269 PF00025 Arf: ADP-ribosylation 99.4 5.6E-13 1.2E-17 133.3 11.3 156 210-398 14-174 (175)
270 cd04130 Wrch_1 Wrch-1 subfamil 99.4 5.4E-13 1.2E-17 132.6 10.6 152 212-396 2-170 (173)
271 cd01875 RhoG RhoG subfamily. 99.4 9.9E-13 2.1E-17 133.3 12.4 163 211-403 4-180 (191)
272 cd01870 RhoA_like RhoA-like su 99.4 5.9E-13 1.3E-17 132.0 10.3 154 211-399 2-174 (175)
273 PLN03108 Rab family protein; P 99.4 1.2E-12 2.5E-17 134.9 12.6 155 211-399 7-167 (210)
274 cd04133 Rop_like Rop subfamily 99.4 9.1E-13 2E-17 131.9 11.3 157 212-400 3-173 (176)
275 cd04117 Rab15 Rab15 subfamily. 99.4 2.5E-12 5.5E-17 126.4 13.7 153 212-398 2-160 (161)
276 cd01892 Miro2 Miro2 subfamily. 99.4 1.3E-12 2.9E-17 129.6 11.7 158 211-400 5-166 (169)
277 KOG0073|consensus 99.4 3.6E-12 7.9E-17 121.2 13.7 144 210-376 16-164 (185)
278 PF01926 MMR_HSR1: 50S ribosom 99.4 5.3E-13 1.1E-17 123.9 8.1 107 212-334 1-116 (116)
279 cd04111 Rab39 Rab39 subfamily. 99.4 1.4E-12 3E-17 134.5 11.9 156 211-400 3-166 (211)
280 COG1084 Predicted GTPase [Gene 99.4 3.8E-12 8.3E-17 134.4 13.8 171 179-376 137-322 (346)
281 cd01896 DRG The developmentall 99.4 2.5E-12 5.5E-17 134.5 12.3 82 212-309 2-90 (233)
282 COG0370 FeoB Fe2+ transport sy 99.4 1.4E-12 3.1E-17 149.5 10.8 154 212-403 5-167 (653)
283 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.4 3E-12 6.5E-17 128.9 11.8 155 211-397 6-177 (182)
284 cd04131 Rnd Rnd subfamily. Th 99.4 3.2E-12 7E-17 128.1 11.5 152 212-397 3-173 (178)
285 cd04148 RGK RGK subfamily. Th 99.4 3E-12 6.5E-17 132.9 11.5 157 212-401 2-164 (221)
286 COG2262 HflX GTPases [General 99.4 6.4E-12 1.4E-16 136.5 13.9 152 211-401 193-357 (411)
287 KOG0092|consensus 99.4 3.8E-12 8.3E-17 124.6 10.9 162 211-404 6-171 (200)
288 cd04104 p47_IIGP_like p47 (47- 99.3 3.6E-12 7.7E-17 129.9 10.9 167 212-403 3-187 (197)
289 KOG1489|consensus 99.3 5E-12 1.1E-16 132.3 11.7 151 211-397 197-364 (366)
290 KOG0094|consensus 99.3 1.1E-11 2.4E-16 121.3 12.9 162 211-404 23-189 (221)
291 cd03700 eEF2_snRNP_like_II EF2 99.3 4.6E-12 1E-16 113.2 9.5 86 410-495 1-92 (93)
292 cd04090 eEF2_II_snRNP Loc2 eEF 99.3 8.1E-12 1.7E-16 111.9 10.6 85 410-494 1-91 (94)
293 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.3 8.5E-12 1.8E-16 130.2 12.3 157 211-398 14-186 (232)
294 cd04103 Centaurin_gamma Centau 99.3 9.5E-12 2E-16 122.3 11.6 149 212-398 2-157 (158)
295 KOG0075|consensus 99.3 1.5E-11 3.2E-16 114.8 10.8 161 207-401 17-183 (186)
296 KOG0084|consensus 99.3 2.5E-11 5.5E-16 119.3 11.7 155 211-399 10-171 (205)
297 PRK09866 hypothetical protein; 99.3 5.9E-11 1.3E-15 135.7 16.3 114 273-398 230-351 (741)
298 cd04129 Rho2 Rho2 subfamily. 99.3 1.6E-11 3.4E-16 123.9 10.6 157 211-400 2-173 (187)
299 cd04105 SR_beta Signal recogni 99.3 1.5E-11 3.2E-16 126.0 10.4 113 212-343 2-127 (203)
300 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 2.1E-11 4.6E-16 124.1 10.0 164 211-401 1-185 (196)
301 PTZ00132 GTP-binding nuclear p 99.2 5.3E-11 1.2E-15 122.8 12.8 155 211-399 10-167 (215)
302 COG3596 Predicted GTPase [Gene 99.2 1.8E-11 4E-16 126.5 9.2 165 211-402 40-224 (296)
303 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.2 5E-11 1.1E-15 123.7 11.6 159 212-398 3-174 (222)
304 PF00071 Ras: Ras family; Int 99.2 7.1E-11 1.5E-15 115.5 12.0 156 212-399 1-160 (162)
305 KOG0078|consensus 99.2 1.8E-10 3.9E-15 115.0 12.8 156 211-400 13-174 (207)
306 cd01873 RhoBTB RhoBTB subfamil 99.2 1.2E-10 2.7E-15 118.4 11.5 107 272-397 65-193 (195)
307 PRK09435 membrane ATPase/prote 99.2 1.6E-10 3.6E-15 126.0 12.6 173 211-400 57-260 (332)
308 KOG0394|consensus 99.2 8.2E-11 1.8E-15 114.2 8.5 156 211-400 10-178 (210)
309 COG1163 DRG Predicted GTPase [ 99.2 1.1E-10 2.4E-15 122.8 10.2 83 211-309 64-153 (365)
310 cd01850 CDC_Septin CDC/Septin. 99.1 7.5E-10 1.6E-14 118.7 16.2 122 211-339 5-157 (276)
311 KOG0052|consensus 99.1 1.6E-10 3.5E-15 125.0 11.0 227 210-500 7-262 (391)
312 cd04102 RabL3 RabL3 (Rab-like3 99.1 2.6E-10 5.7E-15 116.6 12.0 168 212-397 2-197 (202)
313 KOG0080|consensus 99.1 1.3E-10 2.8E-15 110.1 8.6 160 211-402 12-177 (209)
314 KOG0095|consensus 99.1 4.3E-10 9.2E-15 105.1 10.8 157 211-399 8-168 (213)
315 PF03308 ArgK: ArgK protein; 99.1 5.9E-10 1.3E-14 115.5 11.6 168 211-399 30-229 (266)
316 KOG0093|consensus 99.1 6.2E-10 1.3E-14 104.0 10.5 164 205-400 16-183 (193)
317 cd03693 EF1_alpha_II EF1_alpha 99.1 5.4E-10 1.2E-14 99.4 9.8 85 407-499 2-90 (91)
318 cd01899 Ygr210 Ygr210 subfamil 99.1 8.1E-10 1.7E-14 120.4 12.9 80 213-308 1-111 (318)
319 PF08477 Miro: Miro-like prote 99.1 9.9E-11 2.1E-15 108.6 4.1 113 212-336 1-119 (119)
320 cd01853 Toc34_like Toc34-like 99.1 3E-09 6.5E-14 112.2 15.5 115 210-339 31-163 (249)
321 cd03698 eRF3_II_like eRF3_II_l 99.1 9.8E-10 2.1E-14 96.1 9.8 79 409-496 1-83 (83)
322 COG1703 ArgK Putative periplas 99.0 2.7E-09 5.8E-14 111.9 13.9 171 211-400 52-254 (323)
323 COG1100 GTPase SAR1 and relate 99.0 1.2E-09 2.6E-14 112.5 11.4 164 211-400 6-185 (219)
324 KOG0070|consensus 99.0 1.2E-09 2.6E-14 106.9 10.5 157 210-400 17-178 (181)
325 KOG0098|consensus 99.0 7.8E-10 1.7E-14 107.7 9.1 154 211-396 7-164 (216)
326 PF09439 SRPRB: Signal recogni 99.0 3.1E-10 6.6E-15 113.1 6.1 123 211-354 4-142 (181)
327 COG0536 Obg Predicted GTPase [ 99.0 1.6E-09 3.5E-14 115.2 11.2 159 211-402 160-335 (369)
328 PTZ00099 rab6; Provisional 99.0 2E-09 4.4E-14 107.7 11.3 114 272-403 28-145 (176)
329 KOG0076|consensus 99.0 8.1E-10 1.7E-14 106.4 7.8 166 211-402 18-189 (197)
330 TIGR02836 spore_IV_A stage IV 99.0 1.5E-09 3.2E-14 118.7 10.5 153 212-375 19-220 (492)
331 KOG0079|consensus 99.0 2E-09 4.3E-14 100.8 9.5 154 212-399 10-168 (198)
332 KOG0087|consensus 99.0 1.5E-09 3.1E-14 108.1 8.9 150 205-376 9-162 (222)
333 TIGR00750 lao LAO/AO transport 99.0 4.6E-09 9.9E-14 114.2 13.5 113 271-400 125-238 (300)
334 PLN00023 GTP-binding protein; 99.0 2.9E-09 6.3E-14 114.9 11.3 116 211-340 22-166 (334)
335 PF03144 GTP_EFTU_D2: Elongati 99.0 5.2E-10 1.1E-14 95.3 4.1 72 424-495 1-74 (74)
336 PRK13768 GTPase; Provisional 98.9 1.7E-09 3.6E-14 114.7 7.7 121 272-402 96-249 (253)
337 KOG0090|consensus 98.9 1.1E-08 2.3E-13 102.1 11.9 118 211-347 39-167 (238)
338 KOG0086|consensus 98.9 6.5E-09 1.4E-13 97.7 9.2 145 211-377 10-158 (214)
339 cd01291 PseudoU_synth PseudoU_ 98.9 5.2E-09 1.1E-13 92.3 8.0 50 15-79 1-51 (87)
340 PRK09602 translation-associate 98.9 1.2E-08 2.6E-13 114.5 12.7 80 212-307 3-113 (396)
341 KOG0395|consensus 98.8 1.6E-08 3.6E-13 102.8 11.3 158 211-401 4-166 (196)
342 cd04089 eRF3_II eRF3_II: domai 98.8 1.6E-08 3.4E-13 88.2 9.6 78 409-496 1-82 (82)
343 COG4917 EutP Ethanolamine util 98.8 6.1E-09 1.3E-13 95.3 7.0 138 211-397 2-143 (148)
344 cd03697 EFTU_II EFTU_II: Elong 98.8 1.7E-08 3.7E-13 89.0 9.5 82 410-497 1-86 (87)
345 cd03695 CysN_NodQ_II CysN_NodQ 98.8 2.3E-08 5E-13 87.0 9.9 79 410-496 1-81 (81)
346 cd03694 GTPBP_II Domain II of 98.8 1.9E-08 4.1E-13 88.7 9.2 83 410-496 1-87 (87)
347 KOG1532|consensus 98.8 1E-08 2.2E-13 105.5 7.5 180 211-400 20-264 (366)
348 KOG0071|consensus 98.8 9.4E-08 2E-12 89.0 12.5 156 210-399 17-177 (180)
349 KOG0083|consensus 98.8 1.2E-08 2.6E-13 93.8 6.5 154 215-399 2-159 (192)
350 KOG0088|consensus 98.8 5.3E-09 1.2E-13 98.9 4.2 158 209-398 12-173 (218)
351 TIGR00073 hypB hydrogenase acc 98.8 5E-08 1.1E-12 100.3 11.4 165 211-399 23-206 (207)
352 cd03696 selB_II selB_II: this 98.7 4.1E-08 9E-13 85.8 8.9 79 410-496 1-83 (83)
353 smart00053 DYNc Dynamin, GTPas 98.7 7.8E-08 1.7E-12 100.6 12.3 68 273-340 125-207 (240)
354 cd01342 Translation_Factor_II_ 98.7 7.7E-08 1.7E-12 82.1 9.3 80 410-495 1-82 (83)
355 KOG0072|consensus 98.7 7.2E-08 1.6E-12 90.2 9.1 157 209-401 17-180 (182)
356 PF05049 IIGP: Interferon-indu 98.7 5.6E-08 1.2E-12 107.1 9.8 170 211-404 36-222 (376)
357 KOG0081|consensus 98.7 4.5E-08 9.8E-13 92.7 7.7 115 273-401 67-186 (219)
358 PF00350 Dynamin_N: Dynamin fa 98.7 3.4E-08 7.3E-13 97.4 6.5 64 272-335 100-168 (168)
359 PRK09601 GTP-binding protein Y 98.7 1.5E-07 3.3E-12 103.6 11.9 81 212-308 4-108 (364)
360 PF04670 Gtr1_RagA: Gtr1/RagA 98.6 2.5E-07 5.5E-12 96.2 12.9 114 212-340 1-126 (232)
361 TIGR00991 3a0901s02IAP34 GTP-b 98.6 2.2E-07 4.8E-12 99.9 12.3 113 211-338 39-166 (313)
362 KOG0074|consensus 98.6 1.1E-07 2.3E-12 88.8 8.0 144 209-376 16-165 (185)
363 PF03029 ATP_bind_1: Conserved 98.6 6.2E-09 1.4E-13 109.1 -0.5 114 274-397 92-234 (238)
364 KOG0091|consensus 98.6 2.9E-07 6.3E-12 87.9 10.3 156 211-399 9-172 (213)
365 KOG0077|consensus 98.6 1.6E-07 3.5E-12 90.0 7.8 112 211-341 21-137 (193)
366 TIGR00101 ureG urease accessor 98.6 2.1E-07 4.5E-12 95.1 9.2 105 272-399 91-195 (199)
367 KOG0410|consensus 98.5 1.9E-07 4.1E-12 98.5 8.0 146 211-401 179-342 (410)
368 KOG0097|consensus 98.5 4.2E-07 9.1E-12 84.4 8.9 145 212-378 13-161 (215)
369 COG5192 BMS1 GTP-binding prote 98.5 1.7E-06 3.7E-11 96.3 14.9 140 212-375 71-211 (1077)
370 PRK10463 hydrogenase nickel in 98.5 5.2E-07 1.1E-11 96.4 10.4 161 212-397 106-286 (290)
371 KOG2486|consensus 98.5 2.6E-07 5.7E-12 95.8 7.6 158 211-395 137-311 (320)
372 KOG1490|consensus 98.4 8.8E-07 1.9E-11 98.2 10.4 149 211-380 169-331 (620)
373 cd01859 MJ1464 MJ1464. This f 98.4 8.5E-07 1.8E-11 86.7 8.7 94 288-401 4-97 (156)
374 cd01900 YchF YchF subfamily. 98.4 3.2E-07 6.8E-12 97.9 6.0 80 213-308 1-104 (274)
375 COG0378 HypB Ni2+-binding GTPa 98.4 1.2E-06 2.6E-11 87.1 8.8 159 211-398 14-199 (202)
376 PTZ00258 GTP-binding protein; 98.3 6.6E-07 1.4E-11 99.7 6.4 81 211-307 22-126 (390)
377 PF04548 AIG1: AIG1 family; I 98.3 1.4E-06 3E-11 90.0 8.5 114 212-340 2-131 (212)
378 PF00735 Septin: Septin; Inte 98.3 1.8E-06 3.9E-11 92.8 9.5 122 211-339 5-156 (281)
379 TIGR00993 3a0901s04IAP86 chlor 98.3 6.3E-06 1.4E-10 95.5 13.0 118 207-339 115-250 (763)
380 KOG4252|consensus 98.2 2.3E-07 5.1E-12 89.7 0.1 155 211-397 21-178 (246)
381 KOG1486|consensus 98.2 6.6E-06 1.4E-10 84.1 9.1 84 210-309 62-152 (364)
382 cd03692 mtIF2_IVc mtIF2_IVc: t 98.1 1.4E-05 3.1E-10 69.9 9.6 77 412-494 3-82 (84)
383 COG0012 Predicted GTPase, prob 98.1 1.3E-05 2.8E-10 87.4 10.9 88 212-308 4-109 (372)
384 COG5019 CDC3 Septin family pro 98.1 1.4E-05 3E-10 86.6 10.2 125 208-339 21-176 (373)
385 cd01858 NGP_1 NGP-1. Autoanti 98.1 1.3E-05 2.9E-10 78.4 9.1 91 290-399 2-94 (157)
386 cd03688 eIF2_gamma_II eIF2_gam 98.1 1.4E-05 3.1E-10 72.5 8.3 87 406-496 2-111 (113)
387 cd01856 YlqF YlqF. Proteins o 98.1 1.1E-05 2.4E-10 80.3 8.5 100 280-401 2-102 (171)
388 cd01855 YqeH YqeH. YqeH is an 98.1 1E-05 2.2E-10 81.9 8.1 106 281-400 19-125 (190)
389 TIGR01213 conserved hypothetic 98.1 2.5E-06 5.5E-11 93.7 3.6 112 52-198 254-379 (388)
390 KOG1547|consensus 98.0 2.3E-05 5.1E-10 79.7 10.0 140 209-357 45-217 (336)
391 KOG1707|consensus 98.0 6.9E-06 1.5E-10 93.0 6.7 145 211-376 10-161 (625)
392 KOG0448|consensus 98.0 3.8E-05 8.3E-10 88.5 12.6 161 211-375 110-311 (749)
393 TIGR03596 GTPase_YlqF ribosome 98.0 1.4E-05 3.1E-10 85.8 8.9 100 280-401 4-104 (276)
394 KOG2655|consensus 98.0 4.3E-05 9.3E-10 83.5 12.3 123 210-340 21-173 (366)
395 KOG1954|consensus 98.0 3E-05 6.4E-10 83.3 10.2 133 207-339 55-225 (532)
396 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 2.5E-05 5.4E-10 75.2 9.0 99 288-396 3-104 (141)
397 KOG3883|consensus 97.9 6.9E-05 1.5E-09 71.2 10.5 162 211-405 10-180 (198)
398 PRK14722 flhF flagellar biosyn 97.9 1.9E-05 4.1E-10 87.7 7.9 152 211-374 138-318 (374)
399 KOG0393|consensus 97.9 4.4E-05 9.5E-10 77.0 9.1 154 211-399 5-178 (198)
400 KOG1673|consensus 97.9 5E-05 1.1E-09 72.3 8.7 164 209-399 19-185 (205)
401 KOG3886|consensus 97.9 2.1E-05 4.6E-10 79.6 6.6 120 211-345 5-136 (295)
402 PRK09563 rbgA GTPase YlqF; Rev 97.9 2.8E-05 6.2E-10 84.1 8.0 102 279-402 6-108 (287)
403 cd01858 NGP_1 NGP-1. Autoanti 97.9 1E-05 2.2E-10 79.4 3.8 55 211-283 103-157 (157)
404 PRK10416 signal recognition pa 97.9 7.2E-05 1.6E-09 81.9 10.8 150 211-378 115-298 (318)
405 cd01849 YlqF_related_GTPase Yl 97.8 7.8E-05 1.7E-09 72.9 8.8 83 298-399 1-84 (155)
406 KOG1487|consensus 97.8 2E-05 4.3E-10 81.0 4.5 82 212-309 61-149 (358)
407 cd04178 Nucleostemin_like Nucl 97.8 1.5E-05 3.4E-10 79.5 3.5 55 211-283 118-172 (172)
408 cd01849 YlqF_related_GTPase Yl 97.8 3.3E-05 7.1E-10 75.6 5.6 56 210-283 100-155 (155)
409 TIGR01425 SRP54_euk signal rec 97.7 0.00011 2.4E-09 83.0 9.9 124 211-338 101-252 (429)
410 cd03115 SRP The signal recogni 97.7 0.00013 2.8E-09 72.6 9.3 67 271-339 81-153 (173)
411 cd01855 YqeH YqeH. YqeH is an 97.7 4.3E-05 9.3E-10 77.3 5.7 86 171-283 105-190 (190)
412 TIGR03596 GTPase_YlqF ribosome 97.7 7.9E-05 1.7E-09 80.2 7.8 91 171-283 83-173 (276)
413 KOG0096|consensus 97.7 9.9E-05 2.2E-09 72.8 7.1 144 211-378 11-157 (216)
414 cd03114 ArgK-like The function 97.7 9.8E-05 2.1E-09 71.9 7.0 59 271-336 90-148 (148)
415 PRK14974 cell division protein 97.6 0.00027 5.9E-09 77.8 10.8 89 271-378 221-318 (336)
416 PRK12727 flagellar biosynthesi 97.6 0.00042 9.2E-09 79.6 12.4 149 211-373 351-520 (559)
417 PRK14554 putative pseudouridyl 97.6 3.3E-05 7.1E-10 86.4 2.8 114 51-197 286-411 (422)
418 PRK09563 rbgA GTPase YlqF; Rev 97.6 0.00011 2.3E-09 79.6 6.6 57 211-285 122-178 (287)
419 TIGR00064 ftsY signal recognit 97.6 0.00039 8.6E-09 74.5 10.7 147 211-376 73-254 (272)
420 cd01857 HSR1_MMR1 HSR1/MMR1. 97.6 4.3E-05 9.3E-10 73.5 3.0 55 212-284 85-139 (141)
421 PF03193 DUF258: Protein of un 97.6 1.8E-05 4E-10 77.6 0.3 66 211-287 36-101 (161)
422 PRK12289 GTPase RsgA; Reviewed 97.6 0.00025 5.5E-09 78.6 9.1 84 293-396 86-171 (352)
423 TIGR00157 ribosome small subun 97.5 0.00014 3.1E-09 76.7 6.8 85 293-396 33-119 (245)
424 cd01856 YlqF YlqF. Proteins o 97.5 0.00015 3.4E-09 72.0 6.5 90 171-283 81-170 (171)
425 TIGR03597 GTPase_YqeH ribosome 97.5 9.3E-05 2E-09 82.6 5.0 63 211-286 155-217 (360)
426 cd03702 IF2_mtIF2_II This fami 97.5 0.00044 9.5E-09 61.9 7.7 76 411-495 2-78 (95)
427 PRK00098 GTPase RsgA; Reviewed 97.5 0.00034 7.4E-09 76.1 8.5 84 293-395 77-162 (298)
428 PRK12288 GTPase RsgA; Reviewed 97.4 0.00011 2.3E-09 81.5 3.8 65 212-287 207-271 (347)
429 TIGR00092 GTP-binding protein 97.4 0.00022 4.8E-09 78.9 6.1 81 212-308 4-109 (368)
430 PF08068 DKCLD: DKCLD (NUC011) 97.4 9E-05 2E-09 59.0 2.1 18 10-27 42-59 (59)
431 cd01854 YjeQ_engC YjeQ/EngC. 97.4 0.00034 7.4E-09 75.7 7.3 83 293-395 75-159 (287)
432 cd03112 CobW_like The function 97.4 0.00061 1.3E-08 67.0 8.2 63 272-337 86-158 (158)
433 PF00448 SRP54: SRP54-type pro 97.3 0.00019 4.1E-09 73.2 4.4 146 212-373 3-176 (196)
434 TIGR03597 GTPase_YqeH ribosome 97.3 0.00066 1.4E-08 75.8 9.1 99 284-398 51-151 (360)
435 PRK01889 GTPase RsgA; Reviewed 97.3 0.00072 1.6E-08 75.4 9.0 82 294-395 110-192 (356)
436 PRK12289 GTPase RsgA; Reviewed 97.3 0.00013 2.8E-09 80.9 2.7 65 212-287 174-238 (352)
437 TIGR00157 ribosome small subun 97.3 0.0003 6.5E-09 74.3 5.2 63 212-286 122-184 (245)
438 COG1162 Predicted GTPases [Gen 97.3 0.00016 3.4E-09 77.4 3.0 65 212-287 166-230 (301)
439 COG1161 Predicted GTPases [Gen 97.3 0.00033 7.1E-09 77.0 5.5 56 211-284 133-188 (322)
440 cd01859 MJ1464 MJ1464. This f 97.2 0.0004 8.6E-09 67.8 5.3 81 171-283 76-156 (156)
441 PRK13796 GTPase YqeH; Provisio 97.2 0.00041 8.9E-09 77.6 5.8 61 211-284 161-221 (365)
442 cd00066 G-alpha G protein alph 97.2 0.0011 2.5E-08 72.6 9.1 130 258-398 146-309 (317)
443 PRK12288 GTPase RsgA; Reviewed 97.2 0.0012 2.6E-08 73.3 9.0 88 293-397 117-205 (347)
444 cd02036 MinD Bacterial cell di 97.2 0.00094 2E-08 66.2 7.6 76 274-351 64-140 (179)
445 cd01851 GBP Guanylate-binding 97.2 0.00039 8.5E-09 72.4 5.0 88 211-308 8-103 (224)
446 KOG2485|consensus 97.2 0.00065 1.4E-08 72.3 6.5 77 211-297 144-221 (335)
447 PRK00771 signal recognition pa 97.2 0.0022 4.8E-08 73.1 10.9 177 178-380 70-273 (437)
448 cd03703 aeIF5B_II aeIF5B_II: T 97.1 0.0029 6.3E-08 57.9 9.5 83 411-495 2-93 (110)
449 smart00275 G_alpha G protein a 97.1 0.0022 4.7E-08 71.2 10.5 82 257-338 168-264 (342)
450 PF14578 GTP_EFTU_D4: Elongati 97.1 0.0034 7.3E-08 54.2 8.6 74 409-494 4-79 (81)
451 PRK05703 flhF flagellar biosyn 97.0 0.0044 9.4E-08 70.7 11.9 149 211-373 222-393 (424)
452 cd01854 YjeQ_engC YjeQ/EngC. 97.0 0.00046 1E-08 74.7 3.5 66 211-287 162-227 (287)
453 cd03701 IF2_IF5B_II IF2_IF5B_I 97.0 0.0029 6.3E-08 56.7 8.0 76 411-495 2-78 (95)
454 PRK11889 flhF flagellar biosyn 97.0 0.0015 3.3E-08 72.5 7.4 146 211-372 242-412 (436)
455 cd03110 Fer4_NifH_child This p 96.9 0.0034 7.4E-08 62.7 8.9 67 271-339 91-157 (179)
456 KOG1491|consensus 96.9 0.0012 2.6E-08 70.9 5.5 89 204-308 14-126 (391)
457 PRK12726 flagellar biosynthesi 96.9 0.0016 3.5E-08 72.1 6.6 146 211-374 207-379 (407)
458 KOG4423|consensus 96.9 0.00011 2.4E-09 72.1 -2.4 157 211-399 26-193 (229)
459 PF09547 Spore_IV_A: Stage IV 96.8 0.0036 7.7E-08 69.5 8.3 152 212-374 19-219 (492)
460 KOG3905|consensus 96.8 0.0048 1E-07 65.7 8.7 59 324-399 221-289 (473)
461 cd02553 PseudoU_synth_RsuA Pse 96.8 0.0012 2.7E-08 65.5 4.1 68 12-79 2-78 (167)
462 PRK13796 GTPase YqeH; Provisio 96.8 0.0054 1.2E-07 68.7 9.6 97 285-398 58-157 (365)
463 cd02038 FleN-like FleN is a me 96.8 0.003 6.6E-08 60.6 6.6 103 216-338 6-110 (139)
464 PRK10867 signal recognition pa 96.7 0.0038 8.2E-08 71.0 8.3 86 271-373 182-276 (433)
465 PRK00098 GTPase RsgA; Reviewed 96.7 0.00099 2.1E-08 72.5 2.9 64 211-285 165-228 (298)
466 PRK11537 putative GTP-binding 96.7 0.0054 1.2E-07 67.3 8.5 138 213-357 7-177 (318)
467 PRK14721 flhF flagellar biosyn 96.7 0.0049 1.1E-07 69.8 8.4 169 211-397 192-383 (420)
468 PRK10475 23S rRNA pseudouridin 96.6 0.0044 9.4E-08 67.0 7.5 136 11-210 68-214 (290)
469 TIGR00959 ffh signal recogniti 96.6 0.0059 1.3E-07 69.5 8.2 63 271-338 181-252 (428)
470 PF05783 DLIC: Dynein light in 96.5 0.014 3.1E-07 67.1 11.0 59 324-399 195-263 (472)
471 PRK06731 flhF flagellar biosyn 96.5 0.0086 1.9E-07 64.1 8.6 146 211-372 76-246 (270)
472 TIGR01621 RluA-like pseudourid 96.5 0.003 6.5E-08 65.5 4.9 71 9-79 8-88 (217)
473 PRK10158 23S rRNA/tRNA pseudou 96.5 0.0029 6.3E-08 65.7 4.8 71 9-82 20-103 (219)
474 cd02558 PSRA_1 PSRA_1: Pseudou 96.4 0.004 8.6E-08 65.9 5.5 70 10-79 46-127 (246)
475 cd02557 PseudoU_synth_ScRIB2 P 96.4 0.004 8.8E-08 64.4 5.4 71 9-79 22-104 (213)
476 PRK06995 flhF flagellar biosyn 96.4 0.01 2.2E-07 68.3 8.9 169 212-398 258-449 (484)
477 COG0523 Putative GTPases (G3E 96.3 0.023 4.9E-07 62.4 10.4 90 272-372 84-184 (323)
478 PRK14723 flhF flagellar biosyn 96.3 0.0049 1.1E-07 74.1 5.7 169 211-397 186-380 (767)
479 PRK12724 flagellar biosynthesi 96.3 0.0083 1.8E-07 67.6 7.1 148 212-374 225-396 (432)
480 COG1162 Predicted GTPases [Gen 96.2 0.016 3.5E-07 62.2 8.7 82 296-395 79-162 (301)
481 PF02492 cobW: CobW/HypB/UreG, 96.2 0.0068 1.5E-07 60.7 5.5 84 272-358 84-172 (178)
482 COG1419 FlhF Flagellar GTP-bin 96.1 0.0087 1.9E-07 66.6 6.2 146 211-372 204-373 (407)
483 cd02563 PseudoU_synth_TruC tRN 96.1 0.007 1.5E-07 63.0 5.1 72 9-82 7-92 (223)
484 KOG3887|consensus 96.1 0.014 3.1E-07 59.9 7.0 134 211-359 28-174 (347)
485 cd03111 CpaE_like This protein 96.0 0.013 2.7E-07 53.6 5.8 59 274-334 44-106 (106)
486 PRK12723 flagellar biosynthesi 96.0 0.019 4.1E-07 64.6 8.3 148 211-372 175-347 (388)
487 PRK10700 23S rRNA pseudouridyl 95.9 0.018 3.8E-07 62.4 7.2 66 11-79 68-145 (289)
488 cd02566 PseudoU_synth_RluE Pse 95.9 0.0045 9.7E-08 61.6 2.4 66 12-79 1-75 (168)
489 TIGR02475 CobW cobalamin biosy 95.8 0.031 6.7E-07 62.0 8.8 80 273-355 93-200 (341)
490 cd04178 Nucleostemin_like Nucl 95.8 0.025 5.4E-07 56.5 7.2 42 298-339 1-44 (172)
491 cd02550 PseudoU_synth_Rsu_Rlu_ 95.6 0.011 2.3E-07 58.0 3.6 68 12-81 1-78 (154)
492 COG0564 RluA Pseudouridylate s 95.6 0.018 3.9E-07 62.3 5.7 73 10-83 85-171 (289)
493 cd02042 ParA ParA and ParB of 95.5 0.022 4.8E-07 51.3 5.1 80 213-317 2-82 (104)
494 KOG0780|consensus 95.3 0.069 1.5E-06 58.6 9.0 124 212-338 103-253 (483)
495 cd01983 Fer4_NifH The Fer4_Nif 95.3 0.027 5.9E-07 49.1 5.1 76 213-316 2-78 (99)
496 TIGR00005 rluA_subfam pseudour 95.3 0.018 3.9E-07 62.6 4.7 70 10-79 79-164 (299)
497 PRK13695 putative NTPase; Prov 95.3 0.016 3.5E-07 57.7 3.8 39 295-335 95-136 (174)
498 PRK11112 tRNA pseudouridine sy 95.3 0.024 5.2E-07 60.4 5.2 70 9-79 8-91 (257)
499 KOG1424|consensus 95.2 0.0092 2E-07 67.4 2.0 60 211-288 315-376 (562)
500 KOG0447|consensus 95.2 0.3 6.6E-06 55.5 13.5 84 257-340 393-494 (980)
No 1
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-169 Score=1339.67 Aligned_cols=574 Identities=57% Similarity=0.970 Sum_probs=567.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
+||||++|++||||||+++||+++|.++..+.+.+++||++++|+||||||.++++.+.|++++|||+|||||+||++|+
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEe
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYT 370 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~ 370 (793)
+|.++|+|++||+|||.+|++|||++++++|.+.|+++||||||+|++.+++++++++++++|.+++++++|++||++|+
T Consensus 86 ERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYA 165 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYA 165 (603)
T ss_pred hhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCC
Q psy1760 371 SALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDD 450 (793)
Q Consensus 371 SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g 450 (793)
||+.|++..++.....++.+|+++|++|+|+|..+.++||+|+|+.++|++|+|++.+|||++|++|+||.|.+... +|
T Consensus 166 S~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~-~g 244 (603)
T COG1217 166 SARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKS-DG 244 (603)
T ss_pred eccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcC-CC
Confidence 99999999888888889999999999999999999999999999999999999999999999999999999999987 78
Q ss_pred CCCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCeEeCCCCCCCCCCCccCCCceEEEEEecCCCCCCcCcc
Q psy1760 451 KPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGK 530 (793)
Q Consensus 451 ~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~g~e~~ 530 (793)
+....||++++.|.|++|.++++|.|||||+|+|++++.+|||||+++++.+||.+++++||++|.|.+|+|||+|+|||
T Consensus 245 ~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~~igdTi~d~~~~~aLp~l~iDePTlsMtf~vN~SPfAG~EGk 324 (603)
T COG1217 245 TTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTICDPDNPEALPALSVDEPTLSMTFSVNDSPFAGKEGK 324 (603)
T ss_pred cEEeeEEEeeeeccceeeeecccccccCEEEEcCcccccccccccCCCCccCCCCcccCCCceEEEEEecCCCCCCcCCc
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHhcCceEEEecCEEEEEEecCeeeCeEEEE
Q psy1760 531 FITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENL 610 (793)
Q Consensus 531 ~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrreg~e~~vs~P~V~yre~~g~llEP~~~~ 610 (793)
++|+|+|++||.||++.|++|+|+++++++. |.|+|||||||+||+|+|||||||++||+|+|+|||++|+++||||.+
T Consensus 325 ~vTSR~i~dRL~~El~~NValrVe~t~~pd~-f~VsGRGELhLsILiE~MRREGfEl~VsrP~Vi~keidG~~~EP~E~v 403 (603)
T COG1217 325 FVTSRQIRDRLNKELETNVALRVEETESPDA-FEVSGRGELHLSILIENMRREGFELQVSRPEVIIKEIDGVKCEPFEEV 403 (603)
T ss_pred eeeHHHHHHHHHHHhhhceeEEEeecCCCCe-EEEeccceeehHHHHHHhhhcceEEEecCceEEEEecCCcCcCcceeE
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEeccCCCcCCC
Q psy1760 611 FVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDL 690 (793)
Q Consensus 611 ~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i 690 (793)
+|+||+||+|.||+.|+.|||+|.+|.+.++||++++|.+|+|+|+||+++|+|+|+|+|++++.|++|+|+. |+|
T Consensus 404 ~iDv~ee~~G~Vie~lg~RKgem~~M~~~g~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~~----g~i 479 (603)
T COG1217 404 TIDVPEEHQGAVIEKLGERKGEMKDMAPDGKGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPVK----GEI 479 (603)
T ss_pred EecCchhhhhHHHHHHhhhhHhHhhcccCCCCeEEEEEEccCcceeccchheeeccccceeeeeccccccccc----ccc
Confidence 9999999999999999999999999999888999999999999999999999999999999999999999999 999
Q ss_pred CccccceeeeccchhHHHHHHhcccccccccccccceeccceEEEeeCCCCCeeecccccccccccccCCcccceeeccc
Q psy1760 691 GKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLINI 770 (793)
Q Consensus 691 ~~~~~g~~v~~~~g~~~~~~l~~~~~rg~~f~~~~~~vy~gmivg~~~~~~d~~~n~~~~k~~~~~r~~~~~~~~~~~~~ 770 (793)
..|.||+|||+++|++++|||++||+||.|||.||++||+|||||+|||+|||+|||||+||||||||||+|++++|+||
T Consensus 480 ~~R~nGvLiS~~~G~a~~yal~~lqdRG~~Fi~pG~~vYeGmiiG~hsR~nDL~VN~~k~K~LTN~Rasg~Dea~~L~~p 559 (603)
T COG1217 480 GGRHNGVLISNETGKAVAYALFNLQDRGKLFIEPGTKVYEGMIIGEHSRDNDLTVNVLKGKKLTNMRASGKDEAVTLTPP 559 (603)
T ss_pred cccccceEEEcCCCcchHhhhhhHHhcCceeecCCCceeeeeEEeeecCccCceeccccccccccccccCCccceEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhh--hccccceeEEEee
Q psy1760 771 IKIILIY--KYMNGDVAEWLKA 790 (793)
Q Consensus 771 ~~~~le~--~~~~~de~~e~~~ 790 (793)
+.||||+ |||+||||||||.
T Consensus 560 ~~mtLE~Ale~i~dDElvEVTP 581 (603)
T COG1217 560 IRMTLERALEFIADDELVEVTP 581 (603)
T ss_pred ccccHHHHHhhcCCCceEEecc
Confidence 9999999 9999999999995
No 2
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=3.2e-141 Score=1228.26 Aligned_cols=574 Identities=55% Similarity=0.932 Sum_probs=555.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
|||+|+||+|||||||+++|++.++.+...+.+..++||+.+.|++||+|+.++...+.|++++++|||||||.||.+++
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 79999999999999999999999999988888888999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEe
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYT 370 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~ 370 (793)
+++++++|++||||||.+|+++||+++|..+...++|+|+|+||+|+.+++++++.+++.++|..+++.++++.+|++++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~ 161 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYA 161 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEec
Confidence 99999999999999999999999999999999999999999999999988888999999999998888777888999999
Q ss_pred ecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCC
Q psy1760 371 SALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDD 450 (793)
Q Consensus 371 SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g 450 (793)
||++|++..+......|+.+||+.|.+++|+|..+.++||+++|+++++++|.|++++|||++|+|++||.|++.+. +|
T Consensus 162 SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~-~~ 240 (594)
T TIGR01394 162 SGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKR-DG 240 (594)
T ss_pred hhhcCcccccCcccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecC-CC
Confidence 99999977666556678999999999999999888899999999999999999999999999999999999999986 45
Q ss_pred CCCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCeEeCCCCCCCCCCCccCCCceEEEEEecCCCCCCcCcc
Q psy1760 451 KPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGK 530 (793)
Q Consensus 451 ~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~g~e~~ 530 (793)
+....+|++|+.+.|.++.++++|.|||||+|+|++++.+|||||+++++.++|++++++|+++|+|.+|++||+++|+|
T Consensus 241 ~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~~~e~k 320 (594)
T TIGR01394 241 TIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIADPEVPEALPTITVDEPTLSMTFSVNDSPLAGKEGK 320 (594)
T ss_pred ceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCcccCCCCEEeCCCccccCCCCCCCCCeEEEEEEecCCCcccccch
Confidence 44468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHhcCceEEEecCEEEEEEecCeeeCeEEEE
Q psy1760 531 FITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENL 610 (793)
Q Consensus 531 ~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrreg~e~~vs~P~V~yre~~g~llEP~~~~ 610 (793)
++|+++|++||.|++++||+|+|++++++++ |+|+|||||||+|++|+|||||||+++++|+|+|||++|++||||+++
T Consensus 321 ~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~-~~v~g~GelHL~il~e~lrreg~e~~~~~P~V~yrei~g~llEPi~~~ 399 (594)
T TIGR01394 321 KVTSRHIRDRLMRELETNVALRVEDTESADK-FEVSGRGELHLSILIETMRREGFELQVGRPQVIYKEIDGKKLEPIEEL 399 (594)
T ss_pred hhhHHHHHHHHHHhhccCCeEEEEEecCCCe-EEEEEECHHHHHHHHHHHhccCceEEEeCCEEEEEeCCCeEECCEEEE
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEeccCCCcCCC
Q psy1760 611 FVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDL 690 (793)
Q Consensus 611 ~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i 690 (793)
+|+||+||+|+||++|++|||+|++|++.++++++|+|.+|+|||+||+++|+|+|+|+|+|+++|+||+|++ |++
T Consensus 400 ~i~vp~e~~G~v~~~l~~RrG~~~~~~~~~~~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~----~~i 475 (594)
T TIGR01394 400 TIDVPEEHVGAVIEKLGKRKGEMVDMEPSGNGRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWK----GEI 475 (594)
T ss_pred EEEechHHHHHHHHHHHHhCCEEeccEECCCCEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEeccceeCC----CcC
Confidence 9999999999999999999999999998666799999999999999999999999999999999999999999 999
Q ss_pred CccccceeeeccchhHHHHHHhcccccccccccccceeccceEEEeeCCCCCeeecccccccccccccCCcccceeeccc
Q psy1760 691 GKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLINI 770 (793)
Q Consensus 691 ~~~~~g~~v~~~~g~~~~~~l~~~~~rg~~f~~~~~~vy~gmivg~~~~~~d~~~n~~~~k~~~~~r~~~~~~~~~~~~~ 770 (793)
..|.||+|||+++|++|+|||++||+||+|||.||++||+|||||||+|+|||+|||||+||||||||||+|++++|+||
T Consensus 476 ~~~~~g~~~~~~~g~~~~~~~~~~~~rg~~f~~~~~~vy~g~i~g~~~~~~d~~~n~~~~k~~~n~r~~~~~~~~~~~~~ 555 (594)
T TIGR01394 476 ETRRNGSLVSMEDGTATAYALWNLQERGVMFVSPGTEVYEGMIIGEHSRENDLDVNPCKAKKLTNVRSSGKDEAVKLTPP 555 (594)
T ss_pred CCCCceeEEECCCCcChHhhhhchhhcccEEeCCCCceeCceEEEeecCcCCcEEecccccccccccccCCCcceeeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhh--hccccceeEEEee
Q psy1760 771 IKIILIY--KYMNGDVAEWLKA 790 (793)
Q Consensus 771 ~~~~le~--~~~~~de~~e~~~ 790 (793)
+.||||+ |||+||||||||.
T Consensus 556 ~~~~le~~~~~~~~de~~evtp 577 (594)
T TIGR01394 556 RKLSLEQALEYIEDDELVEVTP 577 (594)
T ss_pred ccCCHHHHHhhccCCeEEEECc
Confidence 9999999 9999999999995
No 3
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=2.1e-138 Score=1202.28 Aligned_cols=575 Identities=55% Similarity=0.920 Sum_probs=551.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
+||+|+||+|||||||+++|++.++.+.......++++|+.+.|+++|+|+.++...+.|++++++|||||||.+|..++
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v 85 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEV 85 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHH
Confidence 79999999999999999999999888877666667999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEe
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYT 370 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~ 370 (793)
.++++.+|++|+|+|+.+|+++||+++|+.+...++|.|+|+||+|+.++++++++++++++|..++..+++.++|++++
T Consensus 86 ~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~ 165 (607)
T PRK10218 86 ERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYA 165 (607)
T ss_pred HHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999988777667788999999
Q ss_pred ecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCC
Q psy1760 371 SALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDD 450 (793)
Q Consensus 371 SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g 450 (793)
||++|++..+.+....++.+|+++|++++|+|..+.++||+++|+++++++|+|++++|||++|+|++||.|++.+. ++
T Consensus 166 SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~-~~ 244 (607)
T PRK10218 166 SALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDS-EG 244 (607)
T ss_pred EhhcCcccCCccccccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEecC-CC
Confidence 99999976655444558999999999999999888899999999999999999999999999999999999999876 44
Q ss_pred CCCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCeEeCCCCCCCCCCCccCCCceEEEEEecCCCCCCcCcc
Q psy1760 451 KPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGK 530 (793)
Q Consensus 451 ~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~g~e~~ 530 (793)
+....||++|+.+.|.++.++++|.|||||+++|++++.+|||||+.+++.++|++++++|+++|+|.+|+|||+|+++|
T Consensus 245 ~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~~~l~~~~~~~P~~~~~~~~~~sp~~g~e~k 324 (607)
T PRK10218 245 KTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGK 324 (607)
T ss_pred cEeeEEEEEEEEEecCCceECCEEcCCCEEEEECccccccCcEEecCCCcccCCCCCCCCCeEEEEEEeCCCccccchhh
Confidence 33468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHhcCceEEEecCEEEEEEecCeeeCeEEEE
Q psy1760 531 FITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENL 610 (793)
Q Consensus 531 ~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrreg~e~~vs~P~V~yre~~g~llEP~~~~ 610 (793)
++|++++++||.+++++||+|+|++++++++ |+|+|||||||+|++|+|||||||+++++|+|+|||++|++||||+++
T Consensus 325 ~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~-~~v~g~GelHL~il~e~lrreg~e~~~~~P~V~yret~g~klEPi~~v 403 (607)
T PRK10218 325 FVTSRQILDRLNKELVHNVALRVEETEDADA-FRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENV 403 (607)
T ss_pred hhhHHHHHHHHHHhhCCCCeEEEEEcCCCCe-EEEEEEcHHHHHHHHHHHHhCCceEEEeCCEEEEEEECCEEeCCeEEE
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEeccCCCcCCC
Q psy1760 611 FVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDL 690 (793)
Q Consensus 611 ~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i 690 (793)
+|+||+||+|+||++|++|||+|++|++.++++++|+|.+|+|||+||+++|+|+|+|+|+|+++|+||+|++ .|++
T Consensus 404 ~i~vP~e~~G~V~~~l~~RrG~~~~m~~~~~~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~---~g~~ 480 (607)
T PRK10218 404 TLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVR---PGEV 480 (607)
T ss_pred EEEechhhHHHHHHHHHhcCCEEeccEECCCCEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCccCCC---CCCC
Confidence 9999999999999999999999999998656899999999999999999999999999999999999999998 5999
Q ss_pred CccccceeeeccchhHHHHHHhcccccccccccccceeccceEEEeeCCCCCeeecccccccccccccCCcccceeeccc
Q psy1760 691 GKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLINI 770 (793)
Q Consensus 691 ~~~~~g~~v~~~~g~~~~~~l~~~~~rg~~f~~~~~~vy~gmivg~~~~~~d~~~n~~~~k~~~~~r~~~~~~~~~~~~~ 770 (793)
..|.||+|||+++|++|+|||++||+||+|||.||++||+|||||||+|+|||+|||||+||||||||||+|++++|+||
T Consensus 481 ~~~~~g~~~~~~~g~~~~~~l~~~~~rg~~f~~~~~~vy~gmivg~~~~~~d~~vn~~~~k~~tn~r~~~~~~~~~l~~~ 560 (607)
T PRK10218 481 GQRQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPP 560 (607)
T ss_pred CCccceEEEECCCCcCHHHhhhhhhhccceeecCCCcEecceEEeeecCcCCceeccccccccccccccCCCcceeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhh--hccccceeEEEee
Q psy1760 771 IKIILIY--KYMNGDVAEWLKA 790 (793)
Q Consensus 771 ~~~~le~--~~~~~de~~e~~~ 790 (793)
+.||||+ |||+||||||||.
T Consensus 561 ~~~~le~~~~~~~~de~~evtp 582 (607)
T PRK10218 561 IRMTLEQALEFIDDDELVEVTP 582 (607)
T ss_pred ccCCHHHHHhhccCCeEEEECc
Confidence 9999999 9999999999995
No 4
>KOG0462|consensus
Probab=100.00 E-value=3.3e-94 Score=781.11 Aligned_cols=544 Identities=31% Similarity=0.416 Sum_probs=499.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC---eEEEEecCCCcccch
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG---TRINIIDTPGHADFG 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~---~~i~iiDTPGh~df~ 287 (793)
||++|++|+|||||||.++||..+|.+.. .....++||..++|||||||+.+..+++.|++ +.+|+||||||.||+
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~-~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDN-NIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCC-CCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 89999999999999999999999996543 33467899999999999999999999999998 999999999999999
Q ss_pred HHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 288 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 288 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
+|++|.+.+||+|||||||.+|+++||...+.+|.+.|+.+|.|+||+|++.++++++.++++++|..... ++
T Consensus 140 ~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~-------~~ 212 (650)
T KOG0462|consen 140 GEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPA-------EV 212 (650)
T ss_pred ceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCcc-------ce
Confidence 99999999999999999999999999999999999999999999999999999999999999999854332 58
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecC
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNG 447 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~ 447 (793)
+++||++|+ |++++|++|++++|+|....++||+|++|+.++|.|.|+|+++||..|.+++||.|..+.+
T Consensus 213 i~vSAK~G~----------~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t 282 (650)
T KOG0462|consen 213 IYVSAKTGL----------NVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAAT 282 (650)
T ss_pred EEEEeccCc----------cHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeec
Confidence 999999999 8999999999999999999999999999999999999999999999999999999999977
Q ss_pred CCCCCCceeEeEEEEeecCceEEecccCCCcEEEEec-cceeecCCeEeCCCCCCCCCCCccCCCceEEEEEecCCCCCC
Q psy1760 448 PDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITG-IEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAG 526 (793)
Q Consensus 448 ~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~g-l~~i~iGdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~g 526 (793)
++....++-.|.....-...++....+|+||+-.+ ++++.+||||++.....++++++-.+|+.+|.| ++..|+.|
T Consensus 283 --~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~~~v~tl~~~~~~~pMvF-vg~fP~dg 359 (650)
T KOG0462|consen 283 --GKSYEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKSVTKAVETLPGFEPTKPMVF-VGLFPLDG 359 (650)
T ss_pred --CcceEeEEeEEeccCceeeeeecccccceeEecccccccccccceeeecccCcccCcCCCCCCCcceEE-eccccCcc
Confidence 55556777777777777777888888899998876 899999999999886667778888889999999 99999988
Q ss_pred cCccccchHHHHHHhhhhhhcCcceEEEEecCC--CCeEEEEecchhhHHHHHHHHHhc-CceEEEecCEEEEEEe--cC
Q psy1760 527 REGKFITTRQIKNRLDHEIKNNIGLRVTQNKHD--DSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFKTL--NG 601 (793)
Q Consensus 527 ~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~--~~~~~v~g~GelhL~il~e~lrre-g~e~~vs~P~V~yre~--~g 601 (793)
.+ |. .+++++.|+..+|.+..+..+.+. ++||+|+|+|.|||+|++|||+|| |+|+.+++|+|+||-. +|
T Consensus 360 sd--~~---~l~~a~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Eyg~elivt~PtV~Yr~~~~~~ 434 (650)
T KOG0462|consen 360 SD--YE---TLRDAIERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREYGAELIVTPPTVPYRVVYSNG 434 (650)
T ss_pred ch--hh---hHHHHHHHHhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhcCceeeecCCcceEEEEecCC
Confidence 76 43 467777888889999999887664 778999999999999999999998 9999999999999963 22
Q ss_pred ------------------eeeCeEEEEEEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhcc-hHHHH
Q psy1760 602 ------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIG-FQNEF 662 (793)
Q Consensus 602 ------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~g-y~~~l 662 (793)
..||||++.+|.+|+||+|.||+.|+.|||++.+|.+.++.++.|.|.+|+|||.| |+..|
T Consensus 435 ~~~~i~np~~fp~~~~v~~~lEP~v~~tii~P~Ey~G~Vi~Lc~~rRgeq~dm~~i~~nr~~lky~lPl~elv~df~~~l 514 (650)
T KOG0462|consen 435 DEILISNPALFPDPSDVKEFLEPYVEATIITPDEYVGAVIELCSERRGEQKDMTYIDGNRVMLKYQLPLRELVGDFFDRL 514 (650)
T ss_pred ceeeecChhhCCCcccchhhcCceEEEEEECcHHHHHHHHHHHHHhhhheecceeccCCeEEEEEecChHHHHHHHHHHH
Confidence 55999999999999999999999999999999999998777999999999999997 99999
Q ss_pred cccccceEEEEeEecceEeccCCCcCCCCccccceeeeccchhHHHHHHhcccccccccccccceeccceEEEeeCCCCC
Q psy1760 663 ITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDND 742 (793)
Q Consensus 663 ~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~~~~~g~~v~~~~g~~~~~~l~~~~~rg~~f~~~~~~vy~gmivg~~~~~~d 742 (793)
+|.|+|+|+|+++|++|++ +++....-+...++.++.+|.+.+..++.||+.||.++-+.|.+|+++.|.++-|
T Consensus 515 ks~tsGyAs~dye~~gY~~------sdLvkldil~n~~~vd~l~tivh~~~a~~rGr~~v~klk~~ip~Q~~ev~iqa~i 588 (650)
T KOG0462|consen 515 KSLTSGYASFDYEDAGYQA------SDLVKLDILLNGKMVDGLSTIVHLSKAESRGREFVQKLKDLIPRQIFEVHIQACI 588 (650)
T ss_pred hccccceeEEeeccccccc------ccceEEEeeccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhhhhhhhc
Confidence 9999999999999999995 4555555566667899999999999999999999999999999999999999999
Q ss_pred eeecccccccccccccCCcccceeeccccccchhh--hccccceeEEEee
Q psy1760 743 LLVNPIKEKQLTNIRSSGSDEAIQLINIIKIILIY--KYMNGDVAEWLKA 790 (793)
Q Consensus 743 ~~~n~~~~k~~~~~r~~~~~~~~~~~~~~~~~le~--~~~~~de~~e~~~ 790 (793)
..-|++|+|-. |..+|.+.++-+|..++++. +|.++|+..++|.
T Consensus 589 gsk~iare~i~----a~rKdv~akl~ggdv~r~~klL~~q~egkk~mk~v 634 (650)
T KOG0462|consen 589 GSKNIARETIS----AYRKDVLAKLYGGDVTRLKKLLKKQAEGKKRMKTV 634 (650)
T ss_pred ccchhhHHHHH----HhccceeeEecCCchhhHHHHHHhhhcCceeeecc
Confidence 99999999877 88999999999999999999 9999999999874
No 5
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-81 Score=728.97 Aligned_cols=449 Identities=32% Similarity=0.522 Sum_probs=411.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccc--cccccchhhccccceEEeeeeeEEeecC-eEEEEecCCCcccch
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNG-TRINIIDTPGHADFG 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~--~~~~D~~~~e~erGiTi~~~~~~~~~~~-~~i~iiDTPGh~df~ 287 (793)
|||+|+||.+||||||.++||..+|.+++.+.+. +++||+.+.|++|||||.+...++.|++ +.|||||||||.||.
T Consensus 11 RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt 90 (697)
T COG0480 11 RNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFT 90 (697)
T ss_pred eEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccH
Confidence 8999999999999999999999999999877765 6799999999999999999999999996 999999999999999
Q ss_pred HHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhh--------cc-
Q psy1760 288 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL--------CA- 358 (793)
Q Consensus 288 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l--------~~- 358 (793)
.+++++++.+|+||+|+||.+|+++||..+|++|.++++|.|+|+||||+..+++..+.+++++.|... +.
T Consensus 91 ~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v~~pIg~~ 170 (697)
T COG0480 91 IEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPVQLPIGAE 170 (697)
T ss_pred HHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceeeeccccCc
Confidence 999999999999999999999999999999999999999999999999999999999999998877430 00
Q ss_pred -----------------c--------------------------------c-c--------------------------c
Q psy1760 359 -----------------T--------------------------------E-E--------------------------Q 362 (793)
Q Consensus 359 -----------------~--------------------------------~-~--------------------------~ 362 (793)
. + + .
T Consensus 171 ~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~~~~~~ 250 (697)
T COG0480 171 EEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRKGTIAG 250 (697)
T ss_pred cccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHHhhhcc
Confidence 0 0 0 0
Q ss_pred cCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcC--------------------CCCCCceEEEEEEeeeCC
Q psy1760 363 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD--------------------NSNNPLQLQIISLEYSSY 422 (793)
Q Consensus 363 l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~--------------------~~~~p~~~~V~~~~~~~~ 422 (793)
..+|+++.||.++. |++.||+++++++|+|.. +.++||.++|||+.++++
T Consensus 251 ~~~pvl~gsa~kn~----------gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~ 320 (697)
T COG0480 251 KIVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPF 320 (697)
T ss_pred ceeeEEeeecccCC----------cHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCC
Confidence 01567777777664 899999999999999832 347999999999999999
Q ss_pred CceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCeEeCCCCCCC
Q psy1760 423 LGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNG 502 (793)
Q Consensus 423 ~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~~~~~~ 502 (793)
.|+++++|||||+|++||.|++... ..++||.+|+.++|.++++++++.||||+++.|++++.+|||+|+...+..
T Consensus 321 ~g~l~~~RvysGtl~~G~~v~n~~~----~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~~tGdTl~~~~~~v~ 396 (697)
T COG0480 321 VGKLTFVRVYSGTLKSGSEVLNSTK----GKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDATTGDTLCDENKPVI 396 (697)
T ss_pred CCeEEEEEEeccEEcCCCEEEeCCC----CccEEEEEEEEccCCceeecccccCccEEEEEcccccccCCeeecCCCccc
Confidence 9999999999999999999998755 357999999999999999999999999999999999999999999886778
Q ss_pred CCCCccCCCceEEEEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHh
Q psy1760 503 LPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRR 582 (793)
Q Consensus 503 l~~~~~~~P~~~~~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrr 582 (793)
++++.+++|++++++.|.+. . +..||.++|.++.++||+++++.+++++| ++|+|||||||+|++++|+|
T Consensus 397 ~~~~~~pePVi~vavepk~~----~-----d~~Kl~~aL~~l~~eDPt~~v~~d~Etge-~iIsGmGELHLei~~drl~~ 466 (697)
T COG0480 397 LESMEFPEPVISVAVEPKTK----A-----DQEKLSEALNKLAEEDPTFRVETDEETGE-TIISGMGELHLEIIVDRLKR 466 (697)
T ss_pred cccccCCCceEEEEEeECCh----h-----hHHHHHHHHHHHHhhCCceEEEEcCCccc-EEEEecchhhHHHHHHHHHh
Confidence 89999999999999998763 1 34789999999999999999999999999 99999999999999999997
Q ss_pred c-CceEEEecCEEEEEEe-c------------------------------------------------------------
Q psy1760 583 E-GYELSVSRPRVIFKTL-N------------------------------------------------------------ 600 (793)
Q Consensus 583 e-g~e~~vs~P~V~yre~-~------------------------------------------------------------ 600 (793)
+ |+|+.+++|+|+|||+ .
T Consensus 467 ~~~Vev~~~~PqV~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~~~~f~~~i~~g~~P~~yi~~ve~G~~~ 546 (697)
T COG0480 467 EFGVEVEVGKPQVAYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGSGFEFVDKIVGGVVPKEYIPAVEKGFRE 546 (697)
T ss_pred hcCceEEecCCeeEEEEeecccccceeeeeeccCCCCcccEEEEEEEeCCCCcceEEEeecccCcCchhhhHHHHHHHHH
Confidence 6 9999999999999996 0
Q ss_pred ----C----------------------------------------------eeeCeEEEEEEEeCCcchHHHHHHhhccC
Q psy1760 601 ----G----------------------------------------------ELYEPYENLFVDIEEINQGIIMQKLNYRG 630 (793)
Q Consensus 601 ----g----------------------------------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rr 630 (793)
| ++|||||+|+|.+|++|+|+||++|++||
T Consensus 547 a~~~GpLag~pv~dvkv~L~dgs~h~vdss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~rR 626 (697)
T COG0480 547 ALKSGPLAGYPVVDVKVTLLDGSYHEVDSSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNSRR 626 (697)
T ss_pred HHhcCCCCCCceEeeEEEEEcCccccCCCCHHHHHHHHHHHHHHHHhhCCceEecceEEEEEEcchhhhchhHHhhhhcc
Confidence 0 89999999999999999999999999999
Q ss_pred ceeeeeeec-cCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEecc
Q psy1760 631 GDLKNIEIN-EKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 631 G~~~~~~~~-~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
|++++|+.. ++++..|++++|++||+||.++|||+|+|+|.|+++|+||++++
T Consensus 627 G~I~~~~~~~~~~~~~i~A~vPl~Emfgya~dLRs~T~Gra~~~m~f~~y~~vp 680 (697)
T COG0480 627 GQILGMEQRPGGGLDVIKAEVPLAEMFGYATDLRSATQGRASFSMEFDHYEEVP 680 (697)
T ss_pred eEEeceeeccCCceEEEEEEechHHhccchhhhHhhcCCceeEEEEecccEeCC
Confidence 999999986 35789999999999999999999999999999999999999998
No 6
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=6.1e-81 Score=726.27 Aligned_cols=492 Identities=28% Similarity=0.437 Sum_probs=440.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec--C---eEEEEecCCCccc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--G---TRINIIDTPGHAD 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~--~---~~i~iiDTPGh~d 285 (793)
|||+|+||+|||||||+++|+..++.+.... ..++++|..+.|+++|+|+.+....+.|. + +.++|||||||.+
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~-~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISERE-MREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCcccc-ccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 7999999999999999999999888776542 35678899999999999999999988884 3 7899999999999
Q ss_pred chHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 286 FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 286 f~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
|..++.++++.||++|+|+|+++|++.||..+|..+...++|+|+|+||+|+.+++.+++.+++.+.+ +.. ..
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~l---g~~----~~ 155 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVI---GLD----AS 155 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHh---CCC----cc
Confidence 99999999999999999999999999999999988888899999999999998766655555655543 211 12
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEe
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 445 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~ 445 (793)
+++++||++|. |+++|+++|.+.+|+|..+.++||+++|+++++++|.|++++|||++|+|++||.|.+.
T Consensus 156 ~vi~vSAktG~----------GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~ 225 (595)
T TIGR01393 156 EAILASAKTGI----------GIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFM 225 (595)
T ss_pred eEEEeeccCCC----------CHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEe
Confidence 48999999998 99999999999999999888999999999999999999999999999999999999998
Q ss_pred cCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe-c---cceeecCCeEeCCCCC--CCCCCCccCCCceEEEEEe
Q psy1760 446 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT-G---IEEICIGSTICDPSKP--NGLPMLNIDEPTLTINFMV 519 (793)
Q Consensus 446 ~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~-g---l~~i~iGdtl~~~~~~--~~l~~~~~~~P~~~~~~~~ 519 (793)
+. | ...+|.+|+.+.+.. .++++|.|||++++. | ++++.+||||++.+++ .++|++++++|++.+.+.|
T Consensus 226 ~~--~--~~~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~v~~~i~p 300 (595)
T TIGR01393 226 ST--G--KEYEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNPAKEPLPGFKEVKPMVFAGLYP 300 (595)
T ss_pred cC--C--CeeEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCccCCCCEEECCCCccccCCCCCcCCCcEEEEEEEE
Confidence 77 3 368899999777554 999999999998774 4 5678999999998877 4889999999999999988
Q ss_pred cCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCC--CCeEEEEecchhhHHHHHHHHHhc-CceEEEecCEEEE
Q psy1760 520 NNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHD--DSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIF 596 (793)
Q Consensus 520 ~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~--~~~~~v~g~GelhL~il~e~lrre-g~e~~vs~P~V~y 596 (793)
.++ + +..+|.++|.|+.+|||||+|+.+.+. +.||+|+|||+|||+|++|||+|| |+|+.+++|+|+|
T Consensus 301 ~~~---~------d~~kL~~aL~kL~~eD~sl~~~~e~~~~l~~g~r~g~lG~lHlei~~erL~re~~~~v~~~~P~V~Y 371 (595)
T TIGR01393 301 IDT---E------DYEDLRDALEKLKLNDASLTYEPESSPALGFGFRCGFLGLLHMEIIQERLEREFNLDLITTAPSVIY 371 (595)
T ss_pred CCc---c------cHHHHHHHHHHHhccCCeEEEEecCCcccccccEEeeeeHHHHHHHHHHHHHHhCCeeEEecCEEEE
Confidence 764 1 236899999999999999999874322 346899999999999999999986 9999999999999
Q ss_pred EEe--cCe------------------eeCeEEEEEEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhh-
Q psy1760 597 KTL--NGE------------------LYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGL- 655 (793)
Q Consensus 597 re~--~g~------------------llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l- 655 (793)
||+ +|. +||||++++|.+|++|+|+||++|++|||++++|++.+++++.|+|.+|++|+
T Consensus 372 reti~~g~~~~~~~p~~~p~~~~~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~~~~~i~~~~Plae~~ 451 (595)
T TIGR01393 372 RVYLTNGEVIEVDNPSDLPDPGKIEHVEEPYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDPNRVELIYEMPLAEIV 451 (595)
T ss_pred EEEecCCcEEEEECcccCCCcccccceeCCeEEEEEEccHHHHHHHHHHHHHcCCEEeCcEEcCCCeEEEEEEeccchhh
Confidence 995 554 99999999999999999999999999999999999865568999999999997
Q ss_pred cchHHHHcccccceEEEEeEecceEeccCCCcCCCCccccceee-----------eccchhHHHHHHhcccccccccccc
Q psy1760 656 IGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLI-----------SQYSGKAVAYSLWKLQDRGRLFINH 724 (793)
Q Consensus 656 ~gy~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~~~~~g~~v-----------~~~~g~~~~~~l~~~~~rg~~f~~~ 724 (793)
++|.++|+|+|+|+|+|+++|+||+|.. +.++....||..| |...|+..+-.|..+.+| ++|-+|
T Consensus 452 ~~~~~~Lks~T~G~gs~~~~~~~Y~~~~---~~~~~~~~n~~~~d~l~~~~~~~~~~~~~~~~~~~l~~~i~~-~~~~~~ 527 (595)
T TIGR01393 452 YDFFDKLKSISRGYASFDYELIGYRPSD---LVKLDILINGEPVDALSFIVHRDKAYSRGREICEKLKELIPR-QQFEIP 527 (595)
T ss_pred hchhHHhhhhcCCEEEEEEEECCccccc---eEEEEEEECCcccceeEEeeeHHHHHHHHHHHHHHHHhhCCh-hhccch
Confidence 8999999999999999999999999987 8999999999988 788999999999999999 999999
Q ss_pred cceeccceEEEeeC
Q psy1760 725 NDLVYEGMIIGIHS 738 (793)
Q Consensus 725 ~~~vy~gmivg~~~ 738 (793)
.|.+.+|.||....
T Consensus 528 ~qa~~~~~~~a~~~ 541 (595)
T TIGR01393 528 IQAAIGGKIIARET 541 (595)
T ss_pred hhhhhCCEEEEeec
Confidence 99999999999764
No 7
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=1.1e-80 Score=724.92 Aligned_cols=491 Identities=28% Similarity=0.429 Sum_probs=441.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec-----CeEEEEecCCCccc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-----GTRINIIDTPGHAD 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~-----~~~i~iiDTPGh~d 285 (793)
||++|+||+|||||||+++|++.++.+.... ...+++|..+.|++||+|+.+....+.|. ++.++|||||||.|
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~-~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSERE-MKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccc-cccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 7999999999999999999999988876543 25688999999999999999999989885 68899999999999
Q ss_pred chHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 286 FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 286 f~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
|..++.++++.+|++|+|+|+++|++.||..+|..+...++|.|+|+||+|+..++++.+.+++.+.+ +.. ..
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~l---g~~----~~ 159 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVI---GID----AS 159 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHh---CCC----cc
Confidence 99999999999999999999999999999999999988999999999999998776666666665543 211 12
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEe
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 445 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~ 445 (793)
+++++||++|. |+++|+++|.+.+|+|..+.++||+++|++++++++.|++++|||++|+|++||.|++.
T Consensus 160 ~vi~iSAktG~----------GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~ 229 (600)
T PRK05433 160 DAVLVSAKTGI----------GIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMM 229 (600)
T ss_pred eEEEEecCCCC----------CHHHHHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEe
Confidence 48999999998 99999999999999999888999999999999999999999999999999999999998
Q ss_pred cCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe-c---cceeecCCeEeCCCCC--CCCCCCccCCCceEEEEEe
Q psy1760 446 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT-G---IEEICIGSTICDPSKP--NGLPMLNIDEPTLTINFMV 519 (793)
Q Consensus 446 ~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~-g---l~~i~iGdtl~~~~~~--~~l~~~~~~~P~~~~~~~~ 519 (793)
+. | ...+|.+|+.+.+ ++.++++|.||||+++. | ++++.+||||++..++ .++|+++.++|++++.+.|
T Consensus 230 ~~--~--~~~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~v~~~i~p 304 (600)
T PRK05433 230 ST--G--KEYEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPAEEPLPGFKEVKPMVFAGLYP 304 (600)
T ss_pred cC--C--ceEEEEEeeccCC-CceECcEEcCCCEEEEecccccccccCCCCEEECCCCccccCCCCCCCCCcEEEEEEEE
Confidence 87 3 3688999997764 88999999999998875 4 5678999999998877 5899999999999999988
Q ss_pred cCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCC--CCeEEEEecchhhHHHHHHHHHhc-CceEEEecCEEEE
Q psy1760 520 NNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHD--DSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIF 596 (793)
Q Consensus 520 ~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~--~~~~~v~g~GelhL~il~e~lrre-g~e~~vs~P~V~y 596 (793)
.+. ++ ..+|.++|.|+.+|||||+++.+.+. +.||+|++||+|||+|++|||+|| |+|+.+++|+|+|
T Consensus 305 ~~~---~d------~~kL~~aL~kL~~eD~sl~~~~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~~~~v~~~~P~V~Y 375 (600)
T PRK05433 305 VDS---DD------YEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSVVY 375 (600)
T ss_pred CCc---cC------HHHHHHHHHHHHHhCCeEEEEecCCcceecceEeecHHHHHHHHHHHHHHHhhCceEEEecCEEEE
Confidence 763 22 36899999999999999999843221 245777779999999999999986 9999999999999
Q ss_pred EEe--cC------------------eeeCeEEEEEEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhh-
Q psy1760 597 KTL--NG------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGL- 655 (793)
Q Consensus 597 re~--~g------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l- 655 (793)
||+ +| .+||||++++|.||++|+|+||++|++|||++++|++. ++++.|+|++|++||
T Consensus 376 reti~~g~~~~~~~p~~~pds~~~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~-~~~~~i~~~~Pl~e~~ 454 (600)
T PRK05433 376 EVTLTDGEVIEVDNPSKLPDPGKIEEIEEPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYL-GNRVELTYELPLAEIV 454 (600)
T ss_pred EEEEeCCcEEEEECcccCCCccccceEECCEEEEEEEecHHHHHHHHHHHHHcCCEEeCcEec-CCeEEEEEEechHHhh
Confidence 994 55 89999999999999999999999999999999999985 468999999999999
Q ss_pred cchHHHHcccccceEEEEeEecceEeccCCCcCCCCccccceee-----------eccchhHHHHHHhcccccccccccc
Q psy1760 656 IGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLI-----------SQYSGKAVAYSLWKLQDRGRLFINH 724 (793)
Q Consensus 656 ~gy~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~~~~~g~~v-----------~~~~g~~~~~~l~~~~~rg~~f~~~ 724 (793)
++|.++|+|+|+|+|+|+++|+||++.. +.++....||..| +...|+..+..|..+.+| ++|-.|
T Consensus 455 ~~~~~~Lks~T~G~gs~~~~~~~Y~~~~---~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~i~~-~~~~~~ 530 (600)
T PRK05433 455 FDFFDRLKSVSRGYASLDYEFIGYRESD---LVKLDILINGEPVDALSFIVHRDKAYERGRALVEKLKELIPR-QQFEIP 530 (600)
T ss_pred hhHHHHhHhhcCCEEEEEEEECCccccc---EEEEEEEECCcccceeEEeeeHHHHHHHHHHHHHHHHhhCCh-hhccch
Confidence 8999999999999999999999999987 8999999999988 788999999999999999 999999
Q ss_pred cceeccceEEEeeC
Q psy1760 725 NDLVYEGMIIGIHS 738 (793)
Q Consensus 725 ~~~vy~gmivg~~~ 738 (793)
.|.+.+|.||....
T Consensus 531 ~qa~~~~~~~~~~~ 544 (600)
T PRK05433 531 IQAAIGSKIIARET 544 (600)
T ss_pred hhhhhCCEEEEEec
Confidence 99999999999764
No 8
>KOG0465|consensus
Probab=100.00 E-value=1e-79 Score=674.02 Aligned_cols=447 Identities=30% Similarity=0.494 Sum_probs=408.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccc--cccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~--~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 288 (793)
+||.|.+|.++||||+.+++++..|.......+. ...||+.+.|++|||||.+....+.|.++.|||||||||.||.-
T Consensus 40 RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~ 119 (721)
T KOG0465|consen 40 RNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTF 119 (721)
T ss_pred cccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEE
Confidence 7999999999999999999999998887766654 68899999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhh--------c---
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL--------C--- 357 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l--------~--- 357 (793)
||+|+++..|+||+|+|+..|++.||..+|+++.++++|.|.+|||||+.++++..+++++...|... +
T Consensus 120 EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiPig~e~ 199 (721)
T KOG0465|consen 120 EVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIPIGSES 199 (721)
T ss_pred EehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999988765310 0
Q ss_pred -------------------------------------------------cccccc-------------------------
Q psy1760 358 -------------------------------------------------ATEEQL------------------------- 363 (793)
Q Consensus 358 -------------------------------------------------~~~~~l------------------------- 363 (793)
..++.+
T Consensus 200 ~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIRr~Ti~ 279 (721)
T KOG0465|consen 200 NFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIRRATIK 279 (721)
T ss_pred cchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHHHHHhh
Confidence 000000
Q ss_pred --CccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcC--------------------CCC-CCceEEEEEEeee
Q psy1760 364 --DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD--------------------NSN-NPLQLQIISLEYS 420 (793)
Q Consensus 364 --~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~--------------------~~~-~p~~~~V~~~~~~ 420 (793)
-.||+++||+++. |+++|||++++++|+|.. ..+ .||.++.||+..+
T Consensus 280 r~fvPVl~GSAlKNk----------GVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g 349 (721)
T KOG0465|consen 280 RSFVPVLCGSALKNK----------GVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLEEG 349 (721)
T ss_pred cceeeEEechhhccc----------CcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEeeec
Confidence 1799999999987 999999999999999942 122 3999999999999
Q ss_pred CCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCeEeCC-CC
Q psy1760 421 SYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDP-SK 499 (793)
Q Consensus 421 ~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~-~~ 499 (793)
++ |.+.|.|||+|+|++|+.|++.++ | ++.|+..|..++....++|+++.|||||++.|+ ++..|||+++. ..
T Consensus 350 ~f-GqLTyvRvYqG~L~kG~~iyN~rt--g--KKvrv~RL~rmHa~~medV~~v~AG~I~alfGi-dcasGDTftd~~~~ 423 (721)
T KOG0465|consen 350 RF-GQLTYVRVYQGTLSKGDTIYNVRT--G--KKVRVGRLVRMHANDMEDVNEVLAGDICALFGI-DCASGDTFTDKQNL 423 (721)
T ss_pred Cc-cceEEEEEeeeeecCCcEEEecCC--C--ceeEhHHHhHhcccccchhhhhhccceeeeecc-ccccCceeccCccc
Confidence 99 999999999999999999999877 4 479999999999999999999999999999999 89999999998 66
Q ss_pred CCCCCCCccCCCceEEEEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHH
Q psy1760 500 PNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIEN 579 (793)
Q Consensus 500 ~~~l~~~~~~~P~~~~~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~ 579 (793)
...+..+.+|+|++++++.|++. + +..++.++|.+...|||+++|..+.+.+| ++|+|||||||+|..||
T Consensus 424 ~~~m~si~vPePVis~aikP~~k----~-----d~~~fskaL~rf~~EDPtFrv~~d~E~kq-TvIsGMGELHLEIy~eR 493 (721)
T KOG0465|consen 424 ALSMESIHIPEPVISVAIKPVNK----K-----DADNFSKALNRFTKEDPTFRVSLDPEMKQ-TVISGMGELHLEIYVER 493 (721)
T ss_pred cceeeeeecCCCeeEEEeccccc----c-----cHHHHHHHHHhhcccCCceEEEecccccc-chhhccchhhHHHHHHH
Confidence 67788999999999999998764 2 23578999999999999999999999999 99999999999999999
Q ss_pred HHhc-CceEEEecCEEEEEEe-----------------------------------------------------------
Q psy1760 580 MRRE-GYELSVSRPRVIFKTL----------------------------------------------------------- 599 (793)
Q Consensus 580 lrre-g~e~~vs~P~V~yre~----------------------------------------------------------- 599 (793)
|+|| |+++.+++|+|.|||+
T Consensus 494 l~rEy~~~~~~Gkp~VayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~eF~~~~~g~~~P~~f~pa~e 573 (721)
T KOG0465|consen 494 LVREYKVDAELGKPQVAYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKFEFSDEIVGGNVPKQFIPAVE 573 (721)
T ss_pred HHHHhCCccccCCceeeehhhcCCcccceeeeccccCCCccccceeeEEeecCCCCCceEEEEecccCCCCchhHHHHHH
Confidence 9997 9999999999999995
Q ss_pred -------------------------cC-----------------------------eeeCeEEEEEEEeCCcchHHHHHH
Q psy1760 600 -------------------------NG-----------------------------ELYEPYENLFVDIEEINQGIIMQK 625 (793)
Q Consensus 600 -------------------------~g-----------------------------~llEP~~~~~i~vp~e~~G~v~~~ 625 (793)
|| .+|||||.|+|.+|+||+|.|+++
T Consensus 574 kg~~e~~~~G~L~ghpl~~~r~~l~Dga~h~vds~elaf~~at~~a~r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~~ 653 (721)
T KOG0465|consen 574 KGFEEIVAKGPLIGHPLSNLRIVLQDGAHHPVDSSELAFMKATRNAFREAFKRAPPRILEPIMNVEVTTPEEFQGTVIGD 653 (721)
T ss_pred HHHHHHHhcCCccCCcccceEEEEecCCcCcccccHHHHHHHHHHHHHHHHHhCCcceeecceeeEEecchhhhhhhhhh
Confidence 00 789999999999999999999999
Q ss_pred hhccCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEeccC
Q psy1760 626 LNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYN 684 (793)
Q Consensus 626 l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~~ 684 (793)
|++|+|.|.+.+. .+++..|.+++|+++|+||.++|||+|+|+|.|+|+|++|+|+++
T Consensus 654 L~kR~a~I~~~d~-~~~~~ti~A~VPL~~mfgYss~LRslTqGkgeftMEys~y~p~~~ 711 (721)
T KOG0465|consen 654 LNKRKAQITGIDS-SEDYKTIKAEVPLNEMFGYSSELRSLTQGKGEFTMEYSRYSPVPP 711 (721)
T ss_pred hhhcccEEecccC-CCceEEEEecccHHHHhhhhhhhhhhhcCcceEEEeecccCCCch
Confidence 9999999999987 678999999999999999999999999999999999999999983
No 9
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.4e-78 Score=649.23 Aligned_cols=492 Identities=28% Similarity=0.441 Sum_probs=447.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC-----eEEEEecCCCccc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-----TRINIIDTPGHAD 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~-----~~i~iiDTPGh~d 285 (793)
||++|++|.+||||||.++|+..++.+..+. ..+.++|+.++|+||||||.+....+.|+. +.+|+||||||.|
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Re-m~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD 88 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSERE-MRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 88 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHH-HHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccc
Confidence 7999999999999999999999998876543 346889999999999999999999998863 8899999999999
Q ss_pred chHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 286 FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 286 f~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
|..|+.|++..|.++||||||+.|+++||......|.+.++.+|.|+||+|++.++++++.+++.+.+. +.+.
T Consensus 89 FsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iG-id~~------ 161 (603)
T COG0481 89 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIG-IDAS------ 161 (603)
T ss_pred eEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhC-CCcc------
Confidence 999999999999999999999999999999999999999999999999999999999999999988752 2222
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEe
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 445 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~ 445 (793)
..+.+||++|. |++++|++|++.+|+|..+.++|+++++++.+||+|.|.+++.||+.|++++||.|.++
T Consensus 162 dav~~SAKtG~----------gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m 231 (603)
T COG0481 162 DAVLVSAKTGI----------GIEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMM 231 (603)
T ss_pred hheeEecccCC----------CHHHHHHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEE
Confidence 26889999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEE-ecc---ceeecCCeEeCCCCC--CCCCCCccCCCceEEEEEe
Q psy1760 446 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI-TGI---EEICIGSTICDPSKP--NGLPMLNIDEPTLTINFMV 519 (793)
Q Consensus 446 ~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i-~gl---~~i~iGdtl~~~~~~--~~l~~~~~~~P~~~~~~~~ 519 (793)
.+ | ....|.++..|. .+..+.++..|||+..+ +|+ .++.+||||+...+| .+||.++-..|++..-+.|
T Consensus 232 ~t--g--~~y~V~evGvft-P~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~LpGfk~~~P~Vf~GlyP 306 (603)
T COG0481 232 ST--G--KEYEVDEVGIFT-PKMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPLPGFKEVKPMVFAGLYP 306 (603)
T ss_pred ec--C--CEEEEEEEeecc-CCccccccccCCceeEEEEeeeecccCcccceEeccCCCccccCCCCCcCCceEEEeecc
Confidence 87 4 467899998887 68899999999999876 455 567899999965555 7888888777877777765
Q ss_pred cCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCC--CCeEEEEecchhhHHHHHHHHHhc-CceEEEecCEEEE
Q psy1760 520 NNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHD--DSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIF 596 (793)
Q Consensus 520 ~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~--~~~~~v~g~GelhL~il~e~lrre-g~e~~vs~P~V~y 596 (793)
-++ . +.+.|+++|.|+..+|.||.+|.+.+. |-||+++++|.|||+|+.|||+|| ++++..+.|+|+|
T Consensus 307 id~------~---dye~LrdAleKL~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf~ldlI~TaPsV~Y 377 (603)
T COG0481 307 VDS------D---DYEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSVVY 377 (603)
T ss_pred cCh------h---HHHHHHHHHHhcccccceeeeccccchhccCceeehhhhHHHHHHHHHHHHHhhCcceEecCCceEE
Confidence 543 2 237899999999999999999998664 778999999999999999999987 9999999999999
Q ss_pred EE--ecC------------------eeeCeEEEEEEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhc
Q psy1760 597 KT--LNG------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLI 656 (793)
Q Consensus 597 re--~~g------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~ 656 (793)
+- ++| ...|||.+++|.+|+||+|.||+.++.+||.+.+|+..+..++.|.|++|++|++
T Consensus 378 ~v~~~~g~~~~i~NPs~~P~~~~I~~i~EP~v~~~ii~P~eylG~vm~Lcq~kRG~~~~m~yl~~~rv~l~Y~lPl~Eiv 457 (603)
T COG0481 378 KVELTDGEEIEVDNPSDLPDPNKIEEIEEPYVKATIITPQEYLGNVMELCQEKRGIQIDMEYLDQNRVMLTYELPLAEIV 457 (603)
T ss_pred EEEEcCCcEEEecChHhCCChhhhheeeCceeEEEEeCcHHHHHHHHHHHHHhcCceecceEecCceEEEEEecchHHHH
Confidence 96 343 7899999999999999999999999999999999999877899999999999986
Q ss_pred -chHHHHcccccceEEEEeEecceEeccCCCcCCCCccccceee-----------eccchhHHHHHHhcccccccccccc
Q psy1760 657 -GFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLI-----------SQYSGKAVAYSLWKLQDRGRLFINH 724 (793)
Q Consensus 657 -gy~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~~~~~g~~v-----------~~~~g~~~~~~l~~~~~rg~~f~~~ 724 (793)
+|.+.|+|.|+|+|+|+++|.+|++.. +.++....||..| +.+.|+..+-.|..+.+| ++|-.|
T Consensus 458 ~DFfDkLKS~skGYAS~DYe~~~y~~~~---lVK~dIlvNge~VDALs~ivHrd~A~~rgr~~~~KlKelIPr-q~Feip 533 (603)
T COG0481 458 FDFFDKLKSISKGYASFDYEFIGYRESD---LVKVDILVNGEKVDALSFIVHRDNAYERGRELVEKLKELIPR-QQFEIP 533 (603)
T ss_pred HHHhHhhhccccceeeeccccccccccc---eEEEEEEecCccccceeeeechhHHHHHHHHHHHHHHhhccH-hheeee
Confidence 999999999999999999999999987 8899999999988 788999999999999999 999999
Q ss_pred cceeccceEEEeeC
Q psy1760 725 NDLVYEGMIIGIHS 738 (793)
Q Consensus 725 ~~~vy~gmivg~~~ 738 (793)
.|.+..+.||....
T Consensus 534 IQAaIg~kiIARet 547 (603)
T COG0481 534 IQAAIGSKIIARET 547 (603)
T ss_pred eehhhCCeEEEhhh
Confidence 99999999999764
No 10
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=4.9e-76 Score=700.47 Aligned_cols=448 Identities=30% Similarity=0.465 Sum_probs=404.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccc--cccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~--~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 288 (793)
+||+|+||+|+|||||+++|++.++.....+.+. ++++|+.+.|++||+|+++....+.|+++.++|+|||||.||..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ 90 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTI 90 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHH
Confidence 7999999999999999999999888776554443 58999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhc-----------
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC----------- 357 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~----------- 357 (793)
++.++++.+|++|+|+||.+|++.||+.+|+.+.+.++|.|+|+||+|+.++++.++++++++.+....
T Consensus 91 ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipisa~~ 170 (693)
T PRK00007 91 EVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLPIGAED 170 (693)
T ss_pred HHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEecCccCC
Confidence 999999999999999999999999999999999999999999999999998887777777766543200
Q ss_pred ---------------c--c---------------------------------c----------c----------------
Q psy1760 358 ---------------A--T---------------------------------E----------E---------------- 361 (793)
Q Consensus 358 ---------------~--~---------------------------------~----------~---------------- 361 (793)
. . + .
T Consensus 171 ~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~~l~~~~~ 250 (693)
T PRK00007 171 DFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKAALRKATI 250 (693)
T ss_pred cceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHHHHHHHHh
Confidence 0 0 0 0
Q ss_pred -ccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcC--------------------CCCCCceEEEEEEeee
Q psy1760 362 -QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD--------------------NSNNPLQLQIISLEYS 420 (793)
Q Consensus 362 -~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~--------------------~~~~p~~~~V~~~~~~ 420 (793)
..-+||+++||.++. |++.||++|.+++|+|.. ++++||.++|||+.++
T Consensus 251 ~~~~~Pv~~gSa~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d 320 (693)
T PRK00007 251 ANEIVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTD 320 (693)
T ss_pred cCcEEEEEecccccCc----------CHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeeec
Confidence 012789999999887 999999999999999852 3467999999999999
Q ss_pred CCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCeEeCCCCC
Q psy1760 421 SYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKP 500 (793)
Q Consensus 421 ~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~~~~ 500 (793)
++.|+++++||+||+|++||.|++... ...++|.+|+.+.|.++.++++|.|||||++.|++++.+||||++.+.+
T Consensus 321 ~~~G~ia~~RV~sGtl~~g~~v~~~~~----~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdtL~~~~~~ 396 (693)
T PRK00007 321 PFVGKLTFFRVYSGVLESGSYVLNSTK----GKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDTTTGDTLCDEKNP 396 (693)
T ss_pred CCCCcEEEEEEeeeEEcCCCEEEeCCC----CceeEeceeEEeccCCcccccccCCCcEEEEeCCccCCcCCEeeCCCCc
Confidence 999999999999999999999987544 2357999999999999999999999999999999999999999988877
Q ss_pred CCCCCCccCCCceEEEEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHH
Q psy1760 501 NGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENM 580 (793)
Q Consensus 501 ~~l~~~~~~~P~~~~~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~l 580 (793)
..++++.+++|++++++.|.+. . +..+|.++|.++.++||+|+|..+++++| ++|+|+|||||+|++++|
T Consensus 397 ~~l~~~~~~~Pv~~~aIep~~~---~------d~~kL~~aL~~L~~eDpsl~v~~~~etge-~~l~g~GelHLei~~~rL 466 (693)
T PRK00007 397 IILESMEFPEPVISVAVEPKTK---A------DQEKMGIALQKLAEEDPSFRVSTDEETGQ-TIIAGMGELHLDIIVDRM 466 (693)
T ss_pred cccCCCCCCCceEEEEEEECCc---c------cHHHHHHHHHHHHHhCCeEEEEEcCCCCC-EEEEEecHHhHHHHHHHH
Confidence 7788888999999999998764 2 23689999999999999999999999999 999999999999999999
Q ss_pred Hhc-CceEEEecCEEEEEEe-------c----------------------------------------------------
Q psy1760 581 RRE-GYELSVSRPRVIFKTL-------N---------------------------------------------------- 600 (793)
Q Consensus 581 rre-g~e~~vs~P~V~yre~-------~---------------------------------------------------- 600 (793)
+++ |+|+.+++|+|+|||+ .
T Consensus 467 ~~~~~vev~~s~p~V~yrETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~~~~~~f~~~i~~g~~~~~~~~av~~G~ 546 (693)
T PRK00007 467 KREFKVEANVGKPQVAYRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEPGKGYEFVNKIVGGVIPKEYIPAVDKGI 546 (693)
T ss_pred HHHhCCeeEecCCEEEEeecccCccccCcccccccCCCCceEEEEEEEEeCCCCCCcEEeecccCCcCcHHHHHHHHHHH
Confidence 975 9999999999999994 0
Q ss_pred ------C----------------------------------------------eeeCeEEEEEEEeCCcchHHHHHHhhc
Q psy1760 601 ------G----------------------------------------------ELYEPYENLFVDIEEINQGIIMQKLNY 628 (793)
Q Consensus 601 ------g----------------------------------------------~llEP~~~~~i~vp~e~~G~v~~~l~~ 628 (793)
| .||||||+++|.||++|+|+||++|++
T Consensus 547 ~~a~~~GpL~g~pv~~v~v~l~d~~~~~~ds~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~ 626 (693)
T PRK00007 547 QEAMESGVLAGYPVVDVKVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEEYMGDVIGDLNS 626 (693)
T ss_pred HHHHhcCCcCCCceeeEEEEEEecccCCCCCcHHHHHHHHHHHHHHHHHHCCCEEecCcEEEEEEechhhhhhHHHHHHh
Confidence 0 689999999999999999999999999
Q ss_pred cCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEecc
Q psy1760 629 RGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 629 rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
|||++.+|++ .++++.|+|.+|+++++||.++|+++|+|+|+|+++|+||++++
T Consensus 627 RRg~i~~~~~-~~~~~~i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~ 680 (693)
T PRK00007 627 RRGQIEGMED-RGGAKVIRAEVPLSEMFGYATDLRSMTQGRATYSMEFDHYEEVP 680 (693)
T ss_pred CCCeEecccc-cCCcEEEEEEcCHHHhhccHHHHHhhcCCceEEEEEeceeeECC
Confidence 9999999987 45688999999999999999999999999999999999999998
No 11
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=1.7e-74 Score=688.07 Aligned_cols=448 Identities=29% Similarity=0.469 Sum_probs=404.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccc--cccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~--~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 288 (793)
+||+|+||+|+|||||+++|++.++.+...+.+. ++++|+.+.|++||+|+++....+.|++++++|||||||.+|..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~ 90 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV 90 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence 7999999999999999999999888776555443 48899999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhc-----------
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC----------- 357 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~----------- 357 (793)
++.++++.+|++|+|+|+.+|+..|+..+|+.+...++|.++|+||+|+..+++.++++++.+.+....
T Consensus 91 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipis~~~ 170 (689)
T TIGR00484 91 EVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLPIGAED 170 (689)
T ss_pred HHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEeccccCC
Confidence 999999999999999999999999999999999999999999999999998887777777776543200
Q ss_pred --------------------------------------------------ccc--------------------------c
Q psy1760 358 --------------------------------------------------ATE--------------------------E 361 (793)
Q Consensus 358 --------------------------------------------------~~~--------------------------~ 361 (793)
.++ .
T Consensus 171 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l~~~~~~ 250 (689)
T TIGR00484 171 NFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNAIRKGVLN 250 (689)
T ss_pred CceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 000 0
Q ss_pred ccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcC-------------------CCCCCceEEEEEEeeeCC
Q psy1760 362 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD-------------------NSNNPLQLQIISLEYSSY 422 (793)
Q Consensus 362 ~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~-------------------~~~~p~~~~V~~~~~~~~ 422 (793)
..-+||+++||.++. |++.||++|..++|+|.. ++++||.++|||+.++++
T Consensus 251 ~~~~PV~~gSa~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~ 320 (689)
T TIGR00484 251 CEFFPVLCGSAFKNK----------GVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVATDPF 320 (689)
T ss_pred CCEEEEEeccccCCc----------cHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEeeecCC
Confidence 012789999999887 999999999999999852 346799999999999999
Q ss_pred CceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCeEeCCCCCCC
Q psy1760 423 LGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNG 502 (793)
Q Consensus 423 ~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~~~~~~ 502 (793)
.|+++++||+||+|+.||.|++... + ..++|.+|+.+.|.++.++++|.|||||+|.|++++.+||||++.+.+..
T Consensus 321 ~G~i~~~RV~sGtL~~g~~v~~~~~--~--~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~ 396 (689)
T TIGR00484 321 VGQLTFVRVYSGVLKSGSYVKNSRK--N--KKERVGRLVKMHANNREEIKEVRAGDICAAIGLKDTTTGDTLCDPKIDVI 396 (689)
T ss_pred CCeEEEEEEEEeEEcCCCEEEeCCC--C--ceEEecceEEeecCCcccccccCCCCEEEEcCCCCCCCCCEEeCCCCccc
Confidence 9999999999999999999997654 2 35789999999999999999999999999999999999999998887777
Q ss_pred CCCCccCCCceEEEEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHh
Q psy1760 503 LPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRR 582 (793)
Q Consensus 503 l~~~~~~~P~~~~~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrr 582 (793)
++++.+++|++++++.|+++. +..+|.++|.++.++||+|+|..+++++| ++|+|+|||||+|++++|++
T Consensus 397 ~~~~~~~~Pvl~~~i~p~~~~---------d~~kL~~aL~~L~~eDpsl~v~~~~etge-~il~g~GelHLei~~~~L~~ 466 (689)
T TIGR00484 397 LERMEFPEPVISLAVEPKTKA---------DQEKMGIALGKLAEEDPTFRTFTDPETGQ-TIIAGMGELHLDIIVDRMKR 466 (689)
T ss_pred cCCCCCCCceEEEEEEECCcc---------cHHHHHHHHHHHHHhCCEEEEEECCCCCC-EEEEEeeHHHHHHHHHHHHH
Confidence 888889999999999988642 23689999999999999999999999999 99999999999999999997
Q ss_pred c-CceEEEecCEEEEEEe-------c------------------------------------------------------
Q psy1760 583 E-GYELSVSRPRVIFKTL-------N------------------------------------------------------ 600 (793)
Q Consensus 583 e-g~e~~vs~P~V~yre~-------~------------------------------------------------------ 600 (793)
+ |+|+.+++|+|+|||+ .
T Consensus 467 ~~~vev~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~~~g~~~~~~i~~g~~~~~~~~av~~g~~~a 546 (689)
T TIGR00484 467 EFKVEANVGAPQVAYRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEPKGYEFVNEIKGGVIPREYIPAVDKGLQEA 546 (689)
T ss_pred HhCCeeEecCCEEEEeecccCccccccccccccCCCCceEEEEEEEEECCCCCcEEEEeccCCcCCHHHHHHHHHHHHHH
Confidence 5 9999999999999994 0
Q ss_pred ---C----------------------------------------------eeeCeEEEEEEEeCCcchHHHHHHhhccCc
Q psy1760 601 ---G----------------------------------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGG 631 (793)
Q Consensus 601 ---g----------------------------------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG 631 (793)
| .+|||||+++|.||++|+|+||++|++|||
T Consensus 547 ~~~GpL~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg 626 (689)
T TIGR00484 547 MESGPLAGYPVVDIKATLFDGSYHDVDSSEMAFKLAASLAFKEAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRG 626 (689)
T ss_pred HhcCCcCCCceeeEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHhcCC
Confidence 0 489999999999999999999999999999
Q ss_pred eeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEecc
Q psy1760 632 DLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 632 ~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
++.+|++. +++.+|++.+|++|++||.++|+++|+|+|+|++.|+||++++
T Consensus 627 ~i~~~~~~-~~~~~I~a~vP~~e~~g~~~~Lrs~T~G~~~~~~~f~~y~~v~ 677 (689)
T TIGR00484 627 IIEGMEAR-GNVQKIKAEVPLSEMFGYATDLRSFTQGRGTYSMEFLHYGEVP 677 (689)
T ss_pred eEeccccc-CCcEEEEEEeCHHHHhChHHHHHHhcCCceEEEEEeccceeCC
Confidence 99999874 5689999999999999999999999999999999999999998
No 12
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=8.5e-74 Score=681.74 Aligned_cols=448 Identities=31% Similarity=0.475 Sum_probs=404.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccc--cccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~--~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 288 (793)
+||+|+||+|+|||||+++|++.++.+...+.+. ++++|+.+.|++||+|+++....+.|++++++|||||||.+|..
T Consensus 9 rni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~~ 88 (691)
T PRK12739 9 RNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFTI 88 (691)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHHH
Confidence 7999999999999999999999888765544433 58999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhc-----------
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC----------- 357 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~----------- 357 (793)
++.++++.+|++|+|||+.+|++.||+.+|+.+...++|.|+++||+|+..+++...++++++.+....
T Consensus 89 e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~~iPis~~~ 168 (691)
T PRK12739 89 EVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQLPIGAED 168 (691)
T ss_pred HHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEecccccc
Confidence 999999999999999999999999999999999999999999999999998877777777776653200
Q ss_pred -----------------c----------------------------------ccc-------------------------
Q psy1760 358 -----------------A----------------------------------TEE------------------------- 361 (793)
Q Consensus 358 -----------------~----------------------------------~~~------------------------- 361 (793)
. +++
T Consensus 169 ~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~ 248 (691)
T PRK12739 169 DFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAAIRKATI 248 (691)
T ss_pred cceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 0 000
Q ss_pred -ccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcC-------------------CCCCCceEEEEEEeeeC
Q psy1760 362 -QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD-------------------NSNNPLQLQIISLEYSS 421 (793)
Q Consensus 362 -~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~-------------------~~~~p~~~~V~~~~~~~ 421 (793)
..-+||+++||.++. |++.||++|.+++|+|.. ++++||.++|||+.+++
T Consensus 249 ~~~~~Pv~~gSa~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~ 318 (691)
T PRK12739 249 NMEFFPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKIMTDP 318 (691)
T ss_pred cCCEEEEEeccccCCc----------cHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEeeeCC
Confidence 011689999999987 999999999999999842 45789999999999999
Q ss_pred CCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCeEeCCCCCC
Q psy1760 422 YLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPN 501 (793)
Q Consensus 422 ~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~~~~~ 501 (793)
+.|+++++||+||+|++||.|++... + ..++|.+|+.+.|.++.++++|.|||||+|.|++++.+||||++...+.
T Consensus 319 ~~G~i~~~RV~sGtL~~g~~v~~~~~--~--~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~ 394 (691)
T PRK12739 319 FVGRLTFFRVYSGVLESGSYVLNTTK--G--KKERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDTTTGDTLCDEKAPI 394 (691)
T ss_pred CCCeEEEEEEeeeEEcCCCEEEeCCC--C--ceEEecceEEEecCCcccccccCCCCEEEEeCCCcccCCCEEeCCCCcc
Confidence 99999999999999999999987654 3 3689999999999999999999999999999999999999999887777
Q ss_pred CCCCCccCCCceEEEEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHH
Q psy1760 502 GLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMR 581 (793)
Q Consensus 502 ~l~~~~~~~P~~~~~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lr 581 (793)
.++++.+++|++.+++.|.+. . +..+|.++|.++.++||+|+|..++++++ ++++|+|||||+|++++|+
T Consensus 395 ~l~~~~~~~Pv~~~aiep~~~---~------d~~kL~~aL~~L~~eDpsl~v~~~~etge-~il~g~GelHLei~~~rL~ 464 (691)
T PRK12739 395 ILESMEFPEPVISLAVEPKTK---A------DQDKMGLALQKLAEEDPTFRVETDEETGQ-TIISGMGELHLDIIVDRMK 464 (691)
T ss_pred ccCCCCCCCceEEEEEEECCc---c------cHHHHHHHHHHHHHhCCeEEEEEcCCCCC-EEEEEecHHHHHHHHHHHH
Confidence 788888999999999998764 1 24789999999999999999999999999 9999999999999999999
Q ss_pred hc-CceEEEecCEEEEEEe-------c-----------------------------------------------------
Q psy1760 582 RE-GYELSVSRPRVIFKTL-------N----------------------------------------------------- 600 (793)
Q Consensus 582 re-g~e~~vs~P~V~yre~-------~----------------------------------------------------- 600 (793)
++ |+|+.+++|+|+|||+ .
T Consensus 465 ~~f~vev~~s~p~V~yrEti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~~~~~~~~~~~i~~g~~~~~~~~av~~G~~ 544 (691)
T PRK12739 465 REFKVEANVGAPQVAYRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEEGKGFEFVNKIVGGVIPKEYIPAVEKGLE 544 (691)
T ss_pred HHhCCeeEecCCEEEEeeccCCcccccceeccccCCCCceeEEEEEEEECCCCCCcEEEEeccCCcCcHHHHHHHHHHHH
Confidence 74 9999999999999994 0
Q ss_pred -----C----------------------------------------------eeeCeEEEEEEEeCCcchHHHHHHhhcc
Q psy1760 601 -----G----------------------------------------------ELYEPYENLFVDIEEINQGIIMQKLNYR 629 (793)
Q Consensus 601 -----g----------------------------------------------~llEP~~~~~i~vp~e~~G~v~~~l~~r 629 (793)
| .+|||||+++|.||++|+|+||++|++|
T Consensus 545 ~a~~~GpL~g~pv~~v~v~l~d~~~h~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~R 624 (691)
T PRK12739 545 EAMKNGVLAGYPMVDVKATLYDGSYHDVDSSELAFKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRR 624 (691)
T ss_pred HHHhcCCcCCCceeeEEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEEchHhhhhHHHHHHhc
Confidence 0 7899999999999999999999999999
Q ss_pred CceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEecc
Q psy1760 630 GGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 630 rG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
||+++++++. +++..|+|.+|+++++||.++||++|+|+|+|++.|+||++++
T Consensus 625 Rg~i~~~~~~-~~~~~i~a~vP~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~ 677 (691)
T PRK12739 625 RGQIQGMEAR-GGAQIVKAFVPLSEMFGYATDLRSATQGRATFSMEFDHYEEVP 677 (691)
T ss_pred CCeEECcccc-CCcEEEEEEeCHHHhhccHHHHHhhccCceEEEEEeccceECC
Confidence 9999999974 4678999999999999999999999999999999999999998
No 13
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=7.2e-73 Score=676.95 Aligned_cols=458 Identities=30% Similarity=0.482 Sum_probs=396.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee----cCeEEEEecCCCcccc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY----NGTRINIIDTPGHADF 286 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~----~~~~i~iiDTPGh~df 286 (793)
|||+++||+|||||||+++|+..++.+.....-.++++|+.+.|++||+|+.+...++.| +++.++|+|||||.||
T Consensus 21 Rni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df 100 (731)
T PRK07560 21 RNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDF 100 (731)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccCh
Confidence 799999999999999999999998887764433467899999999999999999888877 4789999999999999
Q ss_pred hHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHH-----------hh
Q psy1760 287 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLF-----------DK 355 (793)
Q Consensus 287 ~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~-----------~~ 355 (793)
..++.++++.+|++|+|||+.+|++.||+.+|+.+.+.++|.|+|+||+|+..+++....+++++.| ..
T Consensus 101 ~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 180 (731)
T PRK07560 101 GGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKLIKG 180 (731)
T ss_pred HHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998665444333333322 22
Q ss_pred hcccc-------cccCccEEEeecCCCCccccccc--cc----------------------CCchhhHHHHHhhcCcCcC
Q psy1760 356 LCATE-------EQLDFPVIYTSALHGYANENSKA--RQ----------------------GNMIPLFEAILKYVPVHKD 404 (793)
Q Consensus 356 l~~~~-------~~l~~Pvi~~SA~~g~~~~~~~~--~~----------------------~gi~~Ll~~I~~~lp~p~~ 404 (793)
+.... ...+-.|+++||+.+|+...... .. .-++.||++|.+++|+|..
T Consensus 181 ~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~lPsP~~ 260 (731)
T PRK07560 181 MAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHLPNPIE 260 (731)
T ss_pred hhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhCCChhh
Confidence 22110 01123578999999885431100 00 0013799999999999952
Q ss_pred -------------------------CCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeE
Q psy1760 405 -------------------------NSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQ 459 (793)
Q Consensus 405 -------------------------~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~ 459 (793)
++++||.++|||+.++++.|+++++||++|+|++||.|++.+. + ...+|.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~--~--~~~~v~~ 336 (731)
T PRK07560 261 AQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGA--K--KKNRVQQ 336 (731)
T ss_pred hhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCC--C--CceEehe
Confidence 3467999999999999999999999999999999999999866 2 3579999
Q ss_pred EEEeecCceEEecccCCCcEEEEeccceeecCCeEeCCCCCCCCCCC-ccCCCceEEEEEecCCCCCCcCccccchHHHH
Q psy1760 460 IRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPML-NIDEPTLTINFMVNNSPLAGREGKFITTRQIK 538 (793)
Q Consensus 460 i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~~~~~~l~~~-~~~~P~~~~~~~~~~~p~~g~e~~~~~~~~l~ 538 (793)
|+.+.|.+..++++|.|||||+|.|++++.+||||++.....+++++ .+++|+++++|.|.+. . +..+|.
T Consensus 337 i~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~GdtL~~~~~~~~~~~~~~~p~Pv~~~aI~p~~~---~------d~~kL~ 407 (731)
T PRK07560 337 VGIYMGPEREEVEEIPAGNIAAVTGLKDARAGETVVSVEDMTPFESLKHISEPVVTVAIEAKNP---K------DLPKLI 407 (731)
T ss_pred ehhhhcCCCceeeeECCCCEEEEEcccccccCCEEeCCCccccccccccCCCCeEEEEEEECCH---H------HHHHHH
Confidence 99999999999999999999999999999999999988777777776 4889999999998753 1 247899
Q ss_pred HHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHh-cCceEEEecCEEEEEEe------------------
Q psy1760 539 NRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRR-EGYELSVSRPRVIFKTL------------------ 599 (793)
Q Consensus 539 ~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrr-eg~e~~vs~P~V~yre~------------------ 599 (793)
++|.++.++||+|+|+.++++++ ++|+|+|||||+|++++|++ +|+|+.+++|+|+|||+
T Consensus 408 ~aL~~L~~eDPsl~v~~~~etge-~~l~g~GElHLei~~~rL~~~~~vev~~~~p~V~yrETI~~~~~~~~~~~~~~~~~ 486 (731)
T PRK07560 408 EVLRQLAKEDPTLVVKINEETGE-HLLSGMGELHLEVITYRIKRDYGIEVVTSEPIVVYRETVRGKSQVVEGKSPNKHNR 486 (731)
T ss_pred HHHHHHHhhCCcEEEEEcCCCCC-eEEEcCCHHHHHHHHHHHHHHhCCceEecCCEEEEEEecccCccceEEECCCCceE
Confidence 99999999999999999999999 99999999999999999985 69999999999999995
Q ss_pred -----------c-------------------------------------------C------------------------
Q psy1760 600 -----------N-------------------------------------------G------------------------ 601 (793)
Q Consensus 600 -----------~-------------------------------------------g------------------------ 601 (793)
. |
T Consensus 487 v~l~iePl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~i~~~~~~~~f~~~~~gg~~~~~~~~av~~G~ 566 (731)
T PRK07560 487 FYISVEPLEEEVIEAIKEGEISEDMDKKEAKILREKLIEAGMDKDEAKRVWAIYNGNVFIDMTKGIQYLNEVMELIIEGF 566 (731)
T ss_pred EEEEEEECCHHHHHHHhcCCcccccchHHHHHHHHhhhhcCCchhhhhceeeccCCeEEEECCCCccCHHHHHHHHHHHH
Confidence 1 2
Q ss_pred -------------------------------------------------------eeeCeEEEEEEEeCCcchHHHHHHh
Q psy1760 602 -------------------------------------------------------ELYEPYENLFVDIEEINQGIIMQKL 626 (793)
Q Consensus 602 -------------------------------------------------------~llEP~~~~~i~vp~e~~G~v~~~l 626 (793)
++|||||+++|.+|++|+|+||++|
T Consensus 567 ~~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~g~v~~~L 646 (731)
T PRK07560 567 REAMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQVIPAVRNAIFAAMLTAKPTLLEPIQKVDINVPQDYMGAVTREI 646 (731)
T ss_pred HHHHhcCCccCCceeeEEEEEEEeeecccccccccchHHHHHHHHHHHHHHhCCCEEeecEEEEEEEecHHHhhHHHHHH
Confidence 7899999999999999999999999
Q ss_pred hccCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEecc
Q psy1760 627 NYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 627 ~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
++|||++.+|+. .+++..|+|.+|+++++||.++||++|+|+|+|+++|+||++++
T Consensus 647 ~~rrg~i~~~~~-~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 702 (731)
T PRK07560 647 QGRRGKILDMEQ-EGDMAIIEAEAPVAEMFGFAGEIRSATEGRALWSTEFAGFEPVP 702 (731)
T ss_pred HhcCCeeeeeec-CCCcEEEEEEEehHHhcCCchHHHhhCcCCceEEEEeccceeCC
Confidence 999999999987 45679999999999999999999999999999999999999998
No 14
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=6.6e-72 Score=667.31 Aligned_cols=449 Identities=31% Similarity=0.530 Sum_probs=405.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccc--cccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~--~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 288 (793)
+||+|+||+|+|||||+++|+..++.+...+.+. .+.+|+.+.|+++|+|+......+.|+++.++|||||||.+|..
T Consensus 9 rni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~ 88 (687)
T PRK13351 9 RNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFTG 88 (687)
T ss_pred cEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHHH
Confidence 7999999999999999999999887766554443 47789999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcc----------
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA---------- 358 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~---------- 358 (793)
++.++++.+|++|+|+|+.+++..++..+|+.+...++|+++|+||+|+..+++.+.++++++.|.....
T Consensus 89 ~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~P~~~~~ 168 (687)
T PRK13351 89 EVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQLPIGSED 168 (687)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEEEeccccCC
Confidence 9999999999999999999999999999999999999999999999999999888888888776533100
Q ss_pred ----------------c---------------------------------------------cc----------------
Q psy1760 359 ----------------T---------------------------------------------EE---------------- 361 (793)
Q Consensus 359 ----------------~---------------------------------------------~~---------------- 361 (793)
. +.
T Consensus 169 ~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~~~~~~ 248 (687)
T PRK13351 169 GFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPLREGTR 248 (687)
T ss_pred ceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 0 00
Q ss_pred -ccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcC------------------CCCCCceEEEEEEeeeCC
Q psy1760 362 -QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD------------------NSNNPLQLQIISLEYSSY 422 (793)
Q Consensus 362 -~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~------------------~~~~p~~~~V~~~~~~~~ 422 (793)
..-+||+++||++|. |++.||++|.+++|+|.. ++++|+.++||++.++++
T Consensus 249 ~~~~~PV~~gSA~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~ 318 (687)
T PRK13351 249 SGHLVPVLFGSALKNI----------GIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKVQYDPY 318 (687)
T ss_pred hCCEEEEEecccCcCc----------cHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEeeecCC
Confidence 012799999999998 999999999999999952 457899999999999999
Q ss_pred CceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCeEeCCCCCCC
Q psy1760 423 LGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNG 502 (793)
Q Consensus 423 ~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~~~~~~ 502 (793)
.|+++++||++|+|++||.|++.+. + ..++|.+|+.+.|.++.++++|.||||+++.|++++.+||||++...+..
T Consensus 319 ~G~i~~~RV~sGtl~~g~~v~~~~~--~--~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~ 394 (687)
T PRK13351 319 AGKLTYLRVYSGTLRAGSQLYNGTG--G--KREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKELETGDTLHDSADPVL 394 (687)
T ss_pred CceEEEEEEeEEEEcCCCEEEeCCC--C--CceEeeeEEEEccCCeeECCccCCCCEEEEECcccCccCCEEeCCCCccc
Confidence 9999999999999999999999865 2 36889999999999999999999999999999999999999998876667
Q ss_pred CCCCccCCCceEEEEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHh
Q psy1760 503 LPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRR 582 (793)
Q Consensus 503 l~~~~~~~P~~~~~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrr 582 (793)
++++.+++|++++++.|.+. . +..+|.++|.++.++||+|+|+.++++++ ++++|+|||||+|++++|++
T Consensus 395 ~~~~~~~~pv~~~~Iep~~~----~-----d~~kL~~aL~~L~~eDpsl~v~~~~etge-~ii~g~GelHLei~~~rL~~ 464 (687)
T PRK13351 395 LELLTFPEPVVSLAVEPERR----G-----DEQKLAEALEKLVWEDPSLRVEEDEETGQ-TILSGMGELHLEVALERLRR 464 (687)
T ss_pred cCCCCCCCccEEEEEEECCc----c-----cHHHHHHHHHHHHHhCCeEEEEECCCCCC-EEEEEecHHHHHHHHHHHHH
Confidence 77788899999999998764 1 23689999999999999999999999999 99999999999999999997
Q ss_pred c-CceEEEecCEEEEEEe--c-----------------------------------------------------------
Q psy1760 583 E-GYELSVSRPRVIFKTL--N----------------------------------------------------------- 600 (793)
Q Consensus 583 e-g~e~~vs~P~V~yre~--~----------------------------------------------------------- 600 (793)
+ |+|+.+++|+|+|||+ .
T Consensus 465 ~~~vev~~~~p~V~y~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~~~g~~~~~~~~~~~~~~~~~~ai~~g~~~ 544 (687)
T PRK13351 465 EFKLEVNTGKPQVAYRETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERGAGFIFVSKVVGGAIPEELIPAVEKGIRE 544 (687)
T ss_pred HhCCceEecCCeEEEEeeccccccccceeeeccCCCceEEEEEEEEEECCCCCCcEEeecccCCcCCHHHHHHHHHHHHH
Confidence 5 9999999999999995 0
Q ss_pred ----C----------------------------------------------eeeCeEEEEEEEeCCcchHHHHHHhhccC
Q psy1760 601 ----G----------------------------------------------ELYEPYENLFVDIEEINQGIIMQKLNYRG 630 (793)
Q Consensus 601 ----g----------------------------------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rr 630 (793)
| .+|||||+++|.||++|+|+||++|++||
T Consensus 545 a~~~GpL~~~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rr 624 (687)
T PRK13351 545 ALASGPLAGYPVTDLRVTVLDGKYHPVDSSESAFKAAARKAFLEAFRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRR 624 (687)
T ss_pred HHhcCCCCCCceeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEechHhhhhHHHHHHhCC
Confidence 1 68999999999999999999999999999
Q ss_pred ceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEecc
Q psy1760 631 GDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 631 G~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
|+++++++.+++...|+|.+|+++++||.++||++|+|+|+|+++|+||++++
T Consensus 625 g~i~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~a~~~~~f~~y~~v~ 677 (687)
T PRK13351 625 GRIEGTEPRGDGEVLVKAEAPLAELFGYATRLRSMTKGRGSFTMEFSHFDPVP 677 (687)
T ss_pred cEEeceecCCCcEEEEEEEECHHHhhChHHHHHhhcCCceEEEEEeccceeCC
Confidence 99999997544444599999999999999999999999999999999999998
No 15
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=1.4e-70 Score=654.83 Aligned_cols=443 Identities=29% Similarity=0.485 Sum_probs=400.0
Q ss_pred eecccCCcceehhhhhhccCccccccccc--cccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHHHH
Q psy1760 216 IAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERI 293 (793)
Q Consensus 216 iG~~~~GKSTLv~~Ll~~~~~~~~~~~v~--~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~~~ 293 (793)
+||+|+|||||+++|+..++.+...+.+. .+++|+...|++||+|+......+.|+++.+++||||||.+|..++.++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 59999999999999999998877655443 4889999999999999999999999999999999999999999999999
Q ss_pred hhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhc----------------
Q psy1760 294 LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC---------------- 357 (793)
Q Consensus 294 l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~---------------- 357 (793)
++.+|++|+|+|+.++...++..+|+.+...++|.++|+||+|+..++..++++++.+.+....
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~~ 160 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTGV 160 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCceEE
Confidence 9999999999999999999999999999999999999999999988877777777776543100
Q ss_pred -------------------------------------------ccc--------------------------cccCccEE
Q psy1760 358 -------------------------------------------ATE--------------------------EQLDFPVI 368 (793)
Q Consensus 358 -------------------------------------------~~~--------------------------~~l~~Pvi 368 (793)
.++ ...-+||+
T Consensus 161 id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~Pv~ 240 (668)
T PRK12740 161 VDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIVPVF 240 (668)
T ss_pred EECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 000 00137999
Q ss_pred EeecCCCCcccccccccCCchhhHHHHHhhcCcCcC-----------------CCCCCceEEEEEEeeeCCCceEEEEEE
Q psy1760 369 YTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD-----------------NSNNPLQLQIISLEYSSYLGKIGIGRI 431 (793)
Q Consensus 369 ~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~-----------------~~~~p~~~~V~~~~~~~~~G~v~~grV 431 (793)
++||++|. |++.||++|.+++|+|.. ++++|+.++|+++.++++.|+++++||
T Consensus 241 ~gSA~~~~----------Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV 310 (668)
T PRK12740 241 CGSALKNK----------GVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRV 310 (668)
T ss_pred eccccCCc----------cHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEE
Confidence 99999998 999999999999999952 557899999999999999999999999
Q ss_pred eecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCeEeCCCCCCCCCCCccCCC
Q psy1760 432 LSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEP 511 (793)
Q Consensus 432 ~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~~~~~~l~~~~~~~P 511 (793)
++|+|++||.|++.+. ....+|.+|+.++|.+++++++|.||||+++.|++++.+||||++...+.+++++++++|
T Consensus 311 ~sG~L~~g~~v~~~~~----~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~~~~~~~~P 386 (668)
T PRK12740 311 YSGTLKKGDTLYNSGT----GKKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLCDKGDPILLEPMEFPEP 386 (668)
T ss_pred eeeEEcCCCEEEeCCC----CCcEEecceeeecCCCccccCccCCCCEEEEeccCccCCCCEEeCCCCccccCCCCCCCc
Confidence 9999999999998765 235889999999999999999999999999999999999999998877778888889999
Q ss_pred ceEEEEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHhc-CceEEEe
Q psy1760 512 TLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVS 590 (793)
Q Consensus 512 ~~~~~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrre-g~e~~vs 590 (793)
++++++.|++. + +..+|.++|.++.++||+|+|..++++++ ++++|+|||||+|++++||++ |+|+.++
T Consensus 387 ~~~~~i~p~~~---~------d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge-~~l~g~GelhLei~~~~L~~~~~~~v~~~ 456 (668)
T PRK12740 387 VISLAIEPKDK---G------DEEKLSEALGKLAEEDPTLRVERDEETGQ-TILSGMGELHLDVALERLKREYGVEVETG 456 (668)
T ss_pred ceEEEEEECCc---c------hHHHHHHHHHHHHHhCCeEEEEECCCCCC-EEEEEecHHHHHHHHHHHHHHhCceeEec
Confidence 99999998764 1 24789999999999999999999989999 999999999999999999975 9999999
Q ss_pred cCEEEEEEe--c---------------------------------------------------------------C----
Q psy1760 591 RPRVIFKTL--N---------------------------------------------------------------G---- 601 (793)
Q Consensus 591 ~P~V~yre~--~---------------------------------------------------------------g---- 601 (793)
+|+|+|||+ + |
T Consensus 457 ~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~ep~~~~~~~~f~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g 536 (668)
T PRK12740 457 PPQVPYRETIRKKAEGHGRHKKQSGGHGQFGDVWLEVEPLPRGEGFEFVDKVVGGAVPRQYIPAVEKGVREALEKGVLAG 536 (668)
T ss_pred CCeeEEeeccCCCccccceeccccCCCCceEEEEEEEEECCCCCceEEeecccCCCccHHHHHHHHHHHHHHHhcCCcCC
Confidence 999999994 0 2
Q ss_pred ------------------------------------------eeeCeEEEEEEEeCCcchHHHHHHhhccCceeeeeeec
Q psy1760 602 ------------------------------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEIN 639 (793)
Q Consensus 602 ------------------------------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~ 639 (793)
.+|||||+++|.+|++|+|+||++|++|||++.+++..
T Consensus 537 ~p~~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~ 616 (668)
T PRK12740 537 YPVVDVKVTLTDGSYHSVDSSEMAFKIAARLAFREALPKAKPVLLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESR 616 (668)
T ss_pred CceeeEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHhcCCeeecceEEEEEEechhhhhhHHHHHHhCCCeEeccccC
Confidence 58999999999999999999999999999999999875
Q ss_pred cCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEecc
Q psy1760 640 EKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 640 ~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
+++ ++|+|.+|+++++||.++||++|+|+|+|++.|+||++++
T Consensus 617 ~~~-~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~~~ 659 (668)
T PRK12740 617 GGG-DVVRAEVPLAEMFGYATDLRSLTQGRGSFSMEFSHYEEVP 659 (668)
T ss_pred CCC-EEEEEEcCHHHhhchHHHHHHhcCCeEEEEEEecccccCC
Confidence 444 8999999999999999999999999999999999999998
No 16
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=5.1e-70 Score=650.79 Aligned_cols=458 Identities=32% Similarity=0.513 Sum_probs=394.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeE----EeecCeEEEEecCCCcccc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCS----IEYNGTRINIIDTPGHADF 286 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~----~~~~~~~i~iiDTPGh~df 286 (793)
+||+++||+|+|||||+++|+..+|.+.+...-..+.+|+.+.|++||+|+.+.... ++|+++.++|||||||.+|
T Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f 99 (720)
T TIGR00490 20 RNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDF 99 (720)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcccc
Confidence 899999999999999999999988887664333457789999999999999887655 6778999999999999999
Q ss_pred hHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhc--------c
Q psy1760 287 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC--------A 358 (793)
Q Consensus 287 ~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~--------~ 358 (793)
..++.++++.+|++|+|+|+.+|+..+|..+|+.+...++|.++|+||+|+..+++....+++++.|...- .
T Consensus 100 ~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 179 (720)
T TIGR00490 100 GGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIITEVNKLIKA 179 (720)
T ss_pred HHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999988877777777766654310 0
Q ss_pred --c--------ccccCccEEEeecCCCCccccc---------c--------cccCC-------chhhHHHHHhhcCcCcC
Q psy1760 359 --T--------EEQLDFPVIYTSALHGYANENS---------K--------ARQGN-------MIPLFEAILKYVPVHKD 404 (793)
Q Consensus 359 --~--------~~~l~~Pvi~~SA~~g~~~~~~---------~--------~~~~g-------i~~Ll~~I~~~lp~p~~ 404 (793)
. ....+.++.++|++.+|+..-+ . ....+ ++.||++|.+++|+|..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~~~Lld~i~~~lPsP~~ 259 (720)
T TIGR00490 180 MAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLDMVIRHLPSPIE 259 (720)
T ss_pred cCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHhCCChhh
Confidence 0 0001234566777777532100 0 00111 46789999999999941
Q ss_pred -------------------------CCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeE
Q psy1760 405 -------------------------NSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQ 459 (793)
Q Consensus 405 -------------------------~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~ 459 (793)
++++||.++|+++.++++.|+++++||+||+|++||.|++.+. ....+|.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~----~~~~kv~~ 335 (720)
T TIGR00490 260 AQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDR----KAKARIQQ 335 (720)
T ss_pred hhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCC----CCeeEeeE
Confidence 2357899999999999999999999999999999999999876 34689999
Q ss_pred EEEeecCceEEecccCCCcEEEEeccceeecCCeEeCCCCC-CCCCCC-ccCCCceEEEEEecCCCCCCcCccccchHHH
Q psy1760 460 IRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKP-NGLPML-NIDEPTLTINFMVNNSPLAGREGKFITTRQI 537 (793)
Q Consensus 460 i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~~~~-~~l~~~-~~~~P~~~~~~~~~~~p~~g~e~~~~~~~~l 537 (793)
|+.+.|.+..++++|.|||||+|.|++++.+|||||+.+.+ .+++++ .+++|++++++.|.+. + +..+|
T Consensus 336 l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~---~------d~~kL 406 (720)
T TIGR00490 336 VGVYMGPERVEVDEIPAGNIVAVIGLKDAVAGETICTTVENITPFESIKHISEPVVTVAIEAKNT---K------DLPKL 406 (720)
T ss_pred EEEeccCCccCccEECCCCEEEEECccccccCceeecCCcccccCcccccCCCceEEEEEEECCH---H------HHHHH
Confidence 99999999999999999999999999999999999987644 345655 4789999999998764 1 34689
Q ss_pred HHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHhc-CceEEEecCEEEEEEe-----------------
Q psy1760 538 KNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFKTL----------------- 599 (793)
Q Consensus 538 ~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrre-g~e~~vs~P~V~yre~----------------- 599 (793)
.++|.++.++||+|+|+.+++++| ++|+|||||||+|++++|+|+ |+|+.+++|+|+|||+
T Consensus 407 ~~aL~~L~~eDPsl~v~~d~etge-~il~g~GElHLei~~~rL~~~~~vev~~~~P~V~YrETi~~~~~~~~~~~~~~~~ 485 (720)
T TIGR00490 407 IEVLRQVAKEDPTVHVEINEETGE-HLISGMGELHLEIIVEKIREDYGLDVETSPPIVVYRETVTGTSPVVEGKSPNKHN 485 (720)
T ss_pred HHHHHHHHhhCCeEEEEECCCCCC-eEEEEccceeHHHHHHHHHHHhCCceeecCCEEEEEEeccccccceEEEcCCCcE
Confidence 999999999999999999999999 999999999999999999975 9999999999999996
Q ss_pred -----------c-----------------------------------------C--------------------------
Q psy1760 600 -----------N-----------------------------------------G-------------------------- 601 (793)
Q Consensus 600 -----------~-----------------------------------------g-------------------------- 601 (793)
. +
T Consensus 486 ~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~gg~i~~~~~~av~~G~~ 565 (720)
T TIGR00490 486 RFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRRLLIEAGMDSEEAARVEEYYEGNLFINMTRGIQYLDETKELILEGFR 565 (720)
T ss_pred EEEEEEEECCcchhhhhhcccccccccchHHHHHHHHhcCCchhhhcCEEEecCCeEEEECCCCCCCHHHHHHHHHHHHH
Confidence 1 2
Q ss_pred ------------------------------------------------------eeeCeEEEEEEEeCCcchHHHHHHhh
Q psy1760 602 ------------------------------------------------------ELYEPYENLFVDIEEINQGIIMQKLN 627 (793)
Q Consensus 602 ------------------------------------------------------~llEP~~~~~i~vp~e~~G~v~~~l~ 627 (793)
+||||||+++|.+|++|+|+||++|+
T Consensus 566 ~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~~ei~~p~~~~g~v~~~L~ 645 (720)
T TIGR00490 566 EAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRGPAQVIPAVRSGIFAAMMQAKPVLLEPYQKVFINVPQDMMGAATREIQ 645 (720)
T ss_pred HHHHcCCcCCCcccceEEEEEeeccccccccCccchHHHHHHHHHHHHHHhCCCeEecceEEEEEEccHHHHhHHHHHHh
Confidence 89999999999999999999999999
Q ss_pred ccCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEecc
Q psy1760 628 YRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 628 ~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
+|||++++|+. .++...|++.+|+++++||.++||++|+|+|+|+++|+||++++
T Consensus 646 ~RRg~i~~~~~-~~~~~~I~A~vP~~e~fgy~~~Lrs~T~G~a~~~~~f~~y~~vp 700 (720)
T TIGR00490 646 NRRGQILEMKQ-EGDMVTIIAKAPVAEMFGFAGAIRGATSGRCLWSTEHAGFELVP 700 (720)
T ss_pred hCCceeeeecc-CCCcEEEEEEEehHHhcCCcHHHHhhCCCCceEEEEecccccCC
Confidence 99999999986 45678999999999999999999999999999999999999998
No 17
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=1.8e-68 Score=645.63 Aligned_cols=462 Identities=26% Similarity=0.416 Sum_probs=389.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec----------------CeE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN----------------GTR 274 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~----------------~~~ 274 (793)
+||+|+||+|||||||+++|+..++.+........+++|..+.|++||+|+.+....+.|. ++.
T Consensus 20 rni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
T PLN00116 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYL 99 (843)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceE
Confidence 7999999999999999999999998877655555678999999999999999998888884 788
Q ss_pred EEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCC-------C----CChh
Q psy1760 275 INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS-------N----ARPE 343 (793)
Q Consensus 275 i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~-------~----a~~~ 343 (793)
|||||||||.||..++.++++.+|++|+||||.+|++.||+.+|+.+...++|+|+|+||+|+. . +++.
T Consensus 100 inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~~~~~~~~ 179 (843)
T PLN00116 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFS 179 (843)
T ss_pred EEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 3 5677
Q ss_pred hhHhHHHHHHhhhccc---cc---ccCccEEEeecCCCCccc--------------------------------------
Q psy1760 344 WVVDATFDLFDKLCAT---EE---QLDFPVIYTSALHGYANE-------------------------------------- 379 (793)
Q Consensus 344 ~v~~~i~~~~~~l~~~---~~---~l~~Pvi~~SA~~g~~~~-------------------------------------- 379 (793)
.++++++..+..+... .. ...--|+++|+..||...
T Consensus 180 ~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~~~~~~~ 259 (843)
T PLN00116 180 RVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTT 259 (843)
T ss_pred HHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCCCceEEe
Confidence 8888887443332211 00 001114555654442100
Q ss_pred -c----------------c-----c-----------c--cc--------------------------CCchhhHHHHHhh
Q psy1760 380 -N----------------S-----K-----------A--RQ--------------------------GNMIPLFEAILKY 398 (793)
Q Consensus 380 -~----------------~-----~-----------~--~~--------------------------~gi~~Ll~~I~~~ 398 (793)
+ + + . .. .+.+.||+.|.++
T Consensus 260 ~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~~s~~Lld~i~~~ 339 (843)
T PLN00116 260 KNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLPASDALLEMIIFH 339 (843)
T ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcCChHHHHHHHHHh
Confidence 0 0 0 0 00 0227789999999
Q ss_pred cCcCcC-------------------------CCCCCceEEEEEEeeeCCCce-EEEEEEeecccccCCEEEEecCC--CC
Q psy1760 399 VPVHKD-------------------------NSNNPLQLQIISLEYSSYLGK-IGIGRILSGRIKSLQDVVIMNGP--DD 450 (793)
Q Consensus 399 lp~p~~-------------------------~~~~p~~~~V~~~~~~~~~G~-v~~grV~sG~lk~G~~v~~~~~~--~g 450 (793)
+|+|.. ++++|+.++|||+..+++.|+ ++++|||||+|+.||.|++.+.+ .+
T Consensus 340 lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~~~n~~~~ 419 (843)
T PLN00116 340 LPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIMGPNYVPG 419 (843)
T ss_pred CCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEeCCCCCCC
Confidence 999841 235689999999999999898 99999999999999999876442 11
Q ss_pred CC---CceeEeEEEEeecCceEEecccCCCcEEEEeccceeec-CCeEeCCC--CCCCCCCCccC-CCceEEEEEecCCC
Q psy1760 451 KP---NKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICI-GSTICDPS--KPNGLPMLNID-EPTLTINFMVNNSP 523 (793)
Q Consensus 451 ~~---~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~i-Gdtl~~~~--~~~~l~~~~~~-~P~~~~~~~~~~~p 523 (793)
+. ..++|.+|+.+.|.++.++++|.|||||+|.|+++..+ |||||+.. .+.+++++.++ +|++++++.|.+.
T Consensus 420 ~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~~~~~~~~Pv~~~aIeP~~~- 498 (843)
T PLN00116 420 EKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIKAMKFSVSPVVRVAVQCKNA- 498 (843)
T ss_pred CccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCccccccccCCCceEEEEEEECCh-
Confidence 11 12588999999999999999999999999999988655 99999876 55667788888 9999999998753
Q ss_pred CCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHh-c--CceEEEecCEEEEEEe-
Q psy1760 524 LAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRR-E--GYELSVSRPRVIFKTL- 599 (793)
Q Consensus 524 ~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrr-e--g~e~~vs~P~V~yre~- 599 (793)
. +..+|.++|.++.++||+|++.. ++++| ++|+|||||||+|++++|++ + |+|+.+++|+|+|||+
T Consensus 499 --~------d~~kL~~aL~~L~~eDPsl~v~~-~etge-~il~g~GElHLEi~~~rL~~~f~~~vev~~s~p~V~yrETI 568 (843)
T PLN00116 499 --S------DLPKLVEGLKRLAKSDPMVQCTI-EESGE-HIIAGAGELHLEICLKDLQDDFMGGAEIKVSDPVVSFRETV 568 (843)
T ss_pred --h------hHHHHHHHHHHHHHhCCCeEEEE-cCCCC-EEEEEccHHHHHHHHHHHHHHhhCCCcEEEcCCeEEEEecc
Confidence 1 24789999999999999999965 78999 99999999999999999995 7 9999999999999995
Q ss_pred ----------------------------c---------------------------------------------C-----
Q psy1760 600 ----------------------------N---------------------------------------------G----- 601 (793)
Q Consensus 600 ----------------------------~---------------------------------------------g----- 601 (793)
+ |
T Consensus 569 ~~~~~~~~~~~~~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~gp~~~~~~~~~ 648 (843)
T PLN00116 569 LEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGPETTGPNMVV 648 (843)
T ss_pred cccccCcEEEecCCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeeecCCCCCceEEE
Confidence 2 0
Q ss_pred ---------------------------------------------------------------------------eeeCe
Q psy1760 602 ---------------------------------------------------------------------------ELYEP 606 (793)
Q Consensus 602 ---------------------------------------------------------------------------~llEP 606 (793)
+||||
T Consensus 649 ~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~Al~~a~p~LlEP 728 (843)
T PLN00116 649 DMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYASQLTAKPRLLEP 728 (843)
T ss_pred ECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHHHHhCCCEEeec
Confidence 89999
Q ss_pred EEEEEEEeCCcchHHHHHHhhccCceeeeeeeccC-CeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEecc
Q psy1760 607 YENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEK-ERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 607 ~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~-~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
||+++|.||++|+|+||++|++|||.+++++..++ ...+|++.+|+++++||.++||++|+|+|+|+++|+||++++
T Consensus 729 i~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~~f~~y~~v~ 806 (843)
T PLN00116 729 VYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMS 806 (843)
T ss_pred eeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEEEeceeEECC
Confidence 99999999999999999999999999999987433 348899999999999999999999999999999999999998
No 18
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=1.9e-67 Score=635.62 Aligned_cols=461 Identities=27% Similarity=0.390 Sum_probs=389.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec----------CeEEEEecC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN----------GTRINIIDT 280 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~----------~~~i~iiDT 280 (793)
+||+|+||+|||||||+++|+..++.+.+...-..+++|+.+.|++||+|+.+....+.|. ++.|+|+||
T Consensus 20 rni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDt 99 (836)
T PTZ00416 20 RNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDS 99 (836)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcC
Confidence 7999999999999999999999988876654444677899999999999999988888886 788999999
Q ss_pred CCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCC----C-------CChhhhHhHH
Q psy1760 281 PGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS----N-------ARPEWVVDAT 349 (793)
Q Consensus 281 PGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~----~-------a~~~~v~~~i 349 (793)
|||.||.+++.++++.+|+||+||||.+|+++||+.+|+.+...++|.|+|+||+|+. + +++..+++++
T Consensus 100 PG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~~~~~~ii~~i 179 (836)
T PTZ00416 100 PGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIYQNFVKTIENV 179 (836)
T ss_pred CCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 4 6788888888
Q ss_pred HHHHhhhcccc------cccCccEEEeecCCCCccc--------------------------------------------
Q psy1760 350 FDLFDKLCATE------EQLDFPVIYTSALHGYANE-------------------------------------------- 379 (793)
Q Consensus 350 ~~~~~~l~~~~------~~l~~Pvi~~SA~~g~~~~-------------------------------------------- 379 (793)
++.+..+.... ......|.+.|+..||+..
T Consensus 180 n~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~~~~~~~~~~~~~ 259 (836)
T PTZ00416 180 NVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAKTKKWIKDETNAQ 259 (836)
T ss_pred HHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCCCCEEEeccCCcc
Confidence 87775332110 0111124445554322200
Q ss_pred -------------cc-----c------c-------c---------c--CC---------------chhhHHHHHhhcCcC
Q psy1760 380 -------------NS-----K------A-------R---------Q--GN---------------MIPLFEAILKYVPVH 402 (793)
Q Consensus 380 -------------~~-----~------~-------~---------~--~g---------------i~~Ll~~I~~~lp~p 402 (793)
++ + + . . .. ++.||++|.+++|+|
T Consensus 260 ~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~~~~~Pv~~~Lld~i~~~lPsP 339 (836)
T PTZ00416 260 GKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVMQKWLPAADTLLEMIVDHLPSP 339 (836)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHHHHHhchHHHHHHHHHHhCCCh
Confidence 00 0 0 0 0 00 167899999999999
Q ss_pred cC-------------------------CCCCCceEEEEEEeeeCCCce-EEEEEEeecccccCCEEEEecCCCCCCCce-
Q psy1760 403 KD-------------------------NSNNPLQLQIISLEYSSYLGK-IGIGRILSGRIKSLQDVVIMNGPDDKPNKA- 455 (793)
Q Consensus 403 ~~-------------------------~~~~p~~~~V~~~~~~~~~G~-v~~grV~sG~lk~G~~v~~~~~~~g~~~~~- 455 (793)
.. ++++|+.++|+|+..+++.|+ ++++|||||+|+.||.|++.+.+.....++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v~~~~~~~~~~e~ 419 (836)
T PTZ00416 340 KEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQGPNYVPGKKED 419 (836)
T ss_pred hHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEEeCCCCCCCCccc
Confidence 41 235689999999999999999 899999999999999998765421111122
Q ss_pred ----eEeEEEEeecCceEEecccCCCcEEEEeccce--eecCCeEeCCCCCCCCCCCccC-CCceEEEEEecCCCCCCcC
Q psy1760 456 ----KINQIRVFKGLDRVLVNEALSGDIVLITGIEE--ICIGSTICDPSKPNGLPMLNID-EPTLTINFMVNNSPLAGRE 528 (793)
Q Consensus 456 ----kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~--i~iGdtl~~~~~~~~l~~~~~~-~P~~~~~~~~~~~p~~g~e 528 (793)
+|.+|+.+.|.+..++++|.|||||+|.|+++ ..+| ||++...+.+++++.++ +|++++++.|.+. .
T Consensus 420 ~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tg-TL~~~~~~~~l~~i~~~~~Pv~~vaIep~~~---~-- 493 (836)
T PTZ00416 420 LFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSG-TITTSETAHNIRDMKYSVSPVVRVAVEPKNP---K-- 493 (836)
T ss_pred chheecceeEEecCCCceECcEECCCCEEEEEecccceecce-eecCCCCcccccccccCCCCeEEEEEEECCH---H--
Confidence 59999999999999999999999999999998 7899 99988777777788786 9999999998753 1
Q ss_pred ccccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHh-c-CceEEEecCEEEEEEe-------
Q psy1760 529 GKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRR-E-GYELSVSRPRVIFKTL------- 599 (793)
Q Consensus 529 ~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrr-e-g~e~~vs~P~V~yre~------- 599 (793)
+..+|.++|.++.++||+|++.. ++++| ++|+||||+||++++++|++ + |+|+.+|+|+|+|||+
T Consensus 494 ----d~~kL~~aL~~L~~eDPsl~~~~-~etgE-~il~g~GElHLei~l~~L~~~f~~vev~~s~P~V~yrETI~~~s~~ 567 (836)
T PTZ00416 494 ----DLPKLVEGLKRLAKSDPLVVCTT-EESGE-HIVAGCGELHVEICLKDLEDDYANIDIIVSDPVVSYRETVTEESSQ 567 (836)
T ss_pred ----HHHHHHHHHHHHHhhCCceEEEE-cCCCC-eEEEeCcHhHHHHHHHHHHHHhcCcceEecCCEEEEEEEecccccc
Confidence 34689999999999999999976 78999 99999999999999999996 5 9999999999999996
Q ss_pred ----------------------c-------------------------------------------------------C-
Q psy1760 600 ----------------------N-------------------------------------------------------G- 601 (793)
Q Consensus 600 ----------------------~-------------------------------------------------------g- 601 (793)
+ +
T Consensus 568 ~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~g~nil~~~~~~~ 647 (836)
T PTZ00416 568 TCLSKSPNKHNRLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFGPENKGPNVLVDVTKGV 647 (836)
T ss_pred eEEEECCCCCeeEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeeccCCCCCCcEEEecCCcc
Confidence 1 1
Q ss_pred ---------------------------------------------------------------------eeeCeEEEEEE
Q psy1760 602 ---------------------------------------------------------------------ELYEPYENLFV 612 (793)
Q Consensus 602 ---------------------------------------------------------------------~llEP~~~~~i 612 (793)
+||||||+++|
T Consensus 648 ~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~veI 727 (836)
T PTZ00416 648 QYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACELTASPRLLEPMFLVDI 727 (836)
T ss_pred cchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEE
Confidence 78999999999
Q ss_pred EeCCcchHHHHHHhhccCceeeeeeeccCC-eEEEEEEechhhhcchHHHHcccccceEEEEeEecceEecc
Q psy1760 613 DIEEINQGIIMQKLNYRGGDLKNIEINEKE-RVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 613 ~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~-~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
.||++|+|+||++|++|||+++++++.+++ ..+|++.+|+++++||.++||++|+|+|+|++.|+||++++
T Consensus 728 ~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~~F~~y~~vp 799 (836)
T PTZ00416 728 TAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQCVFDHWQVVP 799 (836)
T ss_pred EEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEEEeccEEECC
Confidence 999999999999999999999999885333 48999999999999999999999999999999999999999
No 19
>PRK00020 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=2.1e-66 Score=528.87 Aligned_cols=214 Identities=44% Similarity=0.719 Sum_probs=207.3
Q ss_pred CCCCCCCCcceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEE
Q psy1760 1 MILPSISPVSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHL 80 (793)
Q Consensus 1 ~~~~~~~~~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~ 80 (793)
|...+.++++|||+||||.||||||||+++||.++.|||||+|||||+||||||||+|+|||+++|+++.+|+|+++++|
T Consensus 1 ~~~~~~~~~~Gil~vdKP~G~TS~dvv~~vkr~~~~kKvGH~GTLDP~AtGvLiv~iG~aTKl~~~l~~~~K~Y~a~~~l 80 (244)
T PRK00020 1 MAKRRGLALDGVLLLDKPVGLSSNHALQRAKRTVDAAKAGHTGTLDPFATGLLVCCMGRATKISGRMLEADKTYQATLQF 80 (244)
T ss_pred CCCCCCCCCCeEEEEecCCCCCHHHHHHHHHHHhCCCCCCcCCcCCCcCeeEEEEEECHHhhhhHHhccCCcEEEEEEEe
Confidence 77788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccCCCcceEeeccCC--CCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEE
Q psy1760 81 GITTETGDIEGKIIDFNKN--IPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKIT 158 (793)
Q Consensus 81 g~~t~t~d~~g~~~~~~~~--~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~ 158 (793)
|.+|||+|++|+|+++++. .++|++++++++.+|.|++.|+||+|||+|+||+|||+|||+|+++++++|+|+||+++
T Consensus 81 G~~TdT~D~~G~v~~~~~~~~~~it~e~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ 160 (244)
T PRK00020 81 GEETDSGDLTGHIVARAPDGFAGVEEAALRDVLSRFVGTIEQIPPMYSALKRDGKPLYEYARAGIELDRPPRQVTIRHIE 160 (244)
T ss_pred CCcccCCCCCCcEEEeccCccCCCCHHHHHHHHHhccCeEEEeCChhheEEECCeEHHHHHhCCcccccCCeeEEEEEEE
Confidence 9999999999999998763 47899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCceeeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760 159 IIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA 214 (793)
Q Consensus 159 ~~d~~~~~~~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa 214 (793)
+++|+.+.+.|++.||+|||||+|++|||..|++++|+..|||+++|+|.++..+.
T Consensus 161 ll~~~~~~~~~~v~cSkGTYIRSL~~DiG~~Lg~~a~l~~LrRt~~G~f~l~~a~~ 216 (244)
T PRK00020 161 LLSFSGMQAQIDVACSKGTYIRTLAQDIGRALGCHAHLAALRRTHVGPFSLDRAVT 216 (244)
T ss_pred EEEEeCCEEEEEEEECCCcCHHHHHHHHHHHHCCCEEEEEEEeeEECCCChHHcCC
Confidence 99999999999999999999999999999999999999999999999999887664
No 20
>PRK04642 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=4.3e-66 Score=543.15 Aligned_cols=213 Identities=43% Similarity=0.693 Sum_probs=204.9
Q ss_pred CCCCCCcceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEce
Q psy1760 3 LPSISPVSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGI 82 (793)
Q Consensus 3 ~~~~~~~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~ 82 (793)
...-+++||||+||||.||||||||+++||+|+.|||||+|||||+||||||||+|+|||+++|+++.+|+|+|+++||.
T Consensus 3 ~~~~~~m~Gil~i~KP~G~TS~dvv~~vrr~~~~kKvGH~GTLDP~AtGvL~v~~G~aTkl~~~l~~~~K~Y~a~~~lG~ 82 (300)
T PRK04642 3 RIAYRRLDGILLLDKPAGLSSNNALQAARRLLRAEKGGHTGSLDPLATGLLPLCFGEATKIAGLLLGSAKAYDAEIVLGV 82 (300)
T ss_pred CCCCCCcCeEEEEecCCCCCHHHHHHHHHHHhCCCcccCCCccCCcCeeeEEEEEChhhhhhHHhcCCCcEEEEEEEECc
Confidence 33446799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEee
Q psy1760 83 TTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDY 162 (793)
Q Consensus 83 ~t~t~d~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~ 162 (793)
+|||+|++|+|+++.+..++|.+++++++++|.|++.|+||+|||+|+||+|||+|||+|++|++++|+|+||++++++|
T Consensus 83 ~TdT~D~~G~v~~~~~~~~~~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkrlY~lAR~G~~ve~~~R~v~I~~~~ll~~ 162 (300)
T PRK04642 83 TTDTDDADGQVLRERPVPDLSAAALQAALAPLIGRIRQRAPIYSALKQGGEPLYAKARRGEVIEAPVREVEVHAIEVLGY 162 (300)
T ss_pred cccCcCCCCCEEEecCCCCCCHHHHHHHHHHCCCcEEEeCCchHeEeECCeeHHHHHhCCCccccCcEEEEEEEEEEEEE
Confidence 99999999999998877778999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhcccccccccceee
Q psy1760 163 TIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAI 215 (793)
Q Consensus 163 ~~~~~~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIaI 215 (793)
+.+.+.|++.||+|||||||++|||..|+|++|+..|||+++|+|.++..+.+
T Consensus 163 ~~~~~~~~v~cskGTYIRSL~~Dig~~Lg~~a~m~~L~Rt~~G~f~~~~a~~l 215 (300)
T PRK04642 163 AAPRLRLRVTCGSGTYIRSLARDLGEVLGCGAHIAALRRLWVEPFRAPQMITL 215 (300)
T ss_pred eCCEEEEEEEeCCCcCHHHHHHHHHHHhCCCEEEEEeEeeEECCcchHHCccH
Confidence 98999999999999999999999999999999999999999999988776653
No 21
>PRK01851 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=5.5e-65 Score=536.35 Aligned_cols=212 Identities=53% Similarity=0.861 Sum_probs=203.8
Q ss_pred CCCCCCC----cceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEE
Q psy1760 2 ILPSISP----VSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAI 77 (793)
Q Consensus 2 ~~~~~~~----~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~ 77 (793)
+.|+++. +||||+||||.||||||||+++||+|+.|||||+|||||+||||||||+|+|||+++|+++.+|+|+|+
T Consensus 4 ~~~~~~~~~~~~~Gil~i~KP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~l~~~~K~Y~~~ 83 (303)
T PRK01851 4 AAPRPRVPRRPVDGVLLLDKPLGLSSNDALQRAKRLLRAKKAGHTGTLDPLATGLLPLCFGEATKFSQDLLDADKTYEAT 83 (303)
T ss_pred CCCCCCCCCCCCCeEEEEeCCCCCCHHHHHHHHHHHhCcccCCCCCCCCCCCceEEEEEECHHHhhhHHhcccCeEEEEE
Confidence 3466644 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEceeeccCCCcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEE
Q psy1760 78 IHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKI 157 (793)
Q Consensus 78 ~~~g~~t~t~d~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~ 157 (793)
++||.+|||+|++|+|+++++.. +|.+++++++++|+|++.|+||+|||+|+||+|||+|||+|++|++++|+++||++
T Consensus 84 ~~lG~~TdT~D~~G~v~~~~~~~-~t~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~R~v~I~~i 162 (303)
T PRK01851 84 LRLGVRTSTGDAEGEVLATRPVD-CDPAALEAALARFTGEIRQVPPMYSALKKDGKPLYEYARAGITVEREARDVTIHAL 162 (303)
T ss_pred EEECCccCCCCCCCCEEeecCCC-CCHHHHHHHHHhccCeeeeeCCchheEeeCCeeHHHHHhCCCccccCCcceEEEEE
Confidence 99999999999999999987765 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCceeeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760 158 TIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA 214 (793)
Q Consensus 158 ~~~d~~~~~~~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa 214 (793)
++++|+.+.+.|++.||+|||||||++|||..|++++|+..|||+++|+|.++..+.
T Consensus 163 ~ll~~~~~~~~~~v~cskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~~~~a~~ 219 (303)
T PRK01851 163 DLLACDLPDVTIRVTCSKGTYIRTLAEDIGEALGCGAHLTALRRTGVGGLTLEQAVT 219 (303)
T ss_pred EEEEEeCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCCchHHcCC
Confidence 999999999999999999999999999999999999999999999999998876654
No 22
>TIGR00431 TruB tRNA pseudouridine 55 synthase. TruB, the tRNA pseudouridine 55 synthase, converts uracil to pseudouridine in the T loop (not the anticodon loop - beware mis-annotation in Swiss-Prot) of most tRNAs of all three domains of life. This model is built on a seed alignment of bacterial proteins only. Saccharomyces cerevisiae protein YNL292w (Pus4) has been shown to be the pseudouridine 55 synthase of both cytosolic and mitochondrial compartments, active at no other position on tRNA and the only enzyme active at that position in the species. A distinct yeast protein YLR175w, (centromere/microtubule-binding protein CBF5) is an rRNA pseudouridine synthase, and the archaeal set is much more similar to CBF5 than to Pus4. It is unclear whether the archaeal proteins found by this model are tRNA pseudouridine 55 synthases like TruB, rRNA pseudouridine synthases like CBF5, or (as suggested by the absence of paralogs in the Archaea) both. CBF5 likely has additional, eukaryotic-specific
Probab=100.00 E-value=7.6e-65 Score=510.07 Aligned_cols=205 Identities=49% Similarity=0.823 Sum_probs=198.9
Q ss_pred cceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccCC
Q psy1760 9 VSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 88 (793)
Q Consensus 9 ~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~d 88 (793)
+||||+||||+|||||+||+++||.|+.+||||+|||||+||||||||+|+|||+++|+++.+|+|+++++||.+|||+|
T Consensus 1 ~~G~l~v~KP~g~tS~~vv~~vkk~~~~kKvGH~GTLDP~AsGvLiv~vG~~Tkl~~~~~~~~K~Y~~~~~~G~~TdT~D 80 (209)
T TIGR00431 1 INGVLLLDKPQGMTSFDALAKVRRLLNVKKVGHTGTLDPFATGVLPILVGKATKLSPYLTDLDKEYRAEIRLGVRTDTLD 80 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCcCceEEEEEEChHhhhhHHHcCCCCeEEEEEEECCcCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCCcee
Q psy1760 89 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLT 168 (793)
Q Consensus 89 ~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~~~~ 168 (793)
++|+|+++++.. ++.+++++++++|+|.+.|+||+|||+|+||+|||+|||+|+++++++|++.||++++++|+.+.+.
T Consensus 81 ~~G~i~~~~~~~-~~~~~l~~~l~~f~G~~~Q~PP~ySA~Kv~G~raYelAR~g~~v~~~~r~v~I~~i~ll~~~~~~~~ 159 (209)
T TIGR00431 81 PDGQIVETRPVN-PTTEDVEAALPTFRGEIEQIPPMYSALKVNGKRLYEYARQGIEVERKARPVTVYDLQFLKYEGPELT 159 (209)
T ss_pred CCCCEEEecCCC-CCHHHHHHHHHHccCcEEEECChhhEEeeCCHhHHHHHHCCCccccCcceeEEEEEEEEEEcCCcEE
Confidence 999999987755 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760 169 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA 214 (793)
Q Consensus 169 ~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa 214 (793)
|++.||+|||||||++|||..|++.+++..|||+++|+|+++..+.
T Consensus 160 ~~v~cs~GTYIRsL~~Dig~~L~~~a~l~~L~Rt~~G~f~~~~a~~ 205 (209)
T TIGR00431 160 LEVHCSKGTYIRTLARDLGEKLGCGAYVSHLRRTAVGDFPLDQSVT 205 (209)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHcCC
Confidence 9999999999999999999999999999999999999998877654
No 23
>PRK00130 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=6.7e-65 Score=535.89 Aligned_cols=206 Identities=43% Similarity=0.754 Sum_probs=201.2
Q ss_pred cceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccCC
Q psy1760 9 VSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 88 (793)
Q Consensus 9 ~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~d 88 (793)
++|||+||||+||||||||+++||+|+.|||||+|||||+||||||||+|+|||+++|+.+.+|+|+|+++||.+|||+|
T Consensus 1 m~Gil~i~KP~G~tS~dvv~~vrr~~~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~l~~~~K~Y~a~~~lG~~TdT~D 80 (290)
T PRK00130 1 MDGILNILKPPGMTSFDVVRKIRKIAKIKKVGHTGTLDPLASGVLPVCLGKATKIVDYLMEGKKTYRAEIKLGVETDTYD 80 (290)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCeeEEEEEEChhhhhHHHhccCCcEEEEEEEECCcccCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCCcee
Q psy1760 89 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLT 168 (793)
Q Consensus 89 ~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~~~~ 168 (793)
++|+|+++++..++|.+++++++++|+|++.|+||+|||+|+||+|||+|||+|+++++++|+++||++++++|+.+.+.
T Consensus 81 ~~G~i~~~~~~~~~t~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~l~~~~~~~~~ 160 (290)
T PRK00130 81 REGEILKEKEVSHLTEEEIREAILSFQGEIDQVPPMYSALKINGKKLYELARQGIEVEREARKITIYDIEILEIDLPYVI 160 (290)
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHccCeEEEECChHHeEecCCHhHHHHHHCCCccccCceEEEEEEEEEEEEeCCeEE
Confidence 99999999888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760 169 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA 214 (793)
Q Consensus 169 ~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa 214 (793)
|++.||+|||||||++|||..|++++|+..|||+++|+|+++..+.
T Consensus 161 ~~v~cskGTYIRsL~~Dig~~Lg~~a~~~~LrRt~~G~f~~~~a~~ 206 (290)
T PRK00130 161 FDVKCSKGTYIRSLCFDIGEKLNCGAYMWNLIRTETGPFNIENSIT 206 (290)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCCCHHHcCC
Confidence 9999999999999999999999999999999999999998876653
No 24
>PRK00989 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=1.7e-64 Score=511.39 Aligned_cols=206 Identities=38% Similarity=0.682 Sum_probs=199.3
Q ss_pred CCcceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecc-cccccchhccCCceEEEEEEEceeec
Q psy1760 7 SPVSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGE-ATKFSNYLSEADKYYEAIIHLGITTE 85 (793)
Q Consensus 7 ~~~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~-~tk~~~~~~~~~K~Y~~~~~~g~~t~ 85 (793)
-++||||+||||.||||||||+|+||+++.|||||+|||||+||||||||+|+ +||+++|+++.+|+|+++++||.+||
T Consensus 6 ~~~~G~l~i~KP~g~TS~dvv~~ikk~~~~kKvGH~GTLDP~AtGvLiv~vG~~aTkl~~~~~~~~K~Y~~~~~~G~~Td 85 (230)
T PRK00989 6 ESKEGILLVDKPQGRTSFSLIRSLTKLIGVKKIGHAGTLDPFATGVMVMLIGRKFTRLSDILLFEDKEYAAVAHLGTTTD 85 (230)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHHHhCCCcCCcCccCCCCCeeEEEEEECCchhhhHHHhcCCCcEEEEEEEECCccc
Confidence 38899999999999999999999999999999999999999999999999998 79999999999999999999999999
Q ss_pred cCCCcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCC
Q psy1760 86 TGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIP 165 (793)
Q Consensus 86 t~d~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~ 165 (793)
|+|.+|+|+++.+ .++|.++++++|.+|+|.+.|+||+|||+|+||+|||+|||+|+++++++|.|+|+ +++++|+.+
T Consensus 86 T~D~~G~vi~~~~-~~~~~~~i~~~l~~f~G~~~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~i~-~~ll~~~~p 163 (230)
T PRK00989 86 SYDCDGKIVGRSK-KIPTLEEVLSAASYFQGEIQQVPPMFSAKKVQGKKLYEYARQGLSIERRPSTVQVH-LQLTKYEYP 163 (230)
T ss_pred CCCCCCcEEEecC-CCCCHHHHHHHHHhCcceEEeeCChhHeEEECCHhHHHHHhCCCccccCcEEEEEE-EEEEEeeCC
Confidence 9999999999876 56899999999999999999999999999999999999999999999999999999 899999999
Q ss_pred ceeeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760 166 YLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA 214 (793)
Q Consensus 166 ~~~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa 214 (793)
.+.|++.||+|||||||++|||..|++++|+..|||+++|+|.++..+.
T Consensus 164 ~~~~~v~cs~GTYIRSL~~DiG~~Lg~~a~~~~LrRt~~G~f~l~~a~~ 212 (230)
T PRK00989 164 LLHFVVQCSKGTYIRSIAHELGNMLGCGAYLEELRRLRSGSFSIDQCID 212 (230)
T ss_pred eEEEEEEEcCCCcHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHcCC
Confidence 9999999999999999999999999999999999999999998876553
No 25
>PRK02755 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=1.2e-64 Score=533.70 Aligned_cols=205 Identities=39% Similarity=0.664 Sum_probs=199.2
Q ss_pred cceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccCC
Q psy1760 9 VSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 88 (793)
Q Consensus 9 ~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~d 88 (793)
++|||+||||.||||||||+++||+|+.|||||+|||||+||||||||+|+|||+++|+.+ +|+|+|+++||.+|||+|
T Consensus 2 m~Gil~i~KP~G~TS~dvv~~vrr~~~~kKvGH~GTLDP~AtGvL~i~vG~aTkl~~~l~~-~K~Y~a~~~lG~~TdT~D 80 (295)
T PRK02755 2 MFGFLNLDKPAGLTSHDCVARLRRLLRLKRVGHGGTLDPAATGVLPIALGKATRLLPYLPG-EKTYRGTIRFGVRTSTDD 80 (295)
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHhCCCccccCCCCCCcCeeEEEEEEChhhhhHHHhCC-CcEEEEEEEECCcccCCC
Confidence 6899999999999999999999999999999999999999999999999999999999997 999999999999999999
Q ss_pred CcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecC---C
Q psy1760 89 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI---P 165 (793)
Q Consensus 89 ~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~---~ 165 (793)
++|+|+++++..++|.+++++++++|+|++.|+||+|||+|+||+|||+|||+|+++++++|+++||++++++|+. +
T Consensus 81 ~~G~v~~~~~~~~~~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~G~r~Y~lAR~G~~ve~~~r~v~I~~~~l~~~~~~~~~ 160 (295)
T PRK02755 81 LQGEILSSQPWPHLSLAEIETALPQFRGKIEQRPPQYSAIQVDGERLYALARRGETMELPARTVTIFRLQLLDWRPGDQP 160 (295)
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHhccCeEEEeCChhheEeeCCHhHHHHHHCCCccccCceEEEEEEEEEEEEcCCCCc
Confidence 9999999988888999999999999999999999999999999999999999999999999999999999999976 6
Q ss_pred ceeeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760 166 YLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA 214 (793)
Q Consensus 166 ~~~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa 214 (793)
.+.|++.||+|||||||++|||..|++++||..|||+++|+|.++..+.
T Consensus 161 ~~~~~v~cskGTYIRsL~~DiG~~Lg~~a~m~~LrRt~~G~f~~~~a~~ 209 (295)
T PRK02755 161 ELDLEIHCGAGTYIRSLARDLGAVLGTGGTLAALRRTQSLGFHLAQSLP 209 (295)
T ss_pred eEEEEEEECCCcCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHcCC
Confidence 8999999999999999999999999999999999999999998876654
No 26
>PRK05033 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=3.4e-64 Score=532.34 Aligned_cols=208 Identities=49% Similarity=0.842 Sum_probs=202.0
Q ss_pred CCCcceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeec
Q psy1760 6 ISPVSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTE 85 (793)
Q Consensus 6 ~~~~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~ 85 (793)
-++++|||+||||+||||||||+++||+++.|||||+|||||+||||||||+|+|||+++|+++.+|+|+|+++||.+||
T Consensus 6 ~~~~~Gil~i~KP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~~~~~~K~Y~a~~~lG~~Td 85 (312)
T PRK05033 6 GRDINGVLLLDKPQGMSSNDALQKVKRLFNANKAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVTARLGQRTD 85 (312)
T ss_pred CCCCCeEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCcCCCcCeeEEEEEECHHhhhhHHhcCCCcEEEEEEEECCccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCC
Q psy1760 86 TGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIP 165 (793)
Q Consensus 86 t~d~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~ 165 (793)
|+|++|+|+++++. ++|.+++++++++|.|+++|+||+|||+|+||+|||+|||+|++|++++|.++||++++++|+.+
T Consensus 86 T~D~~G~v~~~~~~-~~t~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~~ 164 (312)
T PRK05033 86 TSDADGEVVEERPV-TLSAEQLEAALEKFRGDIEQVPSMYSALKYQGQPLYEYARQGIEVEREARPITIYELELIRFEGD 164 (312)
T ss_pred CCCCCCCEEEeecC-CCCHHHHHHHHHHCcCcEEEeCChhHeEeeCCeEHHHHHhCCcccccCceeEEEEEEEEeeEeCC
Confidence 99999999998876 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760 166 YLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA 214 (793)
Q Consensus 166 ~~~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa 214 (793)
.+.|++.||+|||||||++|||..|++++|+..|||+++|+|+++..+.
T Consensus 165 ~~~~~v~cs~GTYIRsL~~Dig~~Lg~~a~~~~LrRt~~G~f~~~~a~~ 213 (312)
T PRK05033 165 ELELEVHCSKGTYIRTLVDDLGEKLGCGAHVIYLRRTQVAPYPLERMVT 213 (312)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCcccccccC
Confidence 9999999999999999999999999999999999999999998876554
No 27
>PRK02484 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=3.5e-64 Score=530.62 Aligned_cols=206 Identities=38% Similarity=0.687 Sum_probs=198.1
Q ss_pred cceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccCC
Q psy1760 9 VSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 88 (793)
Q Consensus 9 ~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~d 88 (793)
+||||+||||+||||||||+++||+|+.|||||+|||||+||||||||+|+|||+++|+++.+|+|+|+++||.+|||+|
T Consensus 2 m~Gil~i~KP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~vG~aTkl~~~l~~~~K~Y~a~~~lG~~TdT~D 81 (294)
T PRK02484 2 INGIINLKKEAGMTSHDAVFKLRKILQTKKIGHGGTLDPDVVGVLPIAVGKATRLIEYMTEAGKVYEGEITLGYSTTTED 81 (294)
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHhCCCccccCCCCCCCCeeEEEEEEChhhhhhHHhccCCcEEEEEEEECCcccCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEeeccCCCC-CCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEe---ec-
Q psy1760 89 IEGKIIDFNKNIP-NSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIID---YT- 163 (793)
Q Consensus 89 ~~g~~~~~~~~~~-~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d---~~- 163 (793)
++|+|+++++..+ +|.+++++++++|+|++.|+||+|||+|+||+|||+|||+|++|++++|+|.||++++++ |+
T Consensus 82 ~~G~vi~~~~~~~~~~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~l~~~~~~~~ 161 (294)
T PRK02484 82 ASGEVVAETPLTQPLTEEEVDQAMTSFTGKITQIPPMYSAVKVNGKKLYEYARAGEEVERPKRQVTIYQFERTSPLSFDE 161 (294)
T ss_pred CCCCEEEeccCCCCCCHHHHHHHHHhccCeEEEeCChhHeEeeCCHhHHHHHHCCCccccCceEEEEEEEEEeccccccc
Confidence 9999999988775 899999999999999999999999999999999999999999999999999999999974 63
Q ss_pred --CCceeeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760 164 --IPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA 214 (793)
Q Consensus 164 --~~~~~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa 214 (793)
.+.+.|++.||+|||||||++|||..|++++|+..|||+++|+|.++..+.
T Consensus 162 ~~~~~~~~~v~cskGTYIRsL~~DiG~~Lg~~a~~~~L~Rt~~G~f~l~~a~~ 214 (294)
T PRK02484 162 DGLCRFSFRVACSKGTYVRTLAVDLGEKLGYAAHMSFLTRTASAGLTLEQAVT 214 (294)
T ss_pred cCCceEEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHcCC
Confidence 367899999999999999999999999999999999999999998877654
No 28
>PRK01550 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=3.3e-64 Score=533.17 Aligned_cols=206 Identities=40% Similarity=0.685 Sum_probs=197.7
Q ss_pred cceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccCC
Q psy1760 9 VSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 88 (793)
Q Consensus 9 ~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~d 88 (793)
+||||+||||+||||||||+++||+|+.|||||+|||||+||||||||+|+|||+++|+++.+|+|+|+++||.+|||+|
T Consensus 1 m~Gil~i~KP~G~TS~dvv~~vrr~~~~kKvGH~GTLDP~AtGvL~i~vG~aTkl~~~l~~~~K~Y~a~~~lG~~TdT~D 80 (304)
T PRK01550 1 MNGVLLLHKPRGMTSHDCVFKLRKILRTKKVGHTGTLDPEVSGVLPICVGRATKIAEYLTDEGKTYEGEVTLGFSTTTED 80 (304)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCCCcccCCCCCCcCeeEEEEEEChhhhhhHHhcCCCcEEEEEEEECCcccCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEeeccCCCC-CCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEee----c
Q psy1760 89 IEGKIIDFNKNIP-NSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDY----T 163 (793)
Q Consensus 89 ~~g~~~~~~~~~~-~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~----~ 163 (793)
++|+|+++++..+ +|.+++++++++|.|++.|+||+|||+|+||+|||+|||+|++|++++|+|+||+++++++ +
T Consensus 81 ~~G~v~~~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAvKv~Gkr~YelAR~G~~ve~~~r~v~I~~i~ll~~~~~~~ 160 (304)
T PRK01550 81 ADGEVVETKPVDRPITREEIEAALASLTGTIEQIPPMYSAVKVNGKKLYEYARAGIEVERPVRQITIHEFVLLDSREDFE 160 (304)
T ss_pred CCCCEEeeccCCCCCCHHHHHHHHHhccceEEEeCChhHeEecCCHhHHHHHHCCCccccCCcceEEEEEEEEeeccccc
Confidence 9999999887764 8999999999999999999999999999999999999999999999999999999999974 2
Q ss_pred --CCceeeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760 164 --IPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA 214 (793)
Q Consensus 164 --~~~~~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa 214 (793)
.+.+.|++.||+|||||||++|||..|++++|+..|||+++|+|.++..+.
T Consensus 161 ~~~~~~~~~v~cskGTYIRsL~~Dig~~Lg~~a~~~~L~Rt~~G~f~~~~a~~ 213 (304)
T PRK01550 161 GETQSFRFRVTCSKGTYVRTLAVMIGEKLGYPAHMSHLVRTASGGFTLEDCLT 213 (304)
T ss_pred cCCceEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCCCHHHcCC
Confidence 367899999999999999999999999999999999999999998876654
No 29
>PRK14124 tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=4e-64 Score=531.78 Aligned_cols=205 Identities=39% Similarity=0.627 Sum_probs=199.9
Q ss_pred cceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccCC
Q psy1760 9 VSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 88 (793)
Q Consensus 9 ~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~d 88 (793)
+||||+||||+||||||||+|+||+|+.|||||+|||||+||||||||+|+|||+++|+.+.+|+|+|+++||.+|||+|
T Consensus 2 m~Gil~i~KP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~l~~~~K~Y~a~~~lG~~TdT~D 81 (308)
T PRK14124 2 KHGFLVAYKPKGPTSHDVVDEVRKKLKTRKVGHAGTLDPFATGVLIVGVNKATRLLEYLKNEKKVYYVKMRLGLITETFD 81 (308)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHcCCCccCcCcCCCCCCcEEEEEEEChHHhhhHHHhcCCceEEEEEEeCccccCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCCcee
Q psy1760 89 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLT 168 (793)
Q Consensus 89 ~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~~~~ 168 (793)
++|+|+++++. ++|.+++++++++|.|++.|+||+|||+|+||+|||+|||+|+++++++|+++||++++++|+.+.+.
T Consensus 82 ~~G~vi~~~~~-~~~~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~~~~~ 160 (308)
T PRK14124 82 ITGEVVEEREC-NVTEEEIREAIFSFVGEYKQVPPAYSAKKYKGERLYKLAREGKIINLPPKEVKIYEIWDISIEGPDVS 160 (308)
T ss_pred CCCCEEEecCC-CCCHHHHHHHHHhCcCeEEEeCCchHeEEECChhHHHHHhCCCccccCceeeEEEEEEEEEEeCCeEE
Confidence 99999998775 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760 169 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA 214 (793)
Q Consensus 169 ~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa 214 (793)
|++.||+|||||+|++|||..|++++|+..|||+++|+|+++..+.
T Consensus 161 ~~v~cskGTYIRsL~~DiG~~Lg~~a~m~~LrRt~~G~f~l~~a~~ 206 (308)
T PRK14124 161 FRVEVSPGTYIRSLCMDIGYKLGCGATAVELVRLSVGKFSIEDSIN 206 (308)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHccC
Confidence 9999999999999999999999999999999999999998776554
No 30
>cd00506 PseudoU_synth_TruB_like PseudoU_synth_TruB: Pseudouridine synthase, TruB family. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases similar to Escherichia coli TruB, Saccharomyces cerevisiae Pus4, M. tuberculosis TruB, S. cerevisiae Cbf5 and human dyskerin. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruB, M. tuberculosis TruB and S. cerevisiae Pus4, make psi55 in the T loop of tRNAs. Pus4 catalyses the formation of psi55 in both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. Mutations in human dysker
Probab=100.00 E-value=4.3e-64 Score=507.03 Aligned_cols=204 Identities=38% Similarity=0.598 Sum_probs=198.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccCCCc
Q psy1760 11 VVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIE 90 (793)
Q Consensus 11 g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~d~~ 90 (793)
|||+||||.||||||||+++||.|+.+||||+|||||+||||||+|+|+|||+++|++..+|+|+++++||.+|||+|++
T Consensus 1 Gil~i~KP~g~tS~~vv~~ik~~~~~kKvGH~GTLDP~AsGvLiv~vG~aTkl~~~~~~~~K~Y~~~~~lG~~TdT~D~~ 80 (210)
T cd00506 1 GLFAVDKPQGPSSHDVVDTIRRIFLAEKVGHGGTLDPFATGVLVVGIGKATKLLKHLLAATKDYTAIGRLGQATDTFDAT 80 (210)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCccccCCCCcCCCcCeeEEEEEECHHHhhhHHHhcCCceEEEEEEECCcCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCC--cee
Q psy1760 91 GKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIP--YLT 168 (793)
Q Consensus 91 g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~--~~~ 168 (793)
|+|+++++..++|++++++++++|+|+++|+||+|||+|+||+|||||||+|+++++++|++.||++++++|+.+ .+.
T Consensus 81 G~v~~~~~~~~it~e~l~~~l~~f~G~i~Q~pP~ySAvKv~G~raYelAR~G~~v~~~~r~v~I~~i~ll~~~~~~~~~~ 160 (210)
T cd00506 81 GQVIEETPYDHITHEQLERALETLTGDIQQVPPLYSAVKRQGQRAYELARRGLLVPDEARPPTIYELLCIRFNPPHFLLE 160 (210)
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHCCCeEEEeCCchheEEECCHhHHHHHHCCCccccCcEeEEEEEEEEEEEcCCCcEEE
Confidence 999999998899999999999999999999999999999999999999999999999999999999999999874 789
Q ss_pred eEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760 169 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA 214 (793)
Q Consensus 169 ~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa 214 (793)
|++.||+|||||+|++|||..|++.+++..|||+++|+|.++..+.
T Consensus 161 ~~v~cs~GTYIRsL~~Dig~~Lg~~a~l~~L~R~~~G~f~~~~a~~ 206 (210)
T cd00506 161 VEVVCETGTYIRTLIHDLGLELGVGAHVTELRRTRVGPFKVENAVT 206 (210)
T ss_pred EEEEECCCcCHHHHHHHHHHHhCCcEEEEEEEEEEECCCchhhccc
Confidence 9999999999999999999999999999999999999998876553
No 31
>PRK05389 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=6.7e-64 Score=530.24 Aligned_cols=208 Identities=36% Similarity=0.619 Sum_probs=199.8
Q ss_pred CCCcceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeec
Q psy1760 6 ISPVSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTE 85 (793)
Q Consensus 6 ~~~~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~ 85 (793)
-++++|||+||||+||||||||+++||.|+.|||||+|||||+||||||||+|+|||+++|+++.+|+|+|+++||.+||
T Consensus 9 ~~~~~Gil~i~KP~G~TS~dvv~~vrk~~~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~l~~~~K~Y~a~~~lG~~Td 88 (305)
T PRK05389 9 GRPISGWLILDKPAGMTSTEAVSKVKWLFDAQKAGHAGTLDPLASGVLPIALGEATKTVPYVMDGTKRYRFTVAWGEERD 88 (305)
T ss_pred CCCCCeEEEEeCCCCCCHHHHHHHHHHHhcccccCCcccCCCCCceEEEEEEChhhhhhHHhccCCcEEEEEEEECCccc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeec-C
Q psy1760 86 TGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYT-I 164 (793)
Q Consensus 86 t~d~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~-~ 164 (793)
|+|++|+|+++++. ++|.+++++++++|.|++.|+||+|||+|+||+|||+|||+|++|++++|+++||++++++|+ .
T Consensus 89 T~D~~G~v~~~~~~-~~~~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~~ 167 (305)
T PRK05389 89 TDDLEGEVTATSDV-RPTDEEIRAALPAFTGEIMQVPPQFSAIKIDGERAYDLAREGETVELPARPVEIDRLTLVERPDA 167 (305)
T ss_pred CCCCCCCEEEecCC-CCCHHHHHHHHHhccceEEEeCCchheEEECCHhHHHHHHCCCccccCceEEEEEEEEEEEecCC
Confidence 99999999998754 589999999999999999999999999999999999999999999999999999999999994 5
Q ss_pred CceeeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760 165 PYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA 214 (793)
Q Consensus 165 ~~~~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa 214 (793)
+.+.|++.||+|||||||++|||..|++++|+..|||+++|+|.++..+.
T Consensus 168 ~~~~~~v~cskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~~~~a~~ 217 (305)
T PRK05389 168 DHAVFEVECGKGTYVRSLARDLGRALGCYGHIAALRRTRVGPFTEEDAIT 217 (305)
T ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEEEeEEECCCcHHHccC
Confidence 78999999999999999999999999999999999999999998776543
No 32
>PRK03287 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=6.8e-64 Score=527.77 Aligned_cols=212 Identities=34% Similarity=0.540 Sum_probs=202.5
Q ss_pred CCCCCCCCcceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEE
Q psy1760 1 MILPSISPVSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHL 80 (793)
Q Consensus 1 ~~~~~~~~~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~ 80 (793)
|+.|. .++|||+||||.||||||||+++||+|+.||+||+|||||+||||||||+|+|||+++|+++.+|+|+|+++|
T Consensus 2 ~~~~~--~~~Gil~i~KP~G~TS~dvv~~vrr~~~~kKvGH~GTLDP~AtGvL~i~vG~aTKl~~~l~~~~K~Y~a~~~l 79 (298)
T PRK03287 2 MAMPL--TGSGLVVVDKPAGMTSHDVVARCRRLFGTRKVGHAGTLDPMATGVLVLGVERATKLLGHLTLTDKSYTATIRL 79 (298)
T ss_pred CCCCC--CcCeEEEEeCCCCCCHHHHHHHHHHHhCCCCCCcCccCCCcceeEEEEEeChhhhhhHHHhcCCcEEEEEEEe
Confidence 45554 5789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccCCCcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEE
Q psy1760 81 GITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITII 160 (793)
Q Consensus 81 g~~t~t~d~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~ 160 (793)
|.+|||+|++|+|+++++..++|.+++++++++|+|.+.|+||+|||+|+||+|||+|||+|++|++++|+|.||+++++
T Consensus 80 G~~TdT~D~~G~v~~~~~~~~it~~~i~~~l~~f~G~i~Q~PP~ySAvKv~Gkr~YelAR~G~~ve~~~R~v~I~~~~l~ 159 (298)
T PRK03287 80 GQATTTDDAEGEVLASADASAVTDEAIAAAVAALTGEIMQVPSAVSAIKVDGKRAYARVRAGEEVELPARPVTVSRFEVL 159 (298)
T ss_pred CccccCCCCCCCEEeecCCCCCCHHHHHHHHHhCcCeEEEeCChhHeEEECCHHHHHHHhCCCccccCcEEEEeeeeEEE
Confidence 99999999999999998887899999999999999999999999999999999999999999999999999999999999
Q ss_pred eecC--C--ceeeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760 161 DYTI--P--YLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA 214 (793)
Q Consensus 161 d~~~--~--~~~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa 214 (793)
+|+. + .+.|++.||+|||||||++|||..|+|++|+..|||+++|+|+++..+.
T Consensus 160 ~~~~~~~~~~~~~~v~cskGTYIRSL~~Dig~~Lg~~a~~~~LrRt~~G~f~l~~a~~ 217 (298)
T PRK03287 160 AVRRDGDFIDLDVEVDCSSGTYIRALARDLGAALGVGGHLTALRRTRVGPFTLDQART 217 (298)
T ss_pred EEecCCCccEEEEEEEECCCcCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHccC
Confidence 9965 2 6789999999999999999999999999999999999999998877654
No 33
>PRK01528 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=6.7e-64 Score=526.43 Aligned_cols=205 Identities=38% Similarity=0.570 Sum_probs=197.9
Q ss_pred ceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccCCC
Q psy1760 10 SVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDI 89 (793)
Q Consensus 10 ~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~d~ 89 (793)
||||+||||+||||||||+++||+|+.+||||+|||||+||||||||+|+|||+++|+++.+|+|+|+++||.+|||+|+
T Consensus 3 ~GiL~i~KP~G~TS~dvv~~vrk~~~~kKvGH~GTLDP~AtGvL~v~vG~aTKl~~~l~~~~K~Y~~~~~lG~~TdT~D~ 82 (292)
T PRK01528 3 NYWLNIYKPRGISSAKLVSIVKKILGKVKIGHAGTLDVEAEGVLPLAVGEATKLVQLLIDAKKTYIFTVKFGKQTDSGDY 82 (292)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHcCCCccCcCccCCCcCceEEEEEEChHhhhhHHHhcCCceEEEEEEECCcccCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecC--Cce
Q psy1760 90 EGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI--PYL 167 (793)
Q Consensus 90 ~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~--~~~ 167 (793)
+|+|+++++.. +|.+++++++++|+|++.|+||+|||+|+||+|||+|||+|++|++++|.|+||++++++|+. +.+
T Consensus 83 ~G~v~~~~~~~-~~~e~l~~~l~~f~G~i~Q~PP~ySAvKv~G~raYelAR~G~~vel~~r~v~I~~i~ll~~~~~~~~~ 161 (292)
T PRK01528 83 AGKVIATKDYI-PSKEEAYAVCSKFIGNITQIPPAFSALKVNGVRAYKLAREGKEVELKPRNITIYDLKCLNFDEKNATA 161 (292)
T ss_pred CCCEEEecCCC-CCHHHHHHHHHhccceEEeeCChhHeEEECCHhHHHHHhCCcccccCceeEEEEEEEEEEEcCCCcEE
Confidence 99999988765 599999999999999999999999999999999999999999999999999999999999976 468
Q ss_pred eeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhcccccccccceee
Q psy1760 168 TLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAI 215 (793)
Q Consensus 168 ~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIaI 215 (793)
.|++.||+|||||||++|||..|+|++|+..|||+++|+|.++..+.+
T Consensus 162 ~~~v~cskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~~~~a~~l 209 (292)
T PRK01528 162 TYYTECSKGTYIRTLAEDLALSLQSLGFVIELRRTQVGIFKEENAIRI 209 (292)
T ss_pred EEEEEECCCccHHHHHHHHHHHHCCceEEeEEEeEEECCccHHHcCCH
Confidence 899999999999999999999999999999999999999988876643
No 34
>PRK14123 tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=9.1e-64 Score=530.01 Aligned_cols=206 Identities=39% Similarity=0.665 Sum_probs=197.9
Q ss_pred cceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccCC
Q psy1760 9 VSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 88 (793)
Q Consensus 9 ~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~d 88 (793)
+||||+||||+||||||||+++||+|+.|||||+|||||+||||||||+|+|||+++|+++.+|+|+|+++||.+|||+|
T Consensus 2 m~Gil~i~KP~G~TS~dvv~~vrr~~~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~l~~~~K~Y~~~~~lG~~TdT~D 81 (305)
T PRK14123 2 YNGILPVYKERGLTSHDVVFKLRKILKTKKIGHTGTLDPEVAGVLPVCIGNATRVSDYVMDMGKAYEATVSIGRSTTTED 81 (305)
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHhCCCccccCcCCCCcCeeEEEEEEChhhhhHHHhcCCCcEEEEEEEECCcccCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEeeccCCC--CCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEe---ec
Q psy1760 89 IEGKIIDFNKNI--PNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIID---YT 163 (793)
Q Consensus 89 ~~g~~~~~~~~~--~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d---~~ 163 (793)
++|+|+++++.. ++|.+++++++++|+|+++|+||+|||+|+||+|||+|||+|++|++++|+|+||++++++ |+
T Consensus 82 ~~G~vi~~~~~~~~~~~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~~~~~~~~~ 161 (305)
T PRK14123 82 QTGDTLETKGVHSADFNKDDIDRLLEQFKGIIEQIPPMYSSVKVNGKKLYEYARNNETVERPKRKVNIKDIGRISELDFK 161 (305)
T ss_pred CCCCEEEeccCCcCCCCHHHHHHHHHhccCceeecCChhheEeeCCHhHHHHHhCCCcccCCceEEEEEEEEEeeccccc
Confidence 999999988753 5899999999999999999999999999999999999999999999999999999999884 65
Q ss_pred C--CceeeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760 164 I--PYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA 214 (793)
Q Consensus 164 ~--~~~~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa 214 (793)
. +.+.|++.||+|||||||++|||..|+|++|+..|||+++|+|.++..+.
T Consensus 162 ~~~~~~~~~v~cskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~l~~a~~ 214 (305)
T PRK14123 162 ENECHFKIRVICGKGTYIRTLATDIGVKLGFPAHMSKLTRIESGGFVLKDSLT 214 (305)
T ss_pred CCCceEEEEEEeCCCcCHHHHHHHHHHHHCCCEEEEEEEeEEECCCchHHcCC
Confidence 4 67999999999999999999999999999999999999999998877664
No 35
>PRK04099 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=1.7e-63 Score=517.05 Aligned_cols=204 Identities=37% Similarity=0.591 Sum_probs=198.5
Q ss_pred cceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccCC
Q psy1760 9 VSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 88 (793)
Q Consensus 9 ~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~d 88 (793)
+||||+||||+|||||+||+|+||.|+.||+||+|||||+||||||||+|+|||+++|+.+.+|+|+|+++||.+|||+|
T Consensus 1 mngil~vdKP~g~tS~~vv~~ikk~~~~kKvGH~GTLDP~AtGvLiv~iG~aTKl~~~l~~~~K~Y~a~~~lG~~TdT~D 80 (273)
T PRK04099 1 MNRLFVANKPAGMSSNAFLSRLKRKYGVKKAGFSGTLDPFAKGVLIVAFGQYTKLFRFLKKTPKTYRATLWLGASSPSLD 80 (273)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCCCccccCccCCCCCeeEEEEEEChHhhhHHHhccCCceEEEEEEECCcccCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCCcee
Q psy1760 89 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLT 168 (793)
Q Consensus 89 ~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~~~~ 168 (793)
.+| |+++.+..++|++++++++++|+|+++|+||+|||+|+||+|||+|||+|+++++++|+++||++++++|+.+.+.
T Consensus 81 ~e~-i~~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~~~ll~~~~p~~~ 159 (273)
T PRK04099 81 IEN-IESIQIIKPFDKDLIEKILKSLQGEISYTPPKFSAKKINGKRAYELARKGEEFELKPITMEIFDCKLLSYNHPFLT 159 (273)
T ss_pred Ccc-eEEeccCCCCCHHHHHHHHHhCcceEEEeCChhhEEeeCCHhHHHHHhCCcccccCceeEEEEEEEEEEEeCCEEE
Confidence 998 7787777789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccchhHHHHHHHHHhhhhccchHHHHHHhhcccccccccce
Q psy1760 169 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNI 213 (793)
Q Consensus 169 ~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nI 213 (793)
|++.||+|||||||++|||..|++++|+..|||++.|+|.++...
T Consensus 160 f~v~cs~GTYIRSL~~Dig~~Lg~~a~m~~LrRt~~G~f~~~~~~ 204 (273)
T PRK04099 160 FEITVSEGAYIRSLGELIAKKLGVNGTLSSLERLSEGKFVYENEK 204 (273)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHCe
Confidence 999999999999999999999999999999999999999887644
No 36
>PRK14846 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=5.1e-63 Score=521.28 Aligned_cols=204 Identities=37% Similarity=0.568 Sum_probs=197.0
Q ss_pred ceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccCCC
Q psy1760 10 SVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDI 89 (793)
Q Consensus 10 ~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~d~ 89 (793)
+|||+||||.||||||||+++||+++.|||||+|||||+||||||||+|+|||+++|+.+.+|+|+++++||.+|||+|+
T Consensus 3 nGiL~idKP~G~TS~dvv~~vrk~l~~kKVGH~GTLDP~AtGVL~i~vG~aTKl~~~l~~~~K~Y~a~~~lG~~TDT~D~ 82 (345)
T PRK14846 3 NYWLNIYKPRGISSAQLVSIVKKILGKTKIGHAGTLDVEAEGILPFAVGEATKLIHLLIDARKTYIFTVKFGMQTNSGDC 82 (345)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCCCcCCcCccCCCcCceEEEEEEChhhhhhHHHhcCCceEEEEEEECCccCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecC--Cce
Q psy1760 90 EGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI--PYL 167 (793)
Q Consensus 90 ~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~--~~~ 167 (793)
+|+|+++.+.. ++.++++++|++|.|+++|+||+|||+|+||+|||+|||+|++|++++|+|.||++++++|+. +.+
T Consensus 83 eG~ii~~~~~~-~~~e~l~~~L~~f~G~i~Q~PP~ySAvKv~GkraYelARkG~~Vel~~R~V~I~~i~ll~f~~~~~~~ 161 (345)
T PRK14846 83 AGKVIATKDCI-PSQEEAYAVCSKFIGNVTQIPPAFSALKVNGVRAYKLAREGKKVELKPRNITIYDLKCLNFDEKNATA 161 (345)
T ss_pred CCCEEEecCCC-CCHHHHHHHHHhCcceEEeeCChhheEeECChhHHHHHhCCCccccCceeEEEEEEEEEEEcCCCcEE
Confidence 99999987654 689999999999999999999999999999999999999999999999999999999999976 468
Q ss_pred eeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760 168 TLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA 214 (793)
Q Consensus 168 ~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa 214 (793)
.|++.||+|||||+|++|||..|++++|+..|||+++|.|.++..+.
T Consensus 162 ~~~v~CSkGTYIRSLa~DIG~~Lg~~A~l~~LrRtr~G~F~l~~ai~ 208 (345)
T PRK14846 162 TYYTECSKGTYIRTLAEDLALSLQSLGFVIELRRTQVGIFKEENAIR 208 (345)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCCCEEEeEEEeEEECCCcHHHcCC
Confidence 89999999999999999999999999999999999999998877664
No 37
>PRK14122 tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=4.7e-63 Score=522.79 Aligned_cols=203 Identities=35% Similarity=0.565 Sum_probs=196.9
Q ss_pred EEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccCCCcc
Q psy1760 12 VIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEG 91 (793)
Q Consensus 12 ~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~d~~g 91 (793)
||+||||.||||||||+++||+|+.|||||+|||||+||||||||+|+|||+++|+++.+|+|+|+++||.+|||+|++|
T Consensus 3 il~idKP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~aTKl~~~l~~~~K~Y~a~~~lG~~TdT~D~eG 82 (312)
T PRK14122 3 VYAVDKPLGLTSHDVVNRARRALGTRRVGHTGTLDPLATGVLVLCTDDSTKLVPFLSAEDKEYLAWVSFGATTPTLDAEG 82 (312)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcCeeeEEEEEChhhhhhHHhcCCCceEEEEEEECCcCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecC-------
Q psy1760 92 KIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI------- 164 (793)
Q Consensus 92 ~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~------- 164 (793)
+|+++++..++|.+++++++++|.|.++|+||+|||+|+||+|||+|||+|+++++++|.|+||++++++|+.
T Consensus 83 ~i~~~~~~~~~~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~vel~~R~v~I~~i~ll~~~~~~~~~~~ 162 (312)
T PRK14122 83 PISEEAPVSPLDEKDLEAALPGFLGLTEQVPPQYSAIKVGGVRAYEAARAGGALELPARPVVYHELELLAFEPSVAPIPR 162 (312)
T ss_pred CEEEecCCCCCCHHHHHHHHHhCcCeEEEeCChHHeEEECCeEHHHHHhCCCccccCCeeEEEEEEEEEEeccccccccc
Confidence 9999998888999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ---------------------------CceeeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760 165 ---------------------------PYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA 214 (793)
Q Consensus 165 ---------------------------~~~~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa 214 (793)
+.+.|++.||+|||||||++|||..|++++|+..|||+++|+|.++..+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~cSkGTYIRSLa~DiG~~Lg~~a~m~~LrRt~~G~f~l~~a~~ 239 (312)
T PRK14122 163 PIAPSAEGWTPDPRGRPVTLPEPLGEYPTALLRLVVGSGTYVRSFARDLGAALGVPAHLSGLVRTRVGRYGLEDAVS 239 (312)
T ss_pred ccccccccccccccccccccccccccCceEEEEEEeCCCcCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHcCC
Confidence 45889999999999999999999999999999999999999998877654
No 38
>cd02573 PseudoU_synth_EcTruB PseudoU_synth_EcTruB: Pseudouridine synthase, Escherichia coli TruB like. This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruB and M. tuberculosis TruB make psi55 in the T loop of tRNAs. Psi55 is nearly universally conserved. E. coli TruB is not inhibited by RNA containing 5-fluorouridine.
Probab=100.00 E-value=4.9e-63 Score=519.26 Aligned_cols=204 Identities=47% Similarity=0.778 Sum_probs=199.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccCCCc
Q psy1760 11 VVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIE 90 (793)
Q Consensus 11 g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~d~~ 90 (793)
|||+||||+||||||||+++||.|+.|||||+|||||+||||||+|+|+|||+++|+++.+|+|+|+++||.+|||+|++
T Consensus 1 Gil~i~KP~G~tS~~vv~~vr~~~~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~l~~~~K~Y~~~~~~G~~TdT~D~~ 80 (277)
T cd02573 1 GILLLDKPAGLTSHDVVQKVRRLLGTKKVGHTGTLDPLATGVLPIALGEATKLSQYLLDADKTYRATVRLGEATDTDDAE 80 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCcCccCCCCCCCCcCeEEEEEEEChHHhhHHHhcCCCcEEEEEEEECCcccCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecC--Ccee
Q psy1760 91 GKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI--PYLT 168 (793)
Q Consensus 91 g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~--~~~~ 168 (793)
|+|+++++..++|.+++++++++|.|+++|+||+|||+|+||+|||+|||+|+++++++|+++||++++++|+. +.+.
T Consensus 81 G~v~~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAvkv~G~raYelAR~G~~ve~~~r~v~I~~i~ll~~~~~~~~~~ 160 (277)
T cd02573 81 GEIIETSPPPRLTEEEIEAALKAFTGEIEQVPPMYSAVKVNGKRLYELARAGEEVERPPRKVTIYSLELLSFDPENPEAD 160 (277)
T ss_pred CCEEEecCCCCCCHHHHHHHHHHccCcEEeeCChhHeEeeCCccHHHHHhCCCccccCCeeEEEEEEEEEEecCCCCeEE
Confidence 99999988888999999999999999999999999999999999999999999999999999999999999987 8999
Q ss_pred eEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760 169 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA 214 (793)
Q Consensus 169 ~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa 214 (793)
|++.||+|||||+|++|||..|++++|+..|||++.|+|.++..+.
T Consensus 161 ~~v~cs~GTYIRsL~~Dig~~Lg~~a~~~~L~Rt~~G~f~~~~a~~ 206 (277)
T cd02573 161 FEVECSKGTYIRSLARDLGKALGCGAHLSALRRTRSGPFTLEDAIT 206 (277)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCeEEEEEEEEEECCccHHHccC
Confidence 9999999999999999999999999999999999999998876554
No 39
>PRK02193 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=8.2e-63 Score=515.07 Aligned_cols=200 Identities=41% Similarity=0.560 Sum_probs=194.5
Q ss_pred EEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccCCCcc
Q psy1760 12 VIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEG 91 (793)
Q Consensus 12 ~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~d~~g 91 (793)
||+||||.||||||||+++||.++.|||||+|||||+||||||||+|+|||+++|+++.+|+|+|+++||.+|||+|++|
T Consensus 2 il~i~KP~G~tS~dvv~~vrr~~~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~l~~~~K~Y~a~~~lG~~TdT~D~~G 81 (279)
T PRK02193 2 IKLLYKPKGISSFKFIKNFAKTNNIKKIGHTGTLDPLASGLLLVATDEDTKLIDYLDQKDKTYIAKIKFGFISTTYDSEG 81 (279)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccCccCCCcCeeEEEEEEChhhhhhHHhccCCcEEEEEEEeCCcccCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCC--ceee
Q psy1760 92 KIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIP--YLTL 169 (793)
Q Consensus 92 ~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~--~~~~ 169 (793)
+|+++.+..++|++++++++++|.|+++|+||+|||+|+||+|||+|||+|+++++++|+++||++++++|+.+ .+.|
T Consensus 82 ~i~~~~~~~~~~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~~~~~~~~ 161 (279)
T PRK02193 82 QIINVSQNIKVTKENLEEALNNLVGSQKQVPPVFSAKKVNGKRAYDLARQGKQIELKPIEIKISKIELLNFDEKLQNCVF 161 (279)
T ss_pred CEEeecCCCCCCHHHHHHHHHhCcCeEEEeCChHHeEeeCCHhHHHHHhCCceeccCCeeEEEEEEEEEEEcCCCceEEE
Confidence 99997777789999999999999999999999999999999999999999999999999999999999999865 7899
Q ss_pred EEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccc
Q psy1760 170 RIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDK 211 (793)
Q Consensus 170 ~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~ 211 (793)
++.||+|||||||++|||..|+|++|+..|||+++|+|+++.
T Consensus 162 ~v~cskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~~~~ 203 (279)
T PRK02193 162 MWVVSRGTYIRSLIHDLGKMLKTGAYMSDLERTKIGNLDKNF 203 (279)
T ss_pred EEEECCCcCHHHHHHHHHHHHCCCEEEEEEEeEEECCcCHHH
Confidence 999999999999999999999999999999999999997764
No 40
>KOG0464|consensus
Probab=100.00 E-value=5e-61 Score=503.53 Aligned_cols=456 Identities=26% Similarity=0.400 Sum_probs=399.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccc--cccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~--~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 288 (793)
+||+|++|.++||||..+++++.+|.++..+.+. +++.|....|++||||+.+....++|+|+++|+||||||.||.-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 7999999999999999999999999998888775 68999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhh-------------
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDK------------- 355 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~------------- 355 (793)
+++|.++..|+++.|+|++.|+++||..+|+++.++++|.++++||||+..++|+..++.+++.+..
T Consensus 118 everclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~lpi~eak 197 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQLPIGEAK 197 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEecccccc
Confidence 9999999999999999999999999999999999999999999999999999999988888876531
Q ss_pred ---------------hc---c--------------c-------------------------------------cc-----
Q psy1760 356 ---------------LC---A--------------T-------------------------------------EE----- 361 (793)
Q Consensus 356 ---------------l~---~--------------~-------------------------------------~~----- 361 (793)
++ . + .+
T Consensus 198 ~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i~a~ 277 (753)
T KOG0464|consen 198 GFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKIDAE 277 (753)
T ss_pred cccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccccccCHH
Confidence 00 0 0 00
Q ss_pred ------------ccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcC-------CCCCCceEEEEEEeeeCC
Q psy1760 362 ------------QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD-------NSNNPLQLQIISLEYSSY 422 (793)
Q Consensus 362 ------------~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~-------~~~~p~~~~V~~~~~~~~ 422 (793)
+...|+.++||.++- |+++|++++..++|+|.. +....+.++.|++.+|..
T Consensus 278 elksai~~lt~aq~a~~i~cgsaiknk----------giqplldavtmylpspeernyeflqwykddlcalafkvlhdkq 347 (753)
T KOG0464|consen 278 ELKSAIHELTCAQKAAPILCGSAIKNK----------GIQPLLDAVTMYLPSPEERNYEFLQWYKDDLCALAFKVLHDKQ 347 (753)
T ss_pred HHHHHHHHHhhhhhhcceehhhhhccc----------CccchhhhhhhccCChhhcchHHHhhhhhhHHHHhhhhhcccc
Confidence 001688899998876 999999999999999964 345678889999999999
Q ss_pred CceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCeEeCCC----
Q psy1760 423 LGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPS---- 498 (793)
Q Consensus 423 ~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~~---- 498 (793)
.|.+++.|||+|+|+..-.|.+.+. ...+++.+++.....+..+++++.||+|...+|++...+||||....
T Consensus 348 rg~l~fmriysgsi~~~~ai~nin~----~~se~~~kl~~pfade~~~i~qlsagnialt~glk~tatgdtivaskasa~ 423 (753)
T KOG0464|consen 348 RGPLSFMRIYSGSIHNNLAIFNING----MCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHTATGDTIVASKASAE 423 (753)
T ss_pred cCceeEEEEecccccCceeeeeccc----ccccchHhhhccchhhhhhhhhcccccEEEEecceeeccCCeEEecchhHH
Confidence 9999999999999999998887654 35678999998888899999999999999999999999999995432
Q ss_pred --------------------CCCCCCCCccCCCceEEEEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecC
Q psy1760 499 --------------------KPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKH 558 (793)
Q Consensus 499 --------------------~~~~l~~~~~~~P~~~~~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~ 558 (793)
+..-+..+++|.|++...+.|.+- .+ .+++..+|.-+..|||||++..+.+
T Consensus 424 aa~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~---~k------~~d~ehale~lqredpslkir~d~d 494 (753)
T KOG0464|consen 424 AAAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSL---RK------LNDFEHALECLQREDPSLKIRFDPD 494 (753)
T ss_pred HHHHHhhccchhhccCCccccceeeecccCCCceEEEeccCccc---cc------chhHHHHHHHHhccCCceeEEecCC
Confidence 112356689999999999986431 11 2456778888888999999999999
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhc-CceEEEecCEEEEEEe------------c-------------------------
Q psy1760 559 DDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFKTL------------N------------------------- 600 (793)
Q Consensus 559 ~~~~~~v~g~GelhL~il~e~lrre-g~e~~vs~P~V~yre~------------~------------------------- 600 (793)
+++ .++-||||||++++-.|++|+ |++.-+++-+|.|||. +
T Consensus 495 sgq-til~~~gelhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~tqa~ip 573 (753)
T KOG0464|consen 495 SGQ-TILCGMGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEETQAHIP 573 (753)
T ss_pred CCc-eEEeccchhhHHHHHHHHHhhcCchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEeeecccccccc
Confidence 999 999999999999999999987 9999999999999984 0
Q ss_pred ----------------------------------C---------------------------------------------
Q psy1760 601 ----------------------------------G--------------------------------------------- 601 (793)
Q Consensus 601 ----------------------------------g--------------------------------------------- 601 (793)
|
T Consensus 574 ~kkiefe~~es~n~~~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk~n~alisac~qkcvqealkkad 653 (753)
T KOG0464|consen 574 FKKIEFELAESANEGLLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGKINPALISACAQKCVQEALKKAD 653 (753)
T ss_pred ceeEEeeccccccchhhhhHHHHHHhhHHHHHhcCCccCCchhheeEeeEEEEecCCcCCHHHHHHHHHHHHHHHHhhhh
Confidence 0
Q ss_pred -eeeCeEEEEEEEeCC-cchHHHHHHhhccCceeeeeeeccCCeE-EEEEEechhhhcchHHHHcccccceEEEEeEecc
Q psy1760 602 -ELYEPYENLFVDIEE-INQGIIMQKLNYRGGDLKNIEINEKERV-RLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEE 678 (793)
Q Consensus 602 -~llEP~~~~~i~vp~-e~~G~v~~~l~~rrG~~~~~~~~~~~~~-~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~ 678 (793)
+++||.|+++|++-. +|...|+.+|.+|||.+...+...+..+ +|-+.+|++|+.||+..||++|+|.|.|..+|.+
T Consensus 654 ~~l~eplm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri~~~lplaei~~~s~~lrtltsg~a~~ale~~~ 733 (753)
T KOG0464|consen 654 KQLLEPLMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIEGLSKTLRTLTSGFADFALEFRG 733 (753)
T ss_pred HHHhhhhhheEEEEecCCCccHHHHHHHHhhccchhcccccccchheeeEeeeHHHhhcHHHHHHHHhcccceEEEEecc
Confidence 789999999999977 9999999999999999999987544444 6999999999999999999999999999999999
Q ss_pred eEeccCCCcCCC
Q psy1760 679 YAPFYNKSKYDL 690 (793)
Q Consensus 679 Y~~~~~~~~~~i 690 (793)
|+.+..++.-++
T Consensus 734 yqamn~~dk~~i 745 (753)
T KOG0464|consen 734 YQAMNEHDKMEI 745 (753)
T ss_pred hhhcChHHHHHH
Confidence 999875544444
No 41
>cd02867 PseudoU_synth_TruB_4 PseudoU_synth_TruB_4: Pseudouridine synthase homolog 4. This group consists of Eukaryotic TruB proteins similar to Saccharomyces cerevisiae Pus4. S. cerevisiae Pus4, makes psi55 in the T loop of both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi).
Probab=100.00 E-value=6e-60 Score=499.17 Aligned_cols=200 Identities=34% Similarity=0.456 Sum_probs=193.9
Q ss_pred eEEEeeCCCCCChHHHHHHHHHHhcc-----------------------------ccccCCCCCCCCCcceeeeeecccc
Q psy1760 11 VVIPKYKPYGLSSNNALKKIKYLLNA-----------------------------KKVGYTGTLDPFATGLLPLCFGEAT 61 (793)
Q Consensus 11 g~~~~~Kp~g~ts~~~v~~~~~~~~~-----------------------------~k~gh~gtLDp~a~G~l~~~~g~~t 61 (793)
|||+||||.|||||+||+++|++|+. +||||+|||||+||||||||+|+||
T Consensus 1 Gil~i~KP~G~TS~~vv~~lk~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KiGH~GTLDPlAsGVLvvgvG~aT 80 (312)
T cd02867 1 GVFAINKPSGITSAQVLNDLKPLFLNSALFKDKIQRAVAKRGKKARRRKGRKRSKLKIGHGGTLDPLATGVLVVGVGAGT 80 (312)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHhcccccccchhhhhhhhhhhhhhhhccccccccccccccccCCccceeEEEEECcHH
Confidence 89999999999999999999999985 7999999999999999999999999
Q ss_pred cccchhccCCceEEEEEEEceeeccCCCcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhcc
Q psy1760 62 KFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARS 141 (793)
Q Consensus 62 k~~~~~~~~~K~Y~~~~~~g~~t~t~d~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~ 141 (793)
|+++|+++.+|+|+++++||.+|||+|++|+|+++++..++|.+++++++++|.|++.|+||+|||+|+||+|||||||+
T Consensus 81 K~l~~~l~~~K~Y~~~~~lG~~TdT~D~eG~Ii~~~~~~~it~e~i~~~l~~F~G~i~Q~PP~ySAvKv~GkrlYeyAR~ 160 (312)
T cd02867 81 KQLQDYLSCSKTYEATGLFGASTTTYDREGKILKKKPYSHITREDIEEVLAKFRGDIKQVPPLYSALKMDGKRLYEYARE 160 (312)
T ss_pred HHHHHHhcCCceEEEEEEeCCcccCCCCCCCEEEecCCCCCCHHHHHHHHHhcceeeeeeCcchheeeeCCHHHHHHHhC
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred Ccccccc--ceeEEEEEEEEEeec--CCceeeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhcccccccc
Q psy1760 142 GITIKRK--LRYIKIYKITIIDYT--IPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLD 210 (793)
Q Consensus 142 g~~v~~~--~r~v~i~~~~~~d~~--~~~~~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le 210 (793)
|++++++ +|.|+||++++++|. .+.+.|++.||+|||||+|++|||..|++++++..|+|++.|.|.++
T Consensus 161 G~~v~~~~~~R~V~I~~~~l~~~~~~~~~~~~~v~cskGTYIRsL~~Dig~~Lg~~a~~~~L~Rt~~g~f~~~ 233 (312)
T cd02867 161 GKPLPRPIERRQVVVSELLVKDWIEPGPLFTRTVEEEGKQYERSVVKMLGKELKTFAEVTELTATAEGDPVEE 233 (312)
T ss_pred CccccCCCCCceEEEEEEEEEeccCCCCeEEEEEEeCCcCCHHHHHHHHHHHhCCCeEEEEEEeeeecCcccc
Confidence 9999987 899999999999987 37899999999999999999999999999999999999999999654
No 42
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=1.9e-56 Score=513.45 Aligned_cols=362 Identities=24% Similarity=0.359 Sum_probs=321.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccc------cccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN------ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA 284 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~------~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~ 284 (793)
+||+|+||+|+|||||+++|+..++.+...+.+. ..++|+.+.|++||+|+......+.|+++++++||||||.
T Consensus 11 Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~ 90 (526)
T PRK00741 11 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHE 90 (526)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCch
Confidence 7999999999999999999999888877665543 2458999999999999999999999999999999999999
Q ss_pred cchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhh--------
Q psy1760 285 DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL-------- 356 (793)
Q Consensus 285 df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l-------- 356 (793)
||..++.++++.+|++|+|+|+.+|+..+|+.+|+.+...++|+|+|+||+|+..+++.++++++++.|..-
T Consensus 91 df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~~~Pi 170 (526)
T PRK00741 91 DFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAPITWPI 170 (526)
T ss_pred hhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCCeeEEecc
Confidence 999999999999999999999999999999999999999999999999999999988888888887765310
Q ss_pred ------------------------cc-----------cccc-----------------------------------cCcc
Q psy1760 357 ------------------------CA-----------TEEQ-----------------------------------LDFP 366 (793)
Q Consensus 357 ------------------------~~-----------~~~~-----------------------------------l~~P 366 (793)
+. +++. .-+|
T Consensus 171 g~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~~~~~P 250 (526)
T PRK00741 171 GMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFLAGELTP 250 (526)
T ss_pred ccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHhcCCeEE
Confidence 00 0000 0189
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCC---------CCCCceEEEEEEe---eeCCCceEEEEEEeec
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN---------SNNPLQLQIISLE---YSSYLGKIGIGRILSG 434 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~---------~~~p~~~~V~~~~---~~~~~G~v~~grV~sG 434 (793)
|+++||++++ |+++||++|.+++|+|... .+.+|.++|||+. .+++.|+++++||+||
T Consensus 251 V~~GSA~~n~----------Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvRV~sG 320 (526)
T PRK00741 251 VFFGSALNNF----------GVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVRVCSG 320 (526)
T ss_pred EEEeecccCc----------CHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEEEecc
Confidence 9999999998 9999999999999999532 2467999999998 4569999999999999
Q ss_pred ccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCeEeCCCCCCCCCCCccCCCceE
Q psy1760 435 RIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLT 514 (793)
Q Consensus 435 ~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~~~~~~l~~~~~~~P~~~ 514 (793)
+++.|+.|++... | ++.|+.+++.+.|.++.++++|.|||||++.|++++.+|||||+.+ +..++++++++|+++
T Consensus 321 ~l~~g~~v~~~~~--~--k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~~~GDTL~~~~-~~~~~~i~~~~P~~~ 395 (526)
T PRK00741 321 KFEKGMKVRHVRT--G--KDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGDTFTQGE-KLKFTGIPNFAPELF 395 (526)
T ss_pred EECCCCEEEeccC--C--ceEEecceEEEecCCceECceeCCCCEEEEECCCCCccCCCccCCC-ccccCCCCCCCccEE
Confidence 9999999998766 3 4689999999999999999999999999999999999999999866 667788999999999
Q ss_pred EEEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHhc-CceEEEecCE
Q psy1760 515 INFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPR 593 (793)
Q Consensus 515 ~~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrre-g~e~~vs~P~ 593 (793)
+++.+.++ ++ ..||.++|.|+++|| ++++.+++++++ ++|+|||+|||+|+++||+++ |+++.+++|+
T Consensus 396 ~~v~p~~~---~d------~~kl~~aL~~L~eED-~l~~~~~~~t~e-~il~g~G~lhleV~~~RL~~ey~v~v~~~~~~ 464 (526)
T PRK00741 396 RRVRLKNP---LK------QKQLQKGLVQLSEEG-AVQVFRPLDNND-LILGAVGQLQFEVVAHRLKNEYNVEAIYEPVG 464 (526)
T ss_pred EEEEECCc---hh------HHHHHHHHHHHhhcC-CeEEEECCCCCC-EEEEEEeHHHHHHHHHHHHHHhCCEEEEecCC
Confidence 99998764 33 368999999999999 599999999999 999999999999999999975 9999999999
Q ss_pred EEEEE
Q psy1760 594 VIFKT 598 (793)
Q Consensus 594 V~yre 598 (793)
|++-.
T Consensus 465 v~~~r 469 (526)
T PRK00741 465 VATAR 469 (526)
T ss_pred ccEEE
Confidence 99864
No 43
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=1.5e-55 Score=506.31 Aligned_cols=361 Identities=22% Similarity=0.322 Sum_probs=321.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccc------cccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN------ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA 284 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~------~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~ 284 (793)
+||+|+||+|+|||||+++|+..++.+...+.+. .+++|+.+.|++||+|+.+....+.|+++.++|||||||.
T Consensus 12 RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~ 91 (527)
T TIGR00503 12 RTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHE 91 (527)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChh
Confidence 7999999999999999999999888877665543 3778999999999999999999999999999999999999
Q ss_pred cchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhh--------
Q psy1760 285 DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL-------- 356 (793)
Q Consensus 285 df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l-------- 356 (793)
+|..++.++++.+|++|+|+|+..++..++..+|+.+...++|+|+|+||+|+..+++.++++++++.+...
T Consensus 92 df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~~~~~~PI 171 (527)
T TIGR00503 92 DFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAPITWPI 171 (527)
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCCccEEEEe
Confidence 999999999999999999999999999999999999999999999999999998888888888887765320
Q ss_pred ---------------------c---c-----------cc--------------------------c---------ccCcc
Q psy1760 357 ---------------------C---A-----------TE--------------------------E---------QLDFP 366 (793)
Q Consensus 357 ---------------------~---~-----------~~--------------------------~---------~l~~P 366 (793)
. . .+ + ..-+|
T Consensus 172 g~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~P 251 (527)
T TIGR00503 172 GCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFHGGEMTP 251 (527)
T ss_pred cCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHHhcCCeeE
Confidence 0 0 00 0 00179
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCC---------CCCCceEEEEEEee--e-CCCceEEEEEEeec
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN---------SNNPLQLQIISLEY--S-SYLGKIGIGRILSG 434 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~---------~~~p~~~~V~~~~~--~-~~~G~v~~grV~sG 434 (793)
|+++||.++. |++.||+.|.+++|+|... .+++|.++|||+.. | ++.|+++++||+||
T Consensus 252 V~~GSA~~n~----------Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf~RV~sG 321 (527)
T TIGR00503 252 VFFGTALGNF----------GVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAFMRVVSG 321 (527)
T ss_pred EEEeecccCc----------cHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEEEEEeee
Confidence 9999999998 9999999999999999642 25789999999988 7 59999999999999
Q ss_pred ccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCeEeCCCCCCCCCCCccCCCceE
Q psy1760 435 RIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLT 514 (793)
Q Consensus 435 ~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~~~~~~l~~~~~~~P~~~ 514 (793)
+|+.|+.|++.+. | ++.|+.+++.+.|.++.++++|.|||||++.|++++.+|||||+.+ +..++++++++|+++
T Consensus 322 ~l~~g~~v~~~~~--~--k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~GDtl~~~~-~~~~~~i~~~~P~~~ 396 (527)
T TIGR00503 322 KYEKGMKLKHVRT--G--KDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGDTFTQGE-KIKFTGIPNFAPELF 396 (527)
T ss_pred EEcCCCEEEecCC--C--CcEEecchhhhhcCCceEcceeCCCCEEEEECCCCcccCCEecCCC-ceeecCCCCCCcceE
Confidence 9999999998766 3 4689999999999999999999999999999999999999999844 567788889999999
Q ss_pred EEEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHh-cCceEEEecCE
Q psy1760 515 INFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRR-EGYELSVSRPR 593 (793)
Q Consensus 515 ~~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrr-eg~e~~vs~P~ 593 (793)
+++.+.++ ++ ..||.++|.|+.+||| +++.+++++++ ++|+|+|+|||+|+++||++ +|+|+.+++|+
T Consensus 397 ~~v~~~~~---~d------~~kl~~aL~~L~eED~-l~v~~~~~t~e-~il~g~GelhleV~~~RL~~ey~v~v~~~~~~ 465 (527)
T TIGR00503 397 RRIRLKDP---LK------QKQLLKGLVQLSEEGA-VQVFRPLDNND-LIVGAVGVLQFDVVVYRLKEEYNVEARYEPVN 465 (527)
T ss_pred EEEEECCh---hh------HHHHHHHHHHHHhhCC-eEEEEcCCCCC-EEEEEEeHHHHHHHHHHHHHHhCCeEEEeCCC
Confidence 99998764 32 3689999999999998 99999999999 99999999999999999996 59999999999
Q ss_pred EEEE
Q psy1760 594 VIFK 597 (793)
Q Consensus 594 V~yr 597 (793)
|+.-
T Consensus 466 v~~~ 469 (527)
T TIGR00503 466 VATA 469 (527)
T ss_pred ceEE
Confidence 9874
No 44
>KOG0469|consensus
Probab=100.00 E-value=1.6e-55 Score=470.92 Aligned_cols=465 Identities=26% Similarity=0.396 Sum_probs=381.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee----------------cCeE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY----------------NGTR 274 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~----------------~~~~ 274 (793)
||+.+++|++||||||.+.|..+++.+.....-..+++|....|++|||||.+...++.+ ++..
T Consensus 20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL 99 (842)
T KOG0469|consen 20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL 99 (842)
T ss_pred ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence 799999999999999999999999988766666789999999999999999998887654 2578
Q ss_pred EEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHh
Q psy1760 275 INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFD 354 (793)
Q Consensus 275 i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~ 354 (793)
||+||.|||.||+.|+-.+++..|++++|||+.+|+..||..++++|....+.+++|+||+|+.--..+--.+++.+.|.
T Consensus 100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~EeLyqtf~ 179 (842)
T KOG0469|consen 100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQEELYQTFQ 179 (842)
T ss_pred EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999853222222233333333
Q ss_pred hh-----------cc---ccccc---CccEEEeecCCCCcccc-----------------------------cc------
Q psy1760 355 KL-----------CA---TEEQL---DFPVIYTSALHGYANEN-----------------------------SK------ 382 (793)
Q Consensus 355 ~l-----------~~---~~~~l---~~Pvi~~SA~~g~~~~~-----------------------------~~------ 382 (793)
.. +. .+.++ .-.|-++|++.||+..- +.
T Consensus 180 R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~~ktkk~~~ 259 (842)
T KOG0469|consen 180 RIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFNPKTKKWSK 259 (842)
T ss_pred HHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccccCccCCcccc
Confidence 21 11 00000 01266789999886310 00
Q ss_pred ---------------------------------------------------cc---------------cCCchhhHHHHH
Q psy1760 383 ---------------------------------------------------AR---------------QGNMIPLFEAIL 396 (793)
Q Consensus 383 ---------------------------------------------------~~---------------~~gi~~Ll~~I~ 396 (793)
++ -..-+.||+.|.
T Consensus 260 s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wLPAadallemIa 339 (842)
T KOG0469|consen 260 SATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWLPAADALLEMIA 339 (842)
T ss_pred cccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHHhcchHHHHHHHHH
Confidence 00 001267888888
Q ss_pred hhcCcCc-------------------------CCCCCCceEEEEEEeeeCCCce-EEEEEEeecccccCCEEEEecCC--
Q psy1760 397 KYVPVHK-------------------------DNSNNPLQLQIISLEYSSYLGK-IGIGRILSGRIKSLQDVVIMNGP-- 448 (793)
Q Consensus 397 ~~lp~p~-------------------------~~~~~p~~~~V~~~~~~~~~G~-v~~grV~sG~lk~G~~v~~~~~~-- 448 (793)
-++|+|. +|+++|+.|+|++....+..|| +++||||||++..|+.+.+...+
T Consensus 340 lhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G~KvRiqgPnY~ 419 (842)
T KOG0469|consen 340 LHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTGLKVRIQGPNYV 419 (842)
T ss_pred hhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeeecceeccCcEEEEeCCCCC
Confidence 8999983 4789999999999988887776 79999999999999999998763
Q ss_pred CCCCCcee---EeEEEEeecCceEEecccCCCcEEEEecccee-ecCCeEeCCCCCCCCCCCccC-CCceEEEEEecCCC
Q psy1760 449 DDKPNKAK---INQIRVFKGLDRVLVNEALSGDIVLITGIEEI-CIGSTICDPSKPNGLPMLNID-EPTLTINFMVNNSP 523 (793)
Q Consensus 449 ~g~~~~~k---V~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i-~iGdtl~~~~~~~~l~~~~~~-~P~~~~~~~~~~~p 523 (793)
.|+....- |...-.++|...++++...||+|+++.|+++. ..+-||+..+....+..++|. .|++.+++.+++.
T Consensus 420 PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~AHNmrvMKFSVSPVV~VAVe~Knp- 498 (842)
T KOG0469|consen 420 PGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEAAHNMRVMKFSVSPVVRVAVEAKNP- 498 (842)
T ss_pred CCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehhhhccceEEEeeccceEEEEEecCCh-
Confidence 23322211 22222577888999999999999999999985 457788877666566666665 6999999987653
Q ss_pred CCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHhc--CceEEEecCEEEEEEe--
Q psy1760 524 LAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE--GYELSVSRPRVIFKTL-- 599 (793)
Q Consensus 524 ~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrre--g~e~~vs~P~V~yre~-- 599 (793)
. +..||.+.|.|++++||...+..+ +.++ .+|.|-|||||+|++..|... ++.+..|+|-|.|||+
T Consensus 499 ---~-----DLpKLvEGLkrLakSDP~v~~~~~-esGe-hiiAgaGeLHLEICLkDLeedhA~iPlk~sdPvVsYrEtvs 568 (842)
T KOG0469|consen 499 ---A-----DLPKLVEGLKRLAKSDPMVQCIIE-ESGE-HIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYRETVS 568 (842)
T ss_pred ---h-----hhHHHHHHHHHHhccCCeEEEEec-cCCc-eEEeccchhhHHHHHhhHhhcccCCceecCCCeeeeecccc
Confidence 1 457899999999999999998887 5678 999999999999999999864 9999999999999995
Q ss_pred ----------------------------------------------------------------------c---------
Q psy1760 600 ----------------------------------------------------------------------N--------- 600 (793)
Q Consensus 600 ----------------------------------------------------------------------~--------- 600 (793)
+
T Consensus 569 ~~ss~~~lsKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIWCfgPd~tg~Nll~D 648 (842)
T KOG0469|consen 569 EESSQTCLSKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIWCFGPDGTGPNLLVD 648 (842)
T ss_pred cccchhhhccCCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhheeeEeCCCCCCCcEEEe
Confidence 0
Q ss_pred -------------------------C------------------------------------------------eeeCeE
Q psy1760 601 -------------------------G------------------------------------------------ELYEPY 607 (793)
Q Consensus 601 -------------------------g------------------------------------------------~llEP~ 607 (793)
| .++||+
T Consensus 649 ~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ya~~l~A~P~l~EPv 728 (842)
T KOG0469|consen 649 QTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLYASVLTAGPILQEPV 728 (842)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHHHHHHHhcCceecCce
Confidence 0 889999
Q ss_pred EEEEEEeCCcchHHHHHHhhccCceeeeeeec-cCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEeccCCC
Q psy1760 608 ENLFVDIEEINQGIIMQKLNYRGGDLKNIEIN-EKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKS 686 (793)
Q Consensus 608 ~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~-~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~~~~ 686 (793)
+.++|+||+.++|.|++.|++|||.+.+.+.. +.....+++.+|+.|.+||..+|||.|+|++.-++.|+||++.+
T Consensus 729 ylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAfpq~vFdHws~lp--- 805 (842)
T KOG0469|consen 729 YLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQMVFDHWSILP--- 805 (842)
T ss_pred EEEEEeCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccccccchhhhcccCCccccceeeeccccCC---
Confidence 99999999999999999999999999998865 56689999999999999999999999999999999999999999
Q ss_pred cCCC
Q psy1760 687 KYDL 690 (793)
Q Consensus 687 ~~~i 690 (793)
|+.
T Consensus 806 -gdp 808 (842)
T KOG0469|consen 806 -GDP 808 (842)
T ss_pred -CCC
Confidence 665
No 45
>cd02868 PseudoU_synth_hTruB2_like PseudoU_synth_ hTRUB2_Like: Pseudouridine synthase, humanTRUB2_like. This group consists of eukaryotic pseudouridine synthases similar to human TruB pseudouridine synthase homolog 2 (TRUB2). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi).
Probab=100.00 E-value=5.2e-53 Score=431.67 Aligned_cols=203 Identities=24% Similarity=0.290 Sum_probs=194.9
Q ss_pred eEEEeeCCCCCChHHHHHHHHH----HhccccccCC-CCCCCCCcceeeeeecccccccchhccC--CceEEEEEEEcee
Q psy1760 11 VVIPKYKPYGLSSNNALKKIKY----LLNAKKVGYT-GTLDPFATGLLPLCFGEATKFSNYLSEA--DKYYEAIIHLGIT 83 (793)
Q Consensus 11 g~~~~~Kp~g~ts~~~v~~~~~----~~~~~k~gh~-gtLDp~a~G~l~~~~g~~tk~~~~~~~~--~K~Y~~~~~~g~~ 83 (793)
|+|+||||+||+|++++..+++ .++.+|+||+ |||||+|||||++|+|++||+++++.+. +|+|+++++||.+
T Consensus 1 GilvvnKP~Gi~s~~~~~~~~~~l~~~~~~~k~~~~vhrLD~~aSGvl~~a~~~~tkl~~~~~~~~~~K~Y~~~~~lg~~ 80 (226)
T cd02868 1 GLFAVYKPPGVHWKHVRDTIESNLLKYFPEDKVLVGVHRLDAFSSGVLVLGVNHGNKLLSHLYSNHPTRVYTIRGLLGKA 80 (226)
T ss_pred CEEEEEcCCCCChhHHHHHHHHHHHHHccccceeeEccccCCCCceEEEEEeChhHhHHHHHHhcCCCeEEEEEEEEccc
Confidence 7999999999999999998776 4577899999 9999999999999999999999999984 7999999999999
Q ss_pred eccCCCcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeec
Q psy1760 84 TETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYT 163 (793)
Q Consensus 84 t~t~d~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~ 163 (793)
|||+|++|+|++++++.++|.+++++++.+|+|.+.|.||.|||+|+||+|||+|||+|+++++++|+++||++++++|+
T Consensus 81 TdT~D~~G~v~~~~~~~~it~~~i~~~l~~f~g~~~q~~p~~sa~kv~GkraYelAR~G~~ve~~~r~v~I~~i~l~~~~ 160 (226)
T cd02868 81 TENFFHTGRVIEKTTYDHITREKIERLLAVIQSGHQQKAFELCSVDDQSQQAAELAARGLIRPADKSPPIIYGIRLLEFR 160 (226)
T ss_pred cCCCCCCCCEEEecCCCCCCHHHHHHHHHHhhCCceEECCceEEEeeCCHHHHHHHHCCCccCCCCcceEEEEEEEEEec
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeEEeccchh--HHHHHHHHHhhhhccchHHHHHHhhcccccccccce
Q psy1760 164 IPYLTLRIHCSKGT--YIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNI 213 (793)
Q Consensus 164 ~~~~~~~~~~s~gt--yIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nI 213 (793)
.|.+.|++.||+|| |||+|++|||..|++++|+..|||++.|+|+++..+
T Consensus 161 ~p~~~~~v~cskGT~~YIRsL~~Dig~~Lg~~a~~~~L~R~~~G~f~~~~a~ 212 (226)
T cd02868 161 PPEFTLEVQCINETQEYLRKLIHEIGLELRSSAVCTQVRRTRDGPFTVDDAL 212 (226)
T ss_pred CCeEEEEEEEECCCHHHHHHHHHHHHHHhCCcEEEEEEEeeEECCCCHHHcc
Confidence 99999999999999 999999999999999999999999999999877655
No 46
>COG0130 TruB Pseudouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9e-53 Score=437.89 Aligned_cols=181 Identities=45% Similarity=0.769 Sum_probs=172.3
Q ss_pred CCCCCCcc---eEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEE
Q psy1760 3 LPSISPVS---VVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIH 79 (793)
Q Consensus 3 ~~~~~~~~---g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~ 79 (793)
.|.-++++ |||++|||+||||||||+|+||+|+.+|+||+|||||+||||||||+|+|||+++|+++.+|+|+|+++
T Consensus 5 ~~~~~~i~~~~Gil~ldKP~G~tS~~~v~~vkkil~~~K~GH~GTLDP~atGvLpi~ig~aTKl~~~l~~~~K~Y~a~~~ 84 (271)
T COG0130 5 YPEKRPIEIYIGVINLDKPPGPTSHEVVAWVKRILGVEKAGHGGTLDPLATGVLPICLGEATKLVQYLLDADKEYVATVR 84 (271)
T ss_pred CccccccccccceEEeeCCCCCCHHHHHHHHHHHhCccccccccccCCcccceEEEEechhHhHHHHHhhCCcEEEEEEE
Confidence 35557788 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EceeeccCCCcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEE
Q psy1760 80 LGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITI 159 (793)
Q Consensus 80 ~g~~t~t~d~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~ 159 (793)
||.+|| +++++++++.+|+|+|.|+||+|||+| +++++ |.|.|+++..
T Consensus 85 lG~~t~-----------------~~e~i~~~l~~F~G~I~Q~PP~~SAvK-------------~~v~~--R~V~i~~l~~ 132 (271)
T COG0130 85 LGDQTD-----------------SEEEVRAALEAFTGEIYQIPPMFSAVK-------------REVER--RKITIYDLLE 132 (271)
T ss_pred eCCcCC-----------------CHHHHHHHHHhcceeeEecCCchhhcc-------------ceEee--EEEEEEEeee
Confidence 999888 689999999999999999999999998 66777 9999999999
Q ss_pred EeecCCceeeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhcccccccccceee
Q psy1760 160 IDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAI 215 (793)
Q Consensus 160 ~d~~~~~~~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIaI 215 (793)
+++..+.+.|++.||+|||||+|++|||..|+|++|+..|||+++|+|.++..+.+
T Consensus 133 ~~~~~~~~~~~v~CskGTYIRtL~~DlG~~LG~gahm~~LrRt~~g~f~~~~~~~l 188 (271)
T COG0130 133 LDFDRNLVTLRVECSKGTYIRTLARDLGEALGCGAHMSELRRTRVGPFSEEDAVTL 188 (271)
T ss_pred ccCCCceEEEEEEEecCcCHHHHHHHHHHHHCCccchhhhccccccccccccccch
Confidence 99999999999999999999999999999999999999999999999988776654
No 47
>PF01509 TruB_N: TruB family pseudouridylate synthase (N terminal domain); InterPro: IPR002501 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. This entry represents pseudouridine synthase TruB, as well as Cbf5p that modifies rRNA [].; GO: 0006396 RNA processing; PDB: 1SGV_B 2AUS_C 3UAI_A 3U28_A 2RFK_A 3LWV_A 3HJY_A 3HAX_A 3LWO_A 3HAY_A ....
Probab=100.00 E-value=8.6e-50 Score=383.42 Aligned_cols=149 Identities=45% Similarity=0.750 Sum_probs=138.8
Q ss_pred HHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccCCCcceEeeccCCCCCCHHHHHHH
Q psy1760 31 KYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKI 110 (793)
Q Consensus 31 ~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~d~~g~~~~~~~~~~~t~~~~~~a 110 (793)
||.++.+||||+|||||+||||||||+|+|||+++|++..+|+|+++++||.+|||+|++|+|+++++++++|.++++++
T Consensus 1 r~~~~~~KvGH~GTLDP~AsGvL~v~vg~~Tkl~~~l~~~~K~Y~~~~~lG~~TdT~D~~G~v~~~~~~~~it~e~l~~~ 80 (149)
T PF01509_consen 1 RRILGIKKVGHGGTLDPFASGVLVVGVGKATKLLSYLQNSDKEYVATIRLGVETDTYDIEGEVTETKPYDHITEEDLEKV 80 (149)
T ss_dssp HHHTTBSSEEESS-SSTT-EEEEEEEEGGGGGGHHHHTTSEEEEEEEEEESSEETTSBTTSSEEEE---TT--HHHHHHH
T ss_pred CcccCcceeccccccCCcceEEEEEEECCcchHHHHhhccCCEEEEEEEEEEEeCCcceeeeEEEeeccccCCHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCCceeeEEeccchhHH
Q psy1760 111 LINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYI 179 (793)
Q Consensus 111 l~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~~~~~~~~~s~gtyI 179 (793)
|++|+|+++|+||+|||+|+||+|||+|||+|+++++++|++.||++++++|+.+.+.|++.||+||||
T Consensus 81 l~~f~G~~~Q~pP~ySAvki~G~raY~lAR~G~~v~~~~r~v~I~~i~l~~~~~~~~~~~v~cs~GTYi 149 (149)
T PF01509_consen 81 LAKFQGEIEQVPPMYSAVKINGKRAYELARKGEEVELPPRPVTIYSIELLSFNPPEFTFEVHCSKGTYI 149 (149)
T ss_dssp HHHTSEEEEES-SSSSSSECTTCEHHHHHHTTSSTSSS-EEEEEEEEEEEEEETTEEEEEEEECTTTTH
T ss_pred HHhCcCCEeeeCchheeEcCCCccHHHHHHCCCccCCCCeeEEEEEEEEEEEcCCeEEEEEEEcCcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999997
No 48
>cd02572 PseudoU_synth_hDyskerin PseudoU_synth_hDyskerin_Like: Pseudouridine synthase, human dyskerin like. This group consists of eukaryotic and archeal pseudouridine synthases similar to human dyskerin, Saccharomyces cerevisiae Cbf5, and Drosophila melanogaster Mfl (minifly protein). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactor is required. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. D. melanogaster mfl hosts in its fourth intron, a box H/AC snoRNA gene. In addition dyskerin is likely to have a structural role in the telomerase complex. Mutations in human dyskerin cause X-linked dyskeratosis congenitas. Mutations in Drosophila Mfl r
Probab=100.00 E-value=1.2e-49 Score=395.40 Aligned_cols=170 Identities=38% Similarity=0.598 Sum_probs=162.0
Q ss_pred ceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccCCC
Q psy1760 10 SVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDI 89 (793)
Q Consensus 10 ~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~d~ 89 (793)
+|||+||||.||||||||+++||.++.|||||+|||||+||||||+|+|+|||+++|++..+|+|+|+++||..
T Consensus 2 ~g~l~i~Kp~g~tS~~~v~~~k~~~~~kkvGH~GTLDp~A~GvLiv~~g~~Tk~~~~~~~~~K~Y~a~v~~g~~------ 75 (182)
T cd02572 2 YGVINLDKPSGPSSHEVVAWIKRILGVEKTGHSGTLDPKVTGCLPVCIDRATRLVKSQQEAGKEYVCVMRLHDD------ 75 (182)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhCCCccCcCCCCCCcCeeEEEEEECHHhhhhHHHhCCCCEEEEEEEECCc------
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999943
Q ss_pred cceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecC--Cce
Q psy1760 90 EGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI--PYL 167 (793)
Q Consensus 90 ~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~--~~~ 167 (793)
+|++++++++++|+|.+.|+||+|||+| +++|++.||++++++|+. +.+
T Consensus 76 ------------it~e~l~~~l~~f~G~i~Q~pP~~SA~K-----------------~~~R~v~I~~i~l~~~~~~~~~~ 126 (182)
T cd02572 76 ------------VDEEKVRRVLEEFTGAIFQRPPLISAVK-----------------RQLRVRTIYESKLLEYDGERRLV 126 (182)
T ss_pred ------------CCHHHHHHHHHHCCCcEEeeCCHhheec-----------------CCceEEEEEEEEEEEEcCCCcEE
Confidence 7899999999999999999999999986 368999999999999988 789
Q ss_pred eeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccc-cccccee
Q psy1760 168 TLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKL-TLDKNIA 214 (793)
Q Consensus 168 ~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f-~le~nIa 214 (793)
.|++.||+|||||+|++|||..|++++++..|||+++|+| .++..+.
T Consensus 127 ~~~v~cs~GTYIRsL~~dlg~~Lg~~a~l~~L~R~~~G~f~~~~~~~~ 174 (182)
T cd02572 127 LFRVSCEAGTYIRTLCVHIGLLLGVGAHMQELRRTRSGPFSEEDNMVT 174 (182)
T ss_pred EEEEEECCCcCHHHHHHHHHHHHCCCeEEEEEEeEEEcCcCchhcccc
Confidence 9999999999999999999999999999999999999999 7766554
No 49
>TIGR00425 CBF5 rRNA pseudouridine synthase, putative. This family, found in archaea and eukaryotes, includes the only archaeal proteins markedly similar to bacterial TruB, the tRNA pseudouridine 55 synthase. However, among two related yeast proteins, the archaeal set matches yeast YLR175w far better than YNL292w. The first, termed centromere/microtubule binding protein 5 (CBF5), is an apparent rRNA pseudouridine synthase, while the second is the exclusive tRNA pseudouridine 55 synthase for both cytosolic and mitochondrial compartments. It is unclear whether archaeal proteins found by this model modify tRNA, rRNA, or both.
Probab=100.00 E-value=5e-48 Score=415.14 Aligned_cols=171 Identities=38% Similarity=0.576 Sum_probs=163.4
Q ss_pred cceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccCC
Q psy1760 9 VSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 88 (793)
Q Consensus 9 ~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~d 88 (793)
.+|||+||||.||||||||+++||+|+.|||||+|||||+||||||||+|+|||+++|+++.+|+|+|+++||.
T Consensus 33 ~~G~l~i~KP~g~tS~~~v~~vr~~~~~kkvGH~GTLDP~A~GvL~v~~G~aTkl~~~~~~~~K~Y~~~v~lG~------ 106 (322)
T TIGR00425 33 SYGVVNLDKPSGPSSHEVVAWVRRILNVEKTGHGGTLDPKVTGVLPVCIERATRLVKSLQEAPKEYVCLMRLHR------ 106 (322)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHhcccccCCCCCCCCCCceEEEEEEChHhhccHHhccCCCEEEEEEEECC------
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999993
Q ss_pred CcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCCcee
Q psy1760 89 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLT 168 (793)
Q Consensus 89 ~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~~~~ 168 (793)
++|+++++++|++|.|++.|+||+|||+| +++|.++||++++++|+.+.+.
T Consensus 107 ------------~~~~~~l~~~l~~f~g~i~Q~pP~~SA~k-----------------~~~r~v~I~~~~l~~~~~~~~~ 157 (322)
T TIGR00425 107 ------------DAKEEDILRVLKEFTGRIFQRPPLKSAVK-----------------RQLRVRTIYESELLEKDGKDVL 157 (322)
T ss_pred ------------CCCHHHHHHHHHHcCCcEEeeCChheEEe-----------------ccCeEEEEEEEEEEEecCCeEE
Confidence 36889999999999999999999999986 4689999999999999988899
Q ss_pred eEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760 169 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA 214 (793)
Q Consensus 169 ~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa 214 (793)
|++.||+|||||+|++|||+.|++++|+..|||+++|+|.++..+.
T Consensus 158 ~~v~cskGTYIRsL~~Dig~~Lg~~a~~~~L~R~~~g~f~~~~a~~ 203 (322)
T TIGR00425 158 FRVSCEAGTYIRKLCVDIGEALGTGAHMQELRRTRSGCFGEDDMVT 203 (322)
T ss_pred EEEEeCCCcChHHHHHHHHHHHCCCEEEEEeEeEEECCcccccccc
Confidence 9999999999999999999999999999999999999998876654
No 50
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-46 Score=397.65 Aligned_cols=359 Identities=24% Similarity=0.368 Sum_probs=309.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccc------cccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN------ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA 284 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~------~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~ 284 (793)
+++||+.||++|||||.+.||...|++...+.+. ....|++..|++|||++.++...|+|+++.+||+|||||.
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 6889999999999999999999888887766653 4677999999999999999999999999999999999999
Q ss_pred cchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhh--------
Q psy1760 285 DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL-------- 356 (793)
Q Consensus 285 df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l-------- 356 (793)
||+..+.|.|..+|.||.||||..|+++||+.+++.|+..++|++-+|||+|+...++-+.++++.+.+.--
T Consensus 93 DFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~PitWPI 172 (528)
T COG4108 93 DFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPITWPI 172 (528)
T ss_pred ccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceecccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999998876310
Q ss_pred c----------------------c-------------cccc-----------------------------------cCcc
Q psy1760 357 C----------------------A-------------TEEQ-----------------------------------LDFP 366 (793)
Q Consensus 357 ~----------------------~-------------~~~~-----------------------------------l~~P 366 (793)
+ . .... --.|
T Consensus 173 G~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G~~TP 252 (528)
T COG4108 173 GMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAGELTP 252 (528)
T ss_pred cCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcCCccc
Confidence 0 0 0000 0179
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcC---------CCCCCceEEEEEEeee---CCCceEEEEEEeec
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD---------NSNNPLQLQIISLEYS---SYLGKIGIGRILSG 434 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~---------~~~~p~~~~V~~~~~~---~~~G~v~~grV~sG 434 (793)
|+++||+.++ |++.+|+.+.++.|+|.. ..+..|..+|||+... .+.-||++.||.||
T Consensus 253 VFFGSAl~NF----------GV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~SG 322 (528)
T COG4108 253 VFFGSALGNF----------GVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSG 322 (528)
T ss_pred eEehhhhhcc----------CHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEeccc
Confidence 9999999998 999999999999999963 2345699999998653 56789999999999
Q ss_pred ccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCeEeCCCCCCCCCCCccCCCceE
Q psy1760 435 RIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLT 514 (793)
Q Consensus 435 ~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~~~~~~l~~~~~~~P~~~ 514 (793)
.+..|+.+...+. | +..+++.-..|.+.+|+.+++|.|||||+|.+-..+.+|||++.. ....+++++.-.|-+.
T Consensus 323 kferGMkv~h~rt--G--K~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~~IGDT~t~G-e~l~f~giP~FaPE~f 397 (528)
T COG4108 323 KFERGMKVTHVRT--G--KDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGDTFTEG-EKLKFTGIPNFAPELF 397 (528)
T ss_pred cccCCceeeeeec--C--CceEecchHhhhhhhhhhhhhccCCCeEeccCCCceeecceeecC-ceeeecCCCCCCHHHH
Confidence 9999999999887 5 368899999999999999999999999999888889999999986 4556677777779898
Q ss_pred EEEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHhc-CceEEEecCE
Q psy1760 515 INFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPR 593 (793)
Q Consensus 515 ~~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrre-g~e~~vs~P~ 593 (793)
+.+..++ |++ ..++.++|.++.+|-. .++-....... .+|+..|.||++|+.+||+.| |+|+.+.+-.
T Consensus 398 rrvr~kd-~~K--------~Kql~Kgl~QL~eEGa-vQ~f~p~~~~d-~IlGAVG~LQFeV~~~RL~~EY~ve~~~e~~~ 466 (528)
T COG4108 398 RRVRLKD-PLK--------QKQLKKGLEQLAEEGA-VQVFKPLDGND-LILGAVGQLQFEVVQARLKNEYNVEAVFEPVN 466 (528)
T ss_pred HHHhcCC-hHH--------HHHHHHHHHHHhhcCe-eEEEecCCCCC-ceEEeeeeeehHHHHHHHHhhhCCeEEEeecc
Confidence 8888765 332 3579999999999864 66666656677 999999999999999999976 9998887544
Q ss_pred EE
Q psy1760 594 VI 595 (793)
Q Consensus 594 V~ 595 (793)
+.
T Consensus 467 ~~ 468 (528)
T COG4108 467 FS 468 (528)
T ss_pred ce
Confidence 33
No 51
>PRK04270 H/ACA RNA-protein complex component Cbf5p; Reviewed
Probab=100.00 E-value=1.2e-47 Score=410.86 Aligned_cols=172 Identities=38% Similarity=0.565 Sum_probs=164.8
Q ss_pred CcceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccC
Q psy1760 8 PVSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG 87 (793)
Q Consensus 8 ~~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~ 87 (793)
.++|||+||||.||||||||+++||+|+.|||||+|||||+||||||||+|+|||+++|+++.+|+|+|+++||.
T Consensus 20 ~~~g~l~i~Kp~g~tS~~~v~~~r~~~~~kkvGH~GTLDp~A~GvL~v~~g~atk~~~~~~~~~K~Y~~~~~~g~----- 94 (300)
T PRK04270 20 IKFGVVNLDKPPGPTSHEVAAWVRDILGVEKAGHGGTLDPKVTGVLPVALGKATKVVQALLESGKEYVCVMHLHG----- 94 (300)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhccccccCCCCCCCcCeEEEEEEEChHhhhhHHhccCCcEEEEEEEECC-----
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999993
Q ss_pred CCcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCCce
Q psy1760 88 DIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYL 167 (793)
Q Consensus 88 d~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~~~ 167 (793)
++|++++++++++|+|++.|+||+|||+| +++|++.||++++++|+.+.+
T Consensus 95 -------------~~~~~~~~~~l~~~~g~i~Q~pP~~SA~k-----------------~~~r~v~I~~i~~~~~~~~~~ 144 (300)
T PRK04270 95 -------------DVPEEDIRKVFKEFTGEIYQKPPLKSAVK-----------------RRLRVRTIYELEILEIDGRDV 144 (300)
T ss_pred -------------CCCHHHHHHHHHHCCCcEEeECCHHHhcc-----------------CCceEEEEEEEEEEEecCCEE
Confidence 37899999999999999999999999986 478999999999999998999
Q ss_pred eeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760 168 TLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA 214 (793)
Q Consensus 168 ~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa 214 (793)
.|++.||+|||||+|++|||..|++++|+..|||+++|+|+++..+.
T Consensus 145 ~~~v~cs~GtYIRsl~~dig~~Lg~~a~~~~L~R~~~g~f~~~~a~~ 191 (300)
T PRK04270 145 LFRVRCESGTYIRKLCHDIGLALGTGAHMQELRRTRTGPFTEEDLVT 191 (300)
T ss_pred EEEEEECCceEHHHHHHHHHHHHCCCeEEEEEEeEEECCCCcchhcC
Confidence 99999999999999999999999999999999999999998877664
No 52
>KOG0468|consensus
Probab=100.00 E-value=4.7e-44 Score=393.72 Aligned_cols=463 Identities=23% Similarity=0.326 Sum_probs=368.0
Q ss_pred ccceeeeecccCCcceehhhhhhccCccc-cccccccccccchhhccccceEEeeeeeEEeec-----CeEEEEecCCCc
Q psy1760 210 DKNIAIIAHVDHGKTTLIDHLLRQSGTFR-KNQNINARIMDSNEIEKERGITIFSKNCSIEYN-----GTRINIIDTPGH 283 (793)
Q Consensus 210 e~nIaIiG~~~~GKSTLv~~Ll~~~~~~~-~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~-----~~~i~iiDTPGh 283 (793)
-+|++++||-.||||+|++.|..+++.-- +.....-++.|....|++||.+|.+....+-.. .+-+||+|||||
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGH 207 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGH 207 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCc
Confidence 37999999999999999999999876321 112223478899999999999999988877653 468999999999
Q ss_pred ccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCC-----------ChhhhHhHHHHH
Q psy1760 284 ADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-----------RPEWVVDATFDL 352 (793)
Q Consensus 284 ~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a-----------~~~~v~~~i~~~ 352 (793)
.+|..|+.++++.+|++++|||+.+|++-+|...++.+.+.++|+.+||||+|+.-- +...+++++.++
T Consensus 208 VnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii~~iN~~ 287 (971)
T KOG0468|consen 208 VNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHIIDEINNL 287 (971)
T ss_pred ccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHHHHHHHHHhcch
Confidence 999999999999999999999999999999999999999999999999999998421 123445555544
Q ss_pred Hhhhccccccc----CccEEEeecCCCCcccc----------------------------------------cc------
Q psy1760 353 FDKLCATEEQL----DFPVIYTSALHGYANEN----------------------------------------SK------ 382 (793)
Q Consensus 353 ~~~l~~~~~~l----~~Pvi~~SA~~g~~~~~----------------------------------------~~------ 382 (793)
+......+..+ .--|++.|++.|++..- +.
T Consensus 288 is~~s~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrkF~kk~~~~~~~rs 367 (971)
T KOG0468|consen 288 ISTFSKDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFVKKPPDGSGSRS 367 (971)
T ss_pred hhhcccccccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccccccccccccCCCCCcccch
Confidence 44433322221 12267777777764210 00
Q ss_pred --------------------------------------cccCCc---------------hhhHHHHHhhcCcCcC-----
Q psy1760 383 --------------------------------------ARQGNM---------------IPLFEAILKYVPVHKD----- 404 (793)
Q Consensus 383 --------------------------------------~~~~gi---------------~~Ll~~I~~~lp~p~~----- 404 (793)
....+. .-+.+++.+++|+|..
T Consensus 368 FVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~lvc~~ffg~~sgfvd~~v~hi~sP~e~a~~K 447 (971)
T KOG0468|consen 368 FVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRLVCKSFFGIESGFVDMPVEHIPSPRENAARK 447 (971)
T ss_pred hhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHHHHHHHhccchhhhhHhhHhhcCChhhhhccc
Confidence 001112 2355677788888842
Q ss_pred --------------------CCCCCceEEEEEEeee-CCCceEEEEEEeecccccCCEEEEecCC-----CCCCCceeEe
Q psy1760 405 --------------------NSNNPLQLQIISLEYS-SYLGKIGIGRILSGRIKSLQDVVIMNGP-----DDKPNKAKIN 458 (793)
Q Consensus 405 --------------------~~~~p~~~~V~~~~~~-~~~G~v~~grV~sG~lk~G~~v~~~~~~-----~g~~~~~kV~ 458 (793)
++++|+.+.+++.+.. +..-..++|||+||+++.||.|.+...+ ++......|.
T Consensus 448 ~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~vlgeny~leDEeD~~~~~v~ 527 (971)
T KOG0468|consen 448 AEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLGENYSLEDEEDMVICEVG 527 (971)
T ss_pred cceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecceeecceeeEeeccccCCCcccceeeeee
Confidence 5678999999998754 4455679999999999999999998663 1112246789
Q ss_pred EEEEeecCceEEecccCCCcEEEEeccce-eecCCeEeCCCCC---CCCCCCc-cCCCceEEEEEecCCCCCCcCccccc
Q psy1760 459 QIRVFKGLDRVLVNEALSGDIVLITGIEE-ICIGSTICDPSKP---NGLPMLN-IDEPTLTINFMVNNSPLAGREGKFIT 533 (793)
Q Consensus 459 ~i~~~~G~~~~~v~~a~aGdIv~i~gl~~-i~iGdtl~~~~~~---~~l~~~~-~~~P~~~~~~~~~~~p~~g~e~~~~~ 533 (793)
++..+.+..+.+|+.|.||.+|.|.|++. +....||++.+.. -.++++. +.+|++.+++.|.+ ..|
T Consensus 528 el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t~~VvKiaveP~n----PsE----- 598 (971)
T KOG0468|consen 528 ELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVKVAVEPLN----PSE----- 598 (971)
T ss_pred eeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccchhcCCcceEEEEeccCC----hhh-----
Confidence 99999999999999999999999999986 4557888775544 3345554 45788888886543 343
Q ss_pred hHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHhc--CceEEEecCEEEEEEe------------
Q psy1760 534 TRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE--GYELSVSRPRVIFKTL------------ 599 (793)
Q Consensus 534 ~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrre--g~e~~vs~P~V~yre~------------ 599 (793)
.+|+.++|.|.....|.+-. .-+++|+ +.+.|-|||.|++++..||.- .+|+.|+.|-|.|-|+
T Consensus 599 LPKmldgLrKinKsYPl~~t-kVEESGE-HvilGtGElYmDcvlyDLR~~yseieikvaDPvv~F~Et~vetssikcfae 676 (971)
T KOG0468|consen 599 LPKMLDGLRKINKSYPLVIT-KVEESGE-HVILGTGELYMDCVLYDLRKSYSEIEIKVADPVVRFCETVVETSSIKCFAE 676 (971)
T ss_pred hhHHHHHHHhhcccCCcEEE-ehhhcCc-eEEecCchhhHHHHHHHHHHHHhhhceeecCceeEEEEeeecccchhhhcc
Confidence 47899999999999996544 4456788 999999999999999999963 8999999999999985
Q ss_pred ------------------------c--------------------------------------C----------------
Q psy1760 600 ------------------------N--------------------------------------G---------------- 601 (793)
Q Consensus 600 ------------------------~--------------------------------------g---------------- 601 (793)
+ |
T Consensus 677 tpnkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgpd~~GpNiL~dDTLp~evdk~ 756 (971)
T KOG0468|consen 677 TPNKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNILLDDTLPTEVDKN 756 (971)
T ss_pred CCCccCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccCCCCCCCceeecCcCcchhhHH
Confidence 0 0
Q ss_pred --------------------------------------------------------------------eeeCeEEEEEEE
Q psy1760 602 --------------------------------------------------------------------ELYEPYENLFVD 613 (793)
Q Consensus 602 --------------------------------------------------------------------~llEP~~~~~i~ 613 (793)
.++||||.|+|.
T Consensus 757 ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~YsafL~AtPrLmEP~Y~VEi~ 836 (971)
T KOG0468|consen 757 LLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPVYLVEIT 836 (971)
T ss_pred HHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHHHHHHHhhchhhcCceEEEEEe
Confidence 789999999999
Q ss_pred eCCcchHHHHHHhhccCceeeeeeec-cCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEecc
Q psy1760 614 IEEINQGIIMQKLNYRGGDLKNIEIN-EKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 614 vp~e~~G~v~~~l~~rrG~~~~~~~~-~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
+|.+....|.+.|++|||++..-.+. +.....+.+.+|+-+.+||-++||..|+|+|...+.|+||+++|
T Consensus 837 apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~C~~vF~HW~~VP 907 (971)
T KOG0468|consen 837 APADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAFCLSVFDHWRIVP 907 (971)
T ss_pred cccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccccCcccceeeeccchhHHHHhhhhcccCC
Confidence 99999999999999999999987765 44567899999999999999999999999999999999999999
No 53
>KOG0467|consensus
Probab=100.00 E-value=2.8e-42 Score=386.79 Aligned_cols=461 Identities=26% Similarity=0.383 Sum_probs=366.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
+|+++++|+|||||||.+.|+...|.+...-.-.-++||+.+.|+.||||..++..+...+++.+|+||+|||.||.+++
T Consensus 10 rn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sev 89 (887)
T KOG0467|consen 10 RNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEV 89 (887)
T ss_pred eEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhh
Confidence 79999999999999999999999888877666667999999999999999999999988899999999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCC----CChhh-------hHhHHHHHHhhh---
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN----ARPEW-------VVDATFDLFDKL--- 356 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~----a~~~~-------v~~~i~~~~~~l--- 356 (793)
.++.+.+|+++++||+.+|+.+||..+++++-..++.+|+|+||||+.- ..+.+ +++++......+
T Consensus 90 ssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~vn~~i~~~~~~ 169 (887)
T KOG0467|consen 90 SSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQVNGVIGQFLGG 169 (887)
T ss_pred hhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHHhhhHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999642 22222 333333332211
Q ss_pred ----ccc-----cc-----ccCccEEEeecCCCCccccc------------c--------------c-------------
Q psy1760 357 ----CAT-----EE-----QLDFPVIYTSALHGYANENS------------K--------------A------------- 383 (793)
Q Consensus 357 ----~~~-----~~-----~l~~Pvi~~SA~~g~~~~~~------------~--------------~------------- 383 (793)
..+ +. .-+--|+++||..||++.-. + +
T Consensus 170 ~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~lwgd~y~~~ktk~I~~~~~~~ 249 (887)
T KOG0467|consen 170 IVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKFLWGDRYIDPKTKRICEGKKLK 249 (887)
T ss_pred hhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhhhhccceeecchhhhhhcccCcc
Confidence 000 00 01234899999999974110 0 0
Q ss_pred ----------------------------------ccCCc-------hhhHHHH---------------HhhcCcCc----
Q psy1760 384 ----------------------------------RQGNM-------IPLFEAI---------------LKYVPVHK---- 403 (793)
Q Consensus 384 ----------------------------------~~~gi-------~~Ll~~I---------------~~~lp~p~---- 403 (793)
+..|+ ..+++.+ ..++|.|.
T Consensus 250 grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~~im~~wLPls~avll~a~~~lp~pl~~~~ 329 (887)
T KOG0467|consen 250 GRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLDAIMSTWLPLSDAVLLTVVYKLPDPIRSQA 329 (887)
T ss_pred cCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHHHHHHHHHHhhcccccchHHHHHHhcCCHHHHHH
Confidence 00000 1122222 23445441
Q ss_pred ------------------------CCCCCCceEEEEEEeeeCC----Cc-eEEEEEEeecccccCCEEEEecCCCCC---
Q psy1760 404 ------------------------DNSNNPLQLQIISLEYSSY----LG-KIGIGRILSGRIKSLQDVVIMNGPDDK--- 451 (793)
Q Consensus 404 ------------------------~~~~~p~~~~V~~~~~~~~----~G-~v~~grV~sG~lk~G~~v~~~~~~~g~--- 451 (793)
.+.++|..++|.+....+- .- -++++||+||+++.||.+++... ++.
T Consensus 330 ~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~~ari~sgTlr~g~~v~v~~p-d~~~~e 408 (887)
T KOG0467|consen 330 ERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLAFARIFSGTLRVGQVVYVLGP-DPLSPE 408 (887)
T ss_pred HhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhheeeeeeccCceeeccEeeecCC-CCCCcc
Confidence 1346788888888765432 12 47999999999999999999866 332
Q ss_pred -CCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCeEeCCCCCCCCCCCcc-CCCceEEEEEecCCCCCCcCc
Q psy1760 452 -PNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNI-DEPTLTINFMVNNSPLAGREG 529 (793)
Q Consensus 452 -~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~~~~~~l~~~~~-~~P~~~~~~~~~~~p~~g~e~ 529 (793)
....+|.++|.++|.+.++.+++.+|++++|.|-+-+...-|+|+.....++-...+ -+|.+.|++.+.+ | +
T Consensus 409 ~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g~~~vlks~TL~s~~~~~p~~~~~f~~tp~vrvaiep~~-p---~-- 482 (887)
T KOG0467|consen 409 HITECTVESLYLFMGQELVPLDEVPSGNVVAIGGAGIVLKSATLCSKVPCGPNLVVNFQITPIVRVAIEPDD-P---D-- 482 (887)
T ss_pred eeeeeeehhhHHhhcccceeeeccCCCcEEEecccceEeccceecccCCCcceeeeeeeeeeEEEEEeecCC-h---H--
Confidence 235789999999999999999999999999998444567889998743333222222 3788898887644 2 2
Q ss_pred cccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHh-cCceEEEecCEEEEEEec--------
Q psy1760 530 KFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRR-EGYELSVSRPRVIFKTLN-------- 600 (793)
Q Consensus 530 ~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrr-eg~e~~vs~P~V~yre~~-------- 600 (793)
..+++.+.|.-+...||++++..+ ..++ +.+.-.||+||+-++..|+. .++++++|+|.|+|+|+-
T Consensus 483 ---em~~L~~glkll~~adp~v~i~v~-~~gE-hvl~~aGevhlerc~kDL~efa~i~i~vSeP~vpfrET~~e~s~l~~ 557 (887)
T KOG0467|consen 483 ---EMDKLVEGLKLLNQADPFVKIRVE-ENGE-HVLVTAGEVHLERCLKDLKEFAKIEISVSEPLVPFRETIIEDSDLLA 557 (887)
T ss_pred ---HhHHHHHHHHhhcccchhhHHHHh-hccc-eeeeeccHHHHHHHHHHHhhhhceEEEecCCccchhhhccccchhhh
Confidence 236788888888889999999776 5788 99999999999999999998 499999999999999850
Q ss_pred --------------------------------------------------------------------------------
Q psy1760 601 -------------------------------------------------------------------------------- 600 (793)
Q Consensus 601 -------------------------------------------------------------------------------- 600 (793)
T Consensus 558 ~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k~~~~e~ls~~~s~~~~~~~ek~ 637 (887)
T KOG0467|consen 558 NLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQKGSFEENLSLLISLERLYEFEKP 637 (887)
T ss_pred hhhcCcccccccccceeEEeeecccccceeccccccchhccchhccccccccccccccccccccccHHHHHHHHhhcccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy1760 601 -------------------------------------------------------------------------------- 600 (793)
Q Consensus 601 -------------------------------------------------------------------------------- 600 (793)
T Consensus 638 ~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~l~~~ivsgfql~~~sGPlc~Ep~~g~~~~~es~~~e 717 (887)
T KOG0467|consen 638 REKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVARLSESIVSGFQLATSSGPLCNEPMQGICFVLESGSAE 717 (887)
T ss_pred HHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHHHHHHHhhhHhhhhccCcccccCcccEEEEeeccCcc
Confidence
Q ss_pred ---------C-------------------eeeCeEEEEEEEeCCcchHHHHHHhhccCceeeeeeec-cCCeEEEEEEec
Q psy1760 601 ---------G-------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEIN-EKERVRLEYRIP 651 (793)
Q Consensus 601 ---------g-------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~-~~~~~~i~~~iP 651 (793)
| .+..|+|.+.|.+-.|+.|+|+..|++|+|++++-+.. +.+...+++.+|
T Consensus 718 ~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~gkVLsEem~EgT~~F~V~aliP 797 (887)
T KOG0467|consen 718 EMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRHGKVLSEEMKEGTGFFIVTALIP 797 (887)
T ss_pred cccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhhcchhhhhhhhCCCCcEEEEEEee
Confidence 0 67899999999999999999999999999999988764 667999999999
Q ss_pred hhhhcchHHHHcccccceEEEEeEecceEecc
Q psy1760 652 SRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 652 ~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
+.|.+||..|+|--|+|.|+-.+.|+||+-..
T Consensus 798 VvESFgFadeiRK~TSG~A~pQLvFShwEvId 829 (887)
T KOG0467|consen 798 VVESFGFADEIRKGTSGAASPQLVFSHWEVID 829 (887)
T ss_pred eeccccHHHHHhhccccccchhhhccccEEec
Confidence 99999999999999999999999999999876
No 54
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.4e-41 Score=358.40 Aligned_cols=281 Identities=31% Similarity=0.378 Sum_probs=251.7
Q ss_pred cceeeeecccCCcceehhhhhhccCcccccc---------------ccccccccchhhccccceEEeeeeeEEeecCeEE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERGITIFSKNCSIEYNGTRI 275 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~---------------~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i 275 (793)
.|++++||+|||||||+.+|+++.|.+.... ..-+|+||....||+||+|++.....|+.+.+.+
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~ 87 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNF 87 (428)
T ss_pred eEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCceE
Confidence 4899999999999999999999999876521 1236999999999999999999999999999999
Q ss_pred EEecCCCcccchHHHHHHhhccCcEEEEEeCCCC-------CCchhHHHHHHHHHcCCcc-EEEEecccCCCC---Chhh
Q psy1760 276 NIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-------PMPQTRFVTRKALKLGFKP-IVVVNKIDRSNA---RPEW 344 (793)
Q Consensus 276 ~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g-------~~~qt~~~l~~~~~~~ip~-IvvINKiD~~~a---~~~~ 344 (793)
+|+|+|||+||..++..++++||.+||||||..+ +..||++|+-+++.+|+.. ||++||||..++ ++++
T Consensus 88 tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf~e 167 (428)
T COG5256 88 TIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEE 167 (428)
T ss_pred EEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHHHH
Confidence 9999999999999999999999999999999988 8999999999999999976 789999999876 4788
Q ss_pred hHhHHHHHHhhhcccccccCccEEEeecCCCCcccccc--cccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCC
Q psy1760 345 VVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSK--ARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSY 422 (793)
Q Consensus 345 v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~--~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~ 422 (793)
+.+++..+++.++.... +++++++||.+|.|+.+.+ -+|+....|+++| +.+..|....+.||++.|.+++....
T Consensus 168 i~~~v~~l~k~~G~~~~--~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaL-d~~~~p~~~~d~Plr~pI~~v~~i~~ 244 (428)
T COG5256 168 IVSEVSKLLKMVGYNPK--DVPFIPISGFKGDNLTKKSENMPWYKGPTLLEAL-DQLEPPERPLDKPLRLPIQDVYSISG 244 (428)
T ss_pred HHHHHHHHHHHcCCCcc--CCeEEecccccCCcccccCcCCcCccCChHHHHH-hccCCCCCCCCCCeEeEeeeEEEecC
Confidence 88888887778887754 6889999999999987655 3799999999999 58888888899999999999999899
Q ss_pred CceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEE--ecc--ceeecCCeEeCCC
Q psy1760 423 LGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI--EEICIGSTICDPS 498 (793)
Q Consensus 423 ~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i--~gl--~~i~iGdtl~~~~ 498 (793)
.|++.+|||.+|.|++||.|++.|. + ....|++|... ..+++.|.|||.|.+ +|+ +|++.||++++.+
T Consensus 245 ~gtv~vGrVEsG~i~~g~~v~~~p~--~--~~~evksie~~----~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~ 316 (428)
T COG5256 245 IGTVPVGRVESGVIKPGQKVTFMPA--G--VVGEVKSIEMH----HEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSD 316 (428)
T ss_pred CceEEEEEEeeeeeccCCEEEEecC--c--ceEEEeeeeec----ccccccCCCCCeEEEEecCCchhccCCccEeccCC
Confidence 9999999999999999999999988 3 46789999865 589999999999987 455 5799999999998
Q ss_pred CCCC
Q psy1760 499 KPNG 502 (793)
Q Consensus 499 ~~~~ 502 (793)
+|..
T Consensus 317 n~~t 320 (428)
T COG5256 317 NPPT 320 (428)
T ss_pred CCcc
Confidence 8754
No 55
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=2.6e-39 Score=366.17 Aligned_cols=277 Identities=27% Similarity=0.358 Sum_probs=240.2
Q ss_pred cceeeeecccCCcceehhhhhhccCcccccc--cc-------------ccccccchhhccccceEEeeeeeEEeecCeEE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQ--NI-------------NARIMDSNEIEKERGITIFSKNCSIEYNGTRI 275 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~--~v-------------~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i 275 (793)
.||+++||+|+|||||+++|++.++.+.+.+ .+ ..+++|..+.|++||+|++.....+.++++.+
T Consensus 8 ~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i 87 (447)
T PLN00043 8 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYC 87 (447)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEEE
Confidence 5899999999999999999999988765432 10 14789999999999999999999999999999
Q ss_pred EEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCC-------chhHHHHHHHHHcCCcc-EEEEecccCC-----CCCh
Q psy1760 276 NIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPM-------PQTRFVTRKALKLGFKP-IVVVNKIDRS-----NARP 342 (793)
Q Consensus 276 ~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~-------~qt~~~l~~~~~~~ip~-IvvINKiD~~-----~a~~ 342 (793)
+|+|||||.+|..++..+++.+|++|+||||.+|.. +||++++..+..+|+|. |||+||||+. .+++
T Consensus 88 ~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~ 167 (447)
T PLN00043 88 TVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARY 167 (447)
T ss_pred EEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHH
Confidence 999999999999999999999999999999998843 79999999999999976 7789999987 3457
Q ss_pred hhhHhHHHHHHhhhcccccccCccEEEeecCCCCccccccc--ccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeee
Q psy1760 343 EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYS 420 (793)
Q Consensus 343 ~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~ 420 (793)
+++.+++++++...+...+ .+|++++||++|.|+.+... .|+....|+++| +.++.|.+..+.||+|+|.+++..
T Consensus 168 ~~i~~ei~~~l~~~g~~~~--~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l-~~i~~p~~~~~~plr~~I~~v~~~ 244 (447)
T PLN00043 168 DEIVKEVSSYLKKVGYNPD--KIPFVPISGFEGDNMIERSTNLDWYKGPTLLEAL-DQINEPKRPSDKPLRLPLQDVYKI 244 (447)
T ss_pred HHHHHHHHHHHHHcCCCcc--cceEEEEeccccccccccccCCcccchHHHHHHH-hhcCCCccccCCCcEEEEEEEEEe
Confidence 7888999999888776533 46899999999998765432 455567899998 557778778899999999999999
Q ss_pred CCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--cc--ceeecCCeEeC
Q psy1760 421 SYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GI--EEICIGSTICD 496 (793)
Q Consensus 421 ~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--gl--~~i~iGdtl~~ 496 (793)
++.|+++.|||.+|+|++||.|.+.|. + ...+|++|+.+. .++++|.|||.|++. ++ +++..|++||+
T Consensus 245 ~g~G~vv~G~V~~G~l~~Gd~v~~~P~--~--~~~~VksI~~~~----~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~ 316 (447)
T PLN00043 245 GGIGTVPVGRVETGVIKPGMVVTFGPT--G--LTTEVKSVEMHH----ESLQEALPGDNVGFNVKNVAVKDLKRGYVASN 316 (447)
T ss_pred CCcEEEEEEEEECCEEeeCCEEEEcCC--C--CEEEEEEEEECC----eEeCEecCCCeEEEEECCCCHhhCCCccEEcc
Confidence 999999999999999999999999987 3 468999998664 899999999999884 65 56899999998
Q ss_pred CC
Q psy1760 497 PS 498 (793)
Q Consensus 497 ~~ 498 (793)
..
T Consensus 317 ~~ 318 (447)
T PLN00043 317 SK 318 (447)
T ss_pred CC
Confidence 64
No 56
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=8.3e-39 Score=360.13 Aligned_cols=281 Identities=28% Similarity=0.402 Sum_probs=237.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.||+++||+|||||||+++|++..+............+|....|++||+|+++....+.+++..++|+|||||.+|..++
T Consensus 13 ~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~ 92 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNM 92 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHHHH
Confidence 68999999999999999999988766543333334578999999999999999999999999999999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCc-cEEEEecccCCCCC--hhhhHhHHHHHHhhhcccccccCccE
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip-~IvvINKiD~~~a~--~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
.+++..+|++++|+||.+|+++||++++..+...++| +|+|+||+|+.+.. ++...+++.++|..++...+ .+|+
T Consensus 93 ~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~i 170 (409)
T CHL00071 93 ITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGD--DIPI 170 (409)
T ss_pred HHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCC--cceE
Confidence 9999999999999999999999999999999999999 56899999997532 33445677777776665432 4799
Q ss_pred EEeecCCCCccccccc-------ccC-CchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccC
Q psy1760 368 IYTSALHGYANENSKA-------RQG-NMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSL 439 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~-------~~~-gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G 439 (793)
+++||++|++...... +|. ++..|+++|.+.+|+|..+.+.||+|+|++++++++.|++++|||++|+|++|
T Consensus 171 i~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~G 250 (409)
T CHL00071 171 VSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATGRIERGTVKVG 250 (409)
T ss_pred EEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEecCEEeeC
Confidence 9999999987643221 232 47899999998888888888999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--ccc--eeecCCeEeCCCC
Q psy1760 440 QDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GIE--EICIGSTICDPSK 499 (793)
Q Consensus 440 ~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--gl~--~i~iGdtl~~~~~ 499 (793)
|.|.+.+.++ ....+|++|+.+. .++++|.|||+|+|+ |++ ++.+||+|++++.
T Consensus 251 d~v~i~p~~~--~~~~~VksI~~~~----~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~~ 308 (409)
T CHL00071 251 DTVEIVGLRE--TKTTTVTGLEMFQ----KTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPGT 308 (409)
T ss_pred CEEEEeeCCC--CcEEEEEEEEEcC----cCCCEECCCceeEEEEcCCCHHHcCCeEEEecCCC
Confidence 9999876411 2458999999765 588999999999764 664 7899999998763
No 57
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=1.1e-38 Score=361.38 Aligned_cols=278 Identities=27% Similarity=0.347 Sum_probs=240.1
Q ss_pred cceeeeecccCCcceehhhhhhccCcccccc---------cc------ccccccchhhccccceEEeeeeeEEeecCeEE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------NI------NARIMDSNEIEKERGITIFSKNCSIEYNGTRI 275 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~---------~v------~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i 275 (793)
.||+++||+|+|||||+++|+..++.+...+ .. ..+++|..+.|++||+|++.....++|+++.+
T Consensus 8 ~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i 87 (446)
T PTZ00141 8 INLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYF 87 (446)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeEE
Confidence 5899999999999999999999888766432 00 13679999999999999999999999999999
Q ss_pred EEecCCCcccchHHHHHHhhccCcEEEEEeCCCCC-------CchhHHHHHHHHHcCCcc-EEEEecccCCC-----CCh
Q psy1760 276 NIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-------MPQTRFVTRKALKLGFKP-IVVVNKIDRSN-----ARP 342 (793)
Q Consensus 276 ~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~-------~~qt~~~l~~~~~~~ip~-IvvINKiD~~~-----a~~ 342 (793)
+|+|||||.+|..++.++++.+|++||||||.+|+ .+||+++|..+..+|+|. |||+||||+.. +++
T Consensus 88 ~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~~~ 167 (446)
T PTZ00141 88 TIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERY 167 (446)
T ss_pred EEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhHHHH
Confidence 99999999999999999999999999999999997 489999999999999986 68999999543 457
Q ss_pred hhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccc--cccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeee
Q psy1760 343 EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSK--ARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYS 420 (793)
Q Consensus 343 ~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~--~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~ 420 (793)
+++.+++.+.|..++...+ ++|++++||.+|.|+.+.+ .+|+....|+++| +.+++|..+.+.||+++|.+++..
T Consensus 168 ~~i~~~i~~~l~~~g~~~~--~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l-~~~~~~~~~~~~p~r~~I~~v~~v 244 (446)
T PTZ00141 168 DEIKKEVSAYLKKVGYNPE--KVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEAL-DTLEPPKRPVDKPLRLPLQDVYKI 244 (446)
T ss_pred HHHHHHHHHHHHhcCCCcc--cceEEEeecccCCCcccCCCCCcccchHHHHHHH-hCCCCCCcCCCCCeEEEEEEEEec
Confidence 8888999988887776432 5899999999999876543 2455567899998 556677777789999999999999
Q ss_pred CCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--cc--ceeecCCeEeC
Q psy1760 421 SYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GI--EEICIGSTICD 496 (793)
Q Consensus 421 ~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--gl--~~i~iGdtl~~ 496 (793)
++.|+++.|+|.+|+|++||.|.+.|. + ...+|++|+.+. .++++|.|||.|++. ++ .++.+||+||+
T Consensus 245 ~g~Gtvv~G~V~~G~l~~Gd~v~i~P~--~--~~~~VksI~~~~----~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~ 316 (446)
T PTZ00141 245 GGIGTVPVGRVETGILKPGMVVTFAPS--G--VTTEVKSVEMHH----EQLAEAVPGDNVGFNVKNVSVKDIKRGYVASD 316 (446)
T ss_pred CCceEEEEEEEEcceEecCCEEEEccC--C--cEEEEEEEEecC----cccCEECCCCEEEEEECCCCHHHcCCceEEec
Confidence 999999999999999999999999987 3 468999998765 789999999999984 54 46889999998
Q ss_pred CCC
Q psy1760 497 PSK 499 (793)
Q Consensus 497 ~~~ 499 (793)
++.
T Consensus 317 ~~~ 319 (446)
T PTZ00141 317 SKN 319 (446)
T ss_pred CCC
Confidence 643
No 58
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.6e-38 Score=356.05 Aligned_cols=279 Identities=28% Similarity=0.437 Sum_probs=231.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.||+++||+|||||||+++|++.............+.+|..+.|++||+|++.....+.+++..++|||||||.+|..++
T Consensus 13 ~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~ 92 (394)
T PRK12736 13 VNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVKNM 92 (394)
T ss_pred eEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHHHH
Confidence 68999999999999999999865332111111123468999999999999999988888889999999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCcc-EEEEecccCCCC-C-hhhhHhHHHHHHhhhcccccccCccE
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNA-R-PEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~-IvvINKiD~~~a-~-~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
.++++.+|++++|+|+.+|+++||++++..+...++|. |+|+||+|+.+. + ++.+.+++.+++...+.... .+|+
T Consensus 93 ~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~--~~~i 170 (394)
T PRK12736 93 ITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGD--DIPV 170 (394)
T ss_pred HHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcC--CccE
Confidence 99999999999999999999999999999999999995 688999999742 1 23344577777766665422 4799
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecC
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNG 447 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~ 447 (793)
+++||++|.+... .+..++..|+++|.+++|+|..+.++||+|+|++++++++.|+++.|||.+|+|++||.|++++.
T Consensus 171 i~vSa~~g~~~~~--~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~ 248 (394)
T PRK12736 171 IRGSALKALEGDP--KWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVEIVGI 248 (394)
T ss_pred EEeeccccccCCC--cchhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEEEEecC
Confidence 9999999853221 11236899999999999988888889999999999999999999999999999999999999876
Q ss_pred CCCCCCceeEeEEEEeecCceEEecccCCCcEEEE--ecc--ceeecCCeEeCCCC
Q psy1760 448 PDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI--EEICIGSTICDPSK 499 (793)
Q Consensus 448 ~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i--~gl--~~i~iGdtl~~~~~ 499 (793)
+.....+|++|+.+. .++++|.|||+|++ +|+ +++.+||+||+++.
T Consensus 249 --~~~~~~~V~sI~~~~----~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~~ 298 (394)
T PRK12736 249 --KETQKTVVTGVEMFR----KLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPGS 298 (394)
T ss_pred --CCCeEEEEEEEEECC----EEccEECCCCEEEEEECCCcHHhCCcceEEecCCC
Confidence 223468999999753 78999999999976 676 46899999998763
No 59
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=5.2e-38 Score=352.26 Aligned_cols=281 Identities=28% Similarity=0.402 Sum_probs=233.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.||+++||+|||||||+++|++.............+.+|..+.|+++|+|++.....+.+++..++|+|||||.+|..++
T Consensus 13 ~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~ 92 (396)
T PRK12735 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVKNM 92 (396)
T ss_pred EEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHHHH
Confidence 58999999999999999999975432211111123478999999999999999999998899999999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccE-EEEecccCCCC--ChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI-VVVNKIDRSNA--RPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~I-vvINKiD~~~a--~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
.+++..+|++++|+|+.+|+.+||++++..+...++|.| +|+||+|+.+. .++.+.+++.+++..++... ..+|+
T Consensus 93 ~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~--~~~~i 170 (396)
T PRK12735 93 ITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG--DDTPI 170 (396)
T ss_pred HhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCc--CceeE
Confidence 999999999999999999999999999999999999976 57999999742 13344456667766655432 24789
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecC
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNG 447 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~ 447 (793)
+++||++|++......+..++..|+++|.+.+|+|..+.++||+|+|+++++.++.|.++.|+|.+|+|++||.|.++|.
T Consensus 171 i~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~ 250 (396)
T PRK12735 171 IRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGI 250 (396)
T ss_pred EecchhccccCCCCCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCEEEEecC
Confidence 99999999875433222247899999999999988888899999999999999999999999999999999999999976
Q ss_pred CCCCCCceeEeEEEEeecCceEEecccCCCcEEEE--ecc--ceeecCCeEeCCCC
Q psy1760 448 PDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI--EEICIGSTICDPSK 499 (793)
Q Consensus 448 ~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i--~gl--~~i~iGdtl~~~~~ 499 (793)
+.....+|++|+.+. +++++|.|||+|++ +|+ +++..|++||+++.
T Consensus 251 --~~~~~~~VksI~~~~----~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~~ 300 (396)
T PRK12735 251 --KETQKTTVTGVEMFR----KLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGS 300 (396)
T ss_pred --CCCeEEEEEEEEECC----eEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCCC
Confidence 223468899998754 79999999999998 576 46899999999763
No 60
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=8e-38 Score=350.54 Aligned_cols=283 Identities=29% Similarity=0.401 Sum_probs=234.6
Q ss_pred cccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH
Q psy1760 209 LDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 288 (793)
Q Consensus 209 le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 288 (793)
...||+++||+|||||||+++|++...............+|..+.|++||+|++.....+.+++..++|+|||||.+|..
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~ 90 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVK 90 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHH
Confidence 34699999999999999999999753222111112234789999999999999999988888999999999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccE-EEEecccCCCC--ChhhhHhHHHHHHhhhcccccccCc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI-VVVNKIDRSNA--RPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~I-vvINKiD~~~a--~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
++.+++..+|++++|+|+.+|+++||++++..+...++|.+ +++||+|+.+. .++.+.+++.++|..++... ...
T Consensus 91 ~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~ 168 (396)
T PRK00049 91 NMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG--DDT 168 (396)
T ss_pred HHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCc--cCC
Confidence 99999999999999999999999999999999999999986 68999999742 13345557777777666532 257
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEe
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 445 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~ 445 (793)
|++++||++|++......+..++..|+++|.+.+|+|....++||+|+|.++++.++.|.++.|+|.+|+|++||.|.++
T Consensus 169 ~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~ 248 (396)
T PRK00049 169 PIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIV 248 (396)
T ss_pred cEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCEEEEe
Confidence 99999999987532222222378899999988899888888999999999999999999999999999999999999998
Q ss_pred cCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEE--ecc--ceeecCCeEeCCCC
Q psy1760 446 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI--EEICIGSTICDPSK 499 (793)
Q Consensus 446 ~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i--~gl--~~i~iGdtl~~~~~ 499 (793)
+. .. ....+|++|+.+. .++++|.|||+|++ .|+ +++..|++||+++.
T Consensus 249 p~-~~-~~~~~VksI~~~~----~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~~ 300 (396)
T PRK00049 249 GI-RD-TQKTTVTGVEMFR----KLLDEGQAGDNVGALLRGIKREDVERGQVLAKPGS 300 (396)
T ss_pred ec-CC-CceEEEEEEEECC----cEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCCC
Confidence 75 21 3468999999764 78999999999998 566 46899999999753
No 61
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=5.9e-38 Score=351.98 Aligned_cols=279 Identities=28% Similarity=0.400 Sum_probs=229.7
Q ss_pred ccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH
Q psy1760 210 DKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 289 (793)
Q Consensus 210 e~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 289 (793)
..||+++||+|||||||+++|++......+......+.+|..+.|++||+|++.....+.+++..++|||||||.+|..+
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~ 91 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKN 91 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHHHH
Confidence 36899999999999999999985532211111112357899999999999999999888888999999999999999999
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccE-EEEecccCCCCC--hhhhHhHHHHHHhhhcccccccCcc
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI-VVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~I-vvINKiD~~~a~--~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
+.++++.+|++++|+|+.+|+.+||++++..+...++|.+ +|+||+|+.+.. ++.+.+++++++..++... ..+|
T Consensus 92 ~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~ 169 (394)
T TIGR00485 92 MITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPG--DDTP 169 (394)
T ss_pred HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCc--cCcc
Confidence 9999999999999999999999999999999999999986 689999997532 2334456777776655432 2479
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEec
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMN 446 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~ 446 (793)
++++||++|.+..+ .+..++..|+++|.+.+|+|..+.++||+|+|++++++++.|+++.|+|.+|+|++||.|.+.+
T Consensus 170 ii~vSa~~g~~g~~--~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p 247 (394)
T TIGR00485 170 IIRGSALKALEGDA--EWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEIVG 247 (394)
T ss_pred EEECccccccccCC--chhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEEEec
Confidence 99999999864322 1223578899999888888888888999999999999999999999999999999999999987
Q ss_pred CCCCCCCceeEeEEEEeecCceEEecccCCCcEEEE--ecc--ceeecCCeEeCCC
Q psy1760 447 GPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI--EEICIGSTICDPS 498 (793)
Q Consensus 447 ~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i--~gl--~~i~iGdtl~~~~ 498 (793)
. ++....+|++|+.+. .++++|.|||+|++ +|+ +++.+||+||+++
T Consensus 248 ~--~~~~~~~VksI~~~~----~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~ 297 (394)
T TIGR00485 248 L--KDTRKTTVTGVEMFR----KELDEGRAGDNVGLLLRGIKREEIERGMVLAKPG 297 (394)
T ss_pred C--CCCcEEEEEEEEECC----eEEEEECCCCEEEEEeCCccHHHCCccEEEecCC
Confidence 4 122468899999753 78999999999987 576 4689999999874
No 62
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=8.4e-38 Score=355.20 Aligned_cols=281 Identities=27% Similarity=0.391 Sum_probs=236.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.||+++||+|+|||||+++|++..+.+.....-....+|....|+++|+|++.....+.+++..++|||||||.+|..++
T Consensus 82 ~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 161 (478)
T PLN03126 82 VNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNM 161 (478)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHHHH
Confidence 68999999999999999999987776543332234578999999999999999999999999999999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCc-cEEEEecccCCCC--ChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNA--RPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip-~IvvINKiD~~~a--~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
.++++.+|++++||||.+|+++||++++..+..+++| .|+++||+|+.+. .++.+.+++.+++..++... .++|+
T Consensus 162 ~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~--~~~~~ 239 (478)
T PLN03126 162 ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPG--DDIPI 239 (478)
T ss_pred HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCc--CcceE
Confidence 9999999999999999999999999999999999999 5689999999753 13445557777777766543 25899
Q ss_pred EEeecCCCCccccc-------ccccC-CchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccC
Q psy1760 368 IYTSALHGYANENS-------KARQG-NMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSL 439 (793)
Q Consensus 368 i~~SA~~g~~~~~~-------~~~~~-gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G 439 (793)
+++||.+|++.... ...|. ++..|+++|.+..|.|.++.+.||+|+|+++++.++.|.|+.|+|.+|+|++|
T Consensus 240 vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~G 319 (478)
T PLN03126 240 ISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVG 319 (478)
T ss_pred EEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeCCceEEEEEEEEcCeEecC
Confidence 99999999754210 01232 36789999988777777778899999999999999999999999999999999
Q ss_pred CEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEE--eccc--eeecCCeEeCCCC
Q psy1760 440 QDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGIE--EICIGSTICDPSK 499 (793)
Q Consensus 440 ~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i--~gl~--~i~iGdtl~~~~~ 499 (793)
|.|.+.|. ++....+|++|+.+. .++++|.|||.|+| .|++ ++..|++||+++.
T Consensus 320 d~v~i~p~--~~~~~~~VksI~~~~----~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~~ 377 (478)
T PLN03126 320 ETVDIVGL--RETRSTTVTGVEMFQ----KILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGS 377 (478)
T ss_pred CEEEEecC--CCceEEEEEEEEECC----eECCEEeCCceeeeeccCCcHHHcCCccEEecCCC
Confidence 99999976 433468899999764 78999999999998 5664 5899999999764
No 63
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=3.4e-37 Score=349.49 Aligned_cols=279 Identities=30% Similarity=0.407 Sum_probs=237.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccc------------ccc---ccccccchhhccccceEEeeeeeEEeecCeEE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKN------------QNI---NARIMDSNEIEKERGITIFSKNCSIEYNGTRI 275 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~------------~~v---~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i 275 (793)
.||+++||+|+|||||+++|++..+.+... +.. ..+++|..+.|+++|+|++.....+.++++.+
T Consensus 7 ~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i 86 (425)
T PRK12317 7 LNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYF 86 (425)
T ss_pred EEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEE
Confidence 589999999999999999999988877543 111 25789999999999999999999999999999
Q ss_pred EEecCCCcccchHHHHHHhhccCcEEEEEeCCC--CCCchhHHHHHHHHHcCCc-cEEEEecccCCCCC---hhhhHhHH
Q psy1760 276 NIIDTPGHADFGGEVERILSMVDNVLLLIDAVE--GPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR---PEWVVDAT 349 (793)
Q Consensus 276 ~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~--g~~~qt~~~l~~~~~~~ip-~IvvINKiD~~~a~---~~~v~~~i 349 (793)
+|||||||.+|..++.++++.+|++|+|+|+.+ ++..|+++++..+...++| +++|+||+|+.+.+ +....+++
T Consensus 87 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~i 166 (425)
T PRK12317 87 TIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVKEEV 166 (425)
T ss_pred EEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999 9999999999999988875 68899999997532 34456677
Q ss_pred HHHHhhhcccccccCccEEEeecCCCCcccccc--cccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEE
Q psy1760 350 FDLFDKLCATEEQLDFPVIYTSALHGYANENSK--ARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIG 427 (793)
Q Consensus 350 ~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~--~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~ 427 (793)
.+++..++.... .+|++++||++|.++.++. .+|+....|+++| +.+|+|..+.+.||+|+|.+++..++.|+++
T Consensus 167 ~~~l~~~g~~~~--~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l-~~~~~~~~~~~~p~r~~i~~~~~~~g~G~vv 243 (425)
T PRK12317 167 SKLLKMVGYKPD--DIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEAL-DNLKPPEKPTDKPLRIPIQDVYSISGVGTVP 243 (425)
T ss_pred HHHHHhhCCCcC--cceEEEeecccCCCccccccCCCcccHHHHHHHH-hcCCCCccccCCCcEEEEEEEEeeCCCeEEE
Confidence 777665554321 3689999999999877654 2566667899997 6688887778899999999999999999999
Q ss_pred EEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--cc--ceeecCCeEeCCCCC
Q psy1760 428 IGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GI--EEICIGSTICDPSKP 500 (793)
Q Consensus 428 ~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--gl--~~i~iGdtl~~~~~~ 500 (793)
.|+|.+|+|++||.|.+.|. + ...+|++|+.+. .++++|.|||.|++. ++ +++.+||+|++++++
T Consensus 244 ~G~v~~G~v~~Gd~v~i~P~--~--~~~~VksI~~~~----~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~~~ 312 (425)
T PRK12317 244 VGRVETGVLKVGDKVVFMPA--G--VVGEVKSIEMHH----EELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPDNP 312 (425)
T ss_pred EEEEeeccEecCCEEEECCC--C--CeEEEEEEEECC----cccCEECCCCeEEEEECCCCHHHccCccEecCCCCC
Confidence 99999999999999999987 3 368999999764 789999999999874 55 368999999987653
No 64
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=7e-37 Score=344.01 Aligned_cols=276 Identities=25% Similarity=0.310 Sum_probs=226.2
Q ss_pred ceeeeecccCCcceehhhhhhccCcccccc------------c-----cccccccchhhccccceEEeeeeeEEeecCeE
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQ------------N-----INARIMDSNEIEKERGITIFSKNCSIEYNGTR 274 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~------------~-----v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~ 274 (793)
+|+++||+|||||||+++|++.++.+.... . ..++++|..+.|++||+|++.....+.|++.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 689999999999999999999988876521 1 12578999999999999999999999999999
Q ss_pred EEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCc-cEEEEecccCCCCCh---hhhHhHHH
Q psy1760 275 INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNARP---EWVVDATF 350 (793)
Q Consensus 275 i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip-~IvvINKiD~~~a~~---~~v~~~i~ 350 (793)
++|||||||.+|..++..++..+|++|+||||.+|+++||++++..+...++| +|+|+||+|+.+++. +++.+++.
T Consensus 82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~ 161 (406)
T TIGR02034 82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYL 161 (406)
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887 477999999976542 22233333
Q ss_pred HHHhhhcccccccCccEEEeecCCCCcccccc--cccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEE
Q psy1760 351 DLFDKLCATEEQLDFPVIYTSALHGYANENSK--ARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGI 428 (793)
Q Consensus 351 ~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~--~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~ 428 (793)
+++..++. .++|++++||++|.+..+.. ..|+....|+++| +.++.|....+.||++.|.+++...+.++-..
T Consensus 162 ~~~~~~~~----~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L-~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~ 236 (406)
T TIGR02034 162 AFAEQLGF----RDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEIL-ETVEVERDAQDLPLRFPVQYVNRPNLDFRGYA 236 (406)
T ss_pred HHHHHcCC----CCccEEEeecccCCCCcccccCCCccchhHHHHHH-HhcCCCCCcCCCCcccceEEEeecCCCcEEEE
Confidence 33333332 24689999999999877643 2466667788887 55777777778999999998875444333367
Q ss_pred EEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--ccceeecCCeEeCCCCC
Q psy1760 429 GRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GIEEICIGSTICDPSKP 500 (793)
Q Consensus 429 grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--gl~~i~iGdtl~~~~~~ 500 (793)
|+|.+|+|++||.|.+.|. + ...+|++|+.+. .++++|.|||+|++. +.+++..||+||+++++
T Consensus 237 G~v~~G~l~~gd~v~i~P~--~--~~~~VksI~~~~----~~~~~a~~G~~v~l~l~~~~~i~rG~vl~~~~~~ 302 (406)
T TIGR02034 237 GTIASGSVHVGDEVVVLPS--G--RSSRVARIVTFD----GDLEQARAGQAVTLTLDDEIDISRGDLLAAADSA 302 (406)
T ss_pred EEEecceeecCCEEEEeCC--C--cEEEEEEEEECC----cccCEeCCCCEEEEEECCccccCCccEEEcCCCC
Confidence 9999999999999999987 3 468999999765 579999999999986 34568999999998653
No 65
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=5.9e-37 Score=346.68 Aligned_cols=281 Identities=28% Similarity=0.418 Sum_probs=227.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.||+++||+|||||||+++|.+...............+|..+.|++||+|++.....+++++..++|+|||||.+|..++
T Consensus 62 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~ 141 (447)
T PLN03127 62 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 141 (447)
T ss_pred EEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchHHHH
Confidence 58999999999999999999743211111111112368999999999999999999999999999999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCcc-EEEEecccCCCCC--hhhhHhHHHHHHhhhcccccccCccE
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~-IvvINKiD~~~a~--~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
.+++..+|+++||||+.+|+++||++++..+...++|. |+++||+|+.+.. .+.+.+++.+++..++... ..+|+
T Consensus 142 ~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~--~~vpi 219 (447)
T PLN03127 142 ITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPG--DEIPI 219 (447)
T ss_pred HHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCC--CcceE
Confidence 99999999999999999999999999999999999996 6889999997421 2223345556655544432 25789
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecC
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNG 447 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~ 447 (793)
+++||+++....+....+.++..|+++|.+.+|.|.++.++||+|+|.+++..++.|.++.|+|.+|+|++||.|++.+.
T Consensus 220 ip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~ 299 (447)
T PLN03127 220 IRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGL 299 (447)
T ss_pred EEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEEEccc
Confidence 99998755322222122345789999999999988888889999999999999999999999999999999999999865
Q ss_pred C-CCCCCceeEeEEEEeecCceEEecccCCCcEEEE--ecc--ceeecCCeEeCCC
Q psy1760 448 P-DDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI--EEICIGSTICDPS 498 (793)
Q Consensus 448 ~-~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i--~gl--~~i~iGdtl~~~~ 498 (793)
. +| ....+|++|+.+. .++++|.|||.|++ +|+ +++..||+||+++
T Consensus 300 ~~~g-~~~~~VksI~~~~----~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~~ 350 (447)
T PLN03127 300 RPGG-PLKTTVTGVEMFK----KILDQGQAGDNVGLLLRGLKREDVQRGQVICKPG 350 (447)
T ss_pred CCCC-cEEEEEEEEEEEC----cEeCEEcCCCEEEEEeCCCCHHHCCCccEEecCC
Confidence 1 12 3468999999775 68999999999997 566 4689999999874
No 66
>KOG0460|consensus
Probab=100.00 E-value=7.6e-38 Score=324.00 Aligned_cols=284 Identities=28% Similarity=0.382 Sum_probs=241.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
-||+-+||++||||||..++.+-.............-.|..+.|+.|||||...+..++...+.+--+|+|||+||.++|
T Consensus 55 vNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIKNM 134 (449)
T KOG0460|consen 55 VNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIKNM 134 (449)
T ss_pred ccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHHHh
Confidence 48999999999999999998654211111111223345899999999999999999998889999999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCcc-EEEEecccCCC-CC-hhhhHhHHHHHHhhhcccccccCccE
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSN-AR-PEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~-IvvINKiD~~~-a~-~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
+.+.++.|++||||.|++|++|||++|+-+|++.|++. +|++||.|..+ +. .+-+.-++++++.+++++.+ +.||
T Consensus 135 ItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd--~~Pv 212 (449)
T KOG0460|consen 135 ITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGD--NTPV 212 (449)
T ss_pred hcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCC--CCCe
Confidence 99999999999999999999999999999999999987 57899999984 32 34456689999999998755 6899
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecC
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNG 447 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~ 447 (793)
+.+||+......+++.....+..|+|++-+++|.|.++.+.||.|.|-+++..++.|+|+.||+.+|+||+|+.+-+...
T Consensus 213 I~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~ 292 (449)
T KOG0460|consen 213 IRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGH 292 (449)
T ss_pred eecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCceeehhheeeecCCceEEEEEEeecccccCCEEEEecc
Confidence 99999875544444433345789999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCceeEeEEEEeecCceEEecccCCCcEEEE--ecc--ceeecCCeEeCCCCCCC
Q psy1760 448 PDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI--EEICIGSTICDPSKPNG 502 (793)
Q Consensus 448 ~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i--~gl--~~i~iGdtl~~~~~~~~ 502 (793)
++..+..|+.|..|. +.+++|.|||.+++ .|+ ++++.|.++|.++...+
T Consensus 293 --~~~lkttvtgiemF~----K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGsvk~ 345 (449)
T KOG0460|consen 293 --NKTLKTTVTGIEMFR----KSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGSVKP 345 (449)
T ss_pred --CcceeeEeehHHHHH----HHHHhcccccceehhhhcCCHHHHhcccEEecCCcccc
Confidence 445678899999887 88999999999986 566 58999999999887544
No 67
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-37 Score=315.37 Aligned_cols=282 Identities=27% Similarity=0.399 Sum_probs=236.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
-||+.+||+|||||||..++..................|..+.|++|||||......++..++.+-.+|+|||+||.++|
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvKNM 92 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNM 92 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHHHH
Confidence 59999999999999999998654221111111223345889999999999999999999999999999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCcc-EEEEecccCCCC--ChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNA--RPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~-IvvINKiD~~~a--~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
.....+.|++||||+|.+|++|||++|+..+++.|+|. ++++||+|..+. ..+.+..+++++|..++...+ +.|+
T Consensus 93 ItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd--~~Pi 170 (394)
T COG0050 93 ITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGD--DTPI 170 (394)
T ss_pred hhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCC--Ccce
Confidence 99999999999999999999999999999999999987 678999999863 245677789999999888643 6899
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecC
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNG 447 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~ 447 (793)
+..||+....... .+...+.+|++++-+++|.|.++.+.||.|.|-+++...+.|++++|||.+|+|++|+.+.+...
T Consensus 171 i~gSal~ale~~~--~~~~~i~eLm~avd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~ 248 (394)
T COG0050 171 IRGSALKALEGDA--KWEAKIEELMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGI 248 (394)
T ss_pred eechhhhhhcCCc--chHHHHHHHHHHHHhcCCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEEecc
Confidence 9999986532221 12346789999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCCCceeEeEEEEeecCceEEecccCCCcEEEE--ecc--ceeecCCeEeCCCCCCC
Q psy1760 448 PDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI--EEICIGSTICDPSKPNG 502 (793)
Q Consensus 448 ~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i--~gl--~~i~iGdtl~~~~~~~~ 502 (793)
...++..++.+..|. +..+++.|||.|.+ .|+ +++..|.+|+.+..-.|
T Consensus 249 --~~~~kttvtgvemfr----k~ld~~~AGdnvg~llRg~~r~~veRGqvLakpgsi~p 301 (394)
T COG0050 249 --KETQKTTVTGVEMFR----KLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGSIKP 301 (394)
T ss_pred --cccceeEEEhHHHHH----HHHhccccCCCcceEEEeccccceecceEeecCCcccc
Confidence 223456788887675 78899999999986 454 58999999998876433
No 68
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=1.9e-35 Score=337.36 Aligned_cols=278 Identities=24% Similarity=0.303 Sum_probs=226.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccc------------ccc-----ccccccchhhccccceEEeeeeeEEeecCe
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKN------------QNI-----NARIMDSNEIEKERGITIFSKNCSIEYNGT 273 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~------------~~v-----~~~~~D~~~~e~erGiTi~~~~~~~~~~~~ 273 (793)
.+|+++||+|+|||||+++|++.++.+... +.. ..+++|..+.|++||+|++.....+.++++
T Consensus 28 ~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~~ 107 (474)
T PRK05124 28 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKR 107 (474)
T ss_pred eEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCCc
Confidence 589999999999999999999998877642 111 146899999999999999999999999999
Q ss_pred EEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCc-cEEEEecccCCCCC---hhhhHhHH
Q psy1760 274 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR---PEWVVDAT 349 (793)
Q Consensus 274 ~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip-~IvvINKiD~~~a~---~~~v~~~i 349 (793)
.++|||||||.+|..++..+++.+|++|+||||.+|+++||++++..+..++++ +|+|+||+|+.+++ +.++.+++
T Consensus 108 ~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l 187 (474)
T PRK05124 108 KFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIREDY 187 (474)
T ss_pred EEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998875 57899999997543 22333333
Q ss_pred HHHHhhhcccccccCccEEEeecCCCCccccccc--ccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEE
Q psy1760 350 FDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIG 427 (793)
Q Consensus 350 ~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~ 427 (793)
.+++..++. ....|++++||++|.++.+... +|+....|++.| +.+|+|....+.||+|+|..++...+..+..
T Consensus 188 ~~~~~~~~~---~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L-~~i~~~~~~~~~p~r~~I~~v~~~~~~~~g~ 263 (474)
T PRK05124 188 LTFAEQLPG---NLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVL-ETVDIQRVVDAQPFRFPVQYVNRPNLDFRGY 263 (474)
T ss_pred HHHHHhcCC---CCCceEEEEEeecCCCcccccccccccchhhHHHHH-hhcCCCCCCCCCCceeeEEEEEecCCcccce
Confidence 333333331 1247899999999998876542 466667788865 7788777777899999999887644432335
Q ss_pred EEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--ccceeecCCeEeCCCCC
Q psy1760 428 IGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GIEEICIGSTICDPSKP 500 (793)
Q Consensus 428 ~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--gl~~i~iGdtl~~~~~~ 500 (793)
.|+|.+|+|++||.|.+.|. | ...+|++|+.+. .++++|.|||.|+|. +..++..||+||+++.+
T Consensus 264 ~G~V~sG~l~~Gd~v~i~P~--~--~~~~VksI~~~~----~~v~~A~aG~~V~l~L~~~~~i~rG~VL~~~~~~ 330 (474)
T PRK05124 264 AGTLASGVVKVGDRVKVLPS--G--KESNVARIVTFD----GDLEEAFAGEAITLVLEDEIDISRGDLLVAADEA 330 (474)
T ss_pred EEEEEeEEEecCCEEEEecC--C--ceEEEEEEEEcC----ccccCcCCCCEEEEEeCCccccCCccEEECCCCC
Confidence 79999999999999999987 3 468999999775 578999999999986 34568899999997654
No 69
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=1.1e-35 Score=337.29 Aligned_cols=278 Identities=28% Similarity=0.378 Sum_probs=233.3
Q ss_pred cceeeeecccCCcceehhhhhhccCcccccc------------c---cccccccchhhccccceEEeeeeeEEeecCeEE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQ------------N---INARIMDSNEIEKERGITIFSKNCSIEYNGTRI 275 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~------------~---v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i 275 (793)
.||+++||+|+|||||+++|+..++.+.... . ...+++|..+.|+++|+|++.....+.++++.+
T Consensus 8 ~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i 87 (426)
T TIGR00483 8 INVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYEV 87 (426)
T ss_pred eEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeEE
Confidence 5899999999999999999999877664321 0 014689999999999999999999999999999
Q ss_pred EEecCCCcccchHHHHHHhhccCcEEEEEeCCCC---CCchhHHHHHHHHHcCCc-cEEEEecccCCCCC---hhhhHhH
Q psy1760 276 NIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG---PMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR---PEWVVDA 348 (793)
Q Consensus 276 ~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g---~~~qt~~~l~~~~~~~ip-~IvvINKiD~~~a~---~~~v~~~ 348 (793)
+|||||||.+|...+..+++.+|++|+|+|++++ ..+|+.+++..+...+.+ +|||+||+|+.+.+ ++...++
T Consensus 88 ~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~e 167 (426)
T TIGR00483 88 TIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKE 167 (426)
T ss_pred EEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHH
Confidence 9999999999999999999999999999999999 888999988888877764 67899999997543 3345566
Q ss_pred HHHHHhhhcccccccCccEEEeecCCCCcccccc--cccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceE
Q psy1760 349 TFDLFDKLCATEEQLDFPVIYTSALHGYANENSK--ARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKI 426 (793)
Q Consensus 349 i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~--~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v 426 (793)
+.+++...+... ..+|++++||++|.++.+.. .+|.....|+++| +.+++|..+.+.||+|+|+++++.++.|++
T Consensus 168 i~~~~~~~g~~~--~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l-~~~~~~~~~~~~p~r~~i~~v~~~~g~G~v 244 (426)
T TIGR00483 168 VSNLIKKVGYNP--DTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEAL-DALEPPEKPTDKPLRIPIQDVYSITGVGTV 244 (426)
T ss_pred HHHHHHHcCCCc--ccceEEEeeccccccccccccCCccccchHHHHHH-hcCCCCCCccCCCcEEEEEEEEecCCCeEE
Confidence 676666555432 24689999999999876543 2455567899998 567777777789999999999999999999
Q ss_pred EEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEE--ecc--ceeecCCeEeCCCC
Q psy1760 427 GIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI--EEICIGSTICDPSK 499 (793)
Q Consensus 427 ~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i--~gl--~~i~iGdtl~~~~~ 499 (793)
+.|+|.+|+|++||.|.+.|. + ...+|++|+.+. .++++|.|||+|++ .++ +++..||+|+++++
T Consensus 245 v~G~v~~G~i~~gd~v~i~P~--~--~~~~VksI~~~~----~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~ 313 (426)
T TIGR00483 245 PVGRVETGVLKPGDKVVFEPA--G--VSGEVKSIEMHH----EQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDN 313 (426)
T ss_pred EEEEEccceeecCCEEEECCC--C--cEEEEEEEEECC----cccCEEcCCCEEEEEECCCChhhcccceEEecCCC
Confidence 999999999999999999987 3 468999999765 78999999999988 465 46899999998754
No 70
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=2e-34 Score=325.36 Aligned_cols=260 Identities=24% Similarity=0.296 Sum_probs=213.9
Q ss_pred ccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee---------------c---
Q psy1760 210 DKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY---------------N--- 271 (793)
Q Consensus 210 e~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~---------------~--- 271 (793)
..||+++||+|||||||+.+|.+.. .|....|.+||+|++.....+.+ .
T Consensus 34 ~~~ig~~GHVDhGKTtLv~aLtg~~-------------~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~ 100 (460)
T PTZ00327 34 TINIGTIGHVAHGKSTVVKALSGVK-------------TVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSK 100 (460)
T ss_pred cEEEEEEccCCCCHHHHHHHHhCCC-------------cccchhhHHhCCchhccccccccccCcccCCcccccccCCCc
Confidence 4689999999999999999997441 26678999999999887765421 1
Q ss_pred ---------------CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCC-CCchhHHHHHHHHHcCCcc-EEEEec
Q psy1760 272 ---------------GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQTRFVTRKALKLGFKP-IVVVNK 334 (793)
Q Consensus 272 ---------------~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g-~~~qt~~~l~~~~~~~ip~-IvvINK 334 (793)
...++|+|||||.+|..++.++++.+|+++|||||.++ +++||++++..+..++++. |+|+||
T Consensus 101 ~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNK 180 (460)
T PTZ00327 101 PDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNK 180 (460)
T ss_pred ccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEec
Confidence 24799999999999999999999999999999999996 8999999999999999974 789999
Q ss_pred ccCCCC-ChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEE
Q psy1760 335 IDRSNA-RPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQ 413 (793)
Q Consensus 335 iD~~~a-~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~ 413 (793)
+|+.+. ..++..+++++++.... ...+|++++||++|. |++.|+++|.+.+|.|..+.+.||+++
T Consensus 181 iDlv~~~~~~~~~~ei~~~l~~~~----~~~~~iipVSA~~G~----------nI~~Ll~~L~~~lp~~~r~~~~p~r~~ 246 (460)
T PTZ00327 181 IDLVKEAQAQDQYEEIRNFVKGTI----ADNAPIIPISAQLKY----------NIDVVLEYICTQIPIPKRDLTSPPRMI 246 (460)
T ss_pred ccccCHHHHHHHHHHHHHHHHhhc----cCCCeEEEeeCCCCC----------CHHHHHHHHHhhCCCCCCCCCCCcEEE
Confidence 999742 24455666666654432 135799999999998 999999999889999988888999999
Q ss_pred EEEEeee--------CCCceEEEEEEeecccccCCEEEEecCC-----CCCC----CceeEeEEEEeecCceEEecccCC
Q psy1760 414 IISLEYS--------SYLGKIGIGRILSGRIKSLQDVVIMNGP-----DDKP----NKAKINQIRVFKGLDRVLVNEALS 476 (793)
Q Consensus 414 V~~~~~~--------~~~G~v~~grV~sG~lk~G~~v~~~~~~-----~g~~----~~~kV~~i~~~~G~~~~~v~~a~a 476 (793)
|.+++.. ++.|.|+.|+|.+|+|++||.|.+.|.+ +|+. ...+|++|+.+. .++++|.|
T Consensus 247 Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~----~~v~~a~a 322 (460)
T PTZ00327 247 VIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAEN----NELQYAVP 322 (460)
T ss_pred EEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEECC----eECCEEcC
Confidence 9977643 3589999999999999999999999862 2221 246899999754 89999999
Q ss_pred CcEEEEe-----cc--ceeecCCeEeCCCCC
Q psy1760 477 GDIVLIT-----GI--EEICIGSTICDPSKP 500 (793)
Q Consensus 477 GdIv~i~-----gl--~~i~iGdtl~~~~~~ 500 (793)
||.|+|. ++ +++..|++|++++.+
T Consensus 323 G~~vai~l~ld~~v~~~dv~rG~Vl~~~~~~ 353 (460)
T PTZ00327 323 GGLIGVGTTIDPTLTRADRLVGQVLGYPGKL 353 (460)
T ss_pred CCEEEEEeccCCCcchhhcccccEEEcCCCC
Confidence 9999995 33 357789999987543
No 71
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=9.4e-34 Score=335.66 Aligned_cols=277 Identities=24% Similarity=0.278 Sum_probs=226.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccc------------cc----c-ccccccchhhccccceEEeeeeeEEeecCe
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKN------------QN----I-NARIMDSNEIEKERGITIFSKNCSIEYNGT 273 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~------------~~----v-~~~~~D~~~~e~erGiTi~~~~~~~~~~~~ 273 (793)
.+|+|+||+|+|||||+++|++..+.+... +. . ..+++|..+.|++||+|++.....+.+++.
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~ 104 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKR 104 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCc
Confidence 479999999999999999999998876522 11 1 147899999999999999999999999999
Q ss_pred EEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCc-cEEEEecccCCCCC---hhhhHhHH
Q psy1760 274 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR---PEWVVDAT 349 (793)
Q Consensus 274 ~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip-~IvvINKiD~~~a~---~~~v~~~i 349 (793)
+++|+|||||.+|..++..++..+|++|||||+.+|+++||++++..+...+++ +|||+||+|+.+.+ ++++.+++
T Consensus 105 ~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i 184 (632)
T PRK05506 105 KFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADY 184 (632)
T ss_pred eEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988875 57799999997532 23344555
Q ss_pred HHHHhhhcccccccCccEEEeecCCCCccccccc--ccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEE
Q psy1760 350 FDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIG 427 (793)
Q Consensus 350 ~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~ 427 (793)
.+++..++.. +.|++++||++|.++.+... +|.....|++.| +.++.|....++||++.|..++...+.++..
T Consensus 185 ~~~~~~~~~~----~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l-~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g~ 259 (632)
T PRK05506 185 RAFAAKLGLH----DVTFIPISALKGDNVVTRSARMPWYEGPSLLEHL-ETVEIASDRNLKDFRFPVQYVNRPNLDFRGF 259 (632)
T ss_pred HHHHHHcCCC----CccEEEEecccCCCccccccCCCcccHhHHHHHH-hcCCCCCCcCCCCceeeEEEEEecCCCceEE
Confidence 5555444442 46799999999998765432 455557788877 5667666667899999999887654333446
Q ss_pred EEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--ccceeecCCeEeCCCCC
Q psy1760 428 IGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GIEEICIGSTICDPSKP 500 (793)
Q Consensus 428 ~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--gl~~i~iGdtl~~~~~~ 500 (793)
.|+|.+|+|++||.|.+.|. + ...+|++|+.+. .++++|.|||.|+|. +-.++..|++||+++++
T Consensus 260 ~G~v~~G~l~~gd~v~i~P~--~--~~~~VksI~~~~----~~~~~a~aG~~v~i~l~~~~~i~rG~vL~~~~~~ 326 (632)
T PRK05506 260 AGTVASGVVRPGDEVVVLPS--G--KTSRVKRIVTPD----GDLDEAFAGQAVTLTLADEIDISRGDMLARADNR 326 (632)
T ss_pred EEEEecceeecCCEEEEcCC--C--ceEEEEEEEECC----ceeCEEcCCCeEEEEecCccccCCccEEecCCCC
Confidence 79999999999999999987 3 468999999765 579999999999986 33468899999998764
No 72
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=3.6e-33 Score=330.92 Aligned_cols=418 Identities=22% Similarity=0.285 Sum_probs=285.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+|+||+|||||||+++|..... .....+|+|.......+.|+++.++|||||||.+|...+
T Consensus 291 pvV~ImGhvd~GKTSLl~~Lr~~~v----------------~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~ 354 (787)
T PRK05306 291 PVVTIMGHVDHGKTSLLDAIRKTNV----------------AAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMR 354 (787)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCc----------------cccccCceeeeccEEEEEECCEEEEEEECCCCccchhHH
Confidence 5899999999999999999964311 012246899988888999999999999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEe
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYT 370 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~ 370 (793)
.++++.+|++|||+|+.+|+++||.++|..+...++|+|||+||+|+++++++.+.+++.+. .+.......++|++++
T Consensus 355 ~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~--~~~~e~~g~~vp~vpv 432 (787)
T PRK05306 355 ARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEY--GLVPEEWGGDTIFVPV 432 (787)
T ss_pred HhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHh--cccHHHhCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999887776666655431 1111111124799999
Q ss_pred ecCCCCcccccccccCCchhhHHHHHhhc--CcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCC
Q psy1760 371 SALHGYANENSKARQGNMIPLFEAILKYV--PVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGP 448 (793)
Q Consensus 371 SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l--p~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~ 448 (793)
||++|. |++.|+++|.... ..+..+++.|+.+.|++++.+++.|.+++++|++|+|++||.|++.+.
T Consensus 433 SAktG~----------GI~eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g~~- 501 (787)
T PRK05306 433 SAKTGE----------GIDELLEAILLQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGTT- 501 (787)
T ss_pred eCCCCC----------CchHHHHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCEEEECCc-
Confidence 999998 9999999986432 223445678999999999999999999999999999999999988432
Q ss_pred CCCCCceeEeEEEEeecCceEEecccCCCcEEEEecccee-ecCCeEeCCCCC------------------------CCC
Q psy1760 449 DDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEI-CIGSTICDPSKP------------------------NGL 503 (793)
Q Consensus 449 ~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i-~iGdtl~~~~~~------------------------~~l 503 (793)
..+|..|+ +.+..++++|.|||+|.|.|++++ .+||+|+...+. ..+
T Consensus 502 -----~gkVr~m~---~~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~l 573 (787)
T PRK05306 502 -----YGRVRAMV---DDNGKRVKEAGPSTPVEILGLSGVPQAGDEFVVVEDEKKAREIAEYRQEKAREKKLARQQRVSL 573 (787)
T ss_pred -----EEEEEEEE---CCCCCCCCEEcCCCeEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHHhhhccccCH
Confidence 35566655 445578999999999999999998 899999843222 112
Q ss_pred CCC--ccCCC---ceEEEEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCC-------------CCeEEE
Q psy1760 504 PML--NIDEP---TLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHD-------------DSIYEV 565 (793)
Q Consensus 504 ~~~--~~~~P---~~~~~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~-------------~~~~~v 565 (793)
..+ .+.++ .+.+.+.+.. .| +...|.+.|.++..+++.++|-...-. +. +++
T Consensus 574 ~~~~~~~~~~~~~~~~~iikad~------~G---s~eai~~~l~~l~~~~v~~~i~~~~vG~it~~Dv~la~~~~a-~ii 643 (787)
T PRK05306 574 ENLFEQMKEGEVKELNLIIKADV------QG---SVEALKDSLEKLSTDEVKVNIIHSGVGAITESDVTLAAASNA-III 643 (787)
T ss_pred HHhhhhhhcCCceEEEEEEEeCC------cc---hHHHHHHHHHhhcccCCceEEEeeccCCCCHHHHHHHHhcCC-EEE
Confidence 211 11122 3555555432 22 457899999999999999998765321 22 333
Q ss_pred EecchhhHHHHHHHHHhcCceEEEecCEEEEEEec------CeeeCeEEEEEEEeCCcchHHHHHHhh-ccCceeeeeee
Q psy1760 566 SGRGELHLTILIENMRREGYELSVSRPRVIFKTLN------GELYEPYENLFVDIEEINQGIIMQKLN-YRGGDLKNIEI 638 (793)
Q Consensus 566 ~g~GelhL~il~e~lrreg~e~~vs~P~V~yre~~------g~llEP~~~~~i~vp~e~~G~v~~~l~-~rrG~~~~~~~ 638 (793)
|.+----.-+....+++|+++... .|||+=.+ ..+|+|.+.-.+.-+.+.. .... ++.|.+.+..-
T Consensus 644 -~Fnv~~~~~~~~~a~~~~v~i~~~--~iIY~l~d~~~~~~~~~l~~~~~e~~~g~a~v~----~vF~~~k~~~iaGc~V 716 (787)
T PRK05306 644 -GFNVRPDAKARKLAEQEGVDIRYY--SIIYDLIDDVKAAMSGMLEPEYEEEIIGQAEVR----EVFKVSKVGTIAGCMV 716 (787)
T ss_pred -EEcCCCCHHHHHHHHHcCCEEEEe--ChHHHHHHHHHHHHhhccCchhheeeeeeEEEE----EEEecCCCCeEEEEEE
Confidence 333222222333344567777655 67776322 2356665443332222111 1111 12244444432
Q ss_pred cc-----CCeEE------EEEEechhhhcchHHHHcccccceEEEEeEecceEecc
Q psy1760 639 NE-----KERVR------LEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 639 ~~-----~~~~~------i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
.. +..++ +.|...+..|-.|..+......|. -+-..|.+|..+.
T Consensus 717 ~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~-ecgi~~~~~~d~~ 771 (787)
T PRK05306 717 TEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGY-ECGIGLENYNDIK 771 (787)
T ss_pred eeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCC-EEEEEeeccccCC
Confidence 10 11111 124444555666666666666666 4444455554443
No 73
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=1.8e-33 Score=329.06 Aligned_cols=251 Identities=24% Similarity=0.285 Sum_probs=213.6
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee-cCeEEEEecCCCcccchHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~-~~~~i~iiDTPGh~df~~ev 290 (793)
-|+++||+|||||||+++|.+. .+|..+.|+++|+|++.....+.. ++..++|||||||.+|..++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~-------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m 68 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV-------------NADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNM 68 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-------------CCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHH
Confidence 3789999999999999999643 136777899999999988777765 46789999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCcc-EEEEecccCCCC-ChhhhHhHHHHHHhhhcccccccCccEE
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNA-RPEWVVDATFDLFDKLCATEEQLDFPVI 368 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~-IvvINKiD~~~a-~~~~v~~~i~~~~~~l~~~~~~l~~Pvi 368 (793)
.+++..+|++++|||+.+|+++||++++..+...++|. |||+||+|+.+. ..+.+.+++.+.+...+.. ..|++
T Consensus 69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~----~~~ii 144 (614)
T PRK10512 69 LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFA----EAKLF 144 (614)
T ss_pred HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCC----CCcEE
Confidence 99999999999999999999999999999999999986 789999999752 3445566666666544332 36899
Q ss_pred EeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCC
Q psy1760 369 YTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGP 448 (793)
Q Consensus 369 ~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~ 448 (793)
++||++|. |++.|++.|.+. ++|....++||+|+|.+++..++.|+|+.|+|.+|+|++||.|.+.|.
T Consensus 145 ~VSA~tG~----------gI~~L~~~L~~~-~~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~- 212 (614)
T PRK10512 145 VTAATEGR----------GIDALREHLLQL-PEREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGV- 212 (614)
T ss_pred EEeCCCCC----------CCHHHHHHHHHh-hccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCC-
Confidence 99999998 999999999654 555555789999999999999999999999999999999999999876
Q ss_pred CCCCCceeEeEEEEeecCceEEecccCCCcEEEE--ec-c--ceeecCCeEeCCC
Q psy1760 449 DDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TG-I--EEICIGSTICDPS 498 (793)
Q Consensus 449 ~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i--~g-l--~~i~iGdtl~~~~ 498 (793)
+ ...+|++|+.+. .++++|.|||.|++ +| + +++..||+||+++
T Consensus 213 -~--~~~~VrsIq~~~----~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~ 260 (614)
T PRK10512 213 -N--KPMRVRGLHAQN----QPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADA 260 (614)
T ss_pred -C--CcEEEEEEecCC----cCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCC
Confidence 3 468999999764 78999999999988 45 5 3689999999863
No 74
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-33 Score=290.92 Aligned_cols=296 Identities=26% Similarity=0.313 Sum_probs=238.5
Q ss_pred ceeeeecccCCcceehhhhhhccCcccccccc-----------------ccccccchhhccccceEEeeeeeEEeecCeE
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNI-----------------NARIMDSNEIEKERGITIFSKNCSIEYNGTR 274 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v-----------------~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~ 274 (793)
++..+|+++.|||||+.+||+.+..+...+.. -+.++|....|+|.||||+.....|..+.++
T Consensus 8 RfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~KRk 87 (431)
T COG2895 8 RFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEKRK 87 (431)
T ss_pred eEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccccce
Confidence 67889999999999999999988766443211 1356788999999999999999999999999
Q ss_pred EEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCcc-EEEEecccCCCCC---hhhhHhHHH
Q psy1760 275 INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNAR---PEWVVDATF 350 (793)
Q Consensus 275 i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~-IvvINKiD~~~a~---~~~v~~~i~ 350 (793)
+.+.|||||..|..+|..+.+-||++|++|||..|+..||+.|.-.+..+|++. ++++||||+.+.+ |+++..+..
T Consensus 88 FIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~ 167 (431)
T COG2895 88 FIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYL 167 (431)
T ss_pred EEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988 6789999998864 334444444
Q ss_pred HHHhhhcccccccCccEEEeecCCCCccccccc--ccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEE
Q psy1760 351 DLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGI 428 (793)
Q Consensus 351 ~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~ 428 (793)
.+..+++... .-++|+||+.|.|+...+. +|+....||+.| +.+........+||+++|..+.....-=|-..
T Consensus 168 ~fa~~L~~~~----~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~L-E~v~i~~~~~~~~~RfPVQ~V~Rp~~dfRGya 242 (431)
T COG2895 168 AFAAQLGLKD----VRFIPISALLGDNVVSKSENMPWYKGPTLLEIL-ETVEIADDRSAKAFRFPVQYVNRPNLDFRGYA 242 (431)
T ss_pred HHHHHcCCCc----ceEEechhccCCcccccccCCCcccCccHHHHH-hhccccccccccceeeceEEecCCCCcccccc
Confidence 4444455443 3589999999999876653 688889999987 66666555667889999998865433234468
Q ss_pred EEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccc--eeecCCeEeCCCCCCCCCCC
Q psy1760 429 GRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIE--EICIGSTICDPSKPNGLPML 506 (793)
Q Consensus 429 grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~--~i~iGdtl~~~~~~~~l~~~ 506 (793)
|+|.+|++++||.|.+.|+ | ...+|++|..|.| +.++|.||+-|.+.=-+ ++..||.|+..+.++. +.-
T Consensus 243 GtiasG~v~~Gd~vvvlPs--G--~~s~V~~Ivt~dg----~~~~A~aG~aVtl~L~deidisRGd~i~~~~~~~~-~~~ 313 (431)
T COG2895 243 GTIASGSVKVGDEVVVLPS--G--KTSRVKRIVTFDG----ELAQASAGEAVTLVLADEIDISRGDLIVAADAPPA-VAD 313 (431)
T ss_pred eeeeccceecCCeEEEccC--C--CeeeEEEEeccCC----chhhccCCceEEEEEcceeecccCcEEEccCCCcc-hhh
Confidence 9999999999999999998 5 4689999999985 78899999999987444 4678999999887644 333
Q ss_pred ccCCCceEEEEEecCCCCC
Q psy1760 507 NIDEPTLTINFMVNNSPLA 525 (793)
Q Consensus 507 ~~~~P~~~~~~~~~~~p~~ 525 (793)
.+. ...+|..+.|+.
T Consensus 314 ~f~----A~vvWm~~~pl~ 328 (431)
T COG2895 314 AFD----ADVVWMDEEPLL 328 (431)
T ss_pred hcc----eeEEEecCCCCC
Confidence 343 445566666653
No 75
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=5e-32 Score=314.74 Aligned_cols=298 Identities=26% Similarity=0.294 Sum_probs=235.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCe-EEEEecCCCcccchHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT-RINIIDTPGHADFGGE 289 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~-~i~iiDTPGh~df~~e 289 (793)
..|+++||+|||||||+++|..... .....+|+|.......+.|++. .++|||||||.+|...
T Consensus 88 p~V~I~Ghvd~GKTSLl~~l~~~~v----------------~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~ 151 (587)
T TIGR00487 88 PVVTIMGHVDHGKTSLLDSIRKTKV----------------AQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSM 151 (587)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCc----------------ccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhH
Confidence 5799999999999999999965311 0122468898888888888655 9999999999999999
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccc--cccCccE
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE--EQLDFPV 367 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~--~~l~~Pv 367 (793)
+.++++.+|++|||+|+.+|+++||.++++.+...++|+|+++||+|+++++++++.+++.+ .+... ...+.|+
T Consensus 152 r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~----~g~~~~~~~~~~~~ 227 (587)
T TIGR00487 152 RARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSE----YGLVPEDWGGDTIF 227 (587)
T ss_pred HHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHH----hhhhHHhcCCCceE
Confidence 99999999999999999999999999999999999999999999999987766655554432 22111 1124689
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHh--hcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEe
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILK--YVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 445 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~--~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~ 445 (793)
+++||++|. |+++|+++|.. .++....+++.|+++.|++++.+++.|++++++|++|+|++||.|.+.
T Consensus 228 v~iSAktGe----------GI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~ 297 (587)
T TIGR00487 228 VPVSALTGD----------GIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVG 297 (587)
T ss_pred EEEECCCCC----------ChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEEC
Confidence 999999998 99999998854 234444466799999999999999999999999999999999999886
Q ss_pred cCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEecccee-ecCCeEeCCCCC------------------------
Q psy1760 446 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEI-CIGSTICDPSKP------------------------ 500 (793)
Q Consensus 446 ~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i-~iGdtl~~~~~~------------------------ 500 (793)
+. ..||++|+...| ..+++|.||++|.|.|++++ ..||++.-.++.
T Consensus 298 ~~------~~kVr~l~~~~g---~~v~~a~~g~~v~i~Gl~~~p~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~ 368 (587)
T TIGR00487 298 AA------YGRVRAMIDENG---KSVKEAGPSKPVEILGLSDVPAAGDEFIVFKDEKDARLVAEKRAGKLRQKALSRSVK 368 (587)
T ss_pred CC------ccEEEEEECCCC---CCCCEECCCCEEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 54 467889887555 57899999999999999987 889999732211
Q ss_pred CCCCCCc-----cCCCceEEEEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEe
Q psy1760 501 NGLPMLN-----IDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQN 556 (793)
Q Consensus 501 ~~l~~~~-----~~~P~~~~~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~ 556 (793)
..+..+. -..|.+.+.+.+.+. | +...|.+.|.++..++++++|-..
T Consensus 369 ~~~~~~~~~~~~~~~~~~~viikad~~------G---s~eal~~~l~~~~~~~~~~~v~~~ 420 (587)
T TIGR00487 369 VTLDNLFEQIKEGELKELNIILKADVQ------G---SLEAIKNSLEKLNNEEVKVKVIHS 420 (587)
T ss_pred cchhHhhhhhhccCCceEEEEEEeCCc------c---hHHHHHHHHHhhcccCCeEEEEEe
Confidence 0111111 123667766665432 2 457899999999889999988765
No 76
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=2.1e-32 Score=307.85 Aligned_cols=259 Identities=27% Similarity=0.337 Sum_probs=209.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec-------------------
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN------------------- 271 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~------------------- 271 (793)
.||+++||+|||||||+++|... ++|..+.|++||+|+......+.|.
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~-------------~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGV-------------WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPN 76 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCe-------------ecccCHhHHhcCcEEEecccccccccccccCccccccccccccc
Confidence 58999999999999999999432 3588889999999999876554432
Q ss_pred -------CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCC-CchhHHHHHHHHHcCCc-cEEEEecccCCCCC-
Q psy1760 272 -------GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR- 341 (793)
Q Consensus 272 -------~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~~~ip-~IvvINKiD~~~a~- 341 (793)
.+.++|||||||.+|..++.+.+..+|++++|+|+.++. ..++..++..+...+++ +++|+||+|+.+.+
T Consensus 77 ~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~ 156 (411)
T PRK04000 77 CGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKER 156 (411)
T ss_pred cccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchh
Confidence 268999999999999999999999999999999999987 89999999998888875 68899999997532
Q ss_pred hhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeee-
Q psy1760 342 PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYS- 420 (793)
Q Consensus 342 ~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~- 420 (793)
.....+++..++.... ...+|++++||++|. |++.|++.|.+.+|.|..+.+.||+++|.++++.
T Consensus 157 ~~~~~~~i~~~l~~~~----~~~~~ii~vSA~~g~----------gI~~L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~ 222 (411)
T PRK04000 157 ALENYEQIKEFVKGTV----AENAPIIPVSALHKV----------NIDALIEAIEEEIPTPERDLDKPPRMYVARSFDVN 222 (411)
T ss_pred HHHHHHHHHHHhcccc----CCCCeEEEEECCCCc----------CHHHHHHHHHHhCCCCCCCCCCCceEEEEeeeeec
Confidence 1122344444433211 124789999999998 9999999999989988877899999999998743
Q ss_pred -------CCCceEEEEEEeecccccCCEEEEecCCC----CC----CCceeEeEEEEeecCceEEecccCCCcEEEEe--
Q psy1760 421 -------SYLGKIGIGRILSGRIKSLQDVVIMNGPD----DK----PNKAKINQIRVFKGLDRVLVNEALSGDIVLIT-- 483 (793)
Q Consensus 421 -------~~~G~v~~grV~sG~lk~G~~v~~~~~~~----g~----~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~-- 483 (793)
++.|.|+.|||.+|+|++||.|.+.|... |. ....+|++|+.+. .++++|.|||.|+|+
T Consensus 223 ~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~----~~~~~a~~G~~v~i~l~ 298 (411)
T PRK04000 223 KPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGG----EKVEEARPGGLVGVGTK 298 (411)
T ss_pred CCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEECC----EECCEEcCCCEEEEEec
Confidence 45678999999999999999999998611 11 1246899999765 899999999999885
Q ss_pred ---cc--ceeecCCeEeCCCCC
Q psy1760 484 ---GI--EEICIGSTICDPSKP 500 (793)
Q Consensus 484 ---gl--~~i~iGdtl~~~~~~ 500 (793)
++ +++..|++||+++++
T Consensus 299 ~~~~i~~~~i~~G~vl~~~~~~ 320 (411)
T PRK04000 299 LDPSLTKADALAGSVAGKPGTL 320 (411)
T ss_pred cCCCCCHHHccCccEEEcCCCC
Confidence 33 357889999998665
No 77
>KOG0458|consensus
Probab=100.00 E-value=1.9e-32 Score=302.95 Aligned_cols=275 Identities=28% Similarity=0.317 Sum_probs=238.5
Q ss_pred cceeeeecccCCcceehhhhhhccCcccccc---------------ccccccccchhhccccceEEeeeeeEEeecCeEE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERGITIFSKNCSIEYNGTRI 275 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~---------------~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i 275 (793)
-+.+++||+++|||||+.+||+..+.+...+ ....|++|....||+||+|.+.+...|+.+.+.+
T Consensus 178 l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~~~ 257 (603)
T KOG0458|consen 178 LNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSKIV 257 (603)
T ss_pred eEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCceeE
Confidence 4789999999999999999999887765422 1236999999999999999999999999999999
Q ss_pred EEecCCCcccchHHHHHHhhccCcEEEEEeCCCC-------CCchhHHHHHHHHHcCCcc-EEEEecccCCCC---Chhh
Q psy1760 276 NIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-------PMPQTRFVTRKALKLGFKP-IVVVNKIDRSNA---RPEW 344 (793)
Q Consensus 276 ~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g-------~~~qt~~~l~~~~~~~ip~-IvvINKiD~~~a---~~~~ 344 (793)
+|+|+|||.||..++......||.++|||||+.| +..||++|...++.+|+.. ||+|||||..++ ||++
T Consensus 258 tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~RF~e 337 (603)
T KOG0458|consen 258 TLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDRFEE 337 (603)
T ss_pred EEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHHHHH
Confidence 9999999999999999999999999999999865 4579999999999999976 789999999987 5778
Q ss_pred hHhHHHHHH-hhhcccccccCccEEEeecCCCCcccccc-----cccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEe
Q psy1760 345 VVDATFDLF-DKLCATEEQLDFPVIYTSALHGYANENSK-----ARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLE 418 (793)
Q Consensus 345 v~~~i~~~~-~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~-----~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~ 418 (793)
+.+.+..+| ...++.+. ++-++++|++.|.|....+ ..|+....||+.|.. +..|.+..+.||++.|.+++
T Consensus 338 Ik~~l~~fL~~~~gf~es--~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~~~~kPl~ltIsdi~ 414 (603)
T KOG0458|consen 338 IKNKLSSFLKESCGFKES--SVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPERPIDKPLRLTISDIY 414 (603)
T ss_pred HHHHHHHHHHHhcCcccC--CcceEecccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCCCcccCCeEEEhhhee
Confidence 888888888 55666554 4568999999999876542 368899999999966 77777778889999999999
Q ss_pred eeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--ccc--eeecCCeE
Q psy1760 419 YSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GIE--EICIGSTI 494 (793)
Q Consensus 419 ~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--gl~--~i~iGdtl 494 (793)
..+..|..+.|||.+|.|++||.|+++++ .....|++|..- ..+...|.|||.|.++ +++ .+.+||++
T Consensus 415 ~~~~~~~~i~gkiesG~iq~gqkl~i~~s----~e~~~vk~l~~~----~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~ 486 (603)
T KOG0458|consen 415 PLPSSGVSISGKIESGYIQPGQKLYIMTS----REDATVKGLTSN----DEPKTWAVAGDNVSLKLPGILPNLVQVGDIA 486 (603)
T ss_pred ecCCCeeEEEEEEeccccccCCEEEEecC----cceEEEEeeecC----CCcceeEeeCCEEEEecCccChhhcccceee
Confidence 99999999999999999999999999987 457889999854 4788999999999874 643 57899999
Q ss_pred eC
Q psy1760 495 CD 496 (793)
Q Consensus 495 ~~ 496 (793)
|.
T Consensus 487 ~~ 488 (603)
T KOG0458|consen 487 DS 488 (603)
T ss_pred ec
Confidence 94
No 78
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=4.9e-32 Score=304.93 Aligned_cols=259 Identities=27% Similarity=0.354 Sum_probs=209.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee--------------------
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-------------------- 270 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~-------------------- 270 (793)
.||+++||+|||||||+++|... .+|....|++||+|+......+.+
T Consensus 5 ~~i~iiG~~~~GKSTL~~~Lt~~-------------~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (406)
T TIGR03680 5 VNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPN 71 (406)
T ss_pred EEEEEEccCCCCHHHHHHHHhCe-------------ecccCHhHHHcCceeEecccccccccccccCccccccccccccc
Confidence 58999999999999999999532 257888899999999887554431
Q ss_pred ------cCeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCC-CchhHHHHHHHHHcCCc-cEEEEecccCCCCC-
Q psy1760 271 ------NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR- 341 (793)
Q Consensus 271 ------~~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~~~ip-~IvvINKiD~~~a~- 341 (793)
.+..+++||||||.+|..++.++++.+|++++||||.+|. ++||++++..+...+++ +++|+||+|+.+..
T Consensus 72 ~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~ 151 (406)
T TIGR03680 72 CGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEK 151 (406)
T ss_pred cccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHH
Confidence 1468999999999999999999999999999999999998 89999999999888875 68899999997532
Q ss_pred hhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeee-
Q psy1760 342 PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYS- 420 (793)
Q Consensus 342 ~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~- 420 (793)
.....+++.+++.... ...+|++++||++|. |++.|+++|...+|.|..+.+.||+|+|++++..
T Consensus 152 ~~~~~~~i~~~l~~~~----~~~~~ii~vSA~~g~----------gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~ 217 (406)
T TIGR03680 152 ALENYEEIKEFVKGTV----AENAPIIPVSALHNA----------NIDALLEAIEKFIPTPERDLDKPPLMYVARSFDVN 217 (406)
T ss_pred HHHHHHHHHhhhhhcc----cCCCeEEEEECCCCC----------ChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeec
Confidence 1223344444443221 125789999999998 9999999999889988777889999999998843
Q ss_pred -------CCCceEEEEEEeecccccCCEEEEecCC----CCC----CCceeEeEEEEeecCceEEecccCCCcEEEEe--
Q psy1760 421 -------SYLGKIGIGRILSGRIKSLQDVVIMNGP----DDK----PNKAKINQIRVFKGLDRVLVNEALSGDIVLIT-- 483 (793)
Q Consensus 421 -------~~~G~v~~grV~sG~lk~G~~v~~~~~~----~g~----~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~-- 483 (793)
++.|.|+.|+|.+|+|++||.|.+.|.. +|. ....+|++|+.+. .++++|.|||.|+|.
T Consensus 218 ~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~----~~~~~a~~G~~v~i~l~ 293 (406)
T TIGR03680 218 KPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGG----YKVEEARPGGLVGVGTK 293 (406)
T ss_pred CCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEECC----EECCEEcCCCEEEEeec
Confidence 4477899999999999999999999861 111 1246899999764 899999999999984
Q ss_pred ---cc--ceeecCCeEeCCCCC
Q psy1760 484 ---GI--EEICIGSTICDPSKP 500 (793)
Q Consensus 484 ---gl--~~i~iGdtl~~~~~~ 500 (793)
++ +++..|++||+++.+
T Consensus 294 ~~~~i~~~dv~~G~vl~~~~~~ 315 (406)
T TIGR03680 294 LDPALTKADALAGQVVGKPGTL 315 (406)
T ss_pred cCCCCCHHHcccccEEEcCCCC
Confidence 33 357789999997643
No 79
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=1.1e-31 Score=313.27 Aligned_cols=252 Identities=26% Similarity=0.292 Sum_probs=210.9
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+|+++||+|||||||+++|.+.. +|..+.|.++|+|++.....+.+++..++|||||||.+|..++.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~-------------~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~ 68 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIA-------------ADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAI 68 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc-------------CcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHH
Confidence 68999999999999999997531 25566788999999999999999999999999999999999999
Q ss_pred HHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCc-cEEEEecccCCCCC-hhhhHhHHHHHHhhhcccccccCccEEE
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR-PEWVVDATFDLFDKLCATEEQLDFPVIY 369 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip-~IvvINKiD~~~a~-~~~v~~~i~~~~~~l~~~~~~l~~Pvi~ 369 (793)
.++..+|++++|||+.+|+++||.+++..+...++| .|+|+||+|+.+.+ .+.+.+++.+++...+.. ..+|+++
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~---~~~~ii~ 145 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFL---KNAKIFK 145 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCC---CCCcEEE
Confidence 999999999999999999999999999999999999 89999999997532 233445566655544321 1478999
Q ss_pred eecCCCCcccccccccCCchhhHHHHHhhcCcCc-CCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCC
Q psy1760 370 TSALHGYANENSKARQGNMIPLFEAILKYVPVHK-DNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGP 448 (793)
Q Consensus 370 ~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~-~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~ 448 (793)
+||++|. |++++++.|.+.++... ...++||+|+|.+++..++.|+++.|+|.+|+|++||.|.+.|.
T Consensus 146 vSA~tG~----------GI~eL~~~L~~l~~~~~~~~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~- 214 (581)
T TIGR00475 146 TSAKTGQ----------GIGELKKELKNLLESLDIKRIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPI- 214 (581)
T ss_pred EeCCCCC----------CchhHHHHHHHHHHhCCCcCcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCC-
Confidence 9999998 88888887765543321 12478999999999999999999999999999999999999987
Q ss_pred CCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--ccc--eeecCCeEeCC
Q psy1760 449 DDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GIE--EICIGSTICDP 497 (793)
Q Consensus 449 ~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--gl~--~i~iGdtl~~~ 497 (793)
+ ...+|++|+.+. .++++|.|||.|+|. |++ ++..|..++++
T Consensus 215 -~--~~~~Vr~iq~~~----~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~ 260 (581)
T TIGR00475 215 -N--HEVRVKAIQAQN----QDVEIAYAGQRIALNLMDVEPESLKRGLLILTP 260 (581)
T ss_pred -C--ceEEEeEEEECC----ccCCEEECCCEEEEEeCCCCHHHcCCceEEcCC
Confidence 3 468999999764 789999999999984 653 58899776654
No 80
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=9.9e-31 Score=282.67 Aligned_cols=250 Identities=28% Similarity=0.351 Sum_probs=218.8
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
.|+..||.+||||||+.++.+. ..|..+.+.+||+|++.....+..++..+.|||+|||.+|...+.
T Consensus 2 ii~t~GhidHgkT~L~~altg~-------------~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~mi 68 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGG-------------VTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLL 68 (447)
T ss_pred eEEEeeeeeccchhhhhhhccc-------------ccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHH
Confidence 4678999999999999999654 237889999999999999999999999999999999999999999
Q ss_pred HHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCcc-EEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEe
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYT 370 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~-IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~ 370 (793)
.++...|+++||||+.+|+++||.+|+..+..+|++. |+|+||+|+.+. .++.+.+.+.+..+. .-+.|++..
T Consensus 69 ag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~--~r~e~~i~~Il~~l~----l~~~~i~~~ 142 (447)
T COG3276 69 AGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE--ARIEQKIKQILADLS----LANAKIFKT 142 (447)
T ss_pred hhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH--HHHHHHHHHHHhhcc----ccccccccc
Confidence 9999999999999999999999999999999999998 999999999753 233333444443333 224678999
Q ss_pred ecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCC
Q psy1760 371 SALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDD 450 (793)
Q Consensus 371 SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g 450 (793)
|+.+|. |+++|-+.|.+....+..+.+.||+++|.+.|...++|+|++|.++||++++||.+++.|.
T Consensus 143 s~~~g~----------GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~--- 209 (447)
T COG3276 143 SAKTGR----------GIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPI--- 209 (447)
T ss_pred ccccCC----------CHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecC---
Confidence 999998 9999999997766556778899999999999999999999999999999999999999987
Q ss_pred CCCceeEeEEEEeecCceEEecccCCCcEEEEe--cc--ceeecCCeEeCCC
Q psy1760 451 KPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GI--EEICIGSTICDPS 498 (793)
Q Consensus 451 ~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--gl--~~i~iGdtl~~~~ 498 (793)
.+..+|++|+.+. +++++|.||+.|+++ |. +++..||.|.+++
T Consensus 210 -~k~v~VRsIq~~d----~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~ 256 (447)
T COG3276 210 -NKEVRVRSIQAHD----VDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPE 256 (447)
T ss_pred -CCeEEEEeeeecC----cchhhccccceeeeecCCCCHHHhhcccEeccCC
Confidence 3579999999776 899999999999985 55 4689999998865
No 81
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.97 E-value=2.5e-30 Score=304.14 Aligned_cols=249 Identities=27% Similarity=0.304 Sum_probs=199.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec----CeEEEEecCCCcccc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN----GTRINIIDTPGHADF 286 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~----~~~i~iiDTPGh~df 286 (793)
++|+++||+|||||||+++|...... ....+|+|.......+.|. +..++|||||||.+|
T Consensus 245 p~V~IvGhvdvGKTSLld~L~~~~~~----------------~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F 308 (742)
T CHL00189 245 PIVTILGHVDHGKTTLLDKIRKTQIA----------------QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF 308 (742)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCc----------------cccCCccccccceEEEEEEecCCceEEEEEECCcHHHH
Confidence 58999999999999999999754322 1233677776655555553 589999999999999
Q ss_pred hHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 287 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 287 ~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
...+.++++.+|++|||||+.+|+++||.+++..+...++|+|||+||+|+..++++.+.+++... .+........+|
T Consensus 309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~--~ll~e~~g~~vp 386 (742)
T CHL00189 309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKY--NLIPEKWGGDTP 386 (742)
T ss_pred HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHh--ccchHhhCCCce
Confidence 999999999999999999999999999999999999999999999999999876655555544322 000011112478
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhcC--cCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEE
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYVP--VHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVI 444 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp--~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~ 444 (793)
++++||++|. |++.|+++|....+ ....+++.|+.+.|+++..+++.|++++++|++|+|++||.|++
T Consensus 387 vv~VSAktG~----------GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~vv~ 456 (742)
T CHL00189 387 MIPISASQGT----------NIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHIGDIIVI 456 (742)
T ss_pred EEEEECCCCC----------CHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEecCCEEEE
Confidence 9999999998 99999999876542 33345678999999999999999999999999999999999988
Q ss_pred ecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccc-eeecCCeEeC
Q psy1760 445 MNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIE-EICIGSTICD 496 (793)
Q Consensus 445 ~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~-~i~iGdtl~~ 496 (793)
.+. ..+|..++ +....++++|.|||+|.|.|+. ...+||+|.-
T Consensus 457 g~~------~gkVr~m~---~~~~~~v~~a~pgdiV~I~gl~~~~~~Gd~l~v 500 (742)
T CHL00189 457 GTS------YAKIRGMI---NSLGNKINLATPSSVVEIWGLSSVPATGEHFQV 500 (742)
T ss_pred CCc------ceEEEEEE---cCCCcCccEEcCCCceEecCcccCCCCCCEEEE
Confidence 643 35666665 4455789999999999999995 4578999854
No 82
>KOG1145|consensus
Probab=99.96 E-value=3.2e-29 Score=273.78 Aligned_cols=249 Identities=29% Similarity=0.360 Sum_probs=207.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee-cCeEEEEecCCCcccchHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGHADFGGE 289 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~-~~~~i~iiDTPGh~df~~e 289 (793)
.-|.|+||+|||||||+++|-+.+-+-. .-.|||.......+.. +|.+++|+|||||+.|...
T Consensus 154 PVVTiMGHVDHGKTTLLD~lRks~VAA~----------------E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aM 217 (683)
T KOG1145|consen 154 PVVTIMGHVDHGKTTLLDALRKSSVAAG----------------EAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAM 217 (683)
T ss_pred CeEEEeecccCChhhHHHHHhhCceehh----------------hcCCccceeceEEEecCCCCEEEEecCCcHHHHHHH
Confidence 3589999999999999999976532221 1247887666555544 6899999999999999999
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEE
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIY 369 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~ 369 (793)
..|+.+.+|.++|||.|.+|+++||.+.++.|+..++|+||++||||+++++++++..++... .+...+..-++++++
T Consensus 218 RaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~--gi~~E~~GGdVQvip 295 (683)
T KOG1145|consen 218 RARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQ--GIVVEDLGGDVQVIP 295 (683)
T ss_pred HhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHc--CccHHHcCCceeEEE
Confidence 999999999999999999999999999999999999999999999999999999888876543 111112222588999
Q ss_pred eecCCCCcccccccccCCchhhHHHHHhh--cCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecC
Q psy1760 370 TSALHGYANENSKARQGNMIPLFEAILKY--VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNG 447 (793)
Q Consensus 370 ~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~--lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~ 447 (793)
+||++|. |++.|.++++-. +..-..++.+|+...|.....+++.|.+++.-|-+|||++|+.+....
T Consensus 296 iSAl~g~----------nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~G~- 364 (683)
T KOG1145|consen 296 ISALTGE----------NLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVAGK- 364 (683)
T ss_pred eecccCC----------ChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEeccccccccEEEEec-
Confidence 9999998 888888887542 223344678999999999999999999999999999999999887643
Q ss_pred CCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceee-cCCeEeC
Q psy1760 448 PDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC-IGSTICD 496 (793)
Q Consensus 448 ~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~-iGdtl~~ 496 (793)
.-+||+.|+...| +++++|.|+.-|-|.|++++. .||-+-.
T Consensus 365 -----~w~KVr~l~D~nG---k~i~~A~Ps~pv~V~GwkdlP~aGD~vle 406 (683)
T KOG1145|consen 365 -----SWCKVRALFDHNG---KPIDEATPSQPVEVLGWKDLPIAGDEVLE 406 (683)
T ss_pred -----hhhhhhhhhhcCC---CCccccCCCCceEeecccCCCCCCceEEE
Confidence 3589999998887 789999999999999999874 5887743
No 83
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.96 E-value=3.1e-28 Score=256.08 Aligned_cols=277 Identities=25% Similarity=0.342 Sum_probs=230.1
Q ss_pred cccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec-----------------
Q psy1760 209 LDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN----------------- 271 (793)
Q Consensus 209 le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~----------------- 271 (793)
..-+++..||+|||||||+.+|. +|...........++|....|-++|.|-+.+..-+-++
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~Lv--tG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLV--TGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEE--ecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 34588999999999999999997 44444444445677899999999999887776665553
Q ss_pred ------CeEEEEecCCCcccchHHHHHHh--hccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCC-CCh
Q psy1760 272 ------GTRINIIDTPGHADFGGEVERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN-ARP 342 (793)
Q Consensus 272 ------~~~i~iiDTPGh~df~~ev~~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~-a~~ 342 (793)
+.-+.|+||-||.-+.....+.+ ...|..+|+|.|.+|++..|++|+-.+..+++|+||+++|+|... .++
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ddr~ 273 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDRF 273 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcHHHH
Confidence 34689999999999999888886 568999999999999999999999999999999999999999964 467
Q ss_pred hhhHhHHHHHHhhhcc------------------cccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC-c
Q psy1760 343 EWVVDATFDLFDKLCA------------------TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH-K 403 (793)
Q Consensus 343 ~~v~~~i~~~~~~l~~------------------~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p-~ 403 (793)
..+.+++..+++..+. ...+.-.|++++|+.+|. |++ +|+.+...+|.. .
T Consensus 274 ~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~----------Gld-lL~e~f~~Lp~rr~ 342 (527)
T COG5258 274 QGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGE----------GLD-LLDEFFLLLPKRRR 342 (527)
T ss_pred HHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCc----------cHH-HHHHHHHhCCcccc
Confidence 8888888888764321 111224799999999997 665 555566888877 4
Q ss_pred CCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe
Q psy1760 404 DNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT 483 (793)
Q Consensus 404 ~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~ 483 (793)
.+.++||.|+|.+++...++|.++.|.|.+|.|+.||++++.|..+|+....+|++|+... ..+++|.||+|++++
T Consensus 343 ~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh~----~rvdsa~aG~iig~A 418 (527)
T COG5258 343 WDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMHH----YRVDSAKAGSIIGIA 418 (527)
T ss_pred cCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEee----EEeccccCCcEEEEE
Confidence 4678999999999999999999999999999999999999998878988889999999554 899999999999875
Q ss_pred --ccc--eeecCCeEeCCCCCCC
Q psy1760 484 --GIE--EICIGSTICDPSKPNG 502 (793)
Q Consensus 484 --gl~--~i~iGdtl~~~~~~~~ 502 (793)
|++ .+..|.+|+....|.+
T Consensus 419 l~gv~~e~lerGMVl~~~~~pka 441 (527)
T COG5258 419 LKGVEKEELERGMVLSAGADPKA 441 (527)
T ss_pred ecccCHHHHhcceEecCCCCchh
Confidence 775 4899999987645544
No 84
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.96 E-value=3.7e-29 Score=258.33 Aligned_cols=190 Identities=42% Similarity=0.612 Sum_probs=157.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec----------CeEEEEecC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN----------GTRINIIDT 280 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~----------~~~i~iiDT 280 (793)
|||+++||++||||||+++|+..++.+........+++|....|++||+|+.+....+.|. ++.++||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 6999999999999999999999988776655445688999999999999999988887776 788999999
Q ss_pred CCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCC----CChhhhHhHHHHHH---
Q psy1760 281 PGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN----ARPEWVVDATFDLF--- 353 (793)
Q Consensus 281 PGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~----a~~~~v~~~i~~~~--- 353 (793)
|||.+|..++.++++.+|++|+|+|+.+|+..||+++++.+...++|+|+|+||+|+.. .++++..+.+.+.+
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~~ 160 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQRLARIIEQV 160 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999862 23334444444333
Q ss_pred ----hhhcc------cccccCc-c----EEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 354 ----DKLCA------TEEQLDF-P----VIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 354 ----~~l~~------~~~~l~~-P----vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
..+.. .++++.+ | |+++||+.||+. ++. .-..+-.+|+.|++++|+|
T Consensus 161 n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f-~~~-~f~~~~~~~~~~~~~~~~p 222 (222)
T cd01885 161 NAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGF-TII-KFARIYAVLEMVVKHLPSP 222 (222)
T ss_pred hHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEe-ccc-cccchHHHHHHHHhhCCCC
Confidence 33321 1233445 7 999999999987 332 2346789999999999987
No 85
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.96 E-value=2.2e-29 Score=254.46 Aligned_cols=180 Identities=38% Similarity=0.500 Sum_probs=156.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccc--cccccchhhccccceEEeeeeeEEe--ecCeEEEEecCCCcccc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIE--YNGTRINIIDTPGHADF 286 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~--~~~~D~~~~e~erGiTi~~~~~~~~--~~~~~i~iiDTPGh~df 286 (793)
+||+++||+|||||||+++|+...+.....+... .+.+|..+.|+++|+|+......+. ++++.++|+|||||.+|
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f 83 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDF 83 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHH
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccce
Confidence 6999999999999999999999887765544322 4567999999999999999999999 99999999999999999
Q ss_pred hHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHH-hhhcccccccCc
Q psy1760 287 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLF-DKLCATEEQLDF 365 (793)
Q Consensus 287 ~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~-~~l~~~~~~l~~ 365 (793)
..++.++++.+|++|+|||+.+|+.+||.+++..+..+++|.|||+||+|+...++.+..+++.+.| +..+.... ..+
T Consensus 84 ~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 162 (188)
T PF00009_consen 84 IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGE-EIV 162 (188)
T ss_dssp HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTT-STE
T ss_pred eecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccccCcc-ccc
Confidence 9999999999999999999999999999999999999999999999999999777778888887444 44443321 357
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
|++++||++|+ |++.|+++|.+++|+
T Consensus 163 ~vi~~Sa~~g~----------gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 163 PVIPISALTGD----------GIDELLEALVELLPS 188 (188)
T ss_dssp EEEEEBTTTTB----------THHHHHHHHHHHS--
T ss_pred eEEEEecCCCC----------CHHHHHHHHHHhCcC
Confidence 99999999999 999999999999985
No 86
>KOG0459|consensus
Probab=99.96 E-value=2.3e-28 Score=258.85 Aligned_cols=280 Identities=27% Similarity=0.347 Sum_probs=237.9
Q ss_pred cceeeeecccCCcceehhhhhhccCcccccc---------------ccccccccchhhccccceEEeeeeeEEeecCeEE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERGITIFSKNCSIEYNGTRI 275 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~---------------~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i 275 (793)
.|+.++||+++||||+-+.++..++....+. ...+|.||.+..|+++|-|+....+.|+....++
T Consensus 80 vn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~~f 159 (501)
T KOG0459|consen 80 VNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENKRF 159 (501)
T ss_pred ceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecceeE
Confidence 5899999999999999999998887765321 2337899999999999999999999999999999
Q ss_pred EEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCC-------chhHHHHHHHHHcCCcc-EEEEecccCCCC-----Ch
Q psy1760 276 NIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPM-------PQTRFVTRKALKLGFKP-IVVVNKIDRSNA-----RP 342 (793)
Q Consensus 276 ~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~-------~qt~~~l~~~~~~~ip~-IvvINKiD~~~a-----~~ 342 (793)
+|+|+|||..|..++...+++||.++||++|..|-. .||+++..+++..++.. |+++||||-+.. ++
T Consensus 160 tiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~eRy 239 (501)
T KOG0459|consen 160 TILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERY 239 (501)
T ss_pred EeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcchhhH
Confidence 999999999999999999999999999999976532 49999999999999977 788999998743 56
Q ss_pred hhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccc---cccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEee
Q psy1760 343 EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSK---ARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEY 419 (793)
Q Consensus 343 ~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~---~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~ 419 (793)
++..+.+..++..++.+... +.-.+++|+.+|.++.+.. -+|.....+|+.|.+ +|...++.++||++.|.+-+.
T Consensus 240 ~E~~~k~~~fLr~~g~n~~~-d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld~-l~~~~R~~~GP~~~pI~~Kyk 317 (501)
T KOG0459|consen 240 EECKEKLQPFLRKLGFNPKP-DKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLDE-LPHLERILNGPIRCPVANKYK 317 (501)
T ss_pred HHHHHHHHHHHHHhcccCCC-CceeeecccccccchhhcccccCCcccCCccceehhc-cCcccccCCCCEEeehhhhcc
Confidence 77888888888877765432 3447889999998876654 367777888888855 999999999999999987666
Q ss_pred eCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEE--eccc--eeecCCeEe
Q psy1760 420 SSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGIE--EICIGSTIC 495 (793)
Q Consensus 420 ~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i--~gl~--~i~iGdtl~ 495 (793)
| .|+|..|+|.||++++||++.++|. .....|.+|+. +.++++.+.|||.+-| .|++ ++..|-+||
T Consensus 318 d--mGTvv~GKvEsGsi~kg~~lvvMPn----k~~veV~~I~~----ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~ 387 (501)
T KOG0459|consen 318 D--MGTVVGGKVESGSIKKGQQLVVMPN----KTNVEVLGIYS----DDVETDRVAPGENVKLRLKGIEEEDISPGFILC 387 (501)
T ss_pred c--cceEEEEEecccceecCCeEEEccC----CcceEEEEEec----ccceeeeccCCcceEEEecccchhhccCceEEe
Confidence 5 7899999999999999999999987 45678888874 3589999999999987 5875 689999999
Q ss_pred CCCCCCC
Q psy1760 496 DPSKPNG 502 (793)
Q Consensus 496 ~~~~~~~ 502 (793)
++.++..
T Consensus 388 ~~~n~~~ 394 (501)
T KOG0459|consen 388 SPNNPCK 394 (501)
T ss_pred cCCCccc
Confidence 9998754
No 87
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.95 E-value=3.2e-28 Score=247.07 Aligned_cols=190 Identities=28% Similarity=0.397 Sum_probs=156.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.||+++||+|+|||||+++|++...............+|..+.|++||+|++.....+.+++..++|+|||||.+|..++
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~ 82 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNM 82 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHH
Confidence 58999999999999999999976432221111223578999999999999999999999999999999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCc-cEEEEecccCCCC--ChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNA--RPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip-~IvvINKiD~~~a--~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
.+++..+|++++|||+.+|+.+||++++..+...++| +|+|+||+|+... ..+.+.+++.+.+..++.+.. ++|+
T Consensus 83 ~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~--~v~i 160 (195)
T cd01884 83 ITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD--NTPI 160 (195)
T ss_pred HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc--CCeE
Confidence 9999999999999999999999999999999999998 5789999999632 133456678888877776433 6899
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
+++||++|.+..+...+..++..|+++|.+..|+|
T Consensus 161 ipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~~~~~ 195 (195)
T cd01884 161 VRGSALKALEGDDPNKWVKKILELLDALDSYIPTP 195 (195)
T ss_pred EEeeCccccCCCCCCcchhcHhHHHHHHHhCCCCC
Confidence 99999999976542222235899999998777765
No 88
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=3.3e-27 Score=261.75 Aligned_cols=251 Identities=27% Similarity=0.332 Sum_probs=206.5
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec---CeEEEEecCCCcccchH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---GTRINIIDTPGHADFGG 288 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~---~~~i~iiDTPGh~df~~ 288 (793)
-|+++||++||||||++.+-+..-. ....-|||.......+.++ ...++|+|||||+.|..
T Consensus 7 vVtimGHVDHGKTtLLD~IR~t~Va----------------~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~ 70 (509)
T COG0532 7 VVTIMGHVDHGKTTLLDKIRKTNVA----------------AGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTA 70 (509)
T ss_pred EEEEeCcccCCccchhhhHhcCccc----------------cccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHH
Confidence 5799999999999999999644211 1223589998888888884 46999999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEE
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVI 368 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi 368 (793)
...|+.+.+|+++||||+.+|++|||.+.++.++..+.|+||++||||+++++++.+..++.+. .+....+.-+..++
T Consensus 71 mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~--gl~~E~~gg~v~~V 148 (509)
T COG0532 71 MRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY--GLVPEEWGGDVIFV 148 (509)
T ss_pred HHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHc--CCCHhhcCCceEEE
Confidence 9999999999999999999999999999999999999999999999999999998888877654 22222233357899
Q ss_pred EeecCCCCcccccccccCCchhhHHHHHhhcC--cCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEec
Q psy1760 369 YTSALHGYANENSKARQGNMIPLFEAILKYVP--VHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMN 446 (793)
Q Consensus 369 ~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp--~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~ 446 (793)
++||++|. |+++|++.|.-... .-...++.+....|..+.-+.+.|.++..-|++|+|++||.+.+..
T Consensus 149 pvSA~tg~----------Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~GD~iv~g~ 218 (509)
T COG0532 149 PVSAKTGE----------GIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVAGG 218 (509)
T ss_pred EeeccCCC----------CHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEecCCEEEEcc
Confidence 99999998 99999998854322 2334668899999999999999999999999999999999999875
Q ss_pred CCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceee-cCCeEeCCCC
Q psy1760 447 GPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC-IGSTICDPSK 499 (793)
Q Consensus 447 ~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~-iGdtl~~~~~ 499 (793)
. ..+|..++.-.| .++..+.++--+-+.|++++. .||.....++
T Consensus 219 ~------~g~I~t~v~~~~---~~i~~a~ps~~v~i~g~~evp~Ag~~~~v~~~ 263 (509)
T COG0532 219 E------YGRVRTMVDDLG---KPIKEAGPSKPVEILGLSEVPAAGDVFIVVKD 263 (509)
T ss_pred C------CCceEEeehhcC---CCccccCCCCCeEEeccccccccCceEEecCC
Confidence 5 356776665444 678888888888888998874 5777655443
No 89
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.95 E-value=8.4e-28 Score=255.76 Aligned_cols=143 Identities=43% Similarity=0.572 Sum_probs=133.3
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccc--cccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~--~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 289 (793)
||+++||+|+|||||+++|++.+|.+.+.+.+. ++++|..+.|++||+|+++....+.|+++++++||||||.+|..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 789999999999999999999988877655543 688999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHh
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFD 354 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~ 354 (793)
+.++++.+|++|+|||+.+|++.+|..+|+.+...++|.++|+||+|+.+++++.+++++++.+.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~ 145 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLG 145 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998888888888887764
No 90
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.95 E-value=1.1e-27 Score=250.40 Aligned_cols=181 Identities=44% Similarity=0.630 Sum_probs=161.8
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccc--cccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~--~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 289 (793)
||+++||+|+|||||+++|++.++.+.+.+.+. .+++|+.+.|++||+|+......+.|+++++++||||||.+|..+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 789999999999999999999988877766543 577899999999999999999999999999999999999999999
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhh-------------
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL------------- 356 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l------------- 356 (793)
+.++++.+|++++|+|+.+|+..++..+|+.+...++|.++|+||+|+..++++++++++++.|..-
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~ 160 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPNI 160 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEeeee
Confidence 9999999999999999999999999999999999999999999999999999999999998877430
Q ss_pred --------------ccccc---------------------------ccCccEEEeecCCCCcccccccccCCchhhHHHH
Q psy1760 357 --------------CATEE---------------------------QLDFPVIYTSALHGYANENSKARQGNMIPLFEAI 395 (793)
Q Consensus 357 --------------~~~~~---------------------------~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I 395 (793)
...++ ..-+||+++||.++. |+..||+.|
T Consensus 161 ~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~----------Gv~~ll~~~ 230 (237)
T cd04168 161 CETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGI----------GIEELLEGI 230 (237)
T ss_pred eeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCc----------CHHHHHHHH
Confidence 00000 001899999999998 999999999
Q ss_pred HhhcCcC
Q psy1760 396 LKYVPVH 402 (793)
Q Consensus 396 ~~~lp~p 402 (793)
..++|+|
T Consensus 231 ~~~~p~~ 237 (237)
T cd04168 231 TKLFPTS 237 (237)
T ss_pred HHhcCCC
Confidence 9999987
No 91
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=7.2e-27 Score=241.43 Aligned_cols=255 Identities=29% Similarity=0.366 Sum_probs=201.9
Q ss_pred cccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec-----------------
Q psy1760 209 LDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN----------------- 271 (793)
Q Consensus 209 le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~----------------- 271 (793)
-+-||+.+||++||||||+.+|.+- ..|....|-+|||||....+...+.
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGv-------------wT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C 75 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGV-------------WTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKC 75 (415)
T ss_pred cceEeeeeeecccchhhheehhhce-------------eeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCC
Confidence 3469999999999999999999643 2377888999999998766543321
Q ss_pred ---------CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCC-CCchhHHHHHHHHHcCCcc-EEEEecccCCCC
Q psy1760 272 ---------GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQTRFVTRKALKLGFKP-IVVVNKIDRSNA 340 (793)
Q Consensus 272 ---------~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g-~~~qt~~~l~~~~~~~ip~-IvvINKiD~~~a 340 (793)
-+.+.|+|.|||.-....|.++....|+|||||+|++. ++|||++|+-.+.-.|++. |++-||+|+...
T Consensus 76 ~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~ 155 (415)
T COG5257 76 PNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSR 155 (415)
T ss_pred CCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecH
Confidence 14799999999999999999999999999999999986 7999999999999999976 667799999763
Q ss_pred -ChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEee
Q psy1760 341 -RPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEY 419 (793)
Q Consensus 341 -~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~ 419 (793)
+..+-.++++++++.--+ -+.|++++||..+. |++.|+++|.+++|.|.++.+.|.+|+|...|.
T Consensus 156 E~AlE~y~qIk~FvkGt~A----e~aPIIPiSA~~~~----------NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFD 221 (415)
T COG5257 156 ERALENYEQIKEFVKGTVA----ENAPIIPISAQHKA----------NIDALIEAIEKYIPTPERDLDKPPRMYVARSFD 221 (415)
T ss_pred HHHHHHHHHHHHHhccccc----CCCceeeehhhhcc----------CHHHHHHHHHHhCCCCccCCCCCceEEEEeecc
Confidence 223344455555443322 25799999999998 999999999999999999999999999998775
Q ss_pred e--------CCCceEEEEEEeecccccCCEEEEecCC----CCC----CCceeEeEEEEeecCceEEecccCCCcEEEE-
Q psy1760 420 S--------SYLGKIGIGRILSGRIKSLQDVVIMNGP----DDK----PNKAKINQIRVFKGLDRVLVNEALSGDIVLI- 482 (793)
Q Consensus 420 ~--------~~~G~v~~grV~sG~lk~G~~v~~~~~~----~g~----~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i- 482 (793)
. ...|-|.-|.+.+|.+++||++.+.|.- +|+ ....+|.+|+ ....++++|.+|-.++|
T Consensus 222 VNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~----ag~~~~~ea~PGGLvgvG 297 (415)
T COG5257 222 VNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQ----AGGEDVEEARPGGLVGVG 297 (415)
T ss_pred cCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEE----eCCeeeeeccCCceEEEe
Confidence 4 3467789999999999999999998752 222 1235677776 33488999999999998
Q ss_pred eccce-eecCCeE
Q psy1760 483 TGIEE-ICIGSTI 494 (793)
Q Consensus 483 ~gl~~-i~iGdtl 494 (793)
++++- +..+|-|
T Consensus 298 T~lDP~ltKaD~L 310 (415)
T COG5257 298 TKLDPTLTKADAL 310 (415)
T ss_pred cccCcchhhhhhh
Confidence 46653 3344444
No 92
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.94 E-value=2.1e-26 Score=268.38 Aligned_cols=272 Identities=22% Similarity=0.240 Sum_probs=186.2
Q ss_pred cceeeeecccCCcceehhhhhhccCcccccccc----ccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNI----NARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 286 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v----~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 286 (793)
..|+++||+|||||||+++|.+........+.. .....+....+...|.+.......+.+. .++|||||||.+|
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~iDTPG~e~f 84 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIP--GLLFIDTPGHEAF 84 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccC--CEEEEECCChHHH
Confidence 368999999999999999997543221111100 0111111111111111111000111111 2799999999999
Q ss_pred hHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCC-CC---------------------hhh
Q psy1760 287 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN-AR---------------------PEW 344 (793)
Q Consensus 287 ~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~-a~---------------------~~~ 344 (793)
...+.++++.+|++++|+|+.+|+++||.+++..+...++|+++|+||+|+.. +. +++
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~ 164 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEE 164 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999852 11 111
Q ss_pred hHhHHHHHHhhhccccc--------ccCccEEEeecCCCCcccccccccCCchhhHHHHHh----hcCcC-cCCCCCCce
Q psy1760 345 VVDATFDLFDKLCATEE--------QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK----YVPVH-KDNSNNPLQ 411 (793)
Q Consensus 345 v~~~i~~~~~~l~~~~~--------~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~----~lp~p-~~~~~~p~~ 411 (793)
.+.++...|...+...+ ..+.|++++||++|. |+++|++.+.. +++.+ ..+.+.|++
T Consensus 165 ~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGe----------Gi~dLl~~i~~~~~~~l~~~l~~~~~~~~~ 234 (586)
T PRK04004 165 KLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGE----------GIPDLLMVLAGLAQRYLEERLKIDVEGPGK 234 (586)
T ss_pred HHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCC----------ChHHHHHHHHHHHHHHHHHhhccCCCCCeE
Confidence 11222223333333221 235789999999998 88888887753 23333 345678999
Q ss_pred EEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeec--------CceEEecccCCCcEEEE-
Q psy1760 412 LQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKG--------LDRVLVNEALSGDIVLI- 482 (793)
Q Consensus 412 ~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G--------~~~~~v~~a~aGdIv~i- 482 (793)
+.|++++.+++.|.+++|+|.+|+|++||.|.+.+. .| ....+|++|....+ .....+++|.|..-|-|
T Consensus 235 ~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~-~~-~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~ 312 (586)
T PRK04004 235 GTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGK-DG-PIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKIS 312 (586)
T ss_pred EEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcC-CC-cceEEEEEEecCcchhhccccccccccccccCCCCceEEE
Confidence 999999999999999999999999999999998876 33 23468999987632 13356666666655555
Q ss_pred -eccceeecCCeEeC
Q psy1760 483 -TGIEEICIGSTICD 496 (793)
Q Consensus 483 -~gl~~i~iGdtl~~ 496 (793)
.|++++..||.+.-
T Consensus 313 ~~gl~~~~~g~~~~v 327 (586)
T PRK04004 313 APDLEDALAGSPLRV 327 (586)
T ss_pred eCCccccCCCCeEEE
Confidence 37877777776643
No 93
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.94 E-value=2.1e-26 Score=233.72 Aligned_cols=192 Identities=67% Similarity=1.067 Sum_probs=171.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
|+|+++|++++|||||+++|+..++.+.....+..+++|....+..+|+|+......+.+++..+++|||||+.+|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 69999999999999999999987666665555556778888899999999999999999999999999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEe
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYT 370 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~ 370 (793)
..+++.+|++++|+|+.+++.+++..++..+...++|+++|+||+|+...+.....+++.+.+..++...++.++|++++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~ 162 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYA 162 (194)
T ss_pred HHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEe
Confidence 99999999999999999998888888888888889999999999999877777788888888777666555667899999
Q ss_pred ecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 371 SALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 371 SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
||++|++..+...+..++.+|++.|.+++|.|
T Consensus 163 Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (194)
T cd01891 163 SAKNGWASLNLEDPSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred ehhccccccccccchhhHHHHHHHHHhcCCCC
Confidence 99999999888777889999999999999986
No 94
>KOG0461|consensus
Probab=99.94 E-value=1.9e-26 Score=239.32 Aligned_cols=246 Identities=24% Similarity=0.280 Sum_probs=204.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec---------CeEEEEecCC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---------GTRINIIDTP 281 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~---------~~~i~iiDTP 281 (793)
-|++++||+|+|||||..+|..-.. ....|.++...+||+|.+.....+... ...++++|+|
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~S---------TaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCP 78 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGS---------TAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCP 78 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhcc---------chhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCC
Confidence 5999999999999999999964421 223488899999999999877665432 2467999999
Q ss_pred CcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCC-----hhhhHhHHHHHHhhh
Q psy1760 282 GHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-----PEWVVDATFDLFDKL 356 (793)
Q Consensus 282 Gh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~-----~~~v~~~i~~~~~~l 356 (793)
||+.....+..+....|..++|||+..|.+.||.+++-....+..+.+||+||+|....+ .++....++.-++..
T Consensus 79 GHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 79 GHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred CcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999888888899999999975431 222333333334333
Q ss_pred cccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeeccc
Q psy1760 357 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRI 436 (793)
Q Consensus 357 ~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~l 436 (793)
+.. -+.|++++||+.|+- +..++.+|.++|.+.+-.|.++.++||.|.|.+.+...+.|+|..|.|.+|+|
T Consensus 159 ~f~---g~~PI~~vsa~~G~~------~~~~i~eL~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~ 229 (522)
T KOG0461|consen 159 GFD---GNSPIVEVSAADGYF------KEEMIQELKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVL 229 (522)
T ss_pred CcC---CCCceeEEecCCCcc------chhHHHHHHHHHHHhhcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeEE
Confidence 333 247999999999962 23389999999999999999999999999999999999999999999999999
Q ss_pred ccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEE
Q psy1760 437 KSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI 482 (793)
Q Consensus 437 k~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i 482 (793)
+.|+.|.+..- ...-||++++.|. .++.+|.+||..++
T Consensus 230 ~ln~~iE~PAL----~e~rkVKslqmf~----~~vtsa~~GdR~g~ 267 (522)
T KOG0461|consen 230 RLNTEIEFPAL----NEKRKVKSLQMFK----QRVTSAAAGDRAGF 267 (522)
T ss_pred ecCcEEeeccc----chhhhhhhHHHHh----hhhhhhhcccceee
Confidence 99999998765 2456899999887 88999999999887
No 95
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.94 E-value=1.8e-26 Score=245.29 Aligned_cols=143 Identities=38% Similarity=0.559 Sum_probs=132.3
Q ss_pred cceeeeecccCCcceehhhhhhccCcccccccc------ccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNI------NARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA 284 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v------~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~ 284 (793)
|||+|+||+|+|||||+++|++.++.+.+.+.+ ..+++|+.+.|++||+|+......+.|+++++++||||||.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 799999999999999999999998888776554 35678999999999999999999999999999999999999
Q ss_pred cchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHH
Q psy1760 285 DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLF 353 (793)
Q Consensus 285 df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~ 353 (793)
+|..++.++++.+|++|+|+|+..++..++..+|+.+...++|+++|+||+|+..+++.++++++++.|
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l 151 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEEL 151 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998999999999999999888877788887765
No 96
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.93 E-value=5.7e-25 Score=255.41 Aligned_cols=255 Identities=24% Similarity=0.271 Sum_probs=182.5
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee------------------cCe
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY------------------NGT 273 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~------------------~~~ 273 (793)
-|+++||+|||||||+++|.+....... ..|+|.......+.+ +..
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e----------------~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~ 69 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKRE----------------AGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIP 69 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccccc----------------CCceecccCeeEeeeccccccccccccccccccccC
Confidence 5899999999999999999865322111 123333222222222 112
Q ss_pred EEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCC-C------h----
Q psy1760 274 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-R------P---- 342 (793)
Q Consensus 274 ~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a-~------~---- 342 (793)
.++|||||||.+|...+.++++.+|++++|+|+++|+++||.+++..+...++|.|+|+||+|+... . +
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~s 149 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESF 149 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHH
Confidence 4899999999999999999999999999999999999999999999999899999999999999631 0 1
Q ss_pred ----hhhHhHHH-------HHHhhhcccc--------cccCccEEEeecCCCCcccccccccCCchhhHHHHHhh----c
Q psy1760 343 ----EWVVDATF-------DLFDKLCATE--------EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY----V 399 (793)
Q Consensus 343 ----~~v~~~i~-------~~~~~l~~~~--------~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~----l 399 (793)
..+.+.+. ..+.+.+... ...++|++++||++|. |+++|+++|... +
T Consensus 150 ak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGe----------GideLl~~l~~l~~~~l 219 (590)
T TIGR00491 150 SKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGE----------GIPELLTMLAGLAQQYL 219 (590)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCC----------ChhHHHHHHHHHHHHHh
Confidence 01111111 1122222221 1225799999999998 899999887542 3
Q ss_pred Cc-CcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCc--------eEE
Q psy1760 400 PV-HKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLD--------RVL 470 (793)
Q Consensus 400 p~-p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~--------~~~ 470 (793)
+. -..+.++|+++.|..++.+.+.|.++.|.|.+|+|++||.|.+.+. +| ....||+.|....+++ ...
T Consensus 220 ~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~-~~-~i~~kVr~l~~~~~l~e~r~~~~~~~~ 297 (590)
T TIGR00491 220 EEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGS-DD-VIVTRVRALLKPRPLEEMRESRKKFQK 297 (590)
T ss_pred hhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccC-CC-cccEEEEEecCCCccccccccccccCC
Confidence 22 2235678999999999999999999999999999999999999887 33 3457899998765321 234
Q ss_pred ecccC--CCcEEEEeccceeecCCeE
Q psy1760 471 VNEAL--SGDIVLITGIEEICIGSTI 494 (793)
Q Consensus 471 v~~a~--aGdIv~i~gl~~i~iGdtl 494 (793)
++++. +|--+.+.|++++..|+.+
T Consensus 298 ~~~~~~~~~~~v~~~~l~~~~aG~~~ 323 (590)
T TIGR00491 298 VDEVVAAAGVKIAAPGLDDVMAGSPI 323 (590)
T ss_pred cceecCCCceeEEecCCCCCCCCCEE
Confidence 45533 4444555677766667665
No 97
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.93 E-value=5.9e-26 Score=235.09 Aligned_cols=185 Identities=31% Similarity=0.343 Sum_probs=153.2
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccc--cc-------------cccccchhhccccceEEeeeeeEEeecCeEEE
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQN--IN-------------ARIMDSNEIEKERGITIFSKNCSIEYNGTRIN 276 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~--v~-------------~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~ 276 (793)
||+++||+|||||||+++|++.++.+.+.+. +. .+++|....|++||+|++.....+.|++++++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 7899999999999999999999888765331 10 24889999999999999999999999999999
Q ss_pred EecCCCcccchHHHHHHhhccCcEEEEEeCCC-------CCCchhHHHHHHHHHcCC-ccEEEEecccCCCC-----Chh
Q psy1760 277 IIDTPGHADFGGEVERILSMVDNVLLLIDAVE-------GPMPQTRFVTRKALKLGF-KPIVVVNKIDRSNA-----RPE 343 (793)
Q Consensus 277 iiDTPGh~df~~ev~~~l~~aD~allVVDa~~-------g~~~qt~~~l~~~~~~~i-p~IvvINKiD~~~a-----~~~ 343 (793)
+||||||.+|..++.++++.+|++|+|||+.+ +...|+..++..+...+. |+|+|+||+|+..+ +++
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999998 567899999988888885 56789999999832 345
Q ss_pred hhHhHHHHHHhhhcccccccCccEEEeecCCCCccccccc--ccCCchhhHHHHHhh
Q psy1760 344 WVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKY 398 (793)
Q Consensus 344 ~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~I~~~ 398 (793)
++.+++.+.+..++... ..+|++++||++|.++.+.+. +|+....|+++|...
T Consensus 161 ~i~~~l~~~l~~~~~~~--~~~~ii~iSA~tg~gi~~~~~~~~w~~g~~l~~~l~~~ 215 (219)
T cd01883 161 EIKKELSPFLKKVGYNP--KDVPFIPISGLTGDNLIEKSENMPWYKGPTLLEALDSL 215 (219)
T ss_pred HHHHHHHHHHHHcCCCc--CCceEEEeecCcCCCCCcCCCCCCCccCCcHHHHHhCC
Confidence 66667766666654432 257899999999999887653 466568999998544
No 98
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.93 E-value=1.1e-25 Score=231.25 Aligned_cols=186 Identities=30% Similarity=0.320 Sum_probs=152.3
Q ss_pred ceeeeecccCCcceehhhhhhccCccccc--cc-------------cccccccchhhccccceEEeeeeeEEeecCeEEE
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKN--QN-------------INARIMDSNEIEKERGITIFSKNCSIEYNGTRIN 276 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~--~~-------------v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~ 276 (793)
+|+|+||+|+|||||+++|++.++.+... +. -..+++|..+.|++||+|++.....+.|++.+++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999999998876521 11 1257899999999999999999999999999999
Q ss_pred EecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCcc-EEEEecccCCCCC---hhhhHhHHHHH
Q psy1760 277 IIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNAR---PEWVVDATFDL 352 (793)
Q Consensus 277 iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~-IvvINKiD~~~a~---~~~v~~~i~~~ 352 (793)
|||||||.+|..++..+++.+|++|+|+|+.+++..++..++..+...+.|. |+|+||+|+.... +..+.++++++
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~ 160 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAF 160 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888888888764 6689999997543 23445566665
Q ss_pred HhhhcccccccCccEEEeecCCCCcccccc--cccCCchhhHHHHHhhcCcC
Q psy1760 353 FDKLCATEEQLDFPVIYTSALHGYANENSK--ARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 353 ~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~--~~~~gi~~Ll~~I~~~lp~p 402 (793)
+..++.. ..|++++||++|.++.+.. ..|+--+.|+++| +.+++|
T Consensus 161 ~~~~~~~----~~~ii~iSA~~g~ni~~~~~~~~w~~g~~~~~~~-~~~~~~ 207 (208)
T cd04166 161 AAKLGIE----DITFIPISALDGDNVVSRSENMPWYSGPTLLEHL-ETVPIA 207 (208)
T ss_pred HHHcCCC----CceEEEEeCCCCCCCccCCCCCCCCCCCcHHHHH-hcCCCC
Confidence 5555432 3579999999999887654 2566568899988 666655
No 99
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.90 E-value=1.4e-23 Score=224.09 Aligned_cols=142 Identities=32% Similarity=0.483 Sum_probs=129.7
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccc--cccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~--~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 289 (793)
||+++||+|+|||||+++|+...+.+.+.+.+. .+++|..+.++++++|+......+.|+++.+++|||||+.+|..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 689999999999999999998887766555443 577899999999999999999999999999999999999999999
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHH
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLF 353 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~ 353 (793)
+.++++.+|++++|+|+..+...++..+|+.+...++|.++|+||+|+..+++...++++++.+
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~ 144 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAF 144 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999888888888887765
No 100
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.90 E-value=4.6e-23 Score=205.47 Aligned_cols=174 Identities=40% Similarity=0.586 Sum_probs=141.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee-----cCeEEEEecCCCccc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-----NGTRINIIDTPGHAD 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~-----~~~~i~iiDTPGh~d 285 (793)
|||+++|++++|||||+++|++..+.+.+.. ....++|....++.+|+|.......+.| .++.++||||||+.+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKRE-MKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCC-CceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence 6899999999999999999998776654322 2345678888899999999888777765 467899999999999
Q ss_pred chHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 286 FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 286 f~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
|...+.++++.+|++|+|+|++++...++...|..+...++|+++|+||+|+.+.+.....+++.+.+ +.. ..
T Consensus 80 ~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~---~~~----~~ 152 (179)
T cd01890 80 FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVL---GLD----PS 152 (179)
T ss_pred hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHh---CCC----cc
Confidence 99999999999999999999999888888888887777899999999999997654443444443332 211 13
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
+++.+||++|. |+++|++.|.+.+|+|
T Consensus 153 ~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~ 179 (179)
T cd01890 153 EAILVSAKTGL----------GVEDLLEAIVERIPPP 179 (179)
T ss_pred cEEEeeccCCC----------CHHHHHHHHHhhCCCC
Confidence 48999999998 9999999999999876
No 101
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.89 E-value=4.8e-23 Score=212.41 Aligned_cols=190 Identities=32% Similarity=0.473 Sum_probs=149.3
Q ss_pred cceeeeecccCCcceehhhhhhccCcccc---ccccccccccchhhccccceEEeeeeeEEeec-----CeEEEEecCCC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRK---NQNINARIMDSNEIEKERGITIFSKNCSIEYN-----GTRINIIDTPG 282 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~---~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~-----~~~i~iiDTPG 282 (793)
|||+++||+|+|||||+++|+...+.... ......+++|....|+++|+|+......+.+. .+.+++|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 58999999999999999999998776643 22233567899999999999999888888764 37899999999
Q ss_pred cccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCC-----------CChhhhHhHHHH
Q psy1760 283 HADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN-----------ARPEWVVDATFD 351 (793)
Q Consensus 283 h~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~-----------a~~~~v~~~i~~ 351 (793)
|.+|...+.+++..+|++|+|+|+.++...++..+++.+...+.|.++|+||+|+.. .++.+.++++..
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~ 160 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNN 160 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888888888888899999999999852 123334455555
Q ss_pred HHhhhcccccccCcc----EEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 352 LFDKLCATEEQLDFP----VIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 352 ~~~~l~~~~~~l~~P----vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
.+..+....+..-+| +++.||+.+|+..- .. -.++-+|++.|.+.+|+|
T Consensus 161 ~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~-~~-~~~~~~~~~~~~~~~~~~ 213 (213)
T cd04167 161 IIASFSTTLSFLFSPENGNVCFASSKFGFCFTL-ES-FAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred HHHHhcCCCceEeccCCCeEEEEecCCCeEEec-HH-HHhhhhHHHHHHhhCCCC
Confidence 554444432222345 88999999996522 11 134569999999999987
No 102
>KOG2559|consensus
Probab=99.89 E-value=2.2e-23 Score=206.23 Aligned_cols=195 Identities=25% Similarity=0.279 Sum_probs=180.0
Q ss_pred CCCCcceEEEeeCCCCCChHHHHHHHHHHhc-------------------------------------------------
Q psy1760 5 SISPVSVVIPKYKPYGLSSNNALKKIKYLLN------------------------------------------------- 35 (793)
Q Consensus 5 ~~~~~~g~~~~~Kp~g~ts~~~v~~~~~~~~------------------------------------------------- 35 (793)
-+..+||+|+||||+|+.|..+.+.|-+.+.
T Consensus 5 ~i~kl~Gvl~VYKpsGik~khlr~~i~~~i~k~~~~~~~~s~~q~~~~~~g~~eg~e~~~~~~~~~sV~~~~nhPlv~g~ 84 (318)
T KOG2559|consen 5 DIWKLSGVLCVYKPSGIKSKHLRKLITRKIAKSVSDIESTSRIQLPLISIGVIEGHEKSLVVVGRNSVADYRNHPLVSGR 84 (318)
T ss_pred chhhhcceeEEecCCCccHHHHHHHHHHHHHhhhcccCCCcccccceEeecccccccceeeeecccchhhhccCCcccCc
Confidence 4567999999999999999998877755421
Q ss_pred ---cccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccCCCcceEeeccCCCCCCHHHHHHHHH
Q psy1760 36 ---AKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILI 112 (793)
Q Consensus 36 ---~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~d~~g~~~~~~~~~~~t~~~~~~al~ 112 (793)
..||+-...||-.|+|||++++|.+|++++ ++.+|.+|+.+-++|.+++...++|+|.+.++++|+
T Consensus 85 s~~~~~V~v~h~l~~~~sgvl~~gVghgc~~i~-----------~~mlg~aT~~~r~Dgri~~~~n~dhVs~~ri~~vla 153 (318)
T KOG2559|consen 85 SIRQEDVQVVHVLPLATSGVLLFGVGHGCESIP-----------ELMLGSATNVYRIDGRIKKSENIDHVSKHRIEKVLA 153 (318)
T ss_pred chhhcceeeEEeecccccceEEEecCcchhhhh-----------hhhhccchhccCccceEeeecccchhhHHHHHHHHH
Confidence 136788889999999999999999999998 566899999999999999999999999999999999
Q ss_pred HhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCCceeeEEeccchh--HHHHHHHHHhhhh
Q psy1760 113 NFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGT--YIRVLSEDIGKML 190 (793)
Q Consensus 113 ~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~~~~~~~~~s~gt--yIRsL~~dIg~~L 190 (793)
.++|..+...-+|+.+.++.+.||||||+|...+.-+-+..||.|+++.|..|.|.+++.|+..| |+|.|+++||..|
T Consensus 154 ~lq~shq~a~f~~~nvDl~tqEAyElA~RGl~Rp~~~s~~ivygI~l~~F~~P~F~le~qc~~Etqe~Lr~LVh~igl~L 233 (318)
T KOG2559|consen 154 RLQSSHQSASFRHANVDLETQEAYELARRGLPRPQLPSSQIVYGIDLNWFRSPKFSLETQCSGETQEMLRQLVHHIGLNL 233 (318)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHccCCCcCCCCCceEEEEeeeeecCCccEEEEeeccccHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999884 9999999999999
Q ss_pred ccchHHHHHHhhcccccccc
Q psy1760 191 GCGAHLKYLRRIGIDKLTLD 210 (793)
Q Consensus 191 ~~~a~l~~LRRt~~g~f~le 210 (793)
++.++...|||++.|.|..+
T Consensus 234 ~T~a~c~qlrr~r~g~F~~d 253 (318)
T KOG2559|consen 234 GTEATCIQLRRQRFGPFGSD 253 (318)
T ss_pred cceeeeeeeeeeccCCCCcc
Confidence 99999999999999999544
No 103
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.88 E-value=1.1e-21 Score=237.80 Aligned_cols=247 Identities=23% Similarity=0.175 Sum_probs=189.1
Q ss_pred cceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCe------------------EEEEecCCCcc
Q psy1760 223 KTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT------------------RINIIDTPGHA 284 (793)
Q Consensus 223 KSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~------------------~i~iiDTPGh~ 284 (793)
||||+++|.+..- ......|||.......+.++.. .++|||||||.
T Consensus 474 KTtLLD~iR~t~v----------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe 537 (1049)
T PRK14845 474 NTTLLDKIRKTRV----------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHE 537 (1049)
T ss_pred cccHHHHHhCCCc----------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcH
Confidence 9999999965421 2234578998888887776521 28999999999
Q ss_pred cchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCC-CCCh--------------hhhHhHH
Q psy1760 285 DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS-NARP--------------EWVVDAT 349 (793)
Q Consensus 285 df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~-~a~~--------------~~v~~~i 349 (793)
+|.....+.++.+|++++|+|+.+|+++||.+++..+...++|+|+|+||+|+. +++. +++.+++
T Consensus 538 ~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el 617 (1049)
T PRK14845 538 AFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTEL 617 (1049)
T ss_pred HHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHH
Confidence 999888888999999999999999999999999999999999999999999995 3321 2233333
Q ss_pred HHH-------Hhhhcccc--------cccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC-----cCcCCCCCC
Q psy1760 350 FDL-------FDKLCATE--------EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP-----VHKDNSNNP 409 (793)
Q Consensus 350 ~~~-------~~~l~~~~--------~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp-----~p~~~~~~p 409 (793)
.+. |...+... ..-.+|++++||++|. |+++|+++|....+ ....+.+.|
T Consensus 618 ~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGe----------GId~Ll~~l~~l~~~~l~~~L~~~~~~~ 687 (1049)
T PRK14845 618 EIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGE----------GIPELLMMVAGLAQKYLEERLKLNVEGY 687 (1049)
T ss_pred HHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCC----------CHHHHHHHHHHhhHHhhhhhhccCCCCc
Confidence 221 23333221 1235799999999998 99999998854332 133446789
Q ss_pred ceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEee--------cCceEEecccCCCcEEE
Q psy1760 410 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFK--------GLDRVLVNEALSGDIVL 481 (793)
Q Consensus 410 ~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~--------G~~~~~v~~a~aGdIv~ 481 (793)
+++.|..++.+++.|.++.|.|.+|+|++||.|.+.+. ++ ....||+.|.... +.+...+++|.|..-|-
T Consensus 688 ~~g~VlEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~-~~-~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vk 765 (1049)
T PRK14845 688 AKGTILEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGP-DD-VIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVK 765 (1049)
T ss_pred eEEEEEEEEEecCceeEEEEEEEcCEEecCCEEEEccC-CC-cceEEEEEecCcccccccccccccccccccccCCCceE
Confidence 99999999999999999999999999999999999876 33 3467888887432 11345778888877777
Q ss_pred Ee--ccceeecCCeEeCC
Q psy1760 482 IT--GIEEICIGSTICDP 497 (793)
Q Consensus 482 i~--gl~~i~iGdtl~~~ 497 (793)
|. |++++..||.+.-.
T Consensus 766 i~a~gl~~~~aG~~~~v~ 783 (1049)
T PRK14845 766 IAAPGLEEVLAGSPIRIV 783 (1049)
T ss_pred EecCCccccCCCCeEEEe
Confidence 74 88888888887543
No 104
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.88 E-value=1.7e-22 Score=204.64 Aligned_cols=173 Identities=28% Similarity=0.304 Sum_probs=139.6
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec--------------CeEEEE
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--------------GTRINI 277 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~--------------~~~i~i 277 (793)
||+++||+|+|||||+++|+...+ ...+|....++++|+|+......+.+. ++.+++
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~---------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 72 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIAS---------TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITL 72 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccc---------hhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEE
Confidence 799999999999999999986421 134577788999999999888888776 789999
Q ss_pred ecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCC-ChhhhHhHHHHHHhhh
Q psy1760 278 IDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-RPEWVVDATFDLFDKL 356 (793)
Q Consensus 278 iDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a-~~~~v~~~i~~~~~~l 356 (793)
||||||.+|...+.+++..+|++++|+|+.++...++.+.+..+...+.|+++|+||+|+... ..+...+++.+.+...
T Consensus 73 ~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~ 152 (192)
T cd01889 73 VDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT 152 (192)
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999888888889999999999999999888887777777778999999999999743 2334455555544322
Q ss_pred cccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCc
Q psy1760 357 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 403 (793)
Q Consensus 357 ~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 403 (793)
........+|++++||++|. |+++|++.|.+.+|+|.
T Consensus 153 ~~~~~~~~~~vi~iSa~~g~----------gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 153 LEKTRFKNSPIIPVSAKPGG----------GEAELGKDLNNLIVLPL 189 (192)
T ss_pred HHhcCcCCCCEEEEeccCCC----------CHHHHHHHHHhcccccc
Confidence 11111135789999999998 99999999999999874
No 105
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.88 E-value=1.5e-22 Score=207.29 Aligned_cols=166 Identities=31% Similarity=0.340 Sum_probs=134.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec-------------------
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN------------------- 271 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~------------------- 271 (793)
.||+++||.|+|||||+++|... .+|....|.++|+|+......+.|.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~-------------~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV-------------WTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDS 67 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-------------CCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccccc
Confidence 37999999999999999999532 1367778889999998887777764
Q ss_pred --------C------eEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCC-CCchhHHHHHHHHHcCC-ccEEEEecc
Q psy1760 272 --------G------TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQTRFVTRKALKLGF-KPIVVVNKI 335 (793)
Q Consensus 272 --------~------~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g-~~~qt~~~l~~~~~~~i-p~IvvINKi 335 (793)
+ +.++|||||||.+|..++.+++..+|++++|+|+.++ +..++..++..+...++ |+|+|+||+
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~ 147 (203)
T cd01888 68 PECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred ccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence 3 7899999999999999999999999999999999984 67889988888877777 468899999
Q ss_pred cCCCC-ChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCc
Q psy1760 336 DRSNA-RPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 403 (793)
Q Consensus 336 D~~~a-~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 403 (793)
|+... +.....+++++.+.... ...+|++++||++|. |++.|++.|.+.+|.|.
T Consensus 148 Dl~~~~~~~~~~~~i~~~~~~~~----~~~~~i~~vSA~~g~----------gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 148 DLVKEEQALENYEQIKKFVKGTI----AENAPIIPISAQLKY----------NIDVLLEYIVKKIPTPP 202 (203)
T ss_pred hccCHHHHHHHHHHHHHHHhccc----cCCCcEEEEeCCCCC----------CHHHHHHHHHHhCCCCC
Confidence 99752 23334455555443322 124689999999998 99999999999998875
No 106
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.87 E-value=1.3e-22 Score=222.54 Aligned_cols=234 Identities=24% Similarity=0.221 Sum_probs=189.3
Q ss_pred CCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCCceeeEEeccchhHHHH
Q psy1760 102 NSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRV 181 (793)
Q Consensus 102 ~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~~~~~~~~~s~gtyIRs 181 (793)
-|+.+.+.|++++.|.++|..-.|.. ..-...++.+..+||++++++......--..++.
T Consensus 137 ~te~a~r~A~~~l~G~ls~~i~~lr~--------------------~li~~~a~vEa~IDfpeedi~~~~~~~i~~~l~~ 196 (454)
T COG0486 137 KTEQAARIALRQLQGALSQLINELRE--------------------ALLELLAQVEANIDFPEEDIEELVLEKIREKLEE 196 (454)
T ss_pred CCHHHHHHHHHHcCCcHHHHHHHHHH--------------------HHHHHHHHheEeCCCCcccccchhHHHHHHHHHH
Confidence 37888999999999999999888877 4555566777789999886666555555677788
Q ss_pred HHHHHhhhhccchHHHHHHhhcccccccccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEE
Q psy1760 182 LSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITI 261 (793)
Q Consensus 182 L~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi 261 (793)
+...|.+.+.+....+.|| ..+ +++|+|.||+|||||+|+|+++ |...+...+|+|+
T Consensus 197 ~~~~l~~ll~~~~~g~ilr----~G~----kvvIiG~PNvGKSSLLNaL~~~---------------d~AIVTdI~GTTR 253 (454)
T COG0486 197 LIAELDELLATAKQGKILR----EGL----KVVIIGRPNVGKSSLLNALLGR---------------DRAIVTDIAGTTR 253 (454)
T ss_pred HHHHHHHHHHhhhhhhhhh----cCc----eEEEECCCCCcHHHHHHHHhcC---------------CceEecCCCCCcc
Confidence 8888888887766666666 344 8999999999999999999988 7888899999999
Q ss_pred eeeeeEEeecCeEEEEecCCCcccchHHHHHH--------hhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEe
Q psy1760 262 FSKNCSIEYNGTRINIIDTPGHADFGGEVERI--------LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 333 (793)
Q Consensus 262 ~~~~~~~~~~~~~i~iiDTPGh~df~~ev~~~--------l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvIN 333 (793)
+.....+..+|+++.|+||+|.++-...+|+. +..||.+++|+|++++...+....+. +...+.|+++|+|
T Consensus 254 Dviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~N 332 (454)
T COG0486 254 DVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLN 332 (454)
T ss_pred ceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEe
Confidence 99999999999999999999999888777764 78899999999999976666665555 5566789999999
Q ss_pred cccCCCCChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 334 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 334 KiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
|+|+......... ++ ....|++.+||++|. |++.|.++|.+.+..-
T Consensus 333 K~DL~~~~~~~~~--------~~-----~~~~~~i~iSa~t~~----------Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 333 KADLVSKIELESE--------KL-----ANGDAIISISAKTGE----------GLDALREAIKQLFGKG 378 (454)
T ss_pred chhcccccccchh--------hc-----cCCCceEEEEecCcc----------CHHHHHHHHHHHHhhc
Confidence 9999875321111 00 113478999999998 9999999998777654
No 107
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.86 E-value=1.1e-21 Score=203.61 Aligned_cols=178 Identities=22% Similarity=0.232 Sum_probs=139.3
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeee------------------------eE
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKN------------------------CS 267 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~------------------------~~ 267 (793)
+|+++||.++|||||+++|... .+..........++....|.++|+|+.... ..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~--~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 78 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQG--ELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEI 78 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhC--CcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCcccccccee
Confidence 3789999999999999999853 333222233456788888999999874333 12
Q ss_pred EeecCeEEEEecCCCcccchHHHHHHhh--ccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCC-Chhh
Q psy1760 268 IEYNGTRINIIDTPGHADFGGEVERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-RPEW 344 (793)
Q Consensus 268 ~~~~~~~i~iiDTPGh~df~~ev~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a-~~~~ 344 (793)
+..+++.++|+|||||.+|.+++.+++. .+|++++|+|+.+|+..+++.++..+...++|+++|+||+|+.+. +..+
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~ 158 (224)
T cd04165 79 CEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQE 158 (224)
T ss_pred eeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHH
Confidence 3445789999999999999999999886 799999999999999999999999999999999999999998653 3566
Q ss_pred hHhHHHHHHhhhccc-------------------ccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 345 VVDATFDLFDKLCAT-------------------EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 345 v~~~i~~~~~~l~~~-------------------~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
..+++.+.+...+.. ......|++.+||.+|. |++.|++.| ..+|++
T Consensus 159 ~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~----------Gi~~L~~~L-~~lp~~ 224 (224)
T cd04165 159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGE----------GLDLLHAFL-NLLPLR 224 (224)
T ss_pred HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCcc----------CHHHHHHHH-HhcCCC
Confidence 677777766532221 11123599999999998 998888776 777764
No 108
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.86 E-value=3.5e-21 Score=192.74 Aligned_cols=181 Identities=40% Similarity=0.565 Sum_probs=151.6
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+|+++|.+|+|||||+++|+..............+.++....+..+|+|+......+.+.+..++||||||+.+|.....
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999999886665554445556677788888899999888888899999999999999999999999
Q ss_pred HHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCC-CChhhhHhHHHHHHhhhccc-------cccc
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN-ARPEWVVDATFDLFDKLCAT-------EEQL 363 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~-a~~~~v~~~i~~~~~~l~~~-------~~~l 363 (793)
.+++.+|++++|+|+.++...+....+..+...+.|+++|+||+|+.. .+.....+++.+.+...+.. ....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGL 160 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCC
Confidence 999999999999999999888888888888888999999999999975 44555666676666554421 0123
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
..|++++||++|+ |++++++.|.+.+|+|
T Consensus 161 ~~~v~~~Sa~~g~----------gi~~l~~~l~~~l~~~ 189 (189)
T cd00881 161 LVPIVPGSALTGI----------GVEELLEAIVEHLPPP 189 (189)
T ss_pred cceEEEEecccCc----------CHHHHHHHHHhhCCCC
Confidence 5789999999998 9999999999999865
No 109
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.82 E-value=8.5e-20 Score=178.45 Aligned_cols=158 Identities=35% Similarity=0.402 Sum_probs=123.3
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec-CeEEEEecCCCcccchHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-GTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~-~~~i~iiDTPGh~df~~ev 290 (793)
+|+++|++|+|||||+++|.... .+....+..+++|+......+.+. +..+++|||||+.+|...+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~-------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 68 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE-------------TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNM 68 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc-------------cccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHH
Confidence 68999999999999999997531 022233455688888877777776 8899999999999998888
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCC-ccEEEEecccCCCCC-hhhhHhHHHHHHhhhcccccccCccEE
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF-KPIVVVNKIDRSNAR-PEWVVDATFDLFDKLCATEEQLDFPVI 368 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~i-p~IvvINKiD~~~a~-~~~v~~~i~~~~~~l~~~~~~l~~Pvi 368 (793)
...++.+|++++|+|+.++...++...+..+...+. |+++|+||+|+.... .....+++.+.+...+. ...|++
T Consensus 69 ~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 144 (164)
T cd04171 69 LAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFL----ADAPIF 144 (164)
T ss_pred HhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCc----CCCcEE
Confidence 888999999999999999888888887777766676 889999999997532 22334455554433211 246899
Q ss_pred EeecCCCCcccccccccCCchhhHHHHH
Q psy1760 369 YTSALHGYANENSKARQGNMIPLFEAIL 396 (793)
Q Consensus 369 ~~SA~~g~~~~~~~~~~~gi~~Ll~~I~ 396 (793)
++||++|. |++++++.+.
T Consensus 145 ~~Sa~~~~----------~v~~l~~~l~ 162 (164)
T cd04171 145 PVSAVTGE----------GIEELKEYLD 162 (164)
T ss_pred EEeCCCCc----------CHHHHHHHHh
Confidence 99999998 8999998874
No 110
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.82 E-value=2.6e-20 Score=161.59 Aligned_cols=78 Identities=22% Similarity=0.359 Sum_probs=74.4
Q ss_pred CeEEEEEEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhc-chHHHHcccccceEEEEeEecceEec
Q psy1760 605 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLI-GFQNEFITLTRGTGLISHVFEEYAPF 682 (793)
Q Consensus 605 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~-gy~~~l~s~T~G~g~~~~~f~~Y~~~ 682 (793)
|||++++|+||++|+|+||++|++|||++.+|+..++++++|+|.+|+|+++ ||+++|+++|+|+|+|+++|+||+|.
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCCCeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 8999999999999999999999999999999998554689999999999995 99999999999999999999999985
No 111
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.81 E-value=4.2e-20 Score=210.40 Aligned_cols=229 Identities=22% Similarity=0.205 Sum_probs=161.3
Q ss_pred CCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCCceeeEEeccchhHHHH
Q psy1760 102 NSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRV 181 (793)
Q Consensus 102 ~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~~~~~~~~~s~gtyIRs 181 (793)
-|+.+++.|++++.|.+.+..-.|.. ....+..+-+..+||++++......-.--..+..
T Consensus 135 ~t~~~~~~al~~l~G~l~~~~~~~r~--------------------~l~~~~a~iea~iDf~ee~~~~~~~~~i~~~i~~ 194 (449)
T PRK05291 135 KTEAAARLALRQLQGALSKLINELRE--------------------ELLELLALVEAAIDFPEEDIEFLSDEKILEKLEE 194 (449)
T ss_pred CCHHHHHHHHHhcCcHHHHHHHHHHH--------------------HHHHHHHHheEEccCCCCCcccccHHHHHHHHHH
Confidence 37889999999999999988888877 2333334445668998775432111112244555
Q ss_pred HHHHHhhhhccchHHHHHHhhcccccccccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEE
Q psy1760 182 LSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITI 261 (793)
Q Consensus 182 L~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi 261 (793)
+..+|.+.+......+.+ + .. .+|+++|++|+|||||+|+|++.. ........|+|.
T Consensus 195 l~~~l~~l~~~~~~~~~~---~-~~----~kV~ivG~~nvGKSSLln~L~~~~---------------~a~v~~~~gtT~ 251 (449)
T PRK05291 195 LIAELEALLASARQGEIL---R-EG----LKVVIAGRPNVGKSSLLNALLGEE---------------RAIVTDIAGTTR 251 (449)
T ss_pred HHHHHHHHHHHHHHHHHh---h-cC----CEEEEECCCCCCHHHHHHHHhCCC---------------CcccCCCCCccc
Confidence 555555544332222211 1 22 379999999999999999998652 222344578888
Q ss_pred eeeeeEEeecCeEEEEecCCCcccchHHHH--------HHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEe
Q psy1760 262 FSKNCSIEYNGTRINIIDTPGHADFGGEVE--------RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 333 (793)
Q Consensus 262 ~~~~~~~~~~~~~i~iiDTPGh~df~~ev~--------~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvIN 333 (793)
+.....+.+++.++++|||||+.++...++ ..+..+|++++|+|++++...+....|.. ..+.|+++|+|
T Consensus 252 d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~N 329 (449)
T PRK05291 252 DVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLN 329 (449)
T ss_pred ccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEE
Confidence 888888899999999999999987665433 34788999999999998766555555554 45789999999
Q ss_pred cccCCCCChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 334 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 334 KiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
|+|+....... .....+++++||++|. |++.|+++|.+.++.
T Consensus 330 K~DL~~~~~~~----------------~~~~~~~i~iSAktg~----------GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 330 KADLTGEIDLE----------------EENGKPVIRISAKTGE----------GIDELREAIKELAFG 371 (449)
T ss_pred hhhccccchhh----------------hccCCceEEEEeeCCC----------CHHHHHHHHHHHHhh
Confidence 99997532111 1123578999999998 999999999887753
No 112
>KOG2529|consensus
Probab=99.81 E-value=3.1e-20 Score=199.19 Aligned_cols=169 Identities=33% Similarity=0.489 Sum_probs=148.9
Q ss_pred cceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccCC
Q psy1760 9 VSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 88 (793)
Q Consensus 9 ~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~d 88 (793)
.+|+++||||++.+||++++|++++|...|+||.|||||.+||+|++|++++||++.-+....|+|++.+.+ |++.+
T Consensus 67 ~sgv~~i~kpa~pss~e~~swvk~iL~~ek~Gh~gTlDP~vtg~l~v~~~~~tr~~~s~~s~gk~yvg~~~l---t~~v~ 143 (395)
T KOG2529|consen 67 RSGVINIDKPANPSSHEVVSWVKNILRVEKTGHSGTLDPEVTGCLIVCIDRATRLLKSQQSAGKEYVGIGKL---TPEVE 143 (395)
T ss_pred hcCceeccCCCCCchHHHHHHHHHHhhHHHhCCCCCCCccccceEEEEeecccccccchhccCcEEEEEEec---Ccchh
Confidence 479999999999999999999999999999999999999999999999999999999999999999665544 33322
Q ss_pred CcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCC--c
Q psy1760 89 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIP--Y 166 (793)
Q Consensus 89 ~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~--~ 166 (793)
+...+.+++..+.|...|.||.-++ +.+..|.-.+|...+++++.+ .
T Consensus 144 --------------~~~k~~~~~e~l~g~l~~~~pl~~~-----------------~kr~~~v~~~y~s~~ie~d~~~~l 192 (395)
T KOG2529|consen 144 --------------DALKLHQKLEHLYGALFQRPPLISA-----------------VKRVLRVRTLYESKIIEYDRDYPL 192 (395)
T ss_pred --------------hhhhhccchhhhhhhhccCCchhhh-----------------ccceeEeechhhhhcccccccchh
Confidence 4567778888899999999999999 567777777888888988865 4
Q ss_pred eeeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccc
Q psy1760 167 LTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDK 211 (793)
Q Consensus 167 ~~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~ 211 (793)
..|.+.|..|||+|+++..++..|++++++..+||.+.+....+.
T Consensus 193 ~~f~~~~~~~t~~rt~~~~lg~ll~~g~k~~E~~r~r~~~~~E~~ 237 (395)
T KOG2529|consen 193 LRFGVSCEAGTYKRTMCVHLGLLLGFGGKMQELRRVRSGICSEED 237 (395)
T ss_pred ccccccccccchHHHHHHhhhhHhhhcchhhhhhhcccccccccc
Confidence 567789999999999999999999999999999999988776655
No 113
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.81 E-value=4.2e-20 Score=163.74 Aligned_cols=82 Identities=30% Similarity=0.499 Sum_probs=77.5
Q ss_pred eeeCeEEEEEEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEe
Q psy1760 602 ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAP 681 (793)
Q Consensus 602 ~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~ 681 (793)
++||||++++|.+|++|+|+|+++|++|||++.+++..+++++.|+|.+|+++++||+.+|+++|+|+|.|+++|+||+|
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~~ 80 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPIGGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYRP 80 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEESTTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhhhhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeEE
Confidence 58999999999999999999999999999999999986578999999999999999999999999999999999999999
Q ss_pred cc
Q psy1760 682 FY 683 (793)
Q Consensus 682 ~~ 683 (793)
++
T Consensus 81 ~~ 82 (89)
T PF00679_consen 81 VP 82 (89)
T ss_dssp ES
T ss_pred CC
Confidence 98
No 114
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.81 E-value=8.7e-20 Score=157.96 Aligned_cols=78 Identities=49% Similarity=0.941 Sum_probs=75.2
Q ss_pred CeEEEEEEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEec
Q psy1760 605 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPF 682 (793)
Q Consensus 605 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~ 682 (793)
|||++++|.||++|+|+||++|++|||++.+++..++++++|+|.+|+++++||+++|+++|+|+|+|+++|+||+|+
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 899999999999999999999999999999999855478999999999999999999999999999999999999996
No 115
>KOG0463|consensus
Probab=99.81 E-value=2.3e-19 Score=188.40 Aligned_cols=274 Identities=23% Similarity=0.305 Sum_probs=200.7
Q ss_pred cccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeee-------------------eEEe
Q psy1760 209 LDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKN-------------------CSIE 269 (793)
Q Consensus 209 le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~-------------------~~~~ 269 (793)
++.+++++|.+++|||||+..|... .+...-.....-+-....|.|.|.|-...+ ..++
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHg--eLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld 209 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHG--ELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD 209 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeec--ccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence 5678999999999999999988643 111111111122233444445454432222 2333
Q ss_pred ec------CeEEEEecCCCcccchHHHHHHh--hccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCC
Q psy1760 270 YN------GTRINIIDTPGHADFGGEVERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR 341 (793)
Q Consensus 270 ~~------~~~i~iiDTPGh~df~~ev~~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~ 341 (793)
|- -.-|+|||.+||+.|.+...-.+ .+.|...|+|-|+.|+-..|++|+.+|+.+.+|+++|++|||.+.++
T Consensus 210 WvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPAN 289 (641)
T KOG0463|consen 210 WVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPAN 289 (641)
T ss_pred ceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHH
Confidence 32 24689999999999887765544 46799999999999999999999999999999999999999998765
Q ss_pred -hhhhHhHHHHHHhhhccc-------------------ccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 342 -PEWVVDATFDLFDKLCAT-------------------EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 342 -~~~v~~~i~~~~~~l~~~-------------------~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
.++.+.-+..+++.-+.. ....-+|+|.+|..+|. |+ +||..+++.++.
T Consensus 290 iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~----------NL-~LLkmFLNlls~ 358 (641)
T KOG0463|consen 290 ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGT----------NL-PLLKMFLNLLSL 358 (641)
T ss_pred HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCC----------Ch-HHHHHHHhhcCc
Confidence 233444444444432221 01113789999999997 55 366666677765
Q ss_pred Cc-CCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEE
Q psy1760 402 HK-DNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV 480 (793)
Q Consensus 402 p~-~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv 480 (793)
.. ...+.|..++|.++++.+++|+++.|..++|+|+.+|.+.+.|...|......|++|+ .++.+|..+.+|+..
T Consensus 359 R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIH----RKRMpV~~VrcGQtA 434 (641)
T KOG0463|consen 359 RRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIH----RKRMPVGIVRCGQTA 434 (641)
T ss_pred ccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhh----hccccceEEeccchh
Confidence 43 3567899999999999999999999999999999999999988756766678889997 677899999999987
Q ss_pred EE--ecc--ceeecCCeEeCCCC
Q psy1760 481 LI--TGI--EEICIGSTICDPSK 499 (793)
Q Consensus 481 ~i--~gl--~~i~iGdtl~~~~~ 499 (793)
.+ .++ .+++.|.++.++.-
T Consensus 435 SFALKKIkr~~vRKGMVmVsp~l 457 (641)
T KOG0463|consen 435 SFALKKIKRKDVRKGMVMVSPKL 457 (641)
T ss_pred hhHhhhcchhhhhcceEEecCCC
Confidence 65 355 46888999987653
No 116
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.81 E-value=5.3e-20 Score=161.67 Aligned_cols=80 Identities=23% Similarity=0.386 Sum_probs=77.1
Q ss_pred eeCeEEEEEEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEec
Q psy1760 603 LYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPF 682 (793)
Q Consensus 603 llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~ 682 (793)
+||||++++|.||++|+|+|+++|++|||++.++++. +++++|+|.+|+++++||+++|+++|+|+|+|+++|+||+|+
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~-~~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~~ 79 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQR-GGAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEEV 79 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeecc-CCcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceEC
Confidence 5899999999999999999999999999999999974 568999999999999999999999999999999999999999
Q ss_pred c
Q psy1760 683 Y 683 (793)
Q Consensus 683 ~ 683 (793)
+
T Consensus 80 ~ 80 (85)
T smart00838 80 P 80 (85)
T ss_pred C
Confidence 8
No 117
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.80 E-value=8.9e-20 Score=157.55 Aligned_cols=78 Identities=28% Similarity=0.484 Sum_probs=75.2
Q ss_pred CeEEEEEEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEecc
Q psy1760 605 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 605 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
|||++++|+||++|+|+|+++|++|||++.+++.. +++++|+|.+|+++++||+++|+++|+|+|+|+++|+||+|++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~-~~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTG-EDEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEec-CCeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 89999999999999999999999999999999974 4789999999999999999999999999999999999999985
No 118
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.80 E-value=8.8e-20 Score=157.58 Aligned_cols=78 Identities=27% Similarity=0.461 Sum_probs=75.3
Q ss_pred CeEEEEEEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEecc
Q psy1760 605 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 605 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
|||++++|+||++|+|+|+++|++|||++.+++. .+++++|+|.+|+++++||+++|+++|+|+|+|+++|+||+|++
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~-~~~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQI-KGDEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEe-cCCEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEECC
Confidence 8999999999999999999999999999999998 45799999999999999999999999999999999999999985
No 119
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=1.7e-18 Score=189.96 Aligned_cols=218 Identities=24% Similarity=0.289 Sum_probs=156.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccch---
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG--- 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~--- 287 (793)
..|+|+|.||+|||||.|+|+++ ..+.++..+|+|++......+|.++.+.+|||+|..+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~---------------r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~ 68 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGR---------------RIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDE 68 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC---------------eeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchH
Confidence 35899999999999999999987 334567788999999999999999999999999987433
Q ss_pred ------HHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccc
Q psy1760 288 ------GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 361 (793)
Q Consensus 288 ------~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~ 361 (793)
..++.++..||++|||||+.+|++++...+.+.++..+.|+|+|+||+|-... +.. ...|-.++..
T Consensus 69 l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~--e~~----~~efyslG~g-- 140 (444)
T COG1160 69 LQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA--EEL----AYEFYSLGFG-- 140 (444)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh--hhh----HHHHHhcCCC--
Confidence 23456789999999999999999999999999999888999999999997632 111 2223345543
Q ss_pred ccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCC--CC---CCceEEEEEEeeeCCCceEEEEEEeeccc
Q psy1760 362 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN--SN---NPLQLQIISLEYSSYLGKIGIGRILSGRI 436 (793)
Q Consensus 362 ~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~--~~---~p~~~~V~~~~~~~~~G~v~~grV~sG~l 436 (793)
.++++||.+|. |+.+|+|++++.+| +... .+ .|.++.|. -.|.+|+=+++.-+-
T Consensus 141 ----~~~~ISA~Hg~----------Gi~dLld~v~~~l~-~~e~~~~~~~~~~ikiaii---GrPNvGKSsLiN~il--- 199 (444)
T COG1160 141 ----EPVPISAEHGR----------GIGDLLDAVLELLP-PDEEEEEEEETDPIKIAII---GRPNVGKSSLINAIL--- 199 (444)
T ss_pred ----CceEeehhhcc----------CHHHHHHHHHhhcC-CcccccccccCCceEEEEE---eCCCCCchHHHHHhc---
Confidence 37899999998 99999999999997 4321 11 23433332 223334333322221
Q ss_pred ccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccC
Q psy1760 437 KSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEAL 475 (793)
Q Consensus 437 k~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~ 475 (793)
.-+.+.+.+. .|. ...-|..-+.+.|.+..-++.|.
T Consensus 200 -geeR~Iv~~~-aGT-TRD~I~~~~e~~~~~~~liDTAG 235 (444)
T COG1160 200 -GEERVIVSDI-AGT-TRDSIDIEFERDGRKYVLIDTAG 235 (444)
T ss_pred -cCceEEecCC-CCc-cccceeeeEEECCeEEEEEECCC
Confidence 2233444433 453 23456666667777666666654
No 120
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.79 E-value=4.3e-19 Score=201.09 Aligned_cols=225 Identities=20% Similarity=0.196 Sum_probs=158.4
Q ss_pred CCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCCceeeEEeccchhHHHH
Q psy1760 102 NSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRV 181 (793)
Q Consensus 102 ~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~~~~~~~~~s~gtyIRs 181 (793)
-|+.+++.|+.++.|.+++..-.|.. ....+..+.+..+||++++... ..-...+..
T Consensus 127 ~t~~~~~~A~~~l~G~ls~~~~~~r~--------------------~l~~~~a~iea~iDf~ee~~~~---~~~~~~l~~ 183 (442)
T TIGR00450 127 PNNKVKDIALNKLAGELDQKIEAIRK--------------------SLLQLLAQVEVNIDYEEDDDEQ---DSLNQLLLS 183 (442)
T ss_pred CCHHHHHHHHHhcCcHHHHHHHHHHH--------------------HHHHHHHHeeEECCcCCCCccH---HHHHHHHHH
Confidence 37888999999999999988887777 4455555666779998875322 123344555
Q ss_pred HHHHHhhhhccchHHHHHHhhcccccccccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEE
Q psy1760 182 LSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITI 261 (793)
Q Consensus 182 L~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi 261 (793)
+..+|...+... ....++ .. .+|+++|++|+|||||+|+|++.. ...+....|+|+
T Consensus 184 ~~~~l~~ll~~~-~~~~~~----~g----~kVvIvG~~nvGKSSLiN~L~~~~---------------~aivs~~pgtTr 239 (442)
T TIGR00450 184 IIAELKDILNSY-KLEKLD----DG----FKLAIVGSPNVGKSSLLNALLKQD---------------RAIVSDIKGTTR 239 (442)
T ss_pred HHHHHHHHHHHH-HHHHhh----cC----CEEEEECCCCCcHHHHHHHHhCCC---------------CcccCCCCCcEE
Confidence 566666655443 212221 22 379999999999999999998652 222344578899
Q ss_pred eeeeeEEeecCeEEEEecCCCcccchHHHH--------HHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEe
Q psy1760 262 FSKNCSIEYNGTRINIIDTPGHADFGGEVE--------RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 333 (793)
Q Consensus 262 ~~~~~~~~~~~~~i~iiDTPGh~df~~ev~--------~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvIN 333 (793)
+.....+.+++..+++|||||+.++...++ ..++.+|++|+|+|++++...+.. ++..+...+.|+|+|+|
T Consensus 240 d~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~N 318 (442)
T TIGR00450 240 DVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLN 318 (442)
T ss_pred EEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEE
Confidence 888888999999999999999977655432 357889999999999887654444 55666666889999999
Q ss_pred cccCCCCChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 334 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 334 KiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
|+|+...+. ++ +. .....|++.+||+++ |++.+++.|.+.+
T Consensus 319 K~Dl~~~~~----~~---~~-------~~~~~~~~~vSak~~-----------gI~~~~~~L~~~i 359 (442)
T TIGR00450 319 KIDLKINSL----EF---FV-------SSKVLNSSNLSAKQL-----------KIKALVDLLTQKI 359 (442)
T ss_pred CccCCCcch----hh---hh-------hhcCCceEEEEEecC-----------CHHHHHHHHHHHH
Confidence 999964311 11 11 112357899999973 6666776665544
No 121
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.78 E-value=2.2e-18 Score=169.42 Aligned_cols=161 Identities=34% Similarity=0.399 Sum_probs=122.2
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec---CeEEEEecCCCcccchH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---GTRINIIDTPGHADFGG 288 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~---~~~i~iiDTPGh~df~~ 288 (793)
.|+++|++|+|||||+++|...... ....+++|.......+.++ +..+++|||||+.+|..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 65 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVA----------------AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN 65 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccc----------------cccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHH
Confidence 4899999999999999999754211 1123456666555666664 78999999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEE
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVI 368 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi 368 (793)
.....+..+|++++|+|++++...++...+..+...++|+++|+||+|+...+.+.+.+++.+..... .......+|++
T Consensus 66 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 144 (168)
T cd01887 66 MRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQG-EDEWGGDVQIV 144 (168)
T ss_pred HHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccc-cccccCcCcEE
Confidence 88888999999999999999888888888888888999999999999997654444444433322111 00111247899
Q ss_pred EeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 369 YTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 369 ~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
++||++|. |+++|+++|.++.
T Consensus 145 ~~Sa~~~~----------gi~~l~~~l~~~~ 165 (168)
T cd01887 145 PTSAKTGE----------GIDDLLEAILLLA 165 (168)
T ss_pred EeecccCC----------CHHHHHHHHHHhh
Confidence 99999998 9999999997654
No 122
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.78 E-value=5.1e-19 Score=153.61 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=74.7
Q ss_pred CeEEEEEEEeCCcchHHHHHHhhccCceeeeeeecc-CCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEecc
Q psy1760 605 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINE-KERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 605 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~-~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
|||++++|.+|++|+|+|+++|++|||++.+++..+ +++++|+|.+|+++++||.++|+++|+|+|+|+++|+||+|++
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 899999999999999999999999999999999753 3469999999999999999999999999999999999999974
No 123
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.77 E-value=6e-19 Score=152.96 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=74.2
Q ss_pred CeEEEEEEEeCCcchHHHHHHhhccCceeeeeeeccCCe-EEEEEEechhhhcchHHHHcccccceEEEEeEecceEecc
Q psy1760 605 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKER-VRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 605 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~-~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
|||++++|.||++++|+|+++|++|||++++++..++++ .+|++++|+++++||.++|+++|+|+|.|+++|+||+|++
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 899999999999999999999999999999998754333 8999999999999999999999999999999999999974
No 124
>KOG1143|consensus
Probab=99.77 E-value=9e-18 Score=176.53 Aligned_cols=289 Identities=18% Similarity=0.214 Sum_probs=211.9
Q ss_pred cccccccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec-------------
Q psy1760 205 DKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN------------- 271 (793)
Q Consensus 205 g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~------------- 271 (793)
.+-.+|-+++++|..++|||||+..|.... +.........-+-....|...|.|-..++..+-++
T Consensus 162 ~QqfievRvAVlGg~D~GKSTLlGVLTQge--LDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t 239 (591)
T KOG1143|consen 162 SQQFIEVRVAVLGGCDVGKSTLLGVLTQGE--LDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT 239 (591)
T ss_pred cccceEEEEEEecCcccCcceeeeeeeccc--ccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence 344577889999999999999999986432 11110001111223344555555543333222221
Q ss_pred --------CeEEEEecCCCcccchHHHHHHhhc--cCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCC-
Q psy1760 272 --------GTRINIIDTPGHADFGGEVERILSM--VDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA- 340 (793)
Q Consensus 272 --------~~~i~iiDTPGh~df~~ev~~~l~~--aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a- 340 (793)
..-++|||.+||+.|......++.. .|.++|||+|..|+...|++|+-.+..+++|++|+++|+|+.+.
T Consensus 240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccch
Confidence 3469999999999998887777654 69999999999999999999999999999999999999999764
Q ss_pred ChhhhHhHHHHHHhhhccccc-------------------ccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 341 RPEWVVDATFDLFDKLCATEE-------------------QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 341 ~~~~v~~~i~~~~~~l~~~~~-------------------~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
..+..+.++..++...+.... ..-.|++.+|..+|. |++ |+..+++.+++
T Consensus 320 ~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGe----------gl~-ll~~fLn~Lsp 388 (591)
T KOG1143|consen 320 GLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGE----------GLR-LLRTFLNCLSP 388 (591)
T ss_pred hHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCcc----------chh-HHHHHHhhcCC
Confidence 356778888888766443210 012799999999997 554 55555566665
Q ss_pred CcCC------CCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccC
Q psy1760 402 HKDN------SNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEAL 475 (793)
Q Consensus 402 p~~~------~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~ 475 (793)
.... ...|.-++|..++..|.+|.++-|.+-+|.++.|+.+.+.|..||...+.+|.+|+ .++.++-.+.
T Consensus 389 ~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~----Rnr~acrvvr 464 (591)
T KOG1143|consen 389 AGTAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIR----RNRQACRVVR 464 (591)
T ss_pred cCChHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeee----ccccceeeec
Confidence 4321 23577789999999999999999999999999999999999878888889999998 4567888899
Q ss_pred CCcEEEEe-ccc---eeecCCeEeCCCCCCCCCCCccCCCceEEEEEec
Q psy1760 476 SGDIVLIT-GIE---EICIGSTICDPSKPNGLPMLNIDEPTLTINFMVN 520 (793)
Q Consensus 476 aGdIv~i~-gl~---~i~iGdtl~~~~~~~~l~~~~~~~P~~~~~~~~~ 520 (793)
||+-..++ +.. .++.|.++...+.. |.+...|.+|
T Consensus 465 aGqaAslsl~d~D~~~LR~GMVl~~~~~n----------P~~c~~F~A~ 503 (591)
T KOG1143|consen 465 AGQAASLSLNDPDGVSLRRGMVLAEIDHN----------PPVCYEFTAN 503 (591)
T ss_pred CccceeeeccCCCccchhcceEEeecCCC----------CceEEEEeee
Confidence 99988875 222 35779998765433 4455566554
No 125
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.77 E-value=6.8e-19 Score=152.07 Aligned_cols=78 Identities=22% Similarity=0.380 Sum_probs=75.1
Q ss_pred CeEEEEEEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEecc
Q psy1760 605 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 605 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
|||++++|.+|++|+|+||++|++|||++.+++.. ++++.|+|.+|+++++||.++|+++|+|+|+++++|+||++++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~-~~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESR-GGWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceecc-CCcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 89999999999999999999999999999999984 5689999999999999999999999999999999999999974
No 126
>KOG0466|consensus
Probab=99.77 E-value=9e-19 Score=179.89 Aligned_cols=257 Identities=25% Similarity=0.284 Sum_probs=191.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec-------------------
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN------------------- 271 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~------------------- 271 (793)
.||+-+||+.|||||++.++.+-.. -....|-||.|||....+...+-
T Consensus 39 iNIGTIGHVAHGKSTvVkAiSGv~T-------------vrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~ 105 (466)
T KOG0466|consen 39 INIGTIGHVAHGKSTVVKAISGVHT-------------VRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSS 105 (466)
T ss_pred eeecceeccccCcceeeeeeccceE-------------EEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCC
Confidence 5899999999999999999954311 11233556677776544432210
Q ss_pred ------------------CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCC-CCchhHHHHHHHHHcCCcc-EEE
Q psy1760 272 ------------------GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQTRFVTRKALKLGFKP-IVV 331 (793)
Q Consensus 272 ------------------~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g-~~~qt~~~l~~~~~~~ip~-Ivv 331 (793)
-+.+.|+|+|||.-....|..+....|+++|++.+++. ++|||.+|+....-+.++. |++
T Consensus 106 k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhiiil 185 (466)
T KOG0466|consen 106 KEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIIL 185 (466)
T ss_pred CCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEE
Confidence 13688999999988888899999999999999999876 7999999999998888887 556
Q ss_pred EecccCCCCC-hhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCc
Q psy1760 332 VNKIDRSNAR-PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPL 410 (793)
Q Consensus 332 INKiD~~~a~-~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~ 410 (793)
-||+|+.... ..+..+++..++..-.+. +.|++++||.-.+ |++.+.+.|++.+|-|.+|-..|.
T Consensus 186 QNKiDli~e~~A~eq~e~I~kFi~~t~ae----~aPiiPisAQlky----------NId~v~eyivkkIPvPvRdf~s~p 251 (466)
T KOG0466|consen 186 QNKIDLIKESQALEQHEQIQKFIQGTVAE----GAPIIPISAQLKY----------NIDVVCEYIVKKIPVPVRDFTSPP 251 (466)
T ss_pred echhhhhhHHHHHHHHHHHHHHHhccccC----CCceeeehhhhcc----------ChHHHHHHHHhcCCCCccccCCCC
Confidence 7999997642 233444555554433332 5799999999988 999999999999999999999999
Q ss_pred eEEEEEEee--------eCCCceEEEEEEeecccccCCEEEEecCC-----CCCC----CceeEeEEEEeecCceEEecc
Q psy1760 411 QLQIISLEY--------SSYLGKIGIGRILSGRIKSLQDVVIMNGP-----DDKP----NKAKINQIRVFKGLDRVLVNE 473 (793)
Q Consensus 411 ~~~V~~~~~--------~~~~G~v~~grV~sG~lk~G~~v~~~~~~-----~g~~----~~~kV~~i~~~~G~~~~~v~~ 473 (793)
+|.|...+. ++..|-++-|.+..|.|++||.+.+.|.- +|+. ...+|.++| .++.+.+.
T Consensus 252 rlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~----AE~n~L~~ 327 (466)
T KOG0466|consen 252 RLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLF----AEQNDLQF 327 (466)
T ss_pred cEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHH----hhhcccee
Confidence 998887653 34568899999999999999999987642 2321 123566666 46688999
Q ss_pred cCCCcEEEE-eccce------eecCCeEeCCC
Q psy1760 474 ALSGDIVLI-TGIEE------ICIGSTICDPS 498 (793)
Q Consensus 474 a~aGdIv~i-~gl~~------i~iGdtl~~~~ 498 (793)
|.+|-.+++ +.++- --+|.++...+
T Consensus 328 AvPGGLIGVGT~~DPtlcraDrlVGqVlG~~G 359 (466)
T KOG0466|consen 328 AVPGGLIGVGTKMDPTLCRADRLVGQVLGAVG 359 (466)
T ss_pred ecCCceeeeccccCcchhhhhHHHHHHHhhcc
Confidence 999999888 34432 23466665544
No 127
>COG1159 Era GTPase [General function prediction only]
Probab=99.77 E-value=2.8e-18 Score=178.98 Aligned_cols=159 Identities=29% Similarity=0.366 Sum_probs=125.8
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCccc------
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD------ 285 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d------ 285 (793)
-|+|+|.||+|||||+|+|+++ ....+++...+|+.....-+..++..+.|+||||...
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~---------------KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~ 72 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQ---------------KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALG 72 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcC---------------ceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHH
Confidence 4799999999999999999988 3444566677888877777888899999999999532
Q ss_pred --chHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 286 --FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 286 --f~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
....+..++..+|+++||||+.++..+..+.+++.++..+.|+|+++||+|+...+ ..+.++.+.+......
T Consensus 73 ~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~--~~l~~~~~~~~~~~~f---- 146 (298)
T COG1159 73 ELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPK--TVLLKLIAFLKKLLPF---- 146 (298)
T ss_pred HHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcH--HHHHHHHHHHHhhCCc----
Confidence 23445566889999999999999999999999999988778999999999987643 2123333333322221
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
..++++||++|. |++.|++.+..++|..
T Consensus 147 -~~ivpiSA~~g~----------n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 147 -KEIVPISALKGD----------NVDTLLEIIKEYLPEG 174 (298)
T ss_pred -ceEEEeeccccC----------CHHHHHHHHHHhCCCC
Confidence 158999999998 9999999999999864
No 128
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.76 E-value=2.9e-18 Score=188.08 Aligned_cols=190 Identities=27% Similarity=0.295 Sum_probs=142.7
Q ss_pred EeccchhHHHHHHHHHhhhhccchHHHHHHhhcccccccccceeeeecccCCcceehhhhhhccCccccccccccccccc
Q psy1760 171 IHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDS 250 (793)
Q Consensus 171 ~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~ 250 (793)
+..+-|.=+..|...+-+.+. ... +....+. .....|+|+|.||+|||||+|+|+++ +.
T Consensus 145 ISA~Hg~Gi~dLld~v~~~l~-~~e----~~~~~~~-~~~ikiaiiGrPNvGKSsLiN~ilge---------------eR 203 (444)
T COG1160 145 ISAEHGRGIGDLLDAVLELLP-PDE----EEEEEEE-TDPIKIAIIGRPNVGKSSLINAILGE---------------ER 203 (444)
T ss_pred eehhhccCHHHHHHHHHhhcC-Ccc----ccccccc-CCceEEEEEeCCCCCchHHHHHhccC---------------ce
Confidence 445555556666666655542 110 0000010 11147999999999999999999988 56
Q ss_pred hhhccccceEEeeeeeEEeecCeEEEEecCCCccc----------c-hHHHHHHhhccCcEEEEEeCCCCCCchhHHHHH
Q psy1760 251 NEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD----------F-GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTR 319 (793)
Q Consensus 251 ~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d----------f-~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~ 319 (793)
..+....|+|+++....++|++.++.+|||+|.+. | ......++..||.+++|+||.+|+..|......
T Consensus 204 ~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~ 283 (444)
T COG1160 204 VIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAG 283 (444)
T ss_pred EEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHH
Confidence 66788899999999999999999999999999753 1 123456788999999999999999999999999
Q ss_pred HHHHcCCccEEEEecccCCCC---ChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHH
Q psy1760 320 KALKLGFKPIVVVNKIDRSNA---RPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAIL 396 (793)
Q Consensus 320 ~~~~~~ip~IvvINKiD~~~a---~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~ 396 (793)
++.+.|.+.++|+||.|+... ..++...++...|..++. .|++++||++|. ++..|++++.
T Consensus 284 ~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~------a~i~~iSA~~~~----------~i~~l~~~i~ 347 (444)
T COG1160 284 LIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDF------APIVFISALTGQ----------GLDKLFEAIK 347 (444)
T ss_pred HHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccC------CeEEEEEecCCC----------ChHHHHHHHH
Confidence 999999999999999998653 234444455554443333 489999999998 7777777765
Q ss_pred h
Q psy1760 397 K 397 (793)
Q Consensus 397 ~ 397 (793)
.
T Consensus 348 ~ 348 (444)
T COG1160 348 E 348 (444)
T ss_pred H
Confidence 4
No 129
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.75 E-value=2.6e-18 Score=148.82 Aligned_cols=79 Identities=25% Similarity=0.467 Sum_probs=75.7
Q ss_pred CeEEEEEEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEecc
Q psy1760 605 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 605 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
|||++++|.+|++|.|+|+++|++|||++.+++..++++++|+|.+|+++++||+++|+++|+|+|+|++.|+||++++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecCCCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 8999999999999999999999999999999998554799999999999999999999999999999999999999974
No 130
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=1.1e-17 Score=162.01 Aligned_cols=149 Identities=28% Similarity=0.324 Sum_probs=114.2
Q ss_pred eeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH-----
Q psy1760 214 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG----- 288 (793)
Q Consensus 214 aIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~----- 288 (793)
+++|++|+|||||+++|+..... ..+...++|.........++++.+.+|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 65 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA---------------IVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKE 65 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE---------------eecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHH
Confidence 57899999999999999865211 1223346677666777788899999999999988654
Q ss_pred ---HHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 289 ---EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 289 ---ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
.....++.+|++++|+|+.++.......+++.+...+.|+++|+||+|+...+.. ...+..++. .
T Consensus 66 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~------~~~~~~~~~------~ 133 (157)
T cd01894 66 IREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE------AAEFYSLGF------G 133 (157)
T ss_pred HHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH------HHHHHhcCC------C
Confidence 4456788999999999999887777777888888889999999999999764321 112222221 2
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
+++++||++|. |++.+++.|.+++
T Consensus 134 ~~~~~Sa~~~~----------gv~~l~~~l~~~~ 157 (157)
T cd01894 134 EPIPISAEHGR----------GIGDLLDAILELL 157 (157)
T ss_pred CeEEEecccCC----------CHHHHHHHHHhhC
Confidence 58999999998 9999999987653
No 131
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.74 E-value=2.5e-18 Score=167.15 Aligned_cols=146 Identities=26% Similarity=0.409 Sum_probs=107.9
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH---
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG--- 288 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~--- 288 (793)
.|+++|.||+|||||+|+|++.. ......+|+|+......+.+++..+.|+||||.-++..
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~----------------~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ 65 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK----------------QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSE 65 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS----------------EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSH
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----------------ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCc
Confidence 58999999999999999998763 12344579999999999999999999999999644321
Q ss_pred -H-H-HHHh--hccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhh-hHhHHHHHHhhhcccccc
Q psy1760 289 -E-V-ERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEW-VVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 289 -e-v-~~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~-v~~~i~~~~~~l~~~~~~ 362 (793)
+ + ..++ ...|++++|+||+. ..+..++..++.+.|+|+++|+||+|....+-.. -.+.+.+ .
T Consensus 66 ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~----------~ 133 (156)
T PF02421_consen 66 EERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSE----------R 133 (156)
T ss_dssp HHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHH----------H
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHH----------H
Confidence 1 1 2223 57899999999987 4566778888889999999999999986432111 1222222 2
Q ss_pred cCccEEEeecCCCCcccccccccCCchhhHHHH
Q psy1760 363 LDFPVIYTSALHGYANENSKARQGNMIPLFEAI 395 (793)
Q Consensus 363 l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I 395 (793)
+.+||+++||+++. |+++|+++|
T Consensus 134 Lg~pvi~~sa~~~~----------g~~~L~~~I 156 (156)
T PF02421_consen 134 LGVPVIPVSARTGE----------GIDELKDAI 156 (156)
T ss_dssp HTS-EEEEBTTTTB----------THHHHHHHH
T ss_pred hCCCEEEEEeCCCc----------CHHHHHhhC
Confidence 36899999999998 999999875
No 132
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.74 E-value=1.3e-17 Score=189.93 Aligned_cols=193 Identities=27% Similarity=0.272 Sum_probs=139.4
Q ss_pred eEEeccchhHHHHHHHHHhhhhccchHHHHHHhhcccccccccceeeeecccCCcceehhhhhhccCccccccccccccc
Q psy1760 169 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIM 248 (793)
Q Consensus 169 ~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~ 248 (793)
+.+.+..|.-+..+...+.+.+....... ... .-..+++++|++|+|||||+++|++..
T Consensus 138 ~~vSa~~g~gv~~ll~~i~~~l~~~~~~~-----~~~--~~~~~v~ivG~~~~GKSsLin~l~~~~-------------- 196 (429)
T TIGR03594 138 IPISAEHGRGIGDLLDAILELLPEEEEEE-----EEE--DGPIKIAIIGRPNVGKSTLVNALLGEE-------------- 196 (429)
T ss_pred EEEeCCcCCChHHHHHHHHHhcCcccccc-----ccc--CCceEEEEECCCCCCHHHHHHHHHCCC--------------
Confidence 45666677777777777766553211000 000 011479999999999999999998652
Q ss_pred cchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH-----------HHHHhhccCcEEEEEeCCCCCCchhHHH
Q psy1760 249 DSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE-----------VERILSMVDNVLLLIDAVEGPMPQTRFV 317 (793)
Q Consensus 249 D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e-----------v~~~l~~aD~allVVDa~~g~~~qt~~~ 317 (793)
.......+|+|++.....+.+++..+.+|||||+.++... ..++++.+|++|+|+|+.++...++..+
T Consensus 197 -~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~ 275 (429)
T TIGR03594 197 -RVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRI 275 (429)
T ss_pred -eeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHH
Confidence 2233456789998888888899999999999998665321 2346889999999999999999999999
Q ss_pred HHHHHHcCCccEEEEecccCCCC--ChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHH
Q psy1760 318 TRKALKLGFKPIVVVNKIDRSNA--RPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAI 395 (793)
Q Consensus 318 l~~~~~~~ip~IvvINKiD~~~a--~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I 395 (793)
+..+...+.|+|+|+||+|+... ..+++.+++.+.+..+ ..+|++++||++|+ |++++++.+
T Consensus 276 ~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~------~~~~vi~~SA~~g~----------~v~~l~~~i 339 (429)
T TIGR03594 276 AGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFL------DFAPIVFISALTGQ----------GVDKLLDAI 339 (429)
T ss_pred HHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccC------CCCceEEEeCCCCC----------CHHHHHHHH
Confidence 99999999999999999999721 1222333333322211 13689999999998 888888888
Q ss_pred Hhhc
Q psy1760 396 LKYV 399 (793)
Q Consensus 396 ~~~l 399 (793)
.+..
T Consensus 340 ~~~~ 343 (429)
T TIGR03594 340 DEVY 343 (429)
T ss_pred HHHH
Confidence 6644
No 133
>KOG1144|consensus
Probab=99.74 E-value=4.5e-18 Score=191.13 Aligned_cols=222 Identities=22% Similarity=0.201 Sum_probs=160.9
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec------------------Ce
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN------------------GT 273 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~------------------~~ 273 (793)
-++|+||++.|||-|++.+-...- ......|||-....+.|... --
T Consensus 477 IcCilGHVDTGKTKlld~ir~tNV----------------qegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvP 540 (1064)
T KOG1144|consen 477 ICCILGHVDTGKTKLLDKIRGTNV----------------QEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVP 540 (1064)
T ss_pred eEEEeecccccchHHHHHhhcccc----------------ccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCC
Confidence 368999999999999999964311 11122345544444443322 12
Q ss_pred EEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCC-------CChh---
Q psy1760 274 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN-------ARPE--- 343 (793)
Q Consensus 274 ~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~-------a~~~--- 343 (793)
.+.+||||||..|.....|+.+.||.+|||||..+|+.+||.+-+.+++..+.|+||++||+|+.- +...
T Consensus 541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~l 620 (1064)
T KOG1144|consen 541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEAL 620 (1064)
T ss_pred eeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999852 1111
Q ss_pred -----hhHhHHHHHHh-------hhccc--------ccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCc
Q psy1760 344 -----WVVDATFDLFD-------KLCAT--------EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 403 (793)
Q Consensus 344 -----~v~~~i~~~~~-------~l~~~--------~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 403 (793)
.+.++....+. ..+.+ +...-+.++++||.+|. |+.+|+-.|++..+...
T Consensus 621 kkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGe----------GipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 621 KKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGE----------GIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCC----------CcHHHHHHHHHHHHHHH
Confidence 12222222222 11111 11112678999999998 99999999887654432
Q ss_pred C---CCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEE
Q psy1760 404 D---NSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIR 461 (793)
Q Consensus 404 ~---~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~ 461 (793)
. .....+++.|..+...++.|+..-.-+.+|.|+.||+|.+++. +|. ....|..|.
T Consensus 691 ~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~-~Gp-IvTtIRaLL 749 (1064)
T KOG1144|consen 691 VEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGL-QGP-IVTTIRALL 749 (1064)
T ss_pred HHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCC-CCc-hhHHHHHhc
Confidence 1 2345688899999999999998888999999999999999987 663 333344443
No 134
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.74 E-value=2.1e-17 Score=176.71 Aligned_cols=156 Identities=24% Similarity=0.196 Sum_probs=112.9
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccc-----
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF----- 286 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df----- 286 (793)
.|+++|++|+|||||+|+|++... .......++|..........++.++.|+||||+.+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~---------------~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~ 66 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKI---------------SITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLN 66 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcE---------------eecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHH
Confidence 479999999999999999987622 123334556665444444556778999999997543
Q ss_pred ---hHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 287 ---GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 287 ---~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
...+..++..+|++++|+|+++....+ ..++..+...+.|.++|+||+|+.. .....+.+.++....
T Consensus 67 ~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~~~------- 136 (270)
T TIGR00436 67 RLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKF--KDKLLPLIDKYAILE------- 136 (270)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCC--HHHHHHHHHHHHhhc-------
Confidence 223455688999999999999865544 5666777778899999999999963 233333333222111
Q ss_pred Cc-cEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 364 DF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 364 ~~-Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
.+ +++++||++|. |++.|++.|.+.+|+.
T Consensus 137 ~~~~v~~iSA~~g~----------gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 137 DFKDIVPISALTGD----------NTSFLAAFIEVHLPEG 166 (270)
T ss_pred CCCceEEEecCCCC----------CHHHHHHHHHHhCCCC
Confidence 22 79999999998 9999999999998764
No 135
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.73 E-value=9.9e-18 Score=164.95 Aligned_cols=161 Identities=19% Similarity=0.250 Sum_probs=111.1
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
||+++|++|+|||||+++|......... ........|+......+.+++..+++|||||+.+|...+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~------------~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKG------------LPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccC------------CcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHH
Confidence 6899999999999999999764321000 0011122344444456777899999999999999999889
Q ss_pred HHhhccCcEEEEEeCCCCC-CchhHHHHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 292 RILSMVDNVLLLIDAVEGP-MPQTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
..++.+|++++|+|+.+.. .......+..+. ..++|+++++||+|+..+. ..+++.+.+...........+|
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL---SVEEIKEVFQDKAEEIGRRDCL 145 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC---CHHHHHHHhccccccccCCceE
Confidence 9999999999999998642 112222333332 2478999999999986542 1233444443332222223568
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
++++||++|. |+++++++|.+
T Consensus 146 ~~~~Sa~~g~----------gv~e~~~~l~~ 166 (167)
T cd04160 146 VLPVSALEGT----------GVREGIEWLVE 166 (167)
T ss_pred EEEeeCCCCc----------CHHHHHHHHhc
Confidence 9999999998 99999998854
No 136
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=2.7e-17 Score=187.62 Aligned_cols=191 Identities=29% Similarity=0.279 Sum_probs=137.3
Q ss_pred eEEeccchhHHHHHHHHHhhhhccchHHHHHHhhcccccccccceeeeecccCCcceehhhhhhccCccccccccccccc
Q psy1760 169 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIM 248 (793)
Q Consensus 169 ~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~ 248 (793)
+.+.+..|.-+..+...+...+...... ....-..+|+++|++|+|||||+++|++..
T Consensus 140 ~~iSa~~g~gv~~l~~~I~~~~~~~~~~--------~~~~~~~~v~ivG~~n~GKStlin~ll~~~-------------- 197 (435)
T PRK00093 140 YPISAEHGRGIGDLLDAILEELPEEEEE--------DEEDEPIKIAIIGRPNVGKSSLINALLGEE-------------- 197 (435)
T ss_pred EEEEeeCCCCHHHHHHHHHhhCCccccc--------cccccceEEEEECCCCCCHHHHHHHHhCCC--------------
Confidence 3455566666777766665533211100 000112589999999999999999998762
Q ss_pred cchhhccccceEEeeeeeEEeecCeEEEEecCCCcccch-----------HHHHHHhhccCcEEEEEeCCCCCCchhHHH
Q psy1760 249 DSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG-----------GEVERILSMVDNVLLLIDAVEGPMPQTRFV 317 (793)
Q Consensus 249 D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~-----------~ev~~~l~~aD~allVVDa~~g~~~qt~~~ 317 (793)
.......+|+|++.....+.+++..+++|||||+.+.. ....++++.+|++|+|+|+.++...|+..+
T Consensus 198 -~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i 276 (435)
T PRK00093 198 -RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRI 276 (435)
T ss_pred -ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHH
Confidence 22334567999999888888999999999999975432 223457889999999999999999999999
Q ss_pred HHHHHHcCCccEEEEecccCCCCC-hhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHH
Q psy1760 318 TRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAIL 396 (793)
Q Consensus 318 l~~~~~~~ip~IvvINKiD~~~a~-~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~ 396 (793)
+..+.+.+.|+|+|+||+|+.+.. ..+..+++...+.. ....|++++||++|. |++++++.+.
T Consensus 277 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~------~~~~~i~~~SA~~~~----------gv~~l~~~i~ 340 (435)
T PRK00093 277 AGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPF------LDYAPIVFISALTGQ----------GVDKLLEAID 340 (435)
T ss_pred HHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhccc------ccCCCEEEEeCCCCC----------CHHHHHHHHH
Confidence 999999999999999999997321 22233333322211 124689999999998 8888888876
Q ss_pred hh
Q psy1760 397 KY 398 (793)
Q Consensus 397 ~~ 398 (793)
+.
T Consensus 341 ~~ 342 (435)
T PRK00093 341 EA 342 (435)
T ss_pred HH
Confidence 53
No 137
>PRK15494 era GTPase Era; Provisional
Probab=99.72 E-value=3.2e-17 Score=180.48 Aligned_cols=158 Identities=25% Similarity=0.265 Sum_probs=117.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH--
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG-- 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~-- 288 (793)
.+|+++|++|+|||||+++|++... .......++|+......+.+++.+++||||||+.+...
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~---------------~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l 117 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKL---------------SIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSL 117 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCce---------------eeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccH
Confidence 3799999999999999999986522 12233456666666667778899999999999854211
Q ss_pred ------HHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccc
Q psy1760 289 ------EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 289 ------ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~ 362 (793)
....++..||++|+|+|+.++....+..++..+...+.|+|+|+||+|+.... ..++.+.+....
T Consensus 118 ~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~----~~~~~~~l~~~~----- 188 (339)
T PRK15494 118 EKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKY----LNDIKAFLTENH----- 188 (339)
T ss_pred HHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcccc----HHHHHHHHHhcC-----
Confidence 12234788999999999998877777777777777888999999999986432 233333332221
Q ss_pred cCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 363 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 363 l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
...+++++||++|. |++.|+++|.+++|..
T Consensus 189 ~~~~i~~iSAktg~----------gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 189 PDSLLFPISALSGK----------NIDGLLEYITSKAKIS 218 (339)
T ss_pred CCcEEEEEeccCcc----------CHHHHHHHHHHhCCCC
Confidence 12468999999998 9999999999988753
No 138
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.71 E-value=6.6e-17 Score=184.15 Aligned_cols=154 Identities=29% Similarity=0.373 Sum_probs=123.2
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCccc------
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD------ 285 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d------ 285 (793)
.|+++|++|+|||||+|+|++... ...+...|+|++.....+.|++..+++|||||+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~---------------~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 65 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD---------------AIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLD 65 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc---------------ceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHH
Confidence 378999999999999999986532 22344568888888889999999999999999843
Q ss_pred --chHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 286 --FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 286 --f~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
+...+..++..+|++++|+|+.++.......+.+.+.+.+.|+++|+||+|....+. ...+ +..++.
T Consensus 66 ~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~--~~~~----~~~lg~----- 134 (429)
T TIGR03594 66 KQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDA--VAAE----FYSLGF----- 134 (429)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccc--cHHH----HHhcCC-----
Confidence 344556678999999999999999999998899999889999999999999875431 1111 222222
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
-+++++||++|. |+.+|++.+.+.++..
T Consensus 135 -~~~~~vSa~~g~----------gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 135 -GEPIPISAEHGR----------GIGDLLDAILELLPEE 162 (429)
T ss_pred -CCeEEEeCCcCC----------ChHHHHHHHHHhcCcc
Confidence 158999999998 9999999999988764
No 139
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.70 E-value=1.3e-16 Score=156.83 Aligned_cols=159 Identities=29% Similarity=0.342 Sum_probs=114.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccch---
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG--- 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~--- 287 (793)
.+|+++|++|+|||||+++|++.... ..+..+++|.......+.+++..+++|||||+.+..
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~ 67 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERV---------------IVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVE 67 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccce---------------eccCCCCCccCceeeEEEECCeeEEEEECCCCccccchh
Confidence 47899999999999999999865221 122335666666666777888899999999975541
Q ss_pred --------HHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhccc
Q psy1760 288 --------GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 359 (793)
Q Consensus 288 --------~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~ 359 (793)
......+..+|++++|+|+.++...+...++..+...+.|+++++||+|+...+ ....+++.+.+.+....
T Consensus 68 ~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~ 146 (174)
T cd01895 68 EGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKD-SKTMKEFKKEIRRKLPF 146 (174)
T ss_pred ccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCcc-HHHHHHHHHHHHhhccc
Confidence 122345678999999999999888777778888888899999999999997652 11222222222211110
Q ss_pred ccccCccEEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 360 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 360 ~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
....|++++||+++. |++.+++++..
T Consensus 147 --~~~~~~~~~Sa~~~~----------~i~~~~~~l~~ 172 (174)
T cd01895 147 --LDYAPIVFISALTGQ----------GVDKLFDAIDE 172 (174)
T ss_pred --ccCCceEEEeccCCC----------CHHHHHHHHHH
Confidence 113689999999998 89999988754
No 140
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=5.3e-16 Score=178.50 Aligned_cols=154 Identities=27% Similarity=0.391 Sum_probs=119.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCccc-----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD----- 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d----- 285 (793)
.+|+|+|.+|+|||||+++|++... ...+...|+|.+.....+.|++..+++|||||+..
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~---------------~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~ 103 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRRE---------------AVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGL 103 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCc---------------ccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhH
Confidence 5799999999999999999986521 22344668888888888899999999999999763
Q ss_pred ---chHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccc
Q psy1760 286 ---FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 286 ---f~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~ 362 (793)
+...+..++..||++|+|+|++++.......++..+...+.|+|+|+||+|+..... +..+++ .++.
T Consensus 104 ~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~-----~~~~~~-~~g~---- 173 (472)
T PRK03003 104 QASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA-----DAAALW-SLGL---- 173 (472)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch-----hhHHHH-hcCC----
Confidence 333455678899999999999998877777788888888999999999999864321 111111 2222
Q ss_pred cCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 363 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 363 l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
.. .+++||++|. |+++|++.|.+.++.
T Consensus 174 -~~-~~~iSA~~g~----------gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 174 -GE-PHPVSALHGR----------GVGDLLDAVLAALPE 200 (472)
T ss_pred -CC-eEEEEcCCCC----------CcHHHHHHHHhhccc
Confidence 12 4689999998 999999999988866
No 141
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=1.7e-16 Score=182.59 Aligned_cols=194 Identities=17% Similarity=0.189 Sum_probs=136.3
Q ss_pred eEEeccchhHHHHHHHHHhhhhccchHHHHHHhhcccccccccceeeeecccCCcceehhhhhhccCccccccccccccc
Q psy1760 169 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIM 248 (793)
Q Consensus 169 ~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~ 248 (793)
+.+.+..|.-+..|...|...+..... . ..... ...+|+++|++|+|||||+++|++..
T Consensus 177 ~~iSA~~g~gi~eL~~~i~~~l~~~~~--~--~~~~~---~~~kI~iiG~~nvGKSSLin~l~~~~-------------- 235 (472)
T PRK03003 177 HPVSALHGRGVGDLLDAVLAALPEVPR--V--GSASG---GPRRVALVGKPNVGKSSLLNKLAGEE-------------- 235 (472)
T ss_pred EEEEcCCCCCcHHHHHHHHhhcccccc--c--ccccc---cceEEEEECCCCCCHHHHHHHHhCCC--------------
Confidence 446666777777777777655422100 0 00001 12589999999999999999998652
Q ss_pred cchhhccccceEEeeeeeEEeecCeEEEEecCCCccc---------chHHH--HHHhhccCcEEEEEeCCCCCCchhHHH
Q psy1760 249 DSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD---------FGGEV--ERILSMVDNVLLLIDAVEGPMPQTRFV 317 (793)
Q Consensus 249 D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d---------f~~ev--~~~l~~aD~allVVDa~~g~~~qt~~~ 317 (793)
....+...|+|++.....+.+++..+.||||||+.. +...+ ..+++.||++|+|+|++++...+...+
T Consensus 236 -~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~ 314 (472)
T PRK03003 236 -RSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRV 314 (472)
T ss_pred -cccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHH
Confidence 222345678888888888889999999999999632 22222 235789999999999999999988888
Q ss_pred HHHHHHcCCccEEEEecccCCCCCh-hhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHH
Q psy1760 318 TRKALKLGFKPIVVVNKIDRSNARP-EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAIL 396 (793)
Q Consensus 318 l~~~~~~~ip~IvvINKiD~~~a~~-~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~ 396 (793)
+..+...+.|+|+|+||+|+..... ....+++.+.+... ...|++++||++|. |++++++.+.
T Consensus 315 ~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~------~~~~~~~~SAk~g~----------gv~~lf~~i~ 378 (472)
T PRK03003 315 LSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQV------PWAPRVNISAKTGR----------AVDKLVPALE 378 (472)
T ss_pred HHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhcccC------CCCCEEEEECCCCC----------CHHHHHHHHH
Confidence 8888888999999999999975321 12222333222111 13689999999998 8888888886
Q ss_pred hhcC
Q psy1760 397 KYVP 400 (793)
Q Consensus 397 ~~lp 400 (793)
+.++
T Consensus 379 ~~~~ 382 (472)
T PRK03003 379 TALE 382 (472)
T ss_pred HHHH
Confidence 6553
No 142
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.67 E-value=3.4e-16 Score=154.28 Aligned_cols=153 Identities=20% Similarity=0.263 Sum_probs=102.7
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCe-EEEEecCCCccc-----
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT-RINIIDTPGHAD----- 285 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~-~i~iiDTPGh~d----- 285 (793)
+|+++|++|+|||||+++|.+... ......+.|+......+.+++. .++||||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~----------------~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP----------------KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG 65 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc----------------cccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc
Confidence 789999999999999999975321 1112234455555566677776 999999999743
Q ss_pred --chHHHHHHhhccCcEEEEEeCCCC-CCchh-HHHHHHHHH-----cCCccEEEEecccCCCCChhhhHhHHHHHHhhh
Q psy1760 286 --FGGEVERILSMVDNVLLLIDAVEG-PMPQT-RFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 356 (793)
Q Consensus 286 --f~~ev~~~l~~aD~allVVDa~~g-~~~qt-~~~l~~~~~-----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l 356 (793)
+.....+.+..+|++++|+|+++. -..+. ..+.+.+.. .+.|+++|+||+|+.... ...+.+.+.+...
T Consensus 66 ~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~~ 143 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEE--ELFELLKELLKEL 143 (170)
T ss_pred CCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCch--hhHHHHHHHHhhC
Confidence 233444556679999999999875 22222 223333332 367899999999986532 2222233322211
Q ss_pred cccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 357 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 357 ~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
...+++++||+++. |++.+++.|.+.
T Consensus 144 ------~~~~~~~~Sa~~~~----------gi~~l~~~i~~~ 169 (170)
T cd01898 144 ------WGKPVFPISALTGE----------GLDELLRKLAEL 169 (170)
T ss_pred ------CCCCEEEEecCCCC----------CHHHHHHHHHhh
Confidence 24579999999998 999999998754
No 143
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.67 E-value=3.5e-16 Score=152.02 Aligned_cols=147 Identities=27% Similarity=0.366 Sum_probs=106.7
Q ss_pred eeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH-----
Q psy1760 215 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE----- 289 (793)
Q Consensus 215 IiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e----- 289 (793)
++|++|+|||||++++.+... .....+|+|+......+.+++..+++|||||+.+|...
T Consensus 1 l~G~~~~GKssl~~~~~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~ 64 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ----------------KVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEK 64 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc----------------cccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHH
Confidence 579999999999999975421 11223578888877888888999999999999887642
Q ss_pred -HHHHhh--ccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 290 -VERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 290 -v~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
....+. .+|++|+|+|+... .+....+..+...++|+++|+||+|+.+.+. .......+... +.+|
T Consensus 65 ~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~--~~~~~~~~~~~-------~~~~ 133 (158)
T cd01879 65 VARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRG--IKIDLDKLSEL-------LGVP 133 (158)
T ss_pred HHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhccccc--chhhHHHHHHh-------hCCC
Confidence 333443 89999999999873 3334455566778999999999999975431 11112111111 2368
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
++++||++|. |++.+++.|...
T Consensus 134 ~~~iSa~~~~----------~~~~l~~~l~~~ 155 (158)
T cd01879 134 VVPTSARKGE----------GIDELKDAIAEL 155 (158)
T ss_pred eEEEEccCCC----------CHHHHHHHHHHH
Confidence 9999999998 899999988664
No 144
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.66 E-value=5.3e-16 Score=150.10 Aligned_cols=146 Identities=25% Similarity=0.275 Sum_probs=107.4
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH--
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE-- 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e-- 289 (793)
+|+++|++|+|||||+++|+...... ....+++|.......+.+.+.++++|||||+.++...
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~ 67 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAI---------------VSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIE 67 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEe---------------ccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHH
Confidence 68999999999999999998653211 1123466666666677788899999999999877543
Q ss_pred ------HHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 290 ------VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 290 ------v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
+...+..+|++++|+|+...........+.. ..+.|+++|+||+|+...... .....
T Consensus 68 ~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~---------------~~~~~ 130 (157)
T cd04164 68 KIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL---------------LSLLA 130 (157)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc---------------ccccC
Confidence 2345778999999999997544444333333 467899999999999754311 01122
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
..|++.+||+++. |++.|+++|.+.+
T Consensus 131 ~~~~~~~Sa~~~~----------~v~~l~~~l~~~~ 156 (157)
T cd04164 131 GKPIIAISAKTGE----------GLDELKEALLELA 156 (157)
T ss_pred CCceEEEECCCCC----------CHHHHHHHHHHhh
Confidence 5689999999998 9999999987654
No 145
>PRK00089 era GTPase Era; Reviewed
Probab=99.66 E-value=7.7e-16 Score=166.48 Aligned_cols=158 Identities=28% Similarity=0.311 Sum_probs=111.7
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccch----
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG---- 287 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~---- 287 (793)
.|+++|++|+|||||+|+|++.... ......++|..........++..+.++||||+.+..
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~---------------~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~ 71 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKIS---------------IVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALN 71 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcee---------------ecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHH
Confidence 5899999999999999999876321 112223344433333344456899999999976532
Q ss_pred ----HHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 288 ----GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 288 ----~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
..+..++..+|++++|+|+.++.......++..+...+.|+++|+||+|+... .......+ +.+.+.. .
T Consensus 72 ~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~-~~~l~~~~-~~l~~~~-----~ 144 (292)
T PRK00089 72 RAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD-KEELLPLL-EELSELM-----D 144 (292)
T ss_pred HHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC-HHHHHHHH-HHHHhhC-----C
Confidence 33455678899999999999877777777777777778999999999999732 12222222 2221111 1
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
..+++++||++|. |++.|++.|.+++|+
T Consensus 145 ~~~i~~iSA~~~~----------gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 145 FAEIVPISALKGD----------NVDELLDVIAKYLPE 172 (292)
T ss_pred CCeEEEecCCCCC----------CHHHHHHHHHHhCCC
Confidence 2468999999998 999999999998875
No 146
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.66 E-value=7.4e-16 Score=151.73 Aligned_cols=153 Identities=20% Similarity=0.136 Sum_probs=102.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH--
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG-- 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~-- 288 (793)
++|+++|++|+|||||+++|+..... .+...+.|.......+.+++.+++||||||+.+...
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 64 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE----------------VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE 64 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc----------------cCCCCCcccceeEEEEccCceEEEEEECCCcCCccccC
Confidence 37899999999999999999865211 112235565556666677789999999999854211
Q ss_pred ------HHHHH-hhccCcEEEEEeCCCCCC---chhHHHHHHHHHc--CCccEEEEecccCCCCChhhhHhHHHHHHhhh
Q psy1760 289 ------EVERI-LSMVDNVLLLIDAVEGPM---PQTRFVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 356 (793)
Q Consensus 289 ------ev~~~-l~~aD~allVVDa~~g~~---~qt~~~l~~~~~~--~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l 356 (793)
..... ...+|++|+|+|+++... .....++..+... +.|+|+|+||+|+...+ .+ .+..+. ..
T Consensus 65 ~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~--~~-~~~~~~-~~- 139 (168)
T cd01897 65 RNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFE--DL-SEIEEE-EE- 139 (168)
T ss_pred CchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchh--hH-HHHHHh-hh-
Confidence 11111 234699999999986432 2223344555444 78999999999997532 11 112121 11
Q ss_pred cccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 357 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 357 ~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
...+|++++||++|. |+++++++|.+.+
T Consensus 140 -----~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 167 (168)
T cd01897 140 -----LEGEEVLKISTLTEE----------GVDEVKNKACELL 167 (168)
T ss_pred -----hccCceEEEEecccC----------CHHHHHHHHHHHh
Confidence 124679999999998 9999999987654
No 147
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.65 E-value=4.6e-16 Score=136.59 Aligned_cols=85 Identities=24% Similarity=0.422 Sum_probs=78.7
Q ss_pred CCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccc
Q psy1760 407 NNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIE 486 (793)
Q Consensus 407 ~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~ 486 (793)
++||+++||++.++++.|+++++||++|+|+.||.|++.. ...+|+.+|+.++|.++.++++|.|||||++.|++
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-----~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl~ 75 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-----EEKIKITELRVFNNGEVVTADTVTAGDIAILTGLK 75 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-----CcEEEeceeEEEeCCCeEECcEECCCCEEEEECCC
Confidence 4799999999999999999999999999999999998753 13578999999999999999999999999999999
Q ss_pred eeecCCeEeC
Q psy1760 487 EICIGSTICD 496 (793)
Q Consensus 487 ~i~iGdtl~~ 496 (793)
++.+||||++
T Consensus 76 ~~~~Gdtl~~ 85 (85)
T cd03690 76 GLRVGDVLGD 85 (85)
T ss_pred CCcCccccCC
Confidence 9999999964
No 148
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.65 E-value=1.1e-15 Score=168.80 Aligned_cols=148 Identities=21% Similarity=0.214 Sum_probs=101.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee-cCeEEEEecCCCc-ccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGH-ADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~-~~~~i~iiDTPGh-~df~~ 288 (793)
..|+++|++|+|||||+|+|++.. ...+...+.|++.....+.+ ++..+.||||||+ .+...
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~----------------~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~ 253 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGAD----------------VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPH 253 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc----------------eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCH
Confidence 379999999999999999998652 11223346677777777777 5789999999997 33221
Q ss_pred H-------HHHHhhccCcEEEEEeCCCCCCchhH----HHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhc
Q psy1760 289 E-------VERILSMVDNVLLLIDAVEGPMPQTR----FVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC 357 (793)
Q Consensus 289 e-------v~~~l~~aD~allVVDa~~g~~~qt~----~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~ 357 (793)
+ +...+..||++|+|+|+++....... .+++.+...+.|+|+|+||+|+... ..+ . ...
T Consensus 254 ~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~--~~v-~---~~~---- 323 (351)
T TIGR03156 254 ELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE--PRI-E---RLE---- 323 (351)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh--HhH-H---HHH----
Confidence 1 12247789999999999876543322 2222222236899999999998642 111 1 110
Q ss_pred ccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 358 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 358 ~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
. ...+++++||++|. |++.|++.|.+.
T Consensus 324 ~----~~~~~i~iSAktg~----------GI~eL~~~I~~~ 350 (351)
T TIGR03156 324 E----GYPEAVFVSAKTGE----------GLDLLLEAIAER 350 (351)
T ss_pred h----CCCCEEEEEccCCC----------CHHHHHHHHHhh
Confidence 0 01368999999998 999999998654
No 149
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.65 E-value=6.6e-16 Score=150.89 Aligned_cols=154 Identities=18% Similarity=0.228 Sum_probs=103.5
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+|+++|.+++|||||+++|........ ......|.++ ..+.+++..+++|||||+.+|...+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~-------------~~~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~~~~~ 63 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ-------------IIVPTVGFNV----ESFEKGNLSFTAFDMSGQGKYRGLWE 63 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc-------------eecCccccce----EEEEECCEEEEEEECCCCHhhHHHHH
Confidence 578999999999999999975421100 0011112222 33556789999999999999999889
Q ss_pred HHhhccCcEEEEEeCCCCCCc-hhHHHHHHHH------HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 292 RILSMVDNVLLLIDAVEGPMP-QTRFVTRKAL------KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~------~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
..++.+|++|+|+|+++.... .....+..+. ..++|+++|+||+|+.++... .++.+.+. +... ....
T Consensus 64 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~---~~~~~~l~-~~~~-~~~~ 138 (162)
T cd04157 64 HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTA---VKITQLLG-LENI-KDKP 138 (162)
T ss_pred HHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCH---HHHHHHhC-Cccc-cCce
Confidence 999999999999999875321 1222233222 247899999999999764321 22222221 1100 1123
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
++++.+||++|. |+++++++|.+
T Consensus 139 ~~~~~~Sa~~g~----------gv~~~~~~l~~ 161 (162)
T cd04157 139 WHIFASNALTGE----------GLDEGVQWLQA 161 (162)
T ss_pred EEEEEeeCCCCC----------chHHHHHHHhc
Confidence 568999999998 99999999854
No 150
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.65 E-value=6.4e-16 Score=153.61 Aligned_cols=153 Identities=18% Similarity=0.244 Sum_probs=105.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|..... . ..+...|. ....+.+++..+++|||||+..|...+
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~--~-------------~~~~t~g~----~~~~~~~~~~~l~l~D~~G~~~~~~~~ 75 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDI--D-------------TISPTLGF----QIKTLEYEGYKLNIWDVGGQKTLRPYW 75 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCC--C-------------CcCCcccc----ceEEEEECCEEEEEEECCCCHHHHHHH
Confidence 4789999999999999999975411 0 01111222 223455668899999999999988888
Q ss_pred HHHhhccCcEEEEEeCCCCCC-chhHHHHHHH----HHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPM-PQTRFVTRKA----LKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~-~qt~~~l~~~----~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
...++.+|++++|+|+.+.-. ......+... ...+.|+++|+||+|+.+.. ..+++.+.+...... ...+
T Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~~~~~~~~~~~~~--~~~~ 150 (173)
T cd04154 76 RNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL---SEEEIREALELDKIS--SHHW 150 (173)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC---CHHHHHHHhCccccC--CCce
Confidence 888999999999999987521 1122222222 22578999999999997643 233444443221111 2246
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
|++.+||++|. |+++++++|.+
T Consensus 151 ~~~~~Sa~~g~----------gi~~l~~~l~~ 172 (173)
T cd04154 151 RIQPCSAVTGE----------GLLQGIDWLVD 172 (173)
T ss_pred EEEeccCCCCc----------CHHHHHHHHhc
Confidence 89999999998 99999998854
No 151
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65 E-value=1.2e-15 Score=150.29 Aligned_cols=155 Identities=19% Similarity=0.223 Sum_probs=105.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|.... +.. +....+..+.....+.+++ ..++||||||+..|..
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~--~~~--------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~ 67 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGT--FSE--------------RQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC--Ccc--------------cCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHH
Confidence 589999999999999999997531 110 0011112223334455555 5789999999999998
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH-HHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.....++.+|++++|+|+.+....+.. .++..+.. .++|+|+|+||+|+...+ +...++...+....+ .
T Consensus 68 ~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~------~ 140 (165)
T cd01864 68 ITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQR-EVLFEEACTLAEKNG------M 140 (165)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc-ccCHHHHHHHHHHcC------C
Confidence 888899999999999999875433332 23333332 467899999999997543 112233333322222 1
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
.+++++||++|. |++++++.+.+.
T Consensus 141 ~~~~e~Sa~~~~----------~v~~~~~~l~~~ 164 (165)
T cd01864 141 LAVLETSAKESQ----------NVEEAFLLMATE 164 (165)
T ss_pred cEEEEEECCCCC----------CHHHHHHHHHHh
Confidence 358999999998 999999988764
No 152
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.64 E-value=1.5e-15 Score=173.29 Aligned_cols=153 Identities=26% Similarity=0.344 Sum_probs=117.4
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCccc----c-
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD----F- 286 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d----f- 286 (793)
.|+++|++|+|||||+++|++.... ......|+|.+.....+.|++..+++|||||+.+ +
T Consensus 3 ~I~ivG~~~vGKStL~n~l~~~~~~---------------~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~ 67 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKRDA---------------IVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFE 67 (435)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce---------------eeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHH
Confidence 6899999999999999999865221 1233467888888888899999999999999987 2
Q ss_pred ---hHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 287 ---GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 287 ---~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
......++..+|++|+|+|+.++.......+.+.+...+.|+|+|+||+|.... +. ...++ ..++..
T Consensus 68 ~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~--~~---~~~~~-~~lg~~---- 137 (435)
T PRK00093 68 KQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDE--EA---DAYEF-YSLGLG---- 137 (435)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccc--hh---hHHHH-HhcCCC----
Confidence 233455688999999999999998888778888888889999999999997542 11 11222 122211
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
.++++||++|. |+++|++.|....+.
T Consensus 138 --~~~~iSa~~g~----------gv~~l~~~I~~~~~~ 163 (435)
T PRK00093 138 --EPYPISAEHGR----------GIGDLLDAILEELPE 163 (435)
T ss_pred --CCEEEEeeCCC----------CHHHHHHHHHhhCCc
Confidence 26899999998 999999999875543
No 153
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.64 E-value=1.8e-15 Score=182.13 Aligned_cols=154 Identities=24% Similarity=0.368 Sum_probs=122.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCccc-----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD----- 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d----- 285 (793)
.+|+|+|++|+|||||+|+|++.. ...++...|+|.+.......|++..+++|||||+..
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~---------------~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~ 340 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRR---------------EAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGI 340 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---------------ceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccH
Confidence 579999999999999999998652 123345678999888888899999999999999753
Q ss_pred ---chHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccc
Q psy1760 286 ---FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 286 ---f~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~ 362 (793)
|...+..++..||++|+|+|+.+++.+....+++.+...+.|+|+|+||+|+.... . ...+. ..++..
T Consensus 341 ~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~--~---~~~~~-~~lg~~--- 411 (712)
T PRK09518 341 DSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASE--Y---DAAEF-WKLGLG--- 411 (712)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccch--h---hHHHH-HHcCCC---
Confidence 44555667899999999999999988888888888888999999999999986431 1 11111 122221
Q ss_pred cCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 363 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 363 l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
.++++||++|. |+++|++.|.+.++.
T Consensus 412 ---~~~~iSA~~g~----------GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 412 ---EPYPISAMHGR----------GVGDLLDEALDSLKV 437 (712)
T ss_pred ---CeEEEECCCCC----------CchHHHHHHHHhccc
Confidence 25789999998 999999999998865
No 154
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.63 E-value=1.5e-15 Score=149.26 Aligned_cols=154 Identities=21% Similarity=0.315 Sum_probs=105.7
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+|+++|++|+|||||+++++....... .....+.++......+......+++|||||+..|.....
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 67 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQ--------------QLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHA 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC--------------cCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhH
Confidence 689999999999999999985421100 001112233332333343456789999999999999999
Q ss_pred HHhhccCcEEEEEeCCCCCCchhH-HHHHHHHHc--CCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEE
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQTR-FVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVI 368 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~~--~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi 368 (793)
..++.+|++|+|+|+++....+.. .++..+... ++|+++|+||+|+... ..++..++.. ...+|++
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~-------~~~~~~~ 136 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS----VTQKKFNFAE-------KHNLPLY 136 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh----HHHHHHHHHH-------HcCCeEE
Confidence 999999999999999876443332 344444443 6899999999998532 1122222111 1246899
Q ss_pred EeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 369 YTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 369 ~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
++||++|. |++++++.+.+.+.
T Consensus 137 ~~Sa~~~~----------gv~~l~~~l~~~~~ 158 (161)
T cd04124 137 YVSAADGT----------NVVKLFQDAIKLAV 158 (161)
T ss_pred EEeCCCCC----------CHHHHHHHHHHHHH
Confidence 99999998 99999999887654
No 155
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.63 E-value=1e-15 Score=150.51 Aligned_cols=144 Identities=22% Similarity=0.253 Sum_probs=99.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCc----ccc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH----ADF 286 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh----~df 286 (793)
++|+++|++|+|||||+++|.+... ..+ ....+.|.+. .+|||||. .++
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~-----------------~~~--------~~~~v~~~~~--~~iDtpG~~~~~~~~ 54 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYT-----------------LAR--------KTQAVEFNDK--GDIDTPGEYFSHPRW 54 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCc-----------------cCc--------cceEEEECCC--CcccCCccccCCHHH
Confidence 3699999999999999999864310 000 1122233332 37999996 456
Q ss_pred hHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 287 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 287 ~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
..++..++..+|++++|+|++++....+...+.. ..+.|+++++||+|+...+. +++.+.+..++. ..|
T Consensus 55 ~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~~----~~~~~~~~~~~~-----~~p 123 (158)
T PRK15467 55 YHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDADV----AATRKLLLETGF-----EEP 123 (158)
T ss_pred HHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcccH----HHHHHHHHHcCC-----CCC
Confidence 6666677899999999999998765544433332 24678899999999976443 233343333322 248
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
++++||++|. |+++|++.|.+.++..
T Consensus 124 ~~~~Sa~~g~----------gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 124 IFELNSHDPQ----------SVQQLVDYLASLTKQE 149 (158)
T ss_pred EEEEECCCcc----------CHHHHHHHHHHhchhh
Confidence 9999999998 9999999998777543
No 156
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.63 E-value=1.2e-15 Score=183.71 Aligned_cols=197 Identities=18% Similarity=0.158 Sum_probs=139.0
Q ss_pred eEEeccchhHHHHHHHHHhhhhccchHHHHHHhhcccccccccceeeeecccCCcceehhhhhhccCccccccccccccc
Q psy1760 169 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIM 248 (793)
Q Consensus 169 ~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~ 248 (793)
+.+.+..|+-+..|...|...+...... .....+ .-..+|+++|++|+|||||+++|++..
T Consensus 414 ~~iSA~~g~GI~eLl~~i~~~l~~~~~~----~~a~~~-~~~~kI~ivG~~nvGKSSLin~l~~~~-------------- 474 (712)
T PRK09518 414 YPISAMHGRGVGDLLDEALDSLKVAEKT----SGFLTP-SGLRRVALVGRPNVGKSSLLNQLTHEE-------------- 474 (712)
T ss_pred EEEECCCCCCchHHHHHHHHhccccccc----ccccCC-CCCcEEEEECCCCCCHHHHHHHHhCcc--------------
Confidence 4467777888888888777665321100 000000 112589999999999999999998652
Q ss_pred cchhhccccceEEeeeeeEEeecCeEEEEecCCCccc---------chHH--HHHHhhccCcEEEEEeCCCCCCchhHHH
Q psy1760 249 DSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD---------FGGE--VERILSMVDNVLLLIDAVEGPMPQTRFV 317 (793)
Q Consensus 249 D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d---------f~~e--v~~~l~~aD~allVVDa~~g~~~qt~~~ 317 (793)
........|+|++.....+.+++..++||||||+.+ +... ...+++.+|++++|+|++++...++..+
T Consensus 475 -~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i 553 (712)
T PRK09518 475 -RAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKV 553 (712)
T ss_pred -ccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHH
Confidence 122344578888888888889999999999999642 2221 1345788999999999999999999999
Q ss_pred HHHHHHcCCccEEEEecccCCCCCh-hhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHH
Q psy1760 318 TRKALKLGFKPIVVVNKIDRSNARP-EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAIL 396 (793)
Q Consensus 318 l~~~~~~~ip~IvvINKiD~~~a~~-~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~ 396 (793)
+..+...+.|+|+|+||+|+.+... +...+++...+.. ....|++++||++|. |++.|++.+.
T Consensus 554 ~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~------~~~~~ii~iSAktg~----------gv~~L~~~i~ 617 (712)
T PRK09518 554 MSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTEFDR------VTWARRVNLSAKTGW----------HTNRLAPAMQ 617 (712)
T ss_pred HHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHhccC------CCCCCEEEEECCCCC----------CHHHHHHHHH
Confidence 9888888999999999999975321 1111222221111 113578999999998 8889999887
Q ss_pred hhcCc
Q psy1760 397 KYVPV 401 (793)
Q Consensus 397 ~~lp~ 401 (793)
+..+.
T Consensus 618 ~~~~~ 622 (712)
T PRK09518 618 EALES 622 (712)
T ss_pred HHHHH
Confidence 76653
No 157
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.62 E-value=1.7e-15 Score=148.03 Aligned_cols=152 Identities=16% Similarity=0.142 Sum_probs=102.1
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+|+++|++++|||||+++|...... +. .. |+......+.+.+..+++|||||+.+|.....
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~------------~~---~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 61 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV------------TT---IP----TIGFNVETVTYKNLKFQVWDLGGQTSIRPYWR 61 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc------------Cc---CC----ccCcCeEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 4789999999999999999643110 00 00 11112234556788999999999999988888
Q ss_pred HHhhccCcEEEEEeCCCCCCc-hhHHHHH-HHH---HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 292 RILSMVDNVLLLIDAVEGPMP-QTRFVTR-KAL---KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~-qt~~~l~-~~~---~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
..+..+|++|+|+|+++.... .....+. .+. ..+.|+++|+||+|+.++.. ..++...+..... ....++
T Consensus 62 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~---~~~i~~~~~~~~~--~~~~~~ 136 (158)
T cd04151 62 CYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS---EAEISEKLGLSEL--KDRTWS 136 (158)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC---HHHHHHHhCcccc--CCCcEE
Confidence 889999999999999874221 1122222 222 13789999999999975431 1223222211111 112357
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
++++||++|. |++++++.|.+
T Consensus 137 ~~~~Sa~~~~----------gi~~l~~~l~~ 157 (158)
T cd04151 137 IFKTSAIKGE----------GLDEGMDWLVN 157 (158)
T ss_pred EEEeeccCCC----------CHHHHHHHHhc
Confidence 9999999998 99999998854
No 158
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.62 E-value=2.1e-15 Score=147.57 Aligned_cols=154 Identities=21% Similarity=0.248 Sum_probs=102.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|.+|+|||||++++++........ .++.......+.+++ ..+++|||||+.+|..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~-----------------~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 65 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYD-----------------PTIEDSYTKQCEIDGQWAILDILDTAGQEEFSA 65 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccC-----------------CCccceEEEEEEECCEEEEEEEEECCCCcchhH
Confidence 378999999999999999998653211100 011111112223333 5788999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
.+...++.+|++++|+|+++....+. ..++.... ..++|+++|+||+|+...... ..++..++... .
T Consensus 66 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~-~~~~~~~~~~~-------~ 137 (164)
T cd04145 66 MREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKV-SREEGQELARK-------L 137 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccccccee-cHHHHHHHHHH-------c
Confidence 99999999999999999987432211 12222222 247899999999999754211 11222222221 2
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.+|++.+||++|. |++++++.|...+
T Consensus 138 ~~~~~~~Sa~~~~----------~i~~l~~~l~~~~ 163 (164)
T cd04145 138 KIPYIETSAKDRL----------NVDKAFHDLVRVI 163 (164)
T ss_pred CCcEEEeeCCCCC----------CHHHHHHHHHHhh
Confidence 4679999999998 9999999997654
No 159
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.62 E-value=2.5e-15 Score=147.14 Aligned_cols=158 Identities=16% Similarity=0.224 Sum_probs=107.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
-+|+++|++++|||||+++|+...... ......|.+.......+...+..+.+|||||+..|....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE--------------NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHH
Confidence 378999999999999999998652111 011222333333344444445788999999998888777
Q ss_pred HHHhhccCcEEEEEeCCCCCC-chhHHHHHHHHHc---CCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~~---~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
...++.+|++++|+|+.+... .+...++..+... +.|+++++||+|+...+. ...++...+.... .++
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~-------~~~ 139 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQ-VSTEEAQEYADEN-------GLL 139 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCc-CCHHHHHHHHHHc-------CCE
Confidence 778899999999999986422 2223333444333 477899999999874321 1122233332221 367
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
++++||++|. |+.++++.|.+.+|
T Consensus 140 ~~~~Sa~~~~----------~v~~l~~~l~~~l~ 163 (163)
T cd01860 140 FFETSAKTGE----------NVNELFTEIAKKLP 163 (163)
T ss_pred EEEEECCCCC----------CHHHHHHHHHHHhC
Confidence 9999999998 99999999988764
No 160
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.61 E-value=8.6e-15 Score=142.31 Aligned_cols=156 Identities=27% Similarity=0.267 Sum_probs=107.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH--
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG-- 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~-- 288 (793)
..|+++|.+|+|||||+++|++..... .......+.......+...+..+.+|||||+.+...
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 68 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISI---------------VSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL 68 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEe---------------ccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH
Confidence 468999999999999999998652111 111122333333344455678899999999865432
Q ss_pred ------HHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccc
Q psy1760 289 ------EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 289 ------ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~ 362 (793)
.....+..+|++++|+|+.+........+++.+...+.|.++|+||+|+... .+ ...+..+.+... .
T Consensus 69 ~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~-~~-~~~~~~~~~~~~-----~ 141 (168)
T cd04163 69 GERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD-KE-DLLPLLEKLKEL-----G 141 (168)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcccc-HH-HHHHHHHHHHhc-----c
Confidence 3344588899999999999875556666777777778999999999998742 12 222222222211 1
Q ss_pred cCccEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 363 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 363 l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
...|++.+|++++. ++++|++.|.++
T Consensus 142 ~~~~~~~~s~~~~~----------~~~~l~~~l~~~ 167 (168)
T cd04163 142 PFAEIFPISALKGE----------NVDELLEEIVKY 167 (168)
T ss_pred CCCceEEEEeccCC----------ChHHHHHHHHhh
Confidence 13579999999998 999999998764
No 161
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.61 E-value=2.4e-15 Score=146.70 Aligned_cols=152 Identities=17% Similarity=0.170 Sum_probs=105.2
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+|+++|++|+|||||+++++..... . .. .|+......+.+++..+.+|||||+..|.....
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~--~-------------~~----~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV--T-------------TI----PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWK 61 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC--C-------------CC----CCcCcceEEEEECCEEEEEEECCCChhhHHHHH
Confidence 4789999999999999999866310 0 01 111222344666789999999999999988888
Q ss_pred HHhhccCcEEEEEeCCCCC-CchhHHHHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 292 RILSMVDNVLLLIDAVEGP-MPQTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
..+..+|++++|+|++.+. .......+.... ..+.|+++|+||+|+...+ ..+++.+.+..... ....+|
T Consensus 62 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~---~~~~~~~~~~~~~~--~~~~~~ 136 (158)
T cd00878 62 HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL---SVSELIEKLGLEKI--LGRRWH 136 (158)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc---CHHHHHHhhChhhc--cCCcEE
Confidence 8899999999999999752 222333333322 3578999999999997643 12233333221111 122468
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
++.+||++|. |++++++.|..
T Consensus 137 ~~~~Sa~~~~----------gv~~~~~~l~~ 157 (158)
T cd00878 137 IQPCSAVTGD----------GLDEGLDWLLQ 157 (158)
T ss_pred EEEeeCCCCC----------CHHHHHHHHhh
Confidence 9999999998 99999998864
No 162
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.61 E-value=6.5e-15 Score=150.47 Aligned_cols=150 Identities=20% Similarity=0.190 Sum_probs=99.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCe-EEEEecCCCcccc-hH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT-RINIIDTPGHADF-GG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~-~i~iiDTPGh~df-~~ 288 (793)
.+|+++|++|+|||||+++|+..... .....+.|+......+.+.+. .+++|||||+.+. ..
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 105 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVY----------------AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPH 105 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhc----------------cCCccceeccceeEEEEecCCceEEEeCCCccccCCCH
Confidence 48999999999999999999865211 011123344444555666554 8999999998442 11
Q ss_pred HH-------HHHhhccCcEEEEEeCCCCCCchhH-HHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhc
Q psy1760 289 EV-------ERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC 357 (793)
Q Consensus 289 ev-------~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~ 357 (793)
.. ...+..+|++++|+|++++...... .+...+.. .+.|+++|+||+|+....... ..+
T Consensus 106 ~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~------~~~---- 175 (204)
T cd01878 106 QLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE------ERL---- 175 (204)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH------HHh----
Confidence 11 1235679999999999976544332 23333332 367899999999997542111 111
Q ss_pred ccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 358 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 358 ~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.....|++++||++|. |++++++.|.+.+
T Consensus 176 ---~~~~~~~~~~Sa~~~~----------gi~~l~~~L~~~~ 204 (204)
T cd01878 176 ---EAGRPDAVFISAKTGE----------GLDELLEAIEELL 204 (204)
T ss_pred ---hcCCCceEEEEcCCCC----------CHHHHHHHHHhhC
Confidence 1124579999999998 9999999987653
No 163
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.60 E-value=4.4e-15 Score=178.21 Aligned_cols=152 Identities=24% Similarity=0.314 Sum_probs=114.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+|+|.+... .+....|+|++.+...+.+++++++++||||+.+|....
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~----------------~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~ 67 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ----------------RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTIS 67 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC----------------ccCCCCCceEeeEEEEEEcCceEEEEEECCCcccccccc
Confidence 4799999999999999999965411 123347899999888999999999999999998875321
Q ss_pred ------H----HHh--hccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCC-hhhhHhHHHHHHhhhc
Q psy1760 291 ------E----RIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKLC 357 (793)
Q Consensus 291 ------~----~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~-~~~v~~~i~~~~~~l~ 357 (793)
+ ..+ ..+|++++|+|+++. .+...++.++.+.++|+++|+||+|+.+.+ .....+++.+
T Consensus 68 ~~~s~~E~i~~~~l~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~------ 139 (772)
T PRK09554 68 SQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSA------ 139 (772)
T ss_pred ccccHHHHHHHHHHhccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHH------
Confidence 1 122 368999999999874 334456677888999999999999986432 2222222222
Q ss_pred ccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 358 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 358 ~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
.+.+|++++||++|. |+++|.+.+.+..+
T Consensus 140 ----~LG~pVvpiSA~~g~----------GIdeL~~~I~~~~~ 168 (772)
T PRK09554 140 ----RLGCPVIPLVSTRGR----------GIEALKLAIDRHQA 168 (772)
T ss_pred ----HhCCCEEEEEeecCC----------CHHHHHHHHHHhhh
Confidence 235789999999998 89999999876653
No 164
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.60 E-value=2.8e-15 Score=150.73 Aligned_cols=160 Identities=19% Similarity=0.223 Sum_probs=103.4
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEE-eecCeEEEEecCCCcccchHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSI-EYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~-~~~~~~i~iiDTPGh~df~~ev 290 (793)
.|+++|++|+|||||+++++...... . ....|.+........ .+.+..+++|||||+..|...+
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~~------------~---~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 69 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFVN------------T---VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLW 69 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCC------------c---CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHH
Confidence 68999999999999999997542110 0 001122222211111 3356889999999999998888
Q ss_pred HHHhhccCcEEEEEeCCCCCCch-hH----HHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQ-TR----FVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~q-t~----~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
...++.+|++|+|+|+++..... .. +++......+.|+++|+||+|+..... .+++..++. +........+
T Consensus 70 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~---~~~~~~~~~-~~~~~~~~~~ 145 (183)
T cd04152 70 KSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALS---VSEVEKLLA-LHELSASTPW 145 (183)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCC---HHHHHHHhC-ccccCCCCce
Confidence 88899999999999998742111 11 122223345789999999999864311 122222221 1111111135
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
+++++||++|. |++++++.|.+.+.
T Consensus 146 ~~~~~SA~~~~----------gi~~l~~~l~~~l~ 170 (183)
T cd04152 146 HVQPACAIIGE----------GLQEGLEKLYEMIL 170 (183)
T ss_pred EEEEeecccCC----------CHHHHHHHHHHHHH
Confidence 78999999998 99999999887663
No 165
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.60 E-value=7.6e-15 Score=143.33 Aligned_cols=153 Identities=18% Similarity=0.173 Sum_probs=107.3
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~e 289 (793)
+|+++|++++|||||+++|+...... +..++++.+.....+.+++ ..+++|||||+..|...
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~ 65 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN----------------QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSL 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc----------------cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence 68999999999999999998652211 2233455555555555655 56899999999999888
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchhH-HHHHHH-HHc--CCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQTR-FVTRKA-LKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~-~~~--~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
+...++.+|++++|+|+++....+.. .++... ... +.|+++++||+|+...+ ....++....... ..+
T Consensus 66 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~-~~~~~~~~~~~~~-------~~~ 137 (161)
T cd01861 66 IPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKR-QVSTEEGEKKAKE-------LNA 137 (161)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccC-ccCHHHHHHHHHH-------hCC
Confidence 88899999999999999875333322 233322 233 38999999999995432 1122223322221 236
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
+++.+||+++. |+++++++|.+.
T Consensus 138 ~~~~~Sa~~~~----------~v~~l~~~i~~~ 160 (161)
T cd01861 138 MFIETSAKAGH----------NVKELFRKIASA 160 (161)
T ss_pred EEEEEeCCCCC----------CHHHHHHHHHHh
Confidence 78999999998 999999998764
No 166
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.60 E-value=4e-15 Score=130.07 Aligned_cols=83 Identities=19% Similarity=0.213 Sum_probs=77.0
Q ss_pred ceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceee
Q psy1760 410 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC 489 (793)
Q Consensus 410 ~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~ 489 (793)
|.++|||+.++++.|+++++||++|+|++||.|++... + ...+|.+|+.++|.++.++++|.|||||++.|++++.
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~--~--~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~ 76 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNT--G--KKERISRLLQPFADQYQEIPSLSAGNIGVITGLKQTR 76 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCC--C--CEEEeeEEEEEECCCceECCeeCCCCEEEEECCCCcc
Confidence 56899999999999999999999999999999998755 2 3578999999999999999999999999999999999
Q ss_pred cCCeEeC
Q psy1760 490 IGSTICD 496 (793)
Q Consensus 490 iGdtl~~ 496 (793)
+|||||.
T Consensus 77 ~Gdtl~~ 83 (83)
T cd04092 77 TGDTLVT 83 (83)
T ss_pred cCCEEeC
Confidence 9999973
No 167
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.60 E-value=4.9e-15 Score=144.98 Aligned_cols=155 Identities=20% Similarity=0.175 Sum_probs=104.7
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+|+++|++++|||||+++|+........ ....|.........+......+++|||||+.+|.....
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~ 67 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDS--------------QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTR 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC--------------CCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHH
Confidence 6899999999999999999865321110 01112222222223333346789999999999988888
Q ss_pred HHhhccCcEEEEEeCCCCCCchhHH-HHHHHH---HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQTRF-VTRKAL---KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~qt~~-~l~~~~---~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
..++.+|++++|+|+++....+... ++.... ..++|+++|.||+|+...+ ....++...+.... .+++
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~-------~~~~ 139 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQR-EVTFLEASRFAQEN-------GLLF 139 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhc-cCCHHHHHHHHHHc-------CCEE
Confidence 8899999999999999864433322 223222 3478899999999986532 11223333333222 3579
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
+.+||+++. |++++++.+.+.
T Consensus 140 ~~~Sa~~~~----------~i~~~~~~~~~~ 160 (161)
T cd04113 140 LETSALTGE----------NVEEAFLKCARS 160 (161)
T ss_pred EEEECCCCC----------CHHHHHHHHHHh
Confidence 999999998 999999998754
No 168
>KOG1191|consensus
Probab=99.60 E-value=1.7e-15 Score=166.11 Aligned_cols=327 Identities=18% Similarity=0.161 Sum_probs=202.8
Q ss_pred eEEEeeCCCCC---------ChHHHHHHHHHHhc------cccccCCCCCCCCCcceeeeeecc-----cccccchhccC
Q psy1760 11 VVIPKYKPYGL---------SSNNALKKIKYLLN------AKKVGYTGTLDPFATGLLPLCFGE-----ATKFSNYLSEA 70 (793)
Q Consensus 11 g~~~~~Kp~g~---------ts~~~v~~~~~~~~------~~k~gh~gtLDp~a~G~l~~~~g~-----~tk~~~~~~~~ 70 (793)
-++++.=|.|- +-.+.....|+++. .+++|-.---|| =+.+.-+++ ...+.=|+. .
T Consensus 43 Ti~alst~~~~~~aiai~R~sG~~a~kv~r~L~~s~~v~~~~~~~~~~l~~~---~~r~~~~~e~~v~~D~~l~l~~~-g 118 (531)
T KOG1191|consen 43 TIFALSTGIGLTSAIAIFRISGPDATKVARRLLRSVMVPKRRNAGLRALYNP---EVRVYVVDEDGVTRDRALGLYFL-G 118 (531)
T ss_pred eEEEeecCCCCCcceeEEEecCchHHHHHHHhccccccCCCCccccccccCh---hhcccccCCCCcchhhhhhcccc-C
Confidence 45666666662 22344555555554 346666666677 233333344 233444443 5
Q ss_pred CceEEEEEEEceeeccCCCcceEeecc------------------------------------CC-CCCCHHHHHHHHHH
Q psy1760 71 DKYYEAIIHLGITTETGDIEGKIIDFN------------------------------------KN-IPNSIEIIEKILIN 113 (793)
Q Consensus 71 ~K~Y~~~~~~g~~t~t~d~~g~~~~~~------------------------------------~~-~~~t~~~~~~al~~ 113 (793)
+++|..+=..|..|...-+.+..+.++ +. ...|++|.+.|+.+
T Consensus 119 p~sFtgeD~~el~~hgs~avv~~~l~a~~~sg~~~ir~a~~geft~Raf~ngk~~Ltq~eg~~~lI~a~t~~q~~~Al~~ 198 (531)
T KOG1191|consen 119 PQSFTGEDVVELQTHGSSAVVVGVLTALGASGIPGIRLAEPGEFTRRAFLNGKLDLTQAEGIIDLIVAETESQRRAALDE 198 (531)
T ss_pred CceeeeeeeEEEEEecCccchhhHHHHhhhccCCCccccCchhhhhhhhhccccchhhhcChhhhhhhhhHhhhhhhhhh
Confidence 778887777776665443322211110 01 12367788888888
Q ss_pred hHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCCc-eeeEEeccchhHHHHHHHHHhhhhcc
Q psy1760 114 FHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPY-LTLRIHCSKGTYIRVLSEDIGKMLGC 192 (793)
Q Consensus 114 ~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~~-~~~~~~~s~gtyIRsL~~dIg~~L~~ 192 (793)
+.|+..-+--.|.. ....+.......+||.++. ++.......=--+.+|..++...+..
T Consensus 199 v~g~~~~l~~~~r~--------------------~lIe~~a~l~a~idf~e~~~l~~~~t~~~~~~~~~l~d~v~s~l~~ 258 (531)
T KOG1191|consen 199 VAGEALALCFGWRK--------------------ILIEALAGLEARIDFEEERPLEEIETVEIFIESLSLLDDVLSHLNK 258 (531)
T ss_pred hcchhHHhhhhHHH--------------------HHHHHHhccceeechhhcCchhhccchhhhhHHHHHHHHHHHHHHh
Confidence 88877666555555 2233333444557776542 22111222212445566777777766
Q ss_pred chHHHHHHhhcccccccccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC
Q psy1760 193 GAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG 272 (793)
Q Consensus 193 ~a~l~~LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~ 272 (793)
......+++ | .+|+|+|.||+|||||+|+|.+. |...+..+.|+|+++..+.++.+|
T Consensus 259 ~~~~e~lq~---g-----l~iaIvGrPNvGKSSLlNaL~~~---------------drsIVSpv~GTTRDaiea~v~~~G 315 (531)
T KOG1191|consen 259 ADEIERLQS---G-----LQIAIVGRPNVGKSSLLNALSRE---------------DRSIVSPVPGTTRDAIEAQVTVNG 315 (531)
T ss_pred hhhHHHhhc---C-----CeEEEEcCCCCCHHHHHHHHhcC---------------CceEeCCCCCcchhhheeEeecCC
Confidence 555655553 2 48999999999999999999987 778889999999999999999999
Q ss_pred eEEEEecCCCccc-chHHH--------HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcC------------CccEEE
Q psy1760 273 TRINIIDTPGHAD-FGGEV--------ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG------------FKPIVV 331 (793)
Q Consensus 273 ~~i~iiDTPGh~d-f~~ev--------~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~------------ip~Ivv 331 (793)
+++.|+||+|..+ -.+.+ .+.+..||.+++|+||.++...+...+.+.+...+ .|.|++
T Consensus 316 ~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~ 395 (531)
T KOG1191|consen 316 VPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILV 395 (531)
T ss_pred eEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEE
Confidence 9999999999877 22222 23478899999999998887777777666666533 356788
Q ss_pred EecccCCCCChhhhHhHHHHHHhhhcccccccCccEE-EeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 332 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVI-YTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 332 INKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi-~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
+||+|+...- .+.......+ ..+ ...-.+|++ ++|++++. |+..|.++|.+.+
T Consensus 396 ~nk~D~~s~~-~~~~~~~~~~---~~~-~~~~~~~i~~~vs~~tke----------g~~~L~~all~~~ 449 (531)
T KOG1191|consen 396 ANKSDLVSKI-PEMTKIPVVY---PSA-EGRSVFPIVVEVSCTTKE----------GCERLSTALLNIV 449 (531)
T ss_pred echhhccCcc-ccccCCceec---ccc-ccCcccceEEEeeechhh----------hHHHHHHHHHHHH
Confidence 8888875420 0000000000 011 011134444 49999987 8888888887755
No 169
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.60 E-value=2.3e-15 Score=144.40 Aligned_cols=149 Identities=30% Similarity=0.342 Sum_probs=103.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+... .+.+..++++.......+.+++ ..+.+|||||+.++..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 65 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK----------------FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA 65 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC----------------CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH
Confidence 479999999999999999998652 1123334666666666677777 7899999999999876
Q ss_pred HHHHHhhccCcEEEEEeCC-------CCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccc
Q psy1760 289 EVERILSMVDNVLLLIDAV-------EGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 361 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~-------~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~ 361 (793)
......+.++.++.++|.. ++...+...+++.+.. +.|+++++||+|+...+ ...+....+..+.
T Consensus 66 ~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~---- 137 (161)
T TIGR00231 66 IRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK---LKTHVAFLFAKLN---- 137 (161)
T ss_pred HHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch---hhHHHHHHHhhcc----
Confidence 6655566666666555554 3332333334444433 88999999999997643 2333333333322
Q ss_pred ccCccEEEeecCCCCcccccccccCCchhhHHHH
Q psy1760 362 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAI 395 (793)
Q Consensus 362 ~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I 395 (793)
..|++++||++|. |+..+++.|
T Consensus 138 --~~~~~~~sa~~~~----------gv~~~~~~l 159 (161)
T TIGR00231 138 --GEPIIPLSAETGK----------NIDSAFKIV 159 (161)
T ss_pred --CCceEEeecCCCC----------CHHHHHHHh
Confidence 2468999999998 888888876
No 170
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.60 E-value=4e-15 Score=145.95 Aligned_cols=156 Identities=17% Similarity=0.211 Sum_probs=101.6
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
.|+++|++|+|||||+++|+.......... +. + +.......+......+.+|||||+.+|.....
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~----t~----------~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~ 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDP----TI----------E-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCC----ch----------h-hhEEEEEEECCEEEEEEEEECCCcccchHHHH
Confidence 689999999999999999986532111000 00 0 00111112222236788999999999998888
Q ss_pred HHhhccCcEEEEEeCCCCCCchhH-HHHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQTR-FVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
..++.+|++++|+|+.+....+.. .++..+. ..+.|+++|+||+|+...+.. ..++....... ...|
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~-~~~~~~~~~~~-------~~~~ 138 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVV-STEEGKELARQ-------WGCP 138 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceE-cHHHHHHHHHH-------cCCE
Confidence 899999999999999874222111 1222222 236799999999998754211 11222222211 2367
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
++++||++|. |++++++.|.+.+.
T Consensus 139 ~~~~Sa~~~~----------~i~~l~~~l~~~~~ 162 (164)
T smart00173 139 FLETSAKERV----------NVDEAFYDLVREIR 162 (164)
T ss_pred EEEeecCCCC----------CHHHHHHHHHHHHh
Confidence 9999999998 99999999987664
No 171
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.60 E-value=1.1e-14 Score=139.69 Aligned_cols=154 Identities=27% Similarity=0.282 Sum_probs=108.5
Q ss_pred eeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec-CeEEEEecCCCcccchH-----
Q psy1760 215 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-GTRINIIDTPGHADFGG----- 288 (793)
Q Consensus 215 IiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~-~~~i~iiDTPGh~df~~----- 288 (793)
++|++|+|||||+++|.+.... .....++.|.........+. +..+.+|||||+.++..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~ 65 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVA---------------IVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER 65 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccc---------------ccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH
Confidence 5799999999999999765211 12333455655555555555 77999999999887653
Q ss_pred --HHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 289 --EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 289 --ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
.....++.+|++++|+|+..........+.......+.|.++|+||+|+..........+ ...... ......|
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~---~~~~~~--~~~~~~~ 140 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLE---LRLLIL--LLLLGLP 140 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHH---HHHhhc--ccccCCc
Confidence 344578899999999999988766666556677778999999999999875432111110 000011 1122568
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
++++||+++. |++.+++.|.+.
T Consensus 141 ~~~~sa~~~~----------~v~~l~~~l~~~ 162 (163)
T cd00880 141 VIAVSALTGE----------GIDELREALIEA 162 (163)
T ss_pred eEEEeeeccC----------CHHHHHHHHHhh
Confidence 9999999998 899999988654
No 172
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.59 E-value=5.2e-15 Score=148.25 Aligned_cols=144 Identities=21% Similarity=0.205 Sum_probs=101.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCccc-----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD----- 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d----- 285 (793)
.+|+|+|++|+|||||+++|++..... ......|.|..... +.++ ..+.+|||||+.+
T Consensus 19 ~~i~ivG~~~~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~--~~~~-~~~~liDtpG~~~~~~~~ 81 (179)
T TIGR03598 19 PEIAFAGRSNVGKSSLINALTNRKKLA--------------RTSKTPGRTQLINF--FEVN-DGFRLVDLPGYGYAKVSK 81 (179)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCcc--------------cccCCCCcceEEEE--EEeC-CcEEEEeCCCCccccCCh
Confidence 489999999999999999998652110 01122344544332 2233 3799999999632
Q ss_pred -----chHHHHHHhh---ccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCC-ChhhhHhHHHHHHhhh
Q psy1760 286 -----FGGEVERILS---MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-RPEWVVDATFDLFDKL 356 (793)
Q Consensus 286 -----f~~ev~~~l~---~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a-~~~~v~~~i~~~~~~l 356 (793)
|...+...++ .+|++++|+|+..+...++..+++.+...+.|+++|+||+|+... +.....+++++.+...
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~ 161 (179)
T TIGR03598 82 EEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD 161 (179)
T ss_pred hHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc
Confidence 3333334443 468999999999988888888888888889999999999999643 2344556666665443
Q ss_pred cccccccCccEEEeecCCCC
Q psy1760 357 CATEEQLDFPVIYTSALHGY 376 (793)
Q Consensus 357 ~~~~~~l~~Pvi~~SA~~g~ 376 (793)
+ ..++++++||++|+
T Consensus 162 ~-----~~~~v~~~Sa~~g~ 176 (179)
T TIGR03598 162 A-----DDPSVQLFSSLKKT 176 (179)
T ss_pred c-----CCCceEEEECCCCC
Confidence 2 23579999999998
No 173
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.59 E-value=3.7e-15 Score=150.26 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=107.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
..|+++|+.|+|||||+++|...... . ...|+......+.+++..+.++||||+.+|....
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~~~~--~-----------------~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~ 80 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDDRLA--Q-----------------HVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLW 80 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--c-----------------cCCccCcceEEEEECCEEEEEEECCCCHHHHHHH
Confidence 57899999999999999999754210 0 0012222334566778999999999999988888
Q ss_pred HHHhhccCcEEEEEeCCCCCC-chhHHHHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcc-------
Q psy1760 291 ERILSMVDNVLLLIDAVEGPM-PQTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA------- 358 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~-~qt~~~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~------- 358 (793)
...++.+|++++|+|+.+.-. ......+.... ..+.|+++|+||+|+..+.. .+++++.+.....
T Consensus 81 ~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~ 157 (190)
T cd00879 81 KDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVS---EEELRQALGLYGTTTGKGVS 157 (190)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcC---HHHHHHHhCccccccccccc
Confidence 888999999999999986421 11222333222 24689999999999865322 2344444432111
Q ss_pred --cccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 359 --TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 359 --~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
......++++.+||++|. |+++++++|.+++
T Consensus 158 ~~~~~~~~~~~~~~Sa~~~~----------gv~e~~~~l~~~~ 190 (190)
T cd00879 158 LKVSGIRPIEVFMCSVVKRQ----------GYGEAFRWLSQYL 190 (190)
T ss_pred ccccCceeEEEEEeEecCCC----------ChHHHHHHHHhhC
Confidence 011123578999999998 9999999997653
No 174
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.59 E-value=1e-14 Score=142.63 Aligned_cols=152 Identities=17% Similarity=0.222 Sum_probs=101.3
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec----CeEEEEecCCCcccch
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN----GTRINIIDTPGHADFG 287 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~----~~~i~iiDTPGh~df~ 287 (793)
+|+++|.+++|||||+++|....... +..+.+..+.....+.++ ...++||||||+.+|.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 65 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTK----------------DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFD 65 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC----------------CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHH
Confidence 58999999999999999998542110 001111122222223333 5689999999999999
Q ss_pred HHHHHHhhccCcEEEEEeCCCCCCchhHHHH-HHHHH--cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 288 GEVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKALK--LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 288 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l-~~~~~--~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
......++.+|++++|+|+.+....+....| ..+.. .++|+++|+||+|+...+. ...++...+.. ...
T Consensus 66 ~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-v~~~~~~~~~~-------~~~ 137 (162)
T cd04106 66 AITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAV-ITNEEAEALAK-------RLQ 137 (162)
T ss_pred HhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccC-CCHHHHHHHHH-------HcC
Confidence 8888999999999999999874322222222 22221 3789999999999865321 11122222222 224
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
+|++++||++|. |++++++.|.+
T Consensus 138 ~~~~~~Sa~~~~----------~v~~l~~~l~~ 160 (162)
T cd04106 138 LPLFRTSVKDDF----------NVTELFEYLAE 160 (162)
T ss_pred CeEEEEECCCCC----------CHHHHHHHHHH
Confidence 689999999998 89999998864
No 175
>PRK11058 GTPase HflX; Provisional
Probab=99.59 E-value=1.1e-14 Score=164.31 Aligned_cols=151 Identities=18% Similarity=0.176 Sum_probs=103.7
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCe-EEEEecCCCcccc--hH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT-RINIIDTPGHADF--GG 288 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~-~i~iiDTPGh~df--~~ 288 (793)
.|+++|.+|+|||||+|+|++.. .. .....|+|++.....+.+.+. .+.|+||||+... ..
T Consensus 199 ~ValVG~~NaGKSSLlN~Lt~~~---------------~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~ 262 (426)
T PRK11058 199 TVSLVGYTNAGKSTLFNRITEAR---------------VY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHD 262 (426)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc---------------ee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHH
Confidence 68999999999999999997541 11 233446677777777777664 8999999998432 11
Q ss_pred H------HHHHhhccCcEEEEEeCCCCCCchhH----HHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcc
Q psy1760 289 E------VERILSMVDNVLLLIDAVEGPMPQTR----FVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA 358 (793)
Q Consensus 289 e------v~~~l~~aD~allVVDa~~g~~~qt~----~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~ 358 (793)
. +...+..||++|+|+|+++....... .++..+...++|+|+|+||+|+.... ....+ .. .
T Consensus 263 lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~-~~~~~----~~-~--- 333 (426)
T PRK11058 263 LVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF-EPRID----RD-E--- 333 (426)
T ss_pred HHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch-hHHHH----HH-h---
Confidence 1 22346789999999999886433322 23344434468999999999986421 11111 00 0
Q ss_pred cccccCcc-EEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 359 TEEQLDFP-VIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 359 ~~~~l~~P-vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
...| ++++||++|. |++.|++.|.+.++.
T Consensus 334 ----~~~~~~v~ISAktG~----------GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 334 ----ENKPIRVWLSAQTGA----------GIPLLFQALTERLSG 363 (426)
T ss_pred ----cCCCceEEEeCCCCC----------CHHHHHHHHHHHhhh
Confidence 1234 5889999998 999999999888754
No 176
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.58 E-value=1.1e-14 Score=142.30 Aligned_cols=155 Identities=19% Similarity=0.209 Sum_probs=106.6
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~e 289 (793)
+|+++|++|+|||||+++|+..... ....+.++.......+.+++ ..+++|||||+..|...
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 65 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFS----------------EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSI 65 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHH
Confidence 6899999999999999999855211 11112223333334455555 57899999999999888
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchhHH-HHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQTRF-VTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt~~-~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
....++.+|++++|+|+.+....+... ++..... .++|+++|+||+|+...+ ....+...+... ...+
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~-~~~~~~~~~~~~-------~~~~ 137 (164)
T smart00175 66 TSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQR-QVSREEAEAFAE-------EHGL 137 (164)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccccc-CCCHHHHHHHHH-------HcCC
Confidence 888999999999999998754333322 2233333 368999999999986532 111222222221 2246
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
+++++||++|. |++++++.|.+.++
T Consensus 138 ~~~e~Sa~~~~----------~i~~l~~~i~~~~~ 162 (164)
T smart00175 138 PFFETSAKTNT----------NVEEAFEELAREIL 162 (164)
T ss_pred eEEEEeCCCCC----------CHHHHHHHHHHHHh
Confidence 79999999998 99999999987764
No 177
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.58 E-value=9.4e-15 Score=140.90 Aligned_cols=153 Identities=20% Similarity=0.233 Sum_probs=104.5
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+|+++|.+++|||||+++|+....... .....+.+..............+++|||||+..|.....
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 67 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN--------------YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITP 67 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc--------------cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHH
Confidence 689999999999999999976522211 011122233332333333457889999999999999999
Q ss_pred HHhhccCcEEEEEeCCCCCCchh-HHHHHHHHHc---CCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQT-RFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~~---~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
..++.+|++++|+|+.+...... ..++...... +.|.++++||+|..... ....+++.++... ..+++
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~-------~~~~~ 139 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQR-QVSTEEAQQFAKE-------NGLLF 139 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccc-cccHHHHHHHHHH-------cCCeE
Confidence 99999999999999987432222 2334444443 48999999999996221 1223344443322 35689
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHH
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAIL 396 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~ 396 (793)
+.+||+++. |++.++++|.
T Consensus 140 ~~~sa~~~~----------~i~~~~~~i~ 158 (159)
T cd00154 140 FETSAKTGE----------NVEELFQSLA 158 (159)
T ss_pred EEEecCCCC----------CHHHHHHHHh
Confidence 999999998 8999998875
No 178
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.58 E-value=8.2e-15 Score=142.67 Aligned_cols=152 Identities=15% Similarity=0.143 Sum_probs=101.1
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~e 289 (793)
+|+++|.+|+|||||+++|+......... .++.......+.+++ ..+++|||||+..|...
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~~~~~-----------------~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l 65 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFVDEYD-----------------PTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAM 65 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcCCcC-----------------CcchheEEEEEEECCEEEEEEEEECCCCcchHHH
Confidence 68999999999999999998642111000 000001112233333 56889999999999999
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchhH-HHHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQTR-FVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
+...++.+|++++|+|..+....+.. .++.... ..+.|+++|.||+|+.... ...++..+.... ..
T Consensus 66 ~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~-------~~ 136 (162)
T cd04138 66 RDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAART--VSSRQGQDLAKS-------YG 136 (162)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccce--ecHHHHHHHHHH-------hC
Confidence 99999999999999998864222221 2222222 2478999999999987532 112233333222 24
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
+|++++||++|. |++++++.|.+.+
T Consensus 137 ~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 161 (162)
T cd04138 137 IPYIETSAKTRQ----------GVEEAFYTLVREI 161 (162)
T ss_pred CeEEEecCCCCC----------CHHHHHHHHHHHh
Confidence 579999999998 9999999987653
No 179
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.58 E-value=1.1e-14 Score=143.48 Aligned_cols=154 Identities=21% Similarity=0.173 Sum_probs=104.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+++++|++|+|||||+++|....... .....++.+.....+.+.+ ..+.+|||||+.+|..
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 71 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPP----------------GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRS 71 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC----------------CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 689999999999999999997431110 0111222233344455666 4578899999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH-HHHH---HHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR-FVTR---KALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~-~~l~---~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.....++.+|++++|+|+.++...+.. .++. .....++|.++|+||+|+...+ ++..++...+... ..
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~--~i~~~~~~~~~~~------~~ 143 (169)
T cd04114 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERR--EVSQQRAEEFSDA------QD 143 (169)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc--ccCHHHHHHHHHH------cC
Confidence 889999999999999999875332222 2222 2223468889999999986432 2222222222221 12
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
.+++.+||++|. |++++++.|.++
T Consensus 144 ~~~~~~Sa~~~~----------gv~~l~~~i~~~ 167 (169)
T cd04114 144 MYYLETSAKESD----------NVEKLFLDLACR 167 (169)
T ss_pred CeEEEeeCCCCC----------CHHHHHHHHHHH
Confidence 568999999998 999999998764
No 180
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.58 E-value=9e-15 Score=149.00 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=103.3
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~e 289 (793)
+|+++|++|+|||||+++|+....... ...++.......+.+++ ..++||||||+.+|...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 63 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPK-----------------YRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAM 63 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc-----------------CCCchhhheeEEEEECCEEEEEEEEECCCchhhhHH
Confidence 478999999999999999986521100 00011111123344555 67899999999999887
Q ss_pred HHHHhhccCcEEEEEeCCCCCCch-hHHHHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
....+..+|++|+|+|+++....+ ...++..+. ..++|+|+|+||+|+.........++..+.+. ....
T Consensus 64 ~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~------~~~~ 137 (198)
T cd04147 64 RKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE------LDWN 137 (198)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH------hhcC
Confidence 788899999999999998742222 111222222 24789999999999865311111111111111 1123
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
.+++.+||++|. |+++++++|.+.+..+
T Consensus 138 ~~~~~~Sa~~g~----------gv~~l~~~l~~~~~~~ 165 (198)
T cd04147 138 CGFVETSAKDNE----------NVLEVFKELLRQANLP 165 (198)
T ss_pred CcEEEecCCCCC----------CHHHHHHHHHHHhhcc
Confidence 578999999998 9999999998877543
No 181
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.58 E-value=8.2e-15 Score=145.28 Aligned_cols=157 Identities=17% Similarity=0.158 Sum_probs=105.2
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+|+++|.+++|||||+++|.... +.. ...|+......+.+++..+++|||||+..|...+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~~~-----------------~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~ 61 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--FMQ-----------------PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWK 61 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--CCC-----------------cCCcCceeEEEEEECCEEEEEEECCCChhcchHHH
Confidence 47899999999999999997541 100 00122222234567789999999999999988888
Q ss_pred HHhhccCcEEEEEeCCCCC-CchhHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 292 RILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
..++.+|++++|+|+++.. .......+..+.. .+.|+++|.||+|+.... ..+++.+.+. +........++
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~-~~~~~~~~~~~ 137 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGAL---SVEEMTELLS-LHKLCCGRSWY 137 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCC---CHHHHHHHhC-CccccCCCcEE
Confidence 8899999999999998642 1222233333332 247889999999996531 1233333321 11100011246
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
++++||++|. |+++++++|.+.++.
T Consensus 138 ~~~~Sa~~g~----------gv~~~f~~l~~~~~~ 162 (169)
T cd04158 138 IQGCDARSGM----------GLYEGLDWLSRQLVA 162 (169)
T ss_pred EEeCcCCCCC----------CHHHHHHHHHHHHhh
Confidence 7889999998 999999999877654
No 182
>PRK04213 GTP-binding protein; Provisional
Probab=99.58 E-value=1.4e-14 Score=147.63 Aligned_cols=158 Identities=24% Similarity=0.277 Sum_probs=104.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCccc-----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD----- 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d----- 285 (793)
.+|+++|.+|+|||||+++|.+... ..+..+|+|+.... +.++ .+++|||||+.+
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~~~~~----------------~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~~~~~~ 69 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELTGKKV----------------RVGKRPGVTRKPNH--YDWG--DFILTDLPGFGFMSGVP 69 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC----------------ccCCCCceeeCceE--Eeec--ceEEEeCCccccccccC
Confidence 5899999999999999999975421 12234577765433 3333 689999999633
Q ss_pred ------chHHHH----HHhhccCcEEEEEeCCCC-----------CCchhHHHHHHHHHcCCccEEEEecccCCCCChhh
Q psy1760 286 ------FGGEVE----RILSMVDNVLLLIDAVEG-----------PMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEW 344 (793)
Q Consensus 286 ------f~~ev~----~~l~~aD~allVVDa~~g-----------~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~ 344 (793)
|...+. +.+..+|++++|+|+... ...++.+++..+...++|+++|+||+|+.+++ .+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~-~~ 148 (201)
T PRK04213 70 KEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR-DE 148 (201)
T ss_pred HHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH-HH
Confidence 222211 234457899999998642 12344566777777899999999999997543 22
Q ss_pred hHhHHHHHHhhhccc--ccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCc
Q psy1760 345 VVDATFDLFDKLCAT--EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 403 (793)
Q Consensus 345 v~~~i~~~~~~l~~~--~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 403 (793)
..+++.+.+ +.. ......|++++||++| |++++++.|.+.++.-.
T Consensus 149 ~~~~~~~~~---~~~~~~~~~~~~~~~~SA~~g-----------gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 149 VLDEIAERL---GLYPPWRQWQDIIAPISAKKG-----------GIEELKEAIRKRLHEAK 195 (201)
T ss_pred HHHHHHHHh---cCCccccccCCcEEEEecccC-----------CHHHHHHHHHHhhcCcc
Confidence 333333332 221 0111247899999997 56779999988876543
No 183
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.58 E-value=9.4e-15 Score=144.69 Aligned_cols=160 Identities=20% Similarity=0.274 Sum_probs=105.1
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+|+++|.+++|||||+++|... +.. . .. .|+......+.+++..++++||||+..|.....
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~~~--~----------~~----~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---IPK--K----------VA----PTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWV 61 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---CCc--c----------cc----CcccceEEEEEECCEEEEEEECCCcHHHHHHHH
Confidence 4789999999999999999753 110 0 01 112222345667889999999999999998888
Q ss_pred HHhhccCcEEEEEeCCCCCC-chhHHHHHHHHH----cCCccEEEEecccCCCCC-hhhhHhHHHHHHhhhcccccccCc
Q psy1760 292 RILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~----~~ip~IvvINKiD~~~a~-~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
..++.+|++|+|+|+++... ......+..+.. .+.|+++|+||+|+.+++ ..++.+.+ + +..+. ......+
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~-~-l~~~~-~~~~~~~ 138 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYL-S-LEKLV-NENKSLC 138 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhc-C-ccccc-CCCCceE
Confidence 99999999999999987432 223334444432 378999999999998764 22222221 0 11111 1112346
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
+++.+||++|.+... ..|+.+-|++|..
T Consensus 139 ~~~~~Sa~~g~~~~~----~~g~~~~~~wl~~ 166 (167)
T cd04161 139 HIEPCSAIEGLGKKI----DPSIVEGLRWLLA 166 (167)
T ss_pred EEEEeEceeCCCCcc----ccCHHHHHHHHhc
Confidence 789999999842110 1278888888853
No 184
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.57 E-value=1.3e-14 Score=143.23 Aligned_cols=155 Identities=19% Similarity=0.203 Sum_probs=101.7
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~e 289 (793)
+|+++|++|+|||||+++|+......... ...|.+ .....+.+.+ ..+++|||||+.+|...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~--------------~t~~~~--~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 65 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYK--------------ATIGAD--FLTKEVTVDDKLVTLQIWDTAGQERFQSL 65 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcC--------------CccceE--EEEEEEEECCEEEEEEEEeCCChHHHHhH
Confidence 68999999999999999998652111000 001111 1222334444 46779999999999888
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchhHHHH-HH-HHH------cCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccc
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQTRFVT-RK-ALK------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 361 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt~~~l-~~-~~~------~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~ 361 (793)
....++.+|++|+|+|+.+....+....| .. ... .++|+++|+||+|+...+ ....+++.......+
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~---- 140 (172)
T cd01862 66 GVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKR-QVSTKKAQQWCQSNG---- 140 (172)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccccc-ccCHHHHHHHHHHcC----
Confidence 88899999999999999875322222112 11 111 268999999999997422 112233333332222
Q ss_pred ccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 362 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 362 ~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
..+++++||++|. |++.+++.|.+.+
T Consensus 141 --~~~~~~~Sa~~~~----------gv~~l~~~i~~~~ 166 (172)
T cd01862 141 --NIPYFETSAKEAI----------NVEQAFETIARKA 166 (172)
T ss_pred --CceEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 2579999999998 9999999987654
No 185
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.57 E-value=1.4e-14 Score=145.82 Aligned_cols=159 Identities=17% Similarity=0.144 Sum_probs=107.3
Q ss_pred ccccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccch
Q psy1760 208 TLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 287 (793)
Q Consensus 208 ~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 287 (793)
..+.+|+++|.+|+|||||+++|....... .. .|.......+.+++.+++++||||+..+.
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~---------------~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 75 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ---------------HQ----PTQHPTSEELAIGNIKFTTFDLGGHQQAR 75 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc---------------cC----CccccceEEEEECCEEEEEEECCCCHHHH
Confidence 444689999999999999999997542110 00 01222234456678999999999999888
Q ss_pred HHHHHHhhccCcEEEEEeCCCCCC-chhHHHHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhccc---
Q psy1760 288 GEVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT--- 359 (793)
Q Consensus 288 ~ev~~~l~~aD~allVVDa~~g~~-~qt~~~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~--- 359 (793)
......+..+|++|+|+|+++... ......+..+. ..+.|+++|+||+|++.+.. .+++.+.+.-....
T Consensus 76 ~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~---~~~i~~~l~l~~~~~~~ 152 (184)
T smart00178 76 RLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAAS---EDELRYALGLTNTTGSK 152 (184)
T ss_pred HHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCC---HHHHHHHcCCCcccccc
Confidence 888888999999999999986421 22222333332 25789999999999875421 23333333211100
Q ss_pred --ccccCccEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 360 --EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 360 --~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
......-++++||++|. |+++++++|.++
T Consensus 153 ~~~~~~~~~i~~~Sa~~~~----------g~~~~~~wl~~~ 183 (184)
T smart00178 153 GKVGVRPLEVFMCSVVRRM----------GYGEGFKWLSQY 183 (184)
T ss_pred cccCCceeEEEEeecccCC----------ChHHHHHHHHhh
Confidence 01113448999999998 999999999764
No 186
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.57 E-value=1.3e-14 Score=162.20 Aligned_cols=158 Identities=19% Similarity=0.261 Sum_probs=111.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC-eEEEEecCCCccc----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-TRINIIDTPGHAD---- 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~-~~i~iiDTPGh~d---- 285 (793)
..|+|+|.||+|||||+|+|+.... .+...+++|+......+.+.+ ..+.|+||||+.+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~----------------~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~ 223 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKP----------------KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASE 223 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcc----------------cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccc
Confidence 3689999999999999999975421 234456788888888888875 5699999999754
Q ss_pred ---chHHHHHHhhccCcEEEEEeCCC----CCCchhHHHHHHHHHc-----CCccEEEEecccCCCCChhhhHhHHHHHH
Q psy1760 286 ---FGGEVERILSMVDNVLLLIDAVE----GPMPQTRFVTRKALKL-----GFKPIVVVNKIDRSNARPEWVVDATFDLF 353 (793)
Q Consensus 286 ---f~~ev~~~l~~aD~allVVDa~~----g~~~qt~~~l~~~~~~-----~ip~IvvINKiD~~~a~~~~v~~~i~~~~ 353 (793)
....+.+.+..+|++++|+|+.. .+..+...+++.+..+ +.|.|+|+||+|+... .++.+.+..+.
T Consensus 224 ~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~~l~ 301 (390)
T PRK12298 224 GAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAKAIV 301 (390)
T ss_pred hhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHHHHH
Confidence 33455677889999999999872 2223333444444442 5799999999998643 22222222222
Q ss_pred hhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 354 DKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 354 ~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
..+. ...+++++||+++. |+++|++.|.+.++.
T Consensus 302 ~~~~-----~~~~Vi~ISA~tg~----------GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 302 EALG-----WEGPVYLISAASGL----------GVKELCWDLMTFIEE 334 (390)
T ss_pred HHhC-----CCCCEEEEECCCCc----------CHHHHHHHHHHHhhh
Confidence 2111 12368999999998 999999999988864
No 187
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.57 E-value=1.9e-14 Score=157.74 Aligned_cols=157 Identities=20% Similarity=0.205 Sum_probs=110.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee-cCeEEEEecCCCccc----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGHAD---- 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~-~~~~i~iiDTPGh~d---- 285 (793)
..|+|+|.||+|||||+++|...... .....++|+.+....+.+ ++..+.++||||+.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~----------------va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~ 222 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPK----------------IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASE 222 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCc----------------cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCc
Confidence 57899999999999999999754211 223356788888888888 567899999999753
Q ss_pred ---chHHHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH-----cCCccEEEEecccCCCCChhhhHhHHHHHHhhh
Q psy1760 286 ---FGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 356 (793)
Q Consensus 286 ---f~~ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~-----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l 356 (793)
+.....+.+..+|++|+|+|+++....+. ..+...+.. .+.|.|+|+||+|+..+. ....+..+.+.
T Consensus 223 ~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~--~~~~~~~~~~~-- 298 (335)
T PRK12299 223 GAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE--EEREKRAALEL-- 298 (335)
T ss_pred cccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch--hHHHHHHHHHH--
Confidence 34455667788999999999986432222 223333433 367899999999997542 12211111111
Q ss_pred cccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 357 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 357 ~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
.....+++++||+++. |+++|+++|.+.++.
T Consensus 299 ----~~~~~~i~~iSAktg~----------GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 299 ----AALGGPVFLISAVTGE----------GLDELLRALWELLEE 329 (335)
T ss_pred ----HhcCCCEEEEEcCCCC----------CHHHHHHHHHHHHHh
Confidence 1123679999999998 999999999887754
No 188
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.57 E-value=1.4e-14 Score=143.18 Aligned_cols=157 Identities=17% Similarity=0.136 Sum_probs=105.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
-+|+++|++|+|||||+++++........ ....|.+.......+......++||||||+..|....
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 70 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------------DLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSIT 70 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC--------------CCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 48999999999999999999865221110 0112333333333333334678999999999888888
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHH-HHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRF-VTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~-~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
...++.+|++|+|+|+++....+... ++..+.. .+.|+++|.||+|+...+ ....++...+... ..++
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~-------~~~~ 142 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRR-EVSYEEGEAFAKE-------HGLI 142 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc-CCCHHHHHHHHHH-------cCCE
Confidence 88899999999999998643322222 2333333 367899999999987432 1122333333322 2357
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
++++||+++. |++++++.+.+.+
T Consensus 143 ~~e~Sa~~~~----------~i~~~~~~~~~~~ 165 (168)
T cd01866 143 FMETSAKTAS----------NVEEAFINTAKEI 165 (168)
T ss_pred EEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 8999999998 8999998887654
No 189
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.57 E-value=1.1e-14 Score=142.35 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=103.1
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+|+++|++|+|||||+++|+....... .....|.+.......+......+.+|||||+..|.....
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 67 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD--------------LAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTS 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc--------------cCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhH
Confidence 689999999999999999985522110 112223333222222332346789999999999988888
Q ss_pred HHhhccCcEEEEEeCCCCCCchhHH-HHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQTRF-VTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~qt~~-~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
..++.+|++++|+|+++....+... ++..+. ..+.|.++|+||+|+..... ..++..++.. ...+|
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~--~~~~~~~~~~-------~~~~~ 138 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREV--TREEGLKFAR-------KHNML 138 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccccc--CHHHHHHHHH-------HcCCE
Confidence 8899999999999998643322222 222222 34678899999999974321 1222222221 12578
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
++++||++|. |++++++.+.+.
T Consensus 139 ~~~~Sa~~~~----------gi~~~~~~~~~~ 160 (161)
T cd01863 139 FIETSAKTRD----------GVQQAFEELVEK 160 (161)
T ss_pred EEEEecCCCC----------CHHHHHHHHHHh
Confidence 9999999998 999999988764
No 190
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.57 E-value=3.7e-14 Score=137.98 Aligned_cols=165 Identities=22% Similarity=0.230 Sum_probs=125.4
Q ss_pred ccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC-eEEEEecCCCcccchH
Q psy1760 210 DKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-TRINIIDTPGHADFGG 288 (793)
Q Consensus 210 e~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~-~~i~iiDTPGh~df~~ 288 (793)
+-.|+++|+.++||||++.++............ ........|.+|+.....++.+++ ..+.|+|||||..|.-
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~------~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADA------SSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKF 83 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccc------cccccccccceeEeecccceEEcCcceEEEecCCCcHHHHH
Confidence 357999999999999999999876432211100 000111145588888888888776 8999999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcC-CccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG-FKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~-ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
.++-.++.++++|++||++.+.....++.+....... +|.+|++||.|+.++.+.+.+.++.++ - .+..|+
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~---~-----~~~~~v 155 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKL---E-----LLSVPV 155 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHh---c-----cCCCce
Confidence 9999999999999999999977666677777777777 899999999999998765544443332 1 146799
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
+..+|.+++ +..+.++.+..+
T Consensus 156 i~~~a~e~~----------~~~~~L~~ll~~ 176 (187)
T COG2229 156 IEIDATEGE----------GARDQLDVLLLK 176 (187)
T ss_pred eeeecccch----------hHHHHHHHHHhh
Confidence 999999988 777777777655
No 191
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.57 E-value=9.7e-15 Score=144.49 Aligned_cols=150 Identities=23% Similarity=0.273 Sum_probs=100.1
Q ss_pred eeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec-CeEEEEecCCCccc-------c
Q psy1760 215 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-GTRINIIDTPGHAD-------F 286 (793)
Q Consensus 215 IiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~-~~~i~iiDTPGh~d-------f 286 (793)
++|++|+|||||+++|.+... ......++|+......+.++ +..+++|||||+.+ +
T Consensus 1 iiG~~~~GKStll~~l~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 64 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP----------------KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGL 64 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc----------------cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCc
Confidence 579999999999999986521 12233456666666667788 89999999999843 2
Q ss_pred hHHHHHHhhccCcEEEEEeCCCCC-----Cc--hhHHHHHHHH----------HcCCccEEEEecccCCCCChhhhHhHH
Q psy1760 287 GGEVERILSMVDNVLLLIDAVEGP-----MP--QTRFVTRKAL----------KLGFKPIVVVNKIDRSNARPEWVVDAT 349 (793)
Q Consensus 287 ~~ev~~~l~~aD~allVVDa~~g~-----~~--qt~~~l~~~~----------~~~ip~IvvINKiD~~~a~~~~v~~~i 349 (793)
.....+.+..+|++++|+|+.+.. .. +...+...+. ..+.|+++|+||+|+...+. .....
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~~ 142 (176)
T cd01881 65 GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE--LEEEL 142 (176)
T ss_pred cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH--HHHHH
Confidence 224455678899999999998763 11 1122222222 14789999999999975421 11110
Q ss_pred HHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 350 FDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 350 ~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
... . ......+++++||+++. |++++++.+...
T Consensus 143 ~~~---~---~~~~~~~~~~~Sa~~~~----------gl~~l~~~l~~~ 175 (176)
T cd01881 143 VRE---L---ALEEGAEVVPISAKTEE----------GLDELIRAIYEL 175 (176)
T ss_pred HHH---H---hcCCCCCEEEEehhhhc----------CHHHHHHHHHhh
Confidence 000 0 01124579999999998 999999988654
No 192
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.56 E-value=1.6e-14 Score=143.95 Aligned_cols=153 Identities=20% Similarity=0.160 Sum_probs=104.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|...... . . ..|+......+.+++..+.++||||+..|....
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~--~-------------~----~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 76 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVV--H-------------T----SPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSW 76 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC--C-------------c----CCccccceEEEEECCeEEEEEECCCCHHHHHHH
Confidence 57999999999999999999753211 0 0 112222234566778999999999999998888
Q ss_pred HHHhhccCcEEEEEeCCCCCCc-hhHHHHHHH-HH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMP-QTRFVTRKA-LK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~-~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
...+..+|++|+|+|+++.... .....+..+ .. .++|+++++||+|+.+... .+++.+.+..... ....+
T Consensus 77 ~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~---~~~i~~~l~~~~~--~~~~~ 151 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT---PAEISESLGLTSI--RDHTW 151 (174)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCC---HHHHHHHhCcccc--cCCce
Confidence 8889999999999999875221 112222222 22 3579999999999875311 1222222211111 12346
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
+++++||++|. |++++++.|.+
T Consensus 152 ~~~~~SA~~g~----------gi~e~~~~l~~ 173 (174)
T cd04153 152 HIQGCCALTGE----------GLPEGLDWIAS 173 (174)
T ss_pred EEEecccCCCC----------CHHHHHHHHhc
Confidence 89999999998 99999998853
No 193
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.56 E-value=1.5e-14 Score=142.49 Aligned_cols=157 Identities=20% Similarity=0.180 Sum_probs=103.7
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+|+++|.+|+|||||+++|......... ...-|++..............+.+|||||+.+|.....
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~ 68 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSAF--------------VSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITT 68 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCC--------------CCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHH
Confidence 6899999999999999999864211100 00112222221222222346789999999999988888
Q ss_pred HHhhccCcEEEEEeCCCCCCch-hHHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
..++.+|++++|+|.++...-+ ...+++.+.. ...|+++|+||+|+...+.. ..++..++.. .+.+|+
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~~ 140 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVV-SSERGRQLAD-------QLGFEF 140 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccccc-CHHHHHHHHH-------HcCCEE
Confidence 8999999999999998642222 2233334433 25688999999999754321 1122222221 124579
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
+.+||++|. |+++|++.+.+.++
T Consensus 141 ~~~Sa~~~~----------gv~~l~~~l~~~~~ 163 (165)
T cd01865 141 FEASAKENI----------NVKQVFERLVDIIC 163 (165)
T ss_pred EEEECCCCC----------CHHHHHHHHHHHHH
Confidence 999999998 99999999987654
No 194
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.56 E-value=1.4e-14 Score=126.71 Aligned_cols=83 Identities=23% Similarity=0.422 Sum_probs=77.0
Q ss_pred ceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceee
Q psy1760 410 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC 489 (793)
Q Consensus 410 ~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~ 489 (793)
|.++||++.++++.|+++++||++|+|++||.|++... ....+|.+|+.+.|.++.++++|.|||||++.|++++.
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~----~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~~~~ 76 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTK----GKKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKDTA 76 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCC----CcEEEeeEEEEEcCCCceECCEeCCCCEEEEECCCCCc
Confidence 56899999999999999999999999999999998765 23578999999999999999999999999999999999
Q ss_pred cCCeEeC
Q psy1760 490 IGSTICD 496 (793)
Q Consensus 490 iGdtl~~ 496 (793)
+||||++
T Consensus 77 ~Gdtl~~ 83 (83)
T cd04088 77 TGDTLCD 83 (83)
T ss_pred cCCEeeC
Confidence 9999974
No 195
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.56 E-value=1.9e-14 Score=142.79 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=102.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++++|||||+++|.... +. . ....-|.++ ..+.+.+..+++|||||+..|....
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~--~~----------~---~~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~~~~ 70 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQ--SV----------T---TIPTVGFNV----ETVTYKNVKFNVWDVGGQDKIRPLW 70 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCC--Cc----------c---ccCCcccce----EEEEECCEEEEEEECCCCHHHHHHH
Confidence 489999999999999999996431 10 0 000112222 2344567899999999999998888
Q ss_pred HHHhhccCcEEEEEeCCCCC-CchhHHHHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGP-MPQTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
...++.+|++|+|+|+++.. .......+.... ..+.|+++|.||+|+.... ..+++.+.+..... ....+
T Consensus 71 ~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~--~~~~~ 145 (168)
T cd04149 71 RHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM---KPHEIQEKLGLTRI--RDRNW 145 (168)
T ss_pred HHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC---CHHHHHHHcCCCcc--CCCcE
Confidence 88899999999999998742 222223333332 1357999999999986531 12334333211111 11235
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
+++++||++|. |++++|++|.+
T Consensus 146 ~~~~~SAk~g~----------gv~~~~~~l~~ 167 (168)
T cd04149 146 YVQPSCATSGD----------GLYEGLTWLSS 167 (168)
T ss_pred EEEEeeCCCCC----------ChHHHHHHHhc
Confidence 78999999998 99999998854
No 196
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.56 E-value=1.4e-14 Score=143.51 Aligned_cols=154 Identities=18% Similarity=0.244 Sum_probs=104.0
Q ss_pred ccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH
Q psy1760 210 DKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 289 (793)
Q Consensus 210 e~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 289 (793)
..+++++|++|+|||||+++|.+.... ......|.++ ..+.+++..+.+|||||+..|...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~---------------~~~~t~g~~~----~~i~~~~~~~~~~D~~G~~~~~~~ 74 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDIS---------------HITPTQGFNI----KTVQSDGFKLNVWDIGGQRAIRPY 74 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCc---------------ccCCCCCcce----EEEEECCEEEEEEECCCCHHHHHH
Confidence 358999999999999999999754110 0111123322 345567899999999999999888
Q ss_pred HHHHhhccCcEEEEEeCCCCCC-chhHHHHHH----HHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 290 VERILSMVDNVLLLIDAVEGPM-PQTRFVTRK----ALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~-~qt~~~l~~----~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
+...++.+|++++|+|+.+... ......+.. ....++|+++++||+|+..... .+++.+.+.-... ....
T Consensus 75 ~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~i~~~l~~~~~--~~~~ 149 (173)
T cd04155 75 WRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP---AEEIAEALNLHDL--RDRT 149 (173)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC---HHHHHHHcCCccc--CCCe
Confidence 8888999999999999986321 122222222 2235789999999999865421 2223222211111 1113
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
++++.+||++|. |+++++++|.+
T Consensus 150 ~~~~~~Sa~~~~----------gi~~~~~~l~~ 172 (173)
T cd04155 150 WHIQACSAKTGE----------GLQEGMNWVCK 172 (173)
T ss_pred EEEEEeECCCCC----------CHHHHHHHHhc
Confidence 568899999998 99999999854
No 197
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.56 E-value=2.4e-14 Score=141.07 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=100.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|.+|+|||||+++++.... ... ...+. + ........+......+.+|||||+..|....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f--~~~--~~~t~----------~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF--RES--YIPTI----------E-DTYRQVISCSKNICTLQITDTTGSHQFPAMQ 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CCC--cCCcc----------h-heEEEEEEECCEEEEEEEEECCCCCcchHHH
Confidence 3689999999999999999985421 100 00000 0 0111122333445788999999999998877
Q ss_pred HHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHH------cCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~------~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
...++.+|++|+|+|.++..... ...++..+.. .++|+++|.||+|+...+.- ..++...... ..
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~-------~~ 138 (165)
T cd04140 67 RLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREV-SSNEGAACAT-------EW 138 (165)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCee-cHHHHHHHHH-------Hh
Confidence 78889999999999998754322 2333343333 46799999999999653210 1111111111 12
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
.++++.+||++|. |++++++.|.+
T Consensus 139 ~~~~~e~SA~~g~----------~v~~~f~~l~~ 162 (165)
T cd04140 139 NCAFMETSAKTNH----------NVQELFQELLN 162 (165)
T ss_pred CCcEEEeecCCCC----------CHHHHHHHHHh
Confidence 3578999999998 99999999865
No 198
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.56 E-value=1.7e-14 Score=126.63 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=74.8
Q ss_pred EEEEEEee---eCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEecccee
Q psy1760 412 LQIISLEY---SSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEI 488 (793)
Q Consensus 412 ~~V~~~~~---~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i 488 (793)
++|||+.+ +++.|+++++||++|+|++||.|++... + ..++|++|+.+.|.++.++++|.||||++++|++++
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~--~--~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~~ 76 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRL--G--KEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNF 76 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCC--C--CEEEeeEeEEEecCCeeEcCEECCCCEEEEECCCCc
Confidence 37899999 9999999999999999999999988654 3 357899999999999999999999999999999999
Q ss_pred ecCCeEeC
Q psy1760 489 CIGSTICD 496 (793)
Q Consensus 489 ~iGdtl~~ 496 (793)
.+|||||+
T Consensus 77 ~~Gdtl~~ 84 (85)
T cd03689 77 QIGDTLTE 84 (85)
T ss_pred cccCEeeC
Confidence 99999985
No 199
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.56 E-value=2.5e-14 Score=140.12 Aligned_cols=156 Identities=19% Similarity=0.212 Sum_probs=101.1
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+|+++|++++|||||+++|+....... ....-|.+.......+......++||||||+..|.....
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSK--------------YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRN 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC--------------CCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHH
Confidence 689999999999999999986521110 000011122222222223346889999999998888777
Q ss_pred HHhhccCcEEEEEeCCCCCCchhH-HHHHHHHH--------cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccc
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK--------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~--------~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~ 362 (793)
..++.+|++|+|+|+++....+.. .++..+.. .+.|+++|+||+|+...+ ....++...... .
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~-------~ 139 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR-AVSEDEGRLWAE-------S 139 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccc-ccCHHHHHHHHH-------H
Confidence 889999999999999874322222 22222222 357889999999986321 111222222211 1
Q ss_pred cCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 363 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 363 l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
..+|++.+||++|. |++++++.|.+.+
T Consensus 140 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~l 166 (168)
T cd04119 140 KGFKYFETSACTGE----------GVNEMFQTLFSSI 166 (168)
T ss_pred cCCeEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 23678999999998 9999999987654
No 200
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.56 E-value=2e-14 Score=126.56 Aligned_cols=86 Identities=51% Similarity=0.843 Sum_probs=77.7
Q ss_pred ceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceee
Q psy1760 410 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC 489 (793)
Q Consensus 410 ~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~ 489 (793)
|+|+||++.++++.|+++++||++|+|++||.|++... +++....+|.+|+.+.|.++.++++|.||||+++.|++++.
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~-~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~~~~ 79 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKR-DGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDIT 79 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcC-CCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCCCCc
Confidence 68999999999999999999999999999999998765 22223478999999999999999999999999999999999
Q ss_pred cCCeEeC
Q psy1760 490 IGSTICD 496 (793)
Q Consensus 490 iGdtl~~ 496 (793)
+||||++
T Consensus 80 ~Gdtl~~ 86 (86)
T cd03691 80 IGDTICD 86 (86)
T ss_pred ccceecC
Confidence 9999963
No 201
>PTZ00369 Ras-like protein; Provisional
Probab=99.55 E-value=1.6e-14 Score=145.95 Aligned_cols=158 Identities=16% Similarity=0.194 Sum_probs=103.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|.+|+|||||+++++........ . ..-|.+. .....+....+.++||||||+.+|...+
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~----~----------~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~ 70 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFIDEY----D----------PTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMR 70 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcCc----C----------CchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhH
Confidence 48999999999999999999864211000 0 0001111 1112233334678899999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCc-hhHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
...++.+|++|+|+|+++...- ....++..... .++|+++|.||+|+...+.-. .++...... ...+
T Consensus 71 ~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~-~~~~~~~~~-------~~~~ 142 (189)
T PTZ00369 71 DQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVS-TGEGQELAK-------SFGI 142 (189)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC-HHHHHHHHH-------HhCC
Confidence 9999999999999999875321 12222222322 367899999999986542111 112222211 1246
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
|++.+||++|. |++++++.|.+.+..
T Consensus 143 ~~~e~Sak~~~----------gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 143 PFLETSAKQRV----------NVDEAFYELVREIRK 168 (189)
T ss_pred EEEEeeCCCCC----------CHHHHHHHHHHHHHH
Confidence 89999999998 899999988876643
No 202
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.55 E-value=3.6e-14 Score=143.58 Aligned_cols=156 Identities=21% Similarity=0.244 Sum_probs=105.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCccc-----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD----- 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d----- 285 (793)
.+|+++|++|+|||||+++|+..... .......|.|+...... + +..+.||||||+..
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~ 87 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTNRKNL--------------ARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSK 87 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCc--------------ccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCc
Confidence 58999999999999999999864211 11122234554433222 2 47899999999632
Q ss_pred -----chHHHHHHhhc---cCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCC-hhhhHhHHHHHHhhh
Q psy1760 286 -----FGGEVERILSM---VDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKL 356 (793)
Q Consensus 286 -----f~~ev~~~l~~---aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~-~~~v~~~i~~~~~~l 356 (793)
+...+...++. ++++++|+|+..+.......+++.+...++|.++++||+|+.... .+...+++...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~ 167 (196)
T PRK00454 88 EEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFG 167 (196)
T ss_pred hHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc
Confidence 22333334443 467889999988776666666777777899999999999986532 222333343333221
Q ss_pred cccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 357 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 357 ~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
..+++++||++|. |++++++.|.+.+.
T Consensus 168 -------~~~~~~~Sa~~~~----------gi~~l~~~i~~~~~ 194 (196)
T PRK00454 168 -------DDEVILFSSLKKQ----------GIDELRAAIAKWLA 194 (196)
T ss_pred -------CCceEEEEcCCCC----------CHHHHHHHHHHHhc
Confidence 3578999999998 99999999977664
No 203
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.55 E-value=1.9e-14 Score=140.48 Aligned_cols=155 Identities=17% Similarity=0.219 Sum_probs=101.3
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+|+++|.+|+|||||+++|+.......... ...+ . ......+......+.+|||||+.+|.....
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~----~~~~----------~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 66 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEP----TKAD----------S-YRKKVVLDGEDVQLNILDTAGQEDYAAIRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCC----cchh----------h-EEEEEEECCEEEEEEEEECCChhhhhHHHH
Confidence 689999999999999999985422110000 0000 0 011122233346799999999999999999
Q ss_pred HHhhccCcEEEEEeCCCCCCc-hhHHHHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 292 RILSMVDNVLLLIDAVEGPMP-QTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
..++.+|++++|+|..+.-.. .....+.... ..++|+++|+||+|+...+. ...++..+.... ..+|
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~-~~~~~~~~~~~~-------~~~~ 138 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ-VSSEEAANLARQ-------WGVP 138 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccc-cCHHHHHHHHHH-------hCCe
Confidence 999999999999998763210 1122222222 25789999999999865211 111222222221 2468
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
++++||++|. |++++++.+.+.+
T Consensus 139 ~~~~Sa~~~~----------gi~~l~~~l~~~~ 161 (164)
T cd04139 139 YVETSAKTRQ----------NVEKAFYDLVREI 161 (164)
T ss_pred EEEeeCCCCC----------CHHHHHHHHHHHH
Confidence 9999999998 9999999987654
No 204
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.55 E-value=3.2e-14 Score=139.99 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=103.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|.+|+|||||+++++...... +....++.......+..++ ..+.+|||||+..|..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 66 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE----------------SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 66 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC----------------CCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHH
Confidence 378999999999999999997542110 0011122222223344444 5789999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.....++.+|++|+|+|+++...-. ...++..+.. .+.|.++|.||+|+...+. ...++...... ...
T Consensus 67 ~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~ 138 (166)
T cd01869 67 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRV-VDYSEAQEFAD-------ELG 138 (166)
T ss_pred HHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccC-CCHHHHHHHHH-------HcC
Confidence 8888899999999999998742211 1223333332 3578999999999865431 11122222221 224
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
+|++++||++|. |++++++.|.+.+
T Consensus 139 ~~~~~~Sa~~~~----------~v~~~~~~i~~~~ 163 (166)
T cd01869 139 IPFLETSAKNAT----------NVEQAFMTMAREI 163 (166)
T ss_pred CeEEEEECCCCc----------CHHHHHHHHHHHH
Confidence 689999999998 9999999987654
No 205
>PLN03118 Rab family protein; Provisional
Probab=99.55 E-value=2.9e-14 Score=146.69 Aligned_cols=160 Identities=19% Similarity=0.204 Sum_probs=106.7
Q ss_pred ccccccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec--CeEEEEecCCCc
Q psy1760 206 KLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGH 283 (793)
Q Consensus 206 ~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~--~~~i~iiDTPGh 283 (793)
...+..+|+++|++|+|||||+++|+.... . ......|.+. ....+.++ .+.+.||||||+
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~--~-------------~~~~t~~~~~--~~~~~~~~~~~~~l~l~Dt~G~ 72 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSV--E-------------DLAPTIGVDF--KIKQLTVGGKRLKLTIWDTAGQ 72 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCC--C-------------CcCCCceeEE--EEEEEEECCEEEEEEEEECCCc
Confidence 334556899999999999999999986421 0 0111122222 22333344 367899999999
Q ss_pred ccchHHHHHHhhccCcEEEEEeCCCCCCchhH-HHHHH-HH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhc
Q psy1760 284 ADFGGEVERILSMVDNVLLLIDAVEGPMPQTR-FVTRK-AL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC 357 (793)
Q Consensus 284 ~df~~ev~~~l~~aD~allVVDa~~g~~~qt~-~~l~~-~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~ 357 (793)
.+|.......++.+|++|+|+|+++....+.. ..|.. +. ..+.|.++|+||+|+...+.. ..++..++..
T Consensus 73 ~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i-~~~~~~~~~~--- 148 (211)
T PLN03118 73 ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDV-SREEGMALAK--- 148 (211)
T ss_pred hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCcc-CHHHHHHHHH---
Confidence 99999888999999999999999874332222 22322 22 135688999999999754321 1122222211
Q ss_pred ccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 358 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 358 ~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
...++++++||++|. |++++++.|.+.+.
T Consensus 149 ----~~~~~~~e~SAk~~~----------~v~~l~~~l~~~~~ 177 (211)
T PLN03118 149 ----EHGCLFLECSAKTRE----------NVEQCFEELALKIM 177 (211)
T ss_pred ----HcCCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 123578999999998 99999999987764
No 206
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.55 E-value=3.8e-14 Score=139.18 Aligned_cols=154 Identities=17% Similarity=0.172 Sum_probs=101.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec--CeEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~--~~~i~iiDTPGh~df~~ 288 (793)
.+|+++|.+|+|||||+++++... +... ...++.......+..+ .+.++||||||+..|..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~--~~~~---------------~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI--FVEK---------------YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA 64 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC--CCcc---------------cCCcchheEEEEEEECCEEEEEEEEECCCcccchh
Confidence 478999999999999999997431 1100 0001111111233344 45678999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
.....++.+|++++|+|.++....+. ..++.... ..++|+++|+||+|+...... ..++...+.. ..
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~-------~~ 136 (164)
T cd04175 65 MRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVV-GKEQGQNLAR-------QW 136 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEE-cHHHHHHHHH-------Hh
Confidence 88889999999999999876432221 22333332 246899999999999754211 1111222111 12
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.+|++++||++|. |+++++++|.+.+
T Consensus 137 ~~~~~~~Sa~~~~----------~v~~~~~~l~~~l 162 (164)
T cd04175 137 GCAFLETSAKAKI----------NVNEIFYDLVRQI 162 (164)
T ss_pred CCEEEEeeCCCCC----------CHHHHHHHHHHHh
Confidence 4689999999998 9999999997654
No 207
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.55 E-value=3.4e-14 Score=139.50 Aligned_cols=152 Identities=16% Similarity=0.199 Sum_probs=100.7
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+|+++|+.++|||||+++|.... +.. . ...-|..+ ..+.+....+.+|||||+..|.....
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~--~~~----------~---~pt~g~~~----~~~~~~~~~~~l~D~~G~~~~~~~~~ 62 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGE--IVT----------T---IPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWR 62 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--Ccc----------c---CCCCCcce----EEEEECCEEEEEEECCCCHhHHHHHH
Confidence 58899999999999999996431 110 0 00012211 23456788999999999999888888
Q ss_pred HHhhccCcEEEEEeCCCCC-CchhHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 292 RILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
..++.+|++|+|+|+++.. ..+....+..+.. .+.|+++++||+|+.+... .+++...+..... ....++
T Consensus 63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~--~~~~~~ 137 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS---AAEVTDKLGLHSL--RNRNWY 137 (159)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC---HHHHHHHhCcccc--CCCCEE
Confidence 8899999999999998632 1222333333322 2578899999999965321 2233232211111 112356
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
++.+||++|. |+++++++|.+
T Consensus 138 ~~~~Sak~g~----------gv~~~~~~l~~ 158 (159)
T cd04150 138 IQATCATSGD----------GLYEGLDWLSN 158 (159)
T ss_pred EEEeeCCCCC----------CHHHHHHHHhc
Confidence 7899999998 99999998854
No 208
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.55 E-value=3.7e-14 Score=139.33 Aligned_cols=155 Identities=21% Similarity=0.240 Sum_probs=104.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|.+++|||||+++|+...-.. +..+.++.......+..++ ..+.+|||||+..|..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 67 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNL----------------DSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRA 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC----------------CCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHH
Confidence 378999999999999999998552111 0111222223333444444 4688999999998888
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.....++.+|++|+|+|+++....+. ..++..+.. .++|+++|+||+|+...+. ...++...+... ..
T Consensus 68 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~ 139 (165)
T cd01868 68 ITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA-VPTEEAKAFAEK-------NG 139 (165)
T ss_pred HHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc-CCHHHHHHHHHH-------cC
Confidence 88888999999999999986332222 223333332 2578899999999875421 122233333221 24
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
++++++||++|. |++.+++.|.+.+
T Consensus 140 ~~~~~~Sa~~~~----------~v~~l~~~l~~~i 164 (165)
T cd01868 140 LSFIETSALDGT----------NVEEAFKQLLTEI 164 (165)
T ss_pred CEEEEEECCCCC----------CHHHHHHHHHHHh
Confidence 679999999998 9999999987654
No 209
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.55 E-value=3.1e-14 Score=155.92 Aligned_cols=154 Identities=23% Similarity=0.285 Sum_probs=106.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC-eEEEEecCCCccc----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-TRINIIDTPGHAD---- 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~-~~i~iiDTPGh~d---- 285 (793)
..|+|+|.+|+|||||+++|...... .....++|+.+....+.+++ ..++|+||||+.+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~----------------va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~ 221 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPK----------------IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASE 221 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCcc----------------ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcc
Confidence 57899999999999999999754211 12234566777777777776 8999999999853
Q ss_pred ---chHHHHHHhhccCcEEEEEeCCCC----CCchhHHHHHHHHH-----cCCccEEEEecccCCCCChhhhHhHHHHHH
Q psy1760 286 ---FGGEVERILSMVDNVLLLIDAVEG----PMPQTRFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLF 353 (793)
Q Consensus 286 ---f~~ev~~~l~~aD~allVVDa~~g----~~~qt~~~l~~~~~-----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~ 353 (793)
+.....+.+..+|++|+|+|+++. +..+...+.+.+.. .+.|.++|+||+|+..+. ..+++.+.+
T Consensus 222 ~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~---~~~~~~~~l 298 (329)
T TIGR02729 222 GAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE---ELAELLKEL 298 (329)
T ss_pred cccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH---HHHHHHHHH
Confidence 334455667789999999999864 11122223333332 367899999999997542 122222222
Q ss_pred hhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 354 DKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 354 ~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.+ ....+++++||+++. |+++|++.|.+.+
T Consensus 299 ~~------~~~~~vi~iSAktg~----------GI~eL~~~I~~~l 328 (329)
T TIGR02729 299 KK------ALGKPVFPISALTGE----------GLDELLYALAELL 328 (329)
T ss_pred HH------HcCCcEEEEEccCCc----------CHHHHHHHHHHHh
Confidence 21 123579999999998 9999999997765
No 210
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.55 E-value=2.6e-14 Score=137.96 Aligned_cols=152 Identities=18% Similarity=0.224 Sum_probs=102.2
Q ss_pred eeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHHH
Q psy1760 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVER 292 (793)
Q Consensus 213 IaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~~ 292 (793)
|+++|++|+|||||+++|........ . .+ |+......+.+++..+.+|||||+..|...+..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~-----------~-----~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSED-----------T-----IP--TVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcC-----------c-----cC--CCCcceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 68999999999999999976521110 0 01 111112234566788999999999999998999
Q ss_pred HhhccCcEEEEEeCCCCC-CchhHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 293 ILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 293 ~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
.+..+|++++|+|+.+.. ..+....+..+.. .++|+++|+||+|..+... .+++.+.+. +... ....+++
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~---~~~~~~~~~-~~~~-~~~~~~~ 138 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS---VDELIEQMN-LKSI-TDREVSC 138 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC---HHHHHHHhC-cccc-cCCceEE
Confidence 999999999999998632 2222333333322 4789999999999875421 122222221 1110 1124678
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
+++||++|. |++.++++|.+
T Consensus 139 ~~~Sa~~~~----------gi~~l~~~l~~ 158 (159)
T cd04159 139 YSISCKEKT----------NIDIVLDWLIK 158 (159)
T ss_pred EEEEeccCC----------ChHHHHHHHhh
Confidence 999999998 99999998854
No 211
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.55 E-value=3.5e-14 Score=161.45 Aligned_cols=155 Identities=21% Similarity=0.230 Sum_probs=108.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCccc-----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD----- 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d----- 285 (793)
..|+|+|.||+|||||+++|..... .....+++|+.+....+.+++..+.|+||||+.+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akp----------------kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g 223 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKP----------------KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEG 223 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCc----------------cccccCcccccceEEEEEECCeEEEEEECCCCccccchh
Confidence 5789999999999999999975421 1233467888888888999999999999999753
Q ss_pred --chHHHHHHhhccCcEEEEEeCCCC---CCc--hhHH----HHHHH----------HHcCCccEEEEecccCCCCChhh
Q psy1760 286 --FGGEVERILSMVDNVLLLIDAVEG---PMP--QTRF----VTRKA----------LKLGFKPIVVVNKIDRSNARPEW 344 (793)
Q Consensus 286 --f~~ev~~~l~~aD~allVVDa~~g---~~~--qt~~----~l~~~----------~~~~ip~IvvINKiD~~~a~~~~ 344 (793)
...+..+.+..+|++|+|||++.. ..+ +... +..+. ...+.|.|||+||+|++++. +
T Consensus 224 ~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~--e 301 (500)
T PRK12296 224 KGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR--E 301 (500)
T ss_pred hHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH--H
Confidence 223445667889999999999741 111 1111 11121 12367999999999997542 2
Q ss_pred hHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 345 VVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 345 v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
..+.+.+.+.. ..+|++++||+++. |+++|+++|.+.+.
T Consensus 302 l~e~l~~~l~~-------~g~~Vf~ISA~tge----------GLdEL~~~L~ell~ 340 (500)
T PRK12296 302 LAEFVRPELEA-------RGWPVFEVSAASRE----------GLRELSFALAELVE 340 (500)
T ss_pred HHHHHHHHHHH-------cCCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 33333333321 14689999999998 89999988877664
No 212
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.55 E-value=2.8e-14 Score=141.10 Aligned_cols=155 Identities=15% Similarity=0.226 Sum_probs=102.1
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+|+++|.+|+|||||+++++....... .....|..+.........+...+.+|||||+.+|.....
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKK--------------YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRD 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC--------------CCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccH
Confidence 689999999999999999985421100 011112222221122223356889999999999887777
Q ss_pred HHhhccCcEEEEEeCCCCCCchhHH-HHHHHHHc--CCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEE
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQTRF-VTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVI 368 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~qt~~-~l~~~~~~--~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi 368 (793)
..+..+|++|+|+|.+++..-+... ++..+... ++|+++|.||+|+...... .+..+.. . ....+++
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~---~~~~~~~-~------~~~~~~~ 137 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVK---AKQITFH-R------KKNLQYY 137 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCC---HHHHHHH-H------HcCCEEE
Confidence 7889999999999998754333222 22333322 6899999999999743211 1111111 1 1245799
Q ss_pred EeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 369 YTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 369 ~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
.+||++|. |++++++.|.+.+.
T Consensus 138 e~Sa~~~~----------~v~~~f~~l~~~~~ 159 (166)
T cd00877 138 EISAKSNY----------NFEKPFLWLARKLL 159 (166)
T ss_pred EEeCCCCC----------ChHHHHHHHHHHHH
Confidence 99999998 99999999987663
No 213
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.55 E-value=2.8e-14 Score=139.54 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=100.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|.+|+|||||+++++........ .+ ++.......+..++ ..+.||||||+..|..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~-----------~~------t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKY-----------DP------TIEDSYRKQIEVDGQQCMLEILDTAGTEQFTA 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc-----------CC------chhhhEEEEEEECCEEEEEEEEECCCccccch
Confidence 37899999999999999999854211000 00 00011112233343 5678899999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
.....++.+|++++|+|.++..... ...++..+.. .+.|+|+|.||+|+...+.. ..++...+.. ..
T Consensus 65 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~-------~~ 136 (163)
T cd04136 65 MRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVV-SREEGQALAR-------QW 136 (163)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccee-cHHHHHHHHH-------Hc
Confidence 8888899999999999998642211 2223333332 36899999999998653211 1112222211 12
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
..|++++||++|. |+.++++.|.+.+
T Consensus 137 ~~~~~~~Sa~~~~----------~v~~l~~~l~~~~ 162 (163)
T cd04136 137 GCPFYETSAKSKI----------NVDEVFADLVRQI 162 (163)
T ss_pred CCeEEEecCCCCC----------CHHHHHHHHHHhc
Confidence 3689999999998 9999999987653
No 214
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.54 E-value=3.5e-14 Score=140.25 Aligned_cols=155 Identities=21% Similarity=0.180 Sum_probs=103.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|.+|+|||||++++....... +....+........+.+++ ..+.+|||||+.+|..
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~ 67 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNP----------------SFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRT 67 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCc----------------ccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHH
Confidence 489999999999999999997542110 0001111122222334444 5789999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.....++.+|++|+|+|+.++..-+. ..++..+.. .+.|+++|.||+|+.+.+. ...++..+... ...
T Consensus 68 ~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~ 139 (167)
T cd01867 68 ITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRV-VSKEEGEALAD-------EYG 139 (167)
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccC-CCHHHHHHHHH-------HcC
Confidence 88888999999999999987433222 222333332 3678999999999975421 12233333322 124
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
+|++.+||++|. |++++++.+.+.+
T Consensus 140 ~~~~~~Sa~~~~----------~v~~~~~~i~~~~ 164 (167)
T cd01867 140 IKFLETSAKANI----------NVEEAFFTLAKDI 164 (167)
T ss_pred CEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 679999999998 9999999887654
No 215
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.54 E-value=2.7e-14 Score=141.20 Aligned_cols=156 Identities=17% Similarity=0.153 Sum_probs=101.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec--CeEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~--~~~i~iiDTPGh~df~~ 288 (793)
.+|+++|.+|+|||||++++......... +. .-+ ......+.++ ...+.+|||||+.+|..
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~---------~~-----t~~---~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 64 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESY---------DP-----TIE---DSYRKQVEIDGRQCDLEILDTAGTEQFTA 64 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc---------CC-----cch---heEEEEEEECCEEEEEEEEeCCCcccchh
Confidence 47899999999999999999755321100 00 001 0111222333 36789999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH-HHHHHH----HHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKA----LKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~----~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
.....++.+|++++|+|..+...-+.. .+.... ...+.|+++++||+|+...+.. ..++..++.... -
T Consensus 65 ~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~-~~~~~~~~~~~~------~ 137 (168)
T cd04177 65 MRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQV-SREDGVSLSQQW------G 137 (168)
T ss_pred hhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCcc-CHHHHHHHHHHc------C
Confidence 999999999999999998864222211 111222 2347899999999998654321 112222221111 1
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
..|++.+||++|. |++.+++.+..++.
T Consensus 138 ~~~~~~~SA~~~~----------~i~~~f~~i~~~~~ 164 (168)
T cd04177 138 NVPFYETSARKRT----------NVDEVFIDLVRQII 164 (168)
T ss_pred CceEEEeeCCCCC----------CHHHHHHHHHHHHh
Confidence 2689999999998 89999999987653
No 216
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.54 E-value=3.2e-14 Score=138.92 Aligned_cols=153 Identities=16% Similarity=0.194 Sum_probs=99.6
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee-cCeEEEEecCCCcccchHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~-~~~~i~iiDTPGh~df~~ev 290 (793)
.|+++|.+|+|||||+++|....... . ....|.++ ..+.+ .+..+++|||||+..|...+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~--~-------------~~t~~~~~----~~~~~~~~~~l~i~D~~G~~~~~~~~ 61 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT--T-------------IPTVGFNV----EMLQLEKHLSLTVWDVGGQEKMRTVW 61 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc--c-------------cCccCcce----EEEEeCCceEEEEEECCCCHhHHHHH
Confidence 37899999999999999998652110 0 00112221 12222 35789999999999888888
Q ss_pred HHHhhccCcEEEEEeCCCCCC-chhHHHHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPM-PQTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~-~qt~~~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
...+..+|++|+|+|+.+... ......+.... ..+.|+++|+||+|+..... .+++...+.. ........+
T Consensus 62 ~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~i~~~~~~-~~~~~~~~~ 137 (160)
T cd04156 62 KCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT---AEEITRRFKL-KKYCSDRDW 137 (160)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC---HHHHHHHcCC-cccCCCCcE
Confidence 888999999999999987531 11122222222 24789999999999965321 1222222211 110111245
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
+++++||++|. |++++++.|.+
T Consensus 138 ~~~~~Sa~~~~----------gv~~~~~~i~~ 159 (160)
T cd04156 138 YVQPCSAVTGE----------GLAEAFRKLAS 159 (160)
T ss_pred EEEecccccCC----------ChHHHHHHHhc
Confidence 78999999998 99999998853
No 217
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.54 E-value=5.7e-14 Score=143.38 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=103.8
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec---CeEEEEecCCCcccchH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---GTRINIIDTPGHADFGG 288 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~---~~~i~iiDTPGh~df~~ 288 (793)
+|+++|.+|+|||||+++|+....... ..+.+..+.....+.++ .+.+.||||||+..|..
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~----------------~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~ 65 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQH----------------YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGG 65 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC----------------CCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhh
Confidence 689999999999999999986421100 00111112222233333 46789999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhHHHH-HHHH-------HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKAL-------KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 360 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~~~l-~~~~-------~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~ 360 (793)
.....++.+|++|+|+|.++...-+....| ..+. ..++|+|+|.||+|+...+ ....+++.++....+
T Consensus 66 ~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~--- 141 (201)
T cd04107 66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRL-AKDGEQMDQFCKENG--- 141 (201)
T ss_pred hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccc-ccCHHHHHHHHHHcC---
Confidence 888899999999999999874322222222 2221 1467999999999996422 122233444433322
Q ss_pred cccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 361 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 361 ~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
-.+++.+||++|. |++++++.|.+.+..
T Consensus 142 ---~~~~~e~Sak~~~----------~v~e~f~~l~~~l~~ 169 (201)
T cd04107 142 ---FIGWFETSAKEGI----------NIEEAMRFLVKNILA 169 (201)
T ss_pred ---CceEEEEeCCCCC----------CHHHHHHHHHHHHHH
Confidence 1468999999998 898999988876643
No 218
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.53 E-value=3.7e-14 Score=137.77 Aligned_cols=153 Identities=17% Similarity=0.211 Sum_probs=102.9
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec--CeEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~--~~~i~iiDTPGh~df~~e 289 (793)
+|+++|++|+|||||+++|+........ +..+.......+.++ .+.+++||+||+.++...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 63 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEY-----------------DPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAM 63 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCc-----------------CCChhHeEEEEEEECCEEEEEEEEECCChHHHHHH
Confidence 4789999999999999999865311000 000111112233333 467899999999999888
Q ss_pred HHHHhhccCcEEEEEeCCCCCC-chhHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 290 VERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
....++.+|++++|+|..+... .....++..... .+.|+++|+||+|+...+ ....+++..+.... .
T Consensus 64 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~-------~ 135 (160)
T cd00876 64 RDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER-QVSKEEGKALAKEW-------G 135 (160)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccc-eecHHHHHHHHHHc-------C
Confidence 8889999999999999876421 122233333332 368999999999997632 11223333333322 2
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.|++++||+++. |++++++.|.+++
T Consensus 136 ~~~~~~S~~~~~----------~i~~l~~~l~~~i 160 (160)
T cd00876 136 CPFIETSAKDNI----------NIDEVFKLLVREI 160 (160)
T ss_pred CcEEEeccCCCC----------CHHHHHHHHHhhC
Confidence 579999999998 9999999997653
No 219
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.53 E-value=5.1e-14 Score=138.96 Aligned_cols=157 Identities=17% Similarity=0.135 Sum_probs=101.9
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+++++|+.|+|||||+++|...... .. ... . ....++. ..+...+..+++|||||+.++...+.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~--~~--~~~-~--------~~~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~ 65 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP--EN--VPR-V--------LPEITIP---ADVTPERVPTTIVDTSSRPQDRANLA 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--cc--CCC-c--------ccceEee---eeecCCeEEEEEEeCCCchhhhHHHh
Confidence 5889999999999999999864211 10 000 0 0011211 12223457899999999988887778
Q ss_pred HHhhccCcEEEEEeCCCCCCchhH--HHHHHHHH--cCCccEEEEecccCCCCChh-hhHhHHHHHHhhhcccccccCcc
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQTR--FVTRKALK--LGFKPIVVVNKIDRSNARPE-WVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~--~~ip~IvvINKiD~~~a~~~-~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
..++.+|++++|+|+++....+.. .+...+.. .+.|+++|+||+|+.+.... ...+++..+...+.. ..+
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-----~~~ 140 (166)
T cd01893 66 AEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFRE-----IET 140 (166)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhc-----ccE
Confidence 888999999999999875443332 22233332 36899999999999764321 111222222111111 126
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
++.+||++|. |++++++.+...+
T Consensus 141 ~~e~Sa~~~~----------~v~~lf~~~~~~~ 163 (166)
T cd01893 141 CVECSAKTLI----------NVSEVFYYAQKAV 163 (166)
T ss_pred EEEecccccc----------CHHHHHHHHHHHh
Confidence 8999999998 9999999887654
No 220
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.53 E-value=2.6e-14 Score=136.98 Aligned_cols=136 Identities=23% Similarity=0.221 Sum_probs=90.9
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcc----cch
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA----DFG 287 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~----df~ 287 (793)
+|+++|++|+|||||+++|...... .. .| ..+.+.+ .+|||||.. .+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-------------------~~-~t-----~~~~~~~---~~iDt~G~~~~~~~~~ 53 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-------------------YK-KT-----QAVEYND---GAIDTPGEYVENRRLY 53 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-------------------cc-cc-----eeEEEcC---eeecCchhhhhhHHHH
Confidence 6899999999999999999754110 00 01 1233333 789999973 223
Q ss_pred HHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 288 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 288 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
..+...++.+|++|+|+|++++...+...++.. .+.|.++|+||+|+.+.. ...++..+.+...+ ..|+
T Consensus 54 ~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~------~~~~ 122 (142)
T TIGR02528 54 SALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEAD--VDIERAKELLETAG------AEPI 122 (142)
T ss_pred HHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCcc--cCHHHHHHHHHHcC------CCcE
Confidence 333345789999999999998876665443332 245899999999986421 12233333332221 1278
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHH
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAIL 396 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~ 396 (793)
+++||++|. |++++++.|.
T Consensus 123 ~~~Sa~~~~----------gi~~l~~~l~ 141 (142)
T TIGR02528 123 FEISSVDEQ----------GLEALVDYLN 141 (142)
T ss_pred EEEecCCCC----------CHHHHHHHHh
Confidence 999999998 8999998873
No 221
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.53 E-value=5.2e-14 Score=140.50 Aligned_cols=155 Identities=14% Similarity=0.130 Sum_probs=104.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
..|+++|.+++|||||+++|.... +. +. . + |+......+.+++..+.+|||||+..|....
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~--~~----------~~---~--~--t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~ 74 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGE--SV----------TT---I--P--TIGFNVETVTYKNISFTVWDVGGQDKIRPLW 74 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCC--CC----------Cc---C--C--ccccceEEEEECCEEEEEEECCCChhhHHHH
Confidence 479999999999999999996321 10 00 0 1 1111122345678899999999999998888
Q ss_pred HHHhhccCcEEEEEeCCCCC-CchhHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
...++.+|++|+|+|+++.. .....+.+..+.. .+.|+++|.||+|+.++.. .+++.+.+...... ...+
T Consensus 75 ~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~~--~~~~ 149 (175)
T smart00177 75 RHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK---AAEITEKLGLHSIR--DRNW 149 (175)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCC---HHHHHHHhCccccC--CCcE
Confidence 88899999999999998642 2233344444322 3578999999999976432 12333332211111 1234
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.++++||++|. |+++++++|.+.+
T Consensus 150 ~~~~~Sa~~g~----------gv~e~~~~l~~~~ 173 (175)
T smart00177 150 YIQPTCATSGD----------GLYEGLTWLSNNL 173 (175)
T ss_pred EEEEeeCCCCC----------CHHHHHHHHHHHh
Confidence 57789999998 9999999997654
No 222
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.53 E-value=5.8e-14 Score=142.13 Aligned_cols=158 Identities=20% Similarity=0.168 Sum_probs=103.6
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec--CeEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~--~~~i~iiDTPGh~df~~e 289 (793)
+|+++|.+|+|||||++++......... ....+........+.++ ...++||||||+..|...
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~---------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 66 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGN---------------FIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSV 66 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccC---------------cCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHh
Confidence 5889999999999999999754211100 00111111111223333 367899999999998887
Q ss_pred HHHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
....++.+|++|+|+|+++....+ ...++..+.. .++|+++|+||+|+...+. ...++...+.. ...+
T Consensus 67 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~-~~~~~~~~l~~-------~~~~ 138 (191)
T cd04112 67 THAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERV-VKREDGERLAK-------EYGV 138 (191)
T ss_pred hHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccc-cCHHHHHHHHH-------HcCC
Confidence 888899999999999998743222 1223333333 3678999999999864321 11122222221 1246
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
|++.+||++|. |++++++.|.+.++..
T Consensus 139 ~~~e~Sa~~~~----------~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 139 PFMETSAKTGL----------NVELAFTAVAKELKHR 165 (191)
T ss_pred eEEEEeCCCCC----------CHHHHHHHHHHHHHHh
Confidence 89999999998 9999999998877654
No 223
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.52 E-value=6.5e-14 Score=138.07 Aligned_cols=157 Identities=16% Similarity=0.134 Sum_probs=102.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++++|||||+++|......... ...-|.+.......+......+.+|||||+..|....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 68 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADC--------------PHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVT 68 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC--------------CcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 37899999999999999999754211100 0011222222222222223578999999999999888
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhH-HHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
...++.+|++|+|+|+++...-+.. .++..... .+.|+++|.||+|+...+. ...++..++... ..++
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~~~ 140 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRD-VTYEEAKQFADE-------NGLL 140 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC-cCHHHHHHHHHH-------cCCE
Confidence 8899999999999999874322222 23333322 3568899999999976431 112233333221 2468
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
++.+||++|. |++++++.+...+
T Consensus 141 ~~e~Sa~~~~----------~i~e~f~~l~~~~ 163 (166)
T cd04122 141 FLECSAKTGE----------NVEDAFLETAKKI 163 (166)
T ss_pred EEEEECCCCC----------CHHHHHHHHHHHH
Confidence 9999999998 8888888876543
No 224
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.52 E-value=5.5e-14 Score=143.44 Aligned_cols=157 Identities=19% Similarity=0.165 Sum_probs=98.4
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccch--
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG-- 287 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~-- 287 (793)
+|+++|.+|+|||||+++++...... +..+.++.......+.+++ +.++||||||+.+|.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~----------------~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~ 65 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPE----------------EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT 65 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCc----------------ccCCccccccceeEEEECCEEEEEEEEeCCCcccCCcc
Confidence 68999999999999999998542110 0011111111112344555 578899999987652
Q ss_pred --HH----HHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHH------HcCCccEEEEecccCCCCChhhhHhHHHHHHh
Q psy1760 288 --GE----VERILSMVDNVLLLIDAVEGPMPQT-RFVTRKAL------KLGFKPIVVVNKIDRSNARPEWVVDATFDLFD 354 (793)
Q Consensus 288 --~e----v~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~------~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~ 354 (793)
.+ ....++.+|++|+|+|+++...-+. ..+++.+. ..++|+++|.||+|+...+... .+++.++..
T Consensus 66 ~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~-~~~~~~~~~ 144 (198)
T cd04142 66 AGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAP-RHVLSVLVR 144 (198)
T ss_pred chhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccccc-HHHHHHHHH
Confidence 12 2345788999999999987532222 22223332 2468999999999996543211 112222111
Q ss_pred hhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 355 KLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 355 ~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+ ...+|++++||++|. |++.||+.+...+-.
T Consensus 145 ~------~~~~~~~e~Sak~g~----------~v~~lf~~i~~~~~~ 175 (198)
T cd04142 145 K------SWKCGYLECSAKYNW----------HILLLFKELLISATT 175 (198)
T ss_pred H------hcCCcEEEecCCCCC----------CHHHHHHHHHHHhhc
Confidence 1 125789999999998 899999988775543
No 225
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.52 E-value=6.6e-14 Score=138.34 Aligned_cols=154 Identities=19% Similarity=0.189 Sum_probs=101.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|.+|+|||||+++++...... +..+.++.......+.+++ ..+.||||||+..|..
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~ 69 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDT----------------QLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRS 69 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCc----------------CcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHH
Confidence 478999999999999999997542110 0011112222222333443 5678999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhHHHH-HHHH-------HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKAL-------KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 360 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~~~l-~~~~-------~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~ 360 (793)
.....++.+|++++|+|..+....+....| .... ..++|+++|.||+|+... ....+++.++..+++
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~--- 144 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER--QVSTEEAQAWCRENG--- 144 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccc--ccCHHHHHHHHHHCC---
Confidence 888899999999999998865322222212 2111 135789999999998632 112334444433222
Q ss_pred cccCccEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 361 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 361 ~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
..+++.+||++|. |+.++++.+++.
T Consensus 145 ---~~~~~e~Sa~~~~----------~v~~~~~~~~~~ 169 (170)
T cd04116 145 ---DYPYFETSAKDAT----------NVAAAFEEAVRR 169 (170)
T ss_pred ---CCeEEEEECCCCC----------CHHHHHHHHHhh
Confidence 2468999999998 899999988754
No 226
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.52 E-value=5.4e-14 Score=122.37 Aligned_cols=81 Identities=25% Similarity=0.352 Sum_probs=74.7
Q ss_pred ceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceee
Q psy1760 410 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC 489 (793)
Q Consensus 410 ~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~ 489 (793)
|.++|||+.++++ |+++++||++|+|++||.|++... + .+.+|.+|+.+.|.++.+++++.||||+++.|++ +.
T Consensus 1 ~~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~--~--~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~-~~ 74 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRT--G--KKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGID-CA 74 (81)
T ss_pred CeEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCC--C--CEEEEeEEEEEeCCCceEccEECCCCEEEEECCC-cc
Confidence 5789999999988 999999999999999999998765 3 3689999999999999999999999999999997 99
Q ss_pred cCCeEeC
Q psy1760 490 IGSTICD 496 (793)
Q Consensus 490 iGdtl~~ 496 (793)
+||||++
T Consensus 75 ~Gdtl~~ 81 (81)
T cd04091 75 SGDTFTD 81 (81)
T ss_pred cCCEecC
Confidence 9999974
No 227
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.52 E-value=6e-14 Score=141.92 Aligned_cols=156 Identities=15% Similarity=0.175 Sum_probs=101.1
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~e 289 (793)
+|+++|.+|+|||||+++|+......... .+. + ......+.+++ ..++||||||+.+|...
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~----~t~----------~---~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 63 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYD----PTI----------E---DSYRKQVVVDGQPCMLEVLDTAGQEEYTAL 63 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCC----Cch----------H---hhEEEEEEECCEEEEEEEEECCCchhhHHH
Confidence 37899999999999999998542111000 000 0 00011222333 45889999999999988
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH------cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccc
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~------~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~ 362 (793)
....++.+|++|+|+|.++...... ..++..+.. .+.|+|+|.||+|+...+.. ..++..++.. .
T Consensus 64 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v-~~~~~~~~~~-------~ 135 (190)
T cd04144 64 RDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREV-STEEGAALAR-------R 135 (190)
T ss_pred HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCcc-CHHHHHHHHH-------H
Confidence 8889999999999999987432222 223333322 35788999999998643211 1111122111 1
Q ss_pred cCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 363 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 363 l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
..++++.+||++|. |++++++.+.+.+-..
T Consensus 136 ~~~~~~e~SAk~~~----------~v~~l~~~l~~~l~~~ 165 (190)
T cd04144 136 LGCEFIEASAKTNV----------NVERAFYTLVRALRQQ 165 (190)
T ss_pred hCCEEEEecCCCCC----------CHHHHHHHHHHHHHHh
Confidence 24578999999998 8999999998766443
No 228
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.52 E-value=6.4e-14 Score=138.38 Aligned_cols=159 Identities=16% Similarity=0.208 Sum_probs=103.7
Q ss_pred eeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHHH
Q psy1760 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVER 292 (793)
Q Consensus 213 IaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~~ 292 (793)
|+++|.+|+|||||+++|........ . ...-|. ....+.+++..+.+|||||+.+|......
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~-----------~---~pt~g~----~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~ 63 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLES-----------V---VPTTGF----NSVAIPTQDAIMELLEIGGSQNLRKYWKR 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccc-----------c---cccCCc----ceEEEeeCCeEEEEEECCCCcchhHHHHH
Confidence 68999999999999999985421100 0 000111 12345677899999999999999988889
Q ss_pred HhhccCcEEEEEeCCCCCC-chhHHHHHHHHH--cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEE
Q psy1760 293 ILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK--LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIY 369 (793)
Q Consensus 293 ~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~--~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~ 369 (793)
.++.+|++|+|+|+++... ...+..+..+.. .++|+++|+||+|+..++. .+++.+.+.... -.....++++.
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~-~~~~~~~~~~~ 139 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARS---VQEIHKELELEP-IARGRRWILQG 139 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCC---HHHHHHHhCChh-hcCCCceEEEE
Confidence 9999999999999987432 122333333332 5789999999999976542 223332221111 11123567899
Q ss_pred eecCCCCcccccccccCCchhhHHHHHh
Q psy1760 370 TSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 370 ~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
+||++.....+ ..|+.++|+.+++
T Consensus 140 ~Sa~~~~s~~~----~~~v~~~~~~~~~ 163 (164)
T cd04162 140 TSLDDDGSPSR----MEAVKDLLSQLIN 163 (164)
T ss_pred eeecCCCChhH----HHHHHHHHHHHhc
Confidence 99998432211 1288889888754
No 229
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.52 E-value=7.5e-14 Score=156.89 Aligned_cols=153 Identities=22% Similarity=0.272 Sum_probs=106.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec-CeEEEEecCCCccc----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-GTRINIIDTPGHAD---- 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~-~~~i~iiDTPGh~d---- 285 (793)
..|+++|.||+|||||+++|...... ....+++|+.+....+.++ +..++++||||+..
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~k----------------Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~ 222 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPK----------------IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE 222 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCc----------------cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc
Confidence 47899999999999999999864211 1233567888877778887 78999999999753
Q ss_pred ---chHHHHHHhhccCcEEEEEeCCCC--CCc--hhHHHHHHHHH-----cCCccEEEEecccCCCCChhhhHhHHHHHH
Q psy1760 286 ---FGGEVERILSMVDNVLLLIDAVEG--PMP--QTRFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLF 353 (793)
Q Consensus 286 ---f~~ev~~~l~~aD~allVVDa~~g--~~~--qt~~~l~~~~~-----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~ 353 (793)
+.....+.+..+|++|+|+|+++. ..+ +...+...+.. .+.|.|||+||+|+... .+..+++.+
T Consensus 223 ~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~-- 298 (424)
T PRK12297 223 GVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKE-- 298 (424)
T ss_pred cchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHH--
Confidence 233445567779999999999752 122 22233333333 36799999999998532 222222222
Q ss_pred hhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 354 DKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 354 ~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
.+. .+++++||+++. |+++|++.|.+.++.
T Consensus 299 -~l~-------~~i~~iSA~tge----------GI~eL~~~L~~~l~~ 328 (424)
T PRK12297 299 -KLG-------PKVFPISALTGQ----------GLDELLYAVAELLEE 328 (424)
T ss_pred -HhC-------CcEEEEeCCCCC----------CHHHHHHHHHHHHHh
Confidence 221 479999999998 999999998877643
No 230
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.52 E-value=6.9e-14 Score=139.66 Aligned_cols=155 Identities=16% Similarity=0.172 Sum_probs=102.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec--CeEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~--~~~i~iiDTPGh~df~~ 288 (793)
++|+++|++|+|||||+++++......... .++.......+.++ ++.+.+|||||+.+|..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~-----------------~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 64 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYY-----------------PTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSI 64 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccC-----------------cchhhhEEEEEEECCEEEEEEEEECCChHhhHH
Confidence 689999999999999999998542211000 00000011222333 35679999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH-HHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
.....+..+|++++|+|.++....+.. .++..... .++|.|+|+||+|+...+. ...++...+... .
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~-------~ 136 (180)
T cd04137 65 LPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQ-VSTEEGKELAES-------W 136 (180)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCc-cCHHHHHHHHHH-------c
Confidence 888889999999999999875433332 23333322 4679999999999864321 111222222211 2
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
..|++++||++|. |+.++++++.+.+.
T Consensus 137 ~~~~~~~Sa~~~~----------gv~~l~~~l~~~~~ 163 (180)
T cd04137 137 GAAFLESSARENE----------NVEEAFELLIEEIE 163 (180)
T ss_pred CCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 3579999999998 89999998877653
No 231
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.51 E-value=1.2e-13 Score=141.24 Aligned_cols=155 Identities=19% Similarity=0.242 Sum_probs=103.2
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~e 289 (793)
.|+++|..++|||||+.++.... +.. +....++.+.....+.+++ ..++||||+|+..|...
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~--f~~--------------~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l 65 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT--FCE--------------ACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI 65 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC--CCC--------------cCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHH
Confidence 47899999999999999997542 110 0011122233334455555 67899999999999998
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchhHH-HHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQTRF-VTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt~~-~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
....++.+|++|+|+|.++...-+... ++..+.. .++|+|+|.||+|+...+. -..++..++...+ ..+
T Consensus 66 ~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~-v~~~~~~~~a~~~------~~~ 138 (202)
T cd04120 66 TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDRE-ISRQQGEKFAQQI------TGM 138 (202)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccc-cCHHHHHHHHHhc------CCC
Confidence 889999999999999999754333322 2233332 3578899999999864321 1111222221111 135
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
+++.+||++|. |++++|++|.+.+
T Consensus 139 ~~~etSAktg~----------gV~e~F~~l~~~~ 162 (202)
T cd04120 139 RFCEASAKDNF----------NVDEIFLKLVDDI 162 (202)
T ss_pred EEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 68999999998 8888888887655
No 232
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.51 E-value=7e-14 Score=137.05 Aligned_cols=154 Identities=17% Similarity=0.235 Sum_probs=99.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|.+|+|||||+++++..... .. ...+. + .... ..+..++ ..+.||||||+..|..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~--~~~t~----------~-~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI--EK--YDPTI----------E-DFYR--KEIEVDSSPSVLEILDTAGTEQFAS 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CC--CCCch----------h-heEE--EEEEECCEEEEEEEEECCCcccccc
Confidence 37899999999999999999754211 10 00000 0 0111 1222233 4678999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCc-hhHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
.....++.+|++|+|+|.++...- ....++..+.. .++|+++|.||+|+...+.. ...+...+.. ..
T Consensus 65 ~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~-~~~~~~~~~~-------~~ 136 (163)
T cd04176 65 MRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREV-SSAEGRALAE-------EW 136 (163)
T ss_pred hHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCcc-CHHHHHHHHH-------Hh
Confidence 888889999999999999874321 12233333332 46899999999998643211 1111111111 12
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
..|++++||++|. |+.++++.+.+.+
T Consensus 137 ~~~~~~~Sa~~~~----------~v~~l~~~l~~~l 162 (163)
T cd04176 137 GCPFMETSAKSKT----------MVNELFAEIVRQM 162 (163)
T ss_pred CCEEEEecCCCCC----------CHHHHHHHHHHhc
Confidence 3578999999998 9999999987654
No 233
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.51 E-value=1.2e-13 Score=136.81 Aligned_cols=158 Identities=20% Similarity=0.230 Sum_probs=102.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++++... +.. +....+........+.+++ +.++||||||+.+|..
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~--~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 66 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGR--FPE--------------RTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRK 66 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCC--------------ccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHH
Confidence 479999999999999999997531 110 0111122222233344444 6889999999998864
Q ss_pred -HHHHHhhccCcEEEEEeCCCCCCchhHHHH-HHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccc
Q psy1760 289 -EVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 289 -ev~~~l~~aD~allVVDa~~g~~~qt~~~l-~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~ 362 (793)
.....++.+|++++|+|+++....+....| ..+.. .++|+++|.||+|+...+.. ..++..++.. .
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~-------~ 138 (170)
T cd04115 67 SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQV-PTDLAQRFAD-------A 138 (170)
T ss_pred hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCC-CHHHHHHHHH-------H
Confidence 466678899999999999876544444333 33333 35899999999998654311 1112222211 1
Q ss_pred cCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 363 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 363 l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
..+|++.+||+++.+. .++.+++..+...+
T Consensus 139 ~~~~~~e~Sa~~~~~~-------~~i~~~f~~l~~~~ 168 (170)
T cd04115 139 HSMPLFETSAKDPSEN-------DHVEAIFMTLAHKL 168 (170)
T ss_pred cCCcEEEEeccCCcCC-------CCHHHHHHHHHHHh
Confidence 2367999999994311 27888888887654
No 234
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.51 E-value=1e-13 Score=134.93 Aligned_cols=154 Identities=17% Similarity=0.144 Sum_probs=101.6
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee--cCeEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY--NGTRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~--~~~~i~iiDTPGh~df~~e 289 (793)
+|+++|.+|+|||||+++|+........ .+.++.......+.+ ....+++|||||+..|...
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 65 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKH----------------ESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHAL 65 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc----------------CCccceeEEEEEEEECCEEEEEEEEECCchHHHHHh
Confidence 6899999999999999999865221100 011111111222222 2357899999999888887
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchhH-HHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
....++.+|++++|+|++++...+.. .++..+.. .++|+++|+||+|+...+. ...+++.+.... ...
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~-~~~~~~~~~~~~-------~~~ 137 (162)
T cd04123 66 GPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRV-VSKSEAEEYAKS-------VGA 137 (162)
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC-CCHHHHHHHHHH-------cCC
Confidence 77788999999999999875433222 22222222 3688999999999875321 112233333222 245
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
+++++||+++. |+++++++|.+.+
T Consensus 138 ~~~~~s~~~~~----------gi~~~~~~l~~~~ 161 (162)
T cd04123 138 KHFETSAKTGK----------GIEELFLSLAKRM 161 (162)
T ss_pred EEEEEeCCCCC----------CHHHHHHHHHHHh
Confidence 78999999998 9999999987654
No 235
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.51 E-value=8.9e-14 Score=139.77 Aligned_cols=155 Identities=16% Similarity=0.168 Sum_probs=104.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|..++|||||+.+|.... +.. .....|.+ ...+.+++..+++|||||+..|....
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~--~~~-------------~~pt~g~~----~~~~~~~~~~~~i~D~~Gq~~~~~~~ 78 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGE--IVT-------------TIPTIGFN----VETVEYKNISFTVWDVGGQDKIRPLW 78 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCC--Ccc-------------ccCCccee----EEEEEECCEEEEEEECCCCHHHHHHH
Confidence 479999999999999999996431 110 01111222 23456778999999999999998888
Q ss_pred HHHhhccCcEEEEEeCCCCCCc-hhHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccc-cccC
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE-EQLD 364 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~-~~l~ 364 (793)
...++.+|++|+|+|+++...- .....+..... .+.|+++|.||+|++++.. .+++.+.+ +... ....
T Consensus 79 ~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~l---~l~~~~~~~ 152 (181)
T PLN00223 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKL---GLHSLRQRH 152 (181)
T ss_pred HHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC---HHHHHHHh---CccccCCCc
Confidence 8889999999999999874221 11222222211 3678999999999976532 23333332 2111 1113
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
+.++.+||++|. |+.+++++|.+.+-
T Consensus 153 ~~~~~~Sa~~g~----------gv~e~~~~l~~~~~ 178 (181)
T PLN00223 153 WYIQSTCATSGE----------GLYEGLDWLSNNIA 178 (181)
T ss_pred eEEEeccCCCCC----------CHHHHHHHHHHHHh
Confidence 456789999998 99999999977653
No 236
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.51 E-value=6.5e-14 Score=138.80 Aligned_cols=155 Identities=15% Similarity=0.104 Sum_probs=98.3
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec--CeEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~--~~~i~iiDTPGh~df~~e 289 (793)
+|+++|++++|||||++++.......... .+........+.++ .+.+++|||||+.+|...
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~-----------------~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 64 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYV-----------------PTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL 64 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCC-----------------CceeeeeEEEEEECCEEEEEEEEeCCCccccccc
Confidence 68999999999999999998652111000 00001111123333 356789999999998877
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchhH--HHHHHHH--HcCCccEEEEecccCCCCChhh-----------hHhHHHHHHh
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQTR--FVTRKAL--KLGFKPIVVVNKIDRSNARPEW-----------VVDATFDLFD 354 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~--~~~ip~IvvINKiD~~~a~~~~-----------v~~~i~~~~~ 354 (793)
....++.+|++|+|+|..+.-..+.. .+...+. ..+.|+++|+||+|+.+..... ..++......
T Consensus 65 ~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 144 (174)
T cd04135 65 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAK 144 (174)
T ss_pred ccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 77778899999999999875322222 1222222 3578999999999986532110 0111122211
Q ss_pred hhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 355 KLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 355 ~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.++ ..+++.+||++|. |++++++.++..+
T Consensus 145 ~~~------~~~~~e~Sa~~~~----------gi~~~f~~~~~~~ 173 (174)
T cd04135 145 EIG------AHCYVECSALTQK----------GLKTVFDEAILAI 173 (174)
T ss_pred HcC------CCEEEEecCCcCC----------CHHHHHHHHHHHh
Confidence 111 1368999999998 9999999987653
No 237
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.51 E-value=1.1e-13 Score=138.09 Aligned_cols=155 Identities=18% Similarity=0.156 Sum_probs=101.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee------------cCeEEEEe
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY------------NGTRINII 278 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~------------~~~~i~ii 278 (793)
.+|+++|.+|+|||||++++.......... ..+..+.....+.+ ....+.||
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 68 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFI----------------TTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLW 68 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCC----------------CccceEEEEEEEEEcCccccccccCCCEEEEEEE
Confidence 478999999999999999997542111000 01111111111222 23678999
Q ss_pred cCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhH-HHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHH
Q psy1760 279 DTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLF 353 (793)
Q Consensus 279 DTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~ 353 (793)
||||+..|.......++.+|++|+|+|+++...-+.. .++..... .+.|+++|.||+|+...+. ...++..++.
T Consensus 69 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~-v~~~~~~~~~ 147 (180)
T cd04127 69 DTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ-VSEEQAKALA 147 (180)
T ss_pred eCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCc-cCHHHHHHHH
Confidence 9999999988888899999999999999863222222 22233332 2578899999999965421 1112233322
Q ss_pred hhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 354 DKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 354 ~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.. ..+|++.+||++|. |++++++.|.+.+
T Consensus 148 ~~-------~~~~~~e~Sak~~~----------~v~~l~~~l~~~~ 176 (180)
T cd04127 148 DK-------YGIPYFETSAATGT----------NVEKAVERLLDLV 176 (180)
T ss_pred HH-------cCCeEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 22 24679999999998 8999999887644
No 238
>KOG1423|consensus
Probab=99.50 E-value=5.2e-13 Score=138.70 Aligned_cols=165 Identities=21% Similarity=0.236 Sum_probs=114.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCccc-----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD----- 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d----- 285 (793)
-+|+++|.||+|||||.|.|++. ...++.++..+|+......+.-+...+.|.||||...
T Consensus 73 L~vavIG~PNvGKStLtN~mig~---------------kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r 137 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIGQ---------------KVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHR 137 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhCC---------------ccccccccccceeeeeeEEEecCceEEEEecCCcccccchhh
Confidence 47999999999999999999987 2344556667788888888888899999999999532
Q ss_pred -------chHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHc-CCccEEEEecccCCCCChhhhHhHH--------
Q psy1760 286 -------FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL-GFKPIVVVNKIDRSNARPEWVVDAT-------- 349 (793)
Q Consensus 286 -------f~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~-~ip~IvvINKiD~~~a~~~~v~~~i-------- 349 (793)
+..+...++..||.+++|+|+.+.-.+..-.++..+.++ .+|-|+|+||+|..... .++-.+
T Consensus 138 ~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k--~~Ll~l~~~Lt~g~ 215 (379)
T KOG1423|consen 138 RHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQK--RLLLNLKDLLTNGE 215 (379)
T ss_pred hHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhh--hHHhhhHHhccccc
Confidence 334566788999999999999863222233455555554 67889999999986532 122222
Q ss_pred --------HHHHhhhcc---cccccCc----cEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 350 --------FDLFDKLCA---TEEQLDF----PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 350 --------~~~~~~l~~---~~~~l~~----Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
++.|.+... ......+ .||++||++|. |+++|-++|....|+-
T Consensus 216 l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~----------GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 216 LAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGE----------GIKDLKQYLMSQAPPG 273 (379)
T ss_pred cchhhhhHHHHhccCCcccccccccCcccceeEEEEeccccc----------CHHHHHHHHHhcCCCC
Confidence 222221110 0000011 28999999998 8888888887776653
No 239
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.50 E-value=8.9e-14 Score=137.03 Aligned_cols=155 Identities=14% Similarity=0.115 Sum_probs=98.0
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+|+++|.+|+|||||+++|+.......... . .................+.+|||||+.+|.....
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~----~-----------~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~ 66 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVP----T-----------VFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRP 66 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCC----c-----------eeeeeEEEEEECCEEEEEEEEeCCCcccccccch
Confidence 688999999999999999986532100000 0 0001111122223346799999999998766666
Q ss_pred HHhhccCcEEEEEeCCCCCCchh--HHHHHHHHH--cCCccEEEEecccCCCCChhh----------hHhHHHHHHhhhc
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQT--RFVTRKALK--LGFKPIVVVNKIDRSNARPEW----------VVDATFDLFDKLC 357 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~qt--~~~l~~~~~--~~ip~IvvINKiD~~~a~~~~----------v~~~i~~~~~~l~ 357 (793)
..++.+|++++|+|+.+....+. ..++..... .++|+++|+||+|+...+... ..++..+.....+
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 146 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIG 146 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhC
Confidence 66788999999999987422221 123333333 258999999999997654221 1122222222211
Q ss_pred ccccccCccEEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 358 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 358 ~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
..+++.+||++|. |++++++.|.+
T Consensus 147 ------~~~~~~~Sa~~~~----------gi~~l~~~i~~ 170 (171)
T cd00157 147 ------AIGYMECSALTQE----------GVKEVFEEAIR 170 (171)
T ss_pred ------CeEEEEeecCCCC----------CHHHHHHHHhh
Confidence 1379999999998 99999998864
No 240
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.50 E-value=9.3e-14 Score=122.31 Aligned_cols=82 Identities=22% Similarity=0.418 Sum_probs=72.8
Q ss_pred ceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe-c---c
Q psy1760 410 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT-G---I 485 (793)
Q Consensus 410 ~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~-g---l 485 (793)
|+++||+++++++.|+++++||++|+|++||.|++... + .+++|.+|+.+ +.++.++++|.||||+++. | +
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~--~--~~~~i~~l~~~-~~~~~~~~~~~aGdI~~v~~g~~~l 75 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMST--G--KEYEVEEVGIF-RPEMTPTDELSAGQVGYIIAGIKTV 75 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecC--C--CeEEEEEEEEE-CCCccCCceECCCCEEEEEcccccc
Confidence 68999999999999999999999999999999998754 3 35789999955 7888999999999999995 4 6
Q ss_pred ceeecCCeEeC
Q psy1760 486 EEICIGSTICD 496 (793)
Q Consensus 486 ~~i~iGdtl~~ 496 (793)
+++.+|||||+
T Consensus 76 ~~~~~Gdtl~~ 86 (86)
T cd03699 76 KDARVGDTITL 86 (86)
T ss_pred CccccccEeeC
Confidence 77899999984
No 241
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.50 E-value=6.7e-14 Score=137.73 Aligned_cols=156 Identities=19% Similarity=0.226 Sum_probs=97.1
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCccc-chHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD-FGGEV 290 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d-f~~ev 290 (793)
+|+++|.+|+|||||+++++.....-.. .+.. + +.......+......+.||||||+.. +....
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~-----------~~t~---~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 65 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEY-----------DPNL---E-SLYSRQVTIDGEQVSLEILDTAGQQQADTEQL 65 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcccccc-----------CCCh---H-HhceEEEEECCEEEEEEEEECCCCcccccchH
Confidence 4789999999999999999753210000 0000 0 11111222333345788999999985 45667
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhH-HHHHHHHH-----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~-----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.+.++.+|++|+|+|+++....+.. .++..+.. .++|+|+|.||+|+...+.-. .++...... ...
T Consensus 66 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~-~~~~~~~~~-------~~~ 137 (165)
T cd04146 66 ERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVS-TEEGEKLAS-------ELG 137 (165)
T ss_pred HHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccC-HHHHHHHHH-------HcC
Confidence 7889999999999999875332222 22222222 368999999999986432111 112222211 123
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.|++.+||++|. .|++++++.+.+.+
T Consensus 138 ~~~~e~Sa~~~~---------~~v~~~f~~l~~~~ 163 (165)
T cd04146 138 CLFFEVSAAEDY---------DGVHSVFHELCREV 163 (165)
T ss_pred CEEEEeCCCCCc---------hhHHHHHHHHHHHH
Confidence 578999999983 27889999887654
No 242
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.50 E-value=1e-13 Score=137.99 Aligned_cols=154 Identities=15% Similarity=0.199 Sum_probs=102.6
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~e 289 (793)
+|+++|..|+|||||+.++..... ... ...++ +.. ....+.+++ ..++||||||..+|...
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~f--~~~--~~~t~----------~~~---~~~~~~~~~~~~~l~i~Dt~G~~~~~~l 66 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSF--PDY--HDPTI----------EDA---YKQQARIDNEPALLDILDTAGQAEFTAM 66 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC--CCC--cCCcc----------cce---EEEEEEECCEEEEEEEEeCCCchhhHHH
Confidence 789999999999999999975421 100 00000 100 111233344 56889999999999888
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchhHH-HHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQTRF-VTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt~~-~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
....++.+|++|+|+|.++....+... ++..+. ..++|+++|.||+|+...+.- ..++..++.. ...
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v-~~~~~~~~a~-------~~~ 138 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQV-TTEEGRNLAR-------EFN 138 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCcc-CHHHHHHHHH-------HhC
Confidence 888999999999999998765444432 222222 246899999999998653211 1112222211 124
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
+|++.+||++|. |++++|+.|...+-
T Consensus 139 ~~~~e~Sa~~~~----------~v~~~f~~l~~~~~ 164 (172)
T cd04141 139 CPFFETSAALRH----------YIDDAFHGLVREIR 164 (172)
T ss_pred CEEEEEecCCCC----------CHHHHHHHHHHHHH
Confidence 689999999998 89999999886653
No 243
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.49 E-value=1.5e-13 Score=139.04 Aligned_cols=156 Identities=15% Similarity=0.196 Sum_probs=101.5
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~e 289 (793)
+|+++|.+++|||||+++|+....... ......|.+... ..+..++ ..+++|||||...|...
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~-------------~~~~t~~~~~~~--~~~~~~~~~~~l~i~D~~G~~~~~~~ 66 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVG-------------PYQNTIGAAFVA--KRMVVGERVVTLGIWDTAGSERYEAM 66 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCc-------------CcccceeeEEEE--EEEEECCEEEEEEEEECCCchhhhhh
Confidence 589999999999999999985421110 001111212211 2334444 46779999999888777
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHHc--CCccEEEEecccCCCCCh--hhh-HhHHHHHHhhhccccccc
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALKL--GFKPIVVVNKIDRSNARP--EWV-VDATFDLFDKLCATEEQL 363 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~~--~ip~IvvINKiD~~~a~~--~~v-~~~i~~~~~~l~~~~~~l 363 (793)
....++.+|++|+|+|.++....+. ..++..+... +.|+++|+||+|+..... ..+ .+++.++.. ..
T Consensus 67 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-------~~ 139 (193)
T cd04118 67 SRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFAD-------EI 139 (193)
T ss_pred hHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHH-------Hc
Confidence 7777889999999999987432221 2344444433 689999999999864321 111 122332221 12
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
..+++.+||++|. |+++|++.|.+.+
T Consensus 140 ~~~~~~~Sa~~~~----------gv~~l~~~i~~~~ 165 (193)
T cd04118 140 KAQHFETSSKTGQ----------NVDELFQKVAEDF 165 (193)
T ss_pred CCeEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 3578999999998 9999999998765
No 244
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.49 E-value=1.8e-13 Score=137.63 Aligned_cols=155 Identities=14% Similarity=0.154 Sum_probs=102.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++++|||||+.++... ... + .....|.. ...+.+.+..+++|||||+..|....
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~--~~~----------~---~~~T~~~~----~~~~~~~~~~~~l~D~~G~~~~~~~~ 78 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLG--EVV----------T---TIPTIGFN----VETVEYKNLKFTMWDVGGQDKLRPLW 78 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcC--Ccc----------c---cCCccccc----eEEEEECCEEEEEEECCCCHhHHHHH
Confidence 47999999999999999999632 111 0 01111222 22355678999999999999988888
Q ss_pred HHHhhccCcEEEEEeCCCCC-CchhHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
...++.+|++|+|+|+++.. .......+..... ...|+++|.||.|+.+.... +++.+.+..... ....+
T Consensus 79 ~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~l~~~~~--~~~~~ 153 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMST---TEVTEKLGLHSV--RQRNW 153 (182)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCH---HHHHHHhCCCcc--cCCcE
Confidence 88899999999999997631 1112222332221 35788999999998654211 222222211111 11235
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
+++.+||++|. |+++++++|.+.+
T Consensus 154 ~~~~~Sa~tg~----------gv~e~~~~l~~~i 177 (182)
T PTZ00133 154 YIQGCCATTAQ----------GLYEGLDWLSANI 177 (182)
T ss_pred EEEeeeCCCCC----------CHHHHHHHHHHHH
Confidence 67789999998 9999999997755
No 245
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.49 E-value=6.8e-14 Score=119.69 Aligned_cols=74 Identities=26% Similarity=0.478 Sum_probs=64.1
Q ss_pred cCCCceEEEEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHh-cCce
Q psy1760 508 IDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRR-EGYE 586 (793)
Q Consensus 508 ~~~P~~~~~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrr-eg~e 586 (793)
||+|++++++.+.+. + +..+|.++|.++.++||+|++.+++++++ ++|+||||+||+|++++|++ +|++
T Consensus 1 ~p~Pv~~~~i~p~~~---~------d~~kl~~aL~~l~~eDP~l~~~~d~et~e-~~l~g~Gelhlev~~~~L~~~~~v~ 70 (75)
T PF14492_consen 1 FPPPVLSVAIEPKNK---E------DEPKLSEALQKLSEEDPSLRVERDEETGE-LILSGMGELHLEVLLERLKRRFGVE 70 (75)
T ss_dssp SSS-SEEEEEEESSH---H------HHHHHHHHHHHHHHH-TTSEEEEETTTSE-EEEEESSHHHHHHHHHHHHHTTCEB
T ss_pred CCCCeEEEEEEECCH---h------HHHHHHHHHHHHHhcCCeEEEEEcchhce-EEEEECCHHHHHHHHHHHHHHHCCe
Confidence 578999999998753 1 34689999999999999999999999999 99999999999999999996 5999
Q ss_pred EEEec
Q psy1760 587 LSVSR 591 (793)
Q Consensus 587 ~~vs~ 591 (793)
+.+++
T Consensus 71 v~~~~ 75 (75)
T PF14492_consen 71 VEFGK 75 (75)
T ss_dssp EEEE-
T ss_pred eEecC
Confidence 99874
No 246
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.49 E-value=2.4e-13 Score=133.30 Aligned_cols=158 Identities=20% Similarity=0.262 Sum_probs=101.5
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEe-ecCeEEEEecCCCcccchHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE-YNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~-~~~~~i~iiDTPGh~df~~ev 290 (793)
+|+++|.+++|||||+++|......+... .....|.........+. .....+.+|||||+..|...+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~------------~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 69 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKN------------YLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMV 69 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcc------------CCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHH
Confidence 58999999999999999997532222110 00111222222222222 234789999999999888888
Q ss_pred HHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH--cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK--LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~--~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
...+..+|++++|+|.++...... ..++..+.. .+.|.++|+||+|+...+. +..+..+.+. .....|+
T Consensus 70 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~------~~~~~~~ 141 (164)
T cd04101 70 SNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAE--VTDAQAQAFA------QANQLKF 141 (164)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccC--CCHHHHHHHH------HHcCCeE
Confidence 889999999999999986422211 223333333 3589999999999865321 1111111111 1123578
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
+.+||++|. |++++++.|.+.+
T Consensus 142 ~~~Sa~~~~----------gi~~l~~~l~~~~ 163 (164)
T cd04101 142 FKTSALRGV----------GYEEPFESLARAF 163 (164)
T ss_pred EEEeCCCCC----------ChHHHHHHHHHHh
Confidence 999999998 9999999987653
No 247
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.49 E-value=2.1e-13 Score=139.16 Aligned_cols=156 Identities=19% Similarity=0.212 Sum_probs=104.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|.+|+|||||+++|+...... +....+..+.....+.+++ ..+.||||||+..|..
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 70 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFSG----------------SYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRT 70 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC----------------CcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHH
Confidence 489999999999999999997542100 0001111222233444444 5788999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH--cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK--LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~--~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
.....++.+|++++|+|+++...-+. ..++..... ...|+++|+||+|+..... ...++...+... ..+
T Consensus 71 ~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~-~~~~~~~~~~~~-------~~~ 142 (199)
T cd04110 71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKV-VETEDAYKFAGQ-------MGI 142 (199)
T ss_pred HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccc-cCHHHHHHHHHH-------cCC
Confidence 88889999999999999987432222 223333332 2478899999999875321 112222222211 246
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
+++.+||++|. |+++++++|...+.
T Consensus 143 ~~~e~Sa~~~~----------gi~~lf~~l~~~~~ 167 (199)
T cd04110 143 SLFETSAKENI----------NVEEMFNCITELVL 167 (199)
T ss_pred EEEEEECCCCc----------CHHHHHHHHHHHHH
Confidence 79999999998 99999999987664
No 248
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.48 E-value=1.6e-13 Score=161.14 Aligned_cols=146 Identities=27% Similarity=0.354 Sum_probs=106.8
Q ss_pred ecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH-----HH
Q psy1760 217 AHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE-----VE 291 (793)
Q Consensus 217 G~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e-----v~ 291 (793)
|.+|+|||||+|+|.+.. ......+|+|++.....+.+++..++++||||+.++... +.
T Consensus 1 G~pNvGKSSL~N~Ltg~~----------------~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~ 64 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN----------------QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVA 64 (591)
T ss_pred CCCCCCHHHHHHHHhCCC----------------CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHH
Confidence 789999999999997541 112335799999988899999999999999999887542 22
Q ss_pred H-H--hhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEE
Q psy1760 292 R-I--LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVI 368 (793)
Q Consensus 292 ~-~--l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi 368 (793)
+ . ...+|++++|+|+++. .+.......+.+.++|+++|+||+|+.+.+.. ..+.+.+- +.+++|++
T Consensus 65 ~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i--~~d~~~L~-------~~lg~pvv 133 (591)
T TIGR00437 65 RDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKGI--RIDEEKLE-------ERLGVPVV 133 (591)
T ss_pred HHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCC--hhhHHHHH-------HHcCCCEE
Confidence 2 2 2468999999999873 23444555666789999999999998643211 11122211 12357899
Q ss_pred EeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 369 YTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 369 ~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
++||++|. |++++++.+.+..
T Consensus 134 ~tSA~tg~----------Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 134 PTSATEGR----------GIERLKDAIRKAI 154 (591)
T ss_pred EEECCCCC----------CHHHHHHHHHHHh
Confidence 99999998 9999999997654
No 249
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.48 E-value=2.8e-13 Score=139.95 Aligned_cols=156 Identities=15% Similarity=0.098 Sum_probs=103.2
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec---CeEEEEecCCCcccchH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---GTRINIIDTPGHADFGG 288 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~---~~~i~iiDTPGh~df~~ 288 (793)
+|+++|.+|+|||||+++|....... +..+-++.+.....+.+. ...++||||||+..|..
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~----------------~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~ 65 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGK----------------SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGK 65 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCC----------------CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHH
Confidence 58899999999999999997542110 001112223333334443 46889999999998888
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHHc------CCccEEEEecccCCCCChhhhHhHHHHHHhhhccccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALKL------GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 361 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~~------~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~ 361 (793)
.....++.+|++|+|+|+++....+ ...++..+... +.|+++|.||+|+...+. ...++...+...
T Consensus 66 l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~-v~~~~~~~~~~~------ 138 (215)
T cd04109 66 MLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT-VKDDKHARFAQA------ 138 (215)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccc-cCHHHHHHHHHH------
Confidence 8888899999999999998642222 22233333332 346789999999964321 112222222211
Q ss_pred ccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 362 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 362 ~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
..++++.+||++|. |++++++.|...+..
T Consensus 139 -~~~~~~~iSAktg~----------gv~~lf~~l~~~l~~ 167 (215)
T cd04109 139 -NGMESCLVSAKTGD----------RVNLLFQQLAAELLG 167 (215)
T ss_pred -cCCEEEEEECCCCC----------CHHHHHHHHHHHHHh
Confidence 23578999999998 999999999877643
No 250
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.48 E-value=1.6e-13 Score=138.71 Aligned_cols=162 Identities=14% Similarity=0.097 Sum_probs=102.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
++|+++|.+|+|||||+++++....... ...++ +... .....+......++||||||+.+|....
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~----~~~t~----------~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~ 65 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQV----YEPTV----------FENY-VHDIFVDGLHIELSLWDTAGQEEFDRLR 65 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCc----cCCcc----------eeee-EEEEEECCEEEEEEEEECCCChhccccc
Confidence 3689999999999999999975421100 00000 0010 1111122223678999999999887766
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhH--HHHHHHHH--cCCccEEEEecccCCCCChhh-h----------HhHHHHHHhh
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALK--LGFKPIVVVNKIDRSNARPEW-V----------VDATFDLFDK 355 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~--~~ip~IvvINKiD~~~a~~~~-v----------~~~i~~~~~~ 355 (793)
...++.+|++|+|+|.++....+.. .++..+.. .+.|+++|.||+|+...+... . .++..++...
T Consensus 66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 145 (189)
T cd04134 66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKR 145 (189)
T ss_pred cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence 6678899999999998875333322 23334433 368899999999997643211 0 0111111111
Q ss_pred hcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCc
Q psy1760 356 LCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 403 (793)
Q Consensus 356 l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 403 (793)
...++++.+||++|. |++++|+.|.+.+..|.
T Consensus 146 ------~~~~~~~e~SAk~~~----------~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 146 ------INALRYLECSAKLNR----------GVNEAFTEAARVALNVR 177 (189)
T ss_pred ------cCCCEEEEccCCcCC----------CHHHHHHHHHHHHhccc
Confidence 112578999999998 99999999988776554
No 251
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.48 E-value=3.4e-13 Score=134.21 Aligned_cols=159 Identities=24% Similarity=0.336 Sum_probs=115.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcc------
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA------ 284 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~------ 284 (793)
.-|+++|.+|+|||||+|+|+++... ......+|.|.......+. + .+.|+|.||+.
T Consensus 25 ~EIaF~GRSNVGKSSlIN~l~~~k~L--------------ArtSktPGrTq~iNff~~~--~-~~~lVDlPGYGyAkv~k 87 (200)
T COG0218 25 PEIAFAGRSNVGKSSLINALTNQKNL--------------ARTSKTPGRTQLINFFEVD--D-ELRLVDLPGYGYAKVPK 87 (200)
T ss_pred cEEEEEccCcccHHHHHHHHhCCcce--------------eecCCCCCccceeEEEEec--C-cEEEEeCCCcccccCCH
Confidence 46899999999999999999986321 2345667888877665553 3 38999999962
Q ss_pred ----cchHHHHHHhh---ccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCC-ChhhhHhHHHHHHhhh
Q psy1760 285 ----DFGGEVERILS---MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-RPEWVVDATFDLFDKL 356 (793)
Q Consensus 285 ----df~~ev~~~l~---~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a-~~~~v~~~i~~~~~~l 356 (793)
.....+..++. ...++++++|+.+++....++.++.+...++|++|++||+|+... ...+.+..+.+.+.
T Consensus 88 ~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~-- 165 (200)
T COG0218 88 EVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELK-- 165 (200)
T ss_pred HHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhc--
Confidence 23334444443 357899999999999999999999999999999999999999863 23344455554332
Q ss_pred cccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 357 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 357 ~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
.......+ ++..|+.++. |+++|.+.|.+.+-
T Consensus 166 -~~~~~~~~-~~~~ss~~k~----------Gi~~l~~~i~~~~~ 197 (200)
T COG0218 166 -KPPPDDQW-VVLFSSLKKK----------GIDELKAKILEWLK 197 (200)
T ss_pred -CCCCccce-EEEEeccccc----------CHHHHHHHHHHHhh
Confidence 21110011 7888999887 89999998877653
No 252
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.47 E-value=2.4e-13 Score=135.07 Aligned_cols=156 Identities=19% Similarity=0.176 Sum_probs=100.8
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~e 289 (793)
.|+++|..++|||||+++++.....-. -.+.+........+..++ ..++||||||+..|...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~----------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKN----------------YKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCI 65 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC----------------CCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhh
Confidence 578999999999999999986521100 001111111122333333 57899999999999888
Q ss_pred HHHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHHcC----CccEEEEecccCCCCChhhh-HhHHHHHHhhhccccccc
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALKLG----FKPIVVVNKIDRSNARPEWV-VDATFDLFDKLCATEEQL 363 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~~~----ip~IvvINKiD~~~a~~~~v-~~~i~~~~~~l~~~~~~l 363 (793)
....++.+|++++|+|+.+..... ...++....+.. .|+|+|.||+|+...+.... .++...... +.
T Consensus 66 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~-------~~ 138 (170)
T cd04108 66 ASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAA-------EM 138 (170)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHH-------Hc
Confidence 888899999999999997632222 223333333322 45789999999865422111 122222211 12
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
..+++.+||++|. |++++++.|.+.+.
T Consensus 139 ~~~~~e~Sa~~g~----------~v~~lf~~l~~~~~ 165 (170)
T cd04108 139 QAEYWSVSALSGE----------NVREFFFRVAALTF 165 (170)
T ss_pred CCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 3578999999998 99999998877653
No 253
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.47 E-value=2.9e-13 Score=136.53 Aligned_cols=158 Identities=20% Similarity=0.232 Sum_probs=101.6
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+|+++|..++|||||+++|+....... .....|.+.......+......+.+|||||+.+|.....
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~ 67 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSES--------------TKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNN 67 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC--------------CCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHH
Confidence 689999999999999999985421100 011112222222222222345788999999999988888
Q ss_pred HHhhccCcEEEEEeCCCCCCchhH-HHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
..++.+|++|+|+|+++.-..... .++..... ...|.++|.||+|+...+... .++...+.. ...+|+
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~-~~~~~~~~~-------~~~~~~ 139 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVD-SNIAKSFCD-------SLNIPF 139 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCC-HHHHHHHHH-------HcCCeE
Confidence 899999999999999874322211 22233332 246889999999987432110 111111111 124579
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+.+||++|. |++++++.|.+.+..
T Consensus 140 ~evSa~~~~----------~i~~~f~~l~~~~~~ 163 (188)
T cd04125 140 FETSAKQSI----------NVEEAFILLVKLIIK 163 (188)
T ss_pred EEEeCCCCC----------CHHHHHHHHHHHHHH
Confidence 999999998 888888888776643
No 254
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.47 E-value=2.3e-13 Score=134.85 Aligned_cols=154 Identities=14% Similarity=0.110 Sum_probs=97.0
Q ss_pred eeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchHHH
Q psy1760 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGEV 290 (793)
Q Consensus 213 IaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ev 290 (793)
|+++|.+|+|||||+++++......... .. ........+.+++ ..+.+|||||+.+|....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 63 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYV----------------PT-VFENYSADVEVDGKPVELGLWDTAGQEDYDRLR 63 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCC----------------Cc-EEeeeeEEEEECCEEEEEEEEECCCCcccchhc
Confidence 5789999999999999998642211000 00 0011111233333 468999999999888777
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhH--HHHHHHHH--cCCccEEEEecccCCCCCh--hh---------hHhHHHHHHhh
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALK--LGFKPIVVVNKIDRSNARP--EW---------VVDATFDLFDK 355 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~--~~ip~IvvINKiD~~~a~~--~~---------v~~~i~~~~~~ 355 (793)
...++.+|++|+|+|.++...-+.. .++..... .+.|+|+|.||+|+..... .. ..++...+...
T Consensus 64 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (174)
T smart00174 64 PLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR 143 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH
Confidence 7788999999999999864221111 23333333 3789999999999865211 00 01111111111
Q ss_pred hcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 356 LCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 356 l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
++ ..+++.+||++|. |++++++.+.+.+
T Consensus 144 ~~------~~~~~e~Sa~~~~----------~v~~lf~~l~~~~ 171 (174)
T smart00174 144 IG------AVKYLECSALTQE----------GVREVFEEAIRAA 171 (174)
T ss_pred cC------CcEEEEecCCCCC----------CHHHHHHHHHHHh
Confidence 11 1368999999998 9999999987654
No 255
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.47 E-value=4.4e-13 Score=138.82 Aligned_cols=159 Identities=19% Similarity=0.210 Sum_probs=103.3
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+|+++|.+++|||||+++|+.... ... -.|+........+..+.+.||||||+..|.....
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f--~~~-----------------~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~ 62 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRF--KDT-----------------VSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGS 62 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC--CCC-----------------CCccceEEEEEEeeEEEEEEEeCCCcccchhhHH
Confidence 588999999999999999985421 100 0122222222345567899999999999988888
Q ss_pred HHhhccCcEEEEEeCCCCCCchhH-HHHHHHHH---cCCccEEEEecccCCCC------------------ChhhhHhHH
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNA------------------RPEWVVDAT 349 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~ip~IvvINKiD~~~a------------------~~~~v~~~i 349 (793)
..++.+|++|+|+|+++....... .+|..+.. .++|+|+|.||+|+... ...-..++.
T Consensus 63 ~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~ 142 (220)
T cd04126 63 MYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDA 142 (220)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHH
Confidence 889999999999999874322222 23333332 35788999999998651 011112222
Q ss_pred HHHHhhhccc---cc----ccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 350 FDLFDKLCAT---EE----QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 350 ~~~~~~l~~~---~~----~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
..+....+.. .+ ...+|++.+||++|. |++++|+.+.+.+
T Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~----------~V~elf~~i~~~~ 189 (220)
T cd04126 143 KAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY----------NVDELFEYLFNLV 189 (220)
T ss_pred HHHHHHhCccccccccccccccceEEEeeCCCCC----------CHHHHHHHHHHHH
Confidence 2322222210 00 112679999999998 8888998887655
No 256
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.47 E-value=2.6e-13 Score=140.66 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=104.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|..|+|||||+++++..... . .....-|.++.............+.||||||+.+|....
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~--~------------~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 79 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFE--K------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR 79 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCC--C------------ccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhh
Confidence 48999999999999999998754211 0 011112333332222222335789999999999998877
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHH-HHHHHH--HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRF-VTRKAL--KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~-~l~~~~--~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
...++.+|++|+|+|.++....+... ++..+. ..++|+++|.||+|+...... .+++ .+ .. ...+++
T Consensus 80 ~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~--~~~~-~~-~~------~~~~~~ 149 (219)
T PLN03071 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQV-TF-HR------KKNLQY 149 (219)
T ss_pred HHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCC--HHHH-HH-HH------hcCCEE
Confidence 78889999999999998754333322 223332 246899999999998643211 1122 11 11 124678
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
+.+||++|. |++++|++|.+.+.
T Consensus 150 ~e~SAk~~~----------~i~~~f~~l~~~~~ 172 (219)
T PLN03071 150 YEISAKSNY----------NFEKPFLYLARKLA 172 (219)
T ss_pred EEcCCCCCC----------CHHHHHHHHHHHHH
Confidence 999999998 89999999887664
No 257
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.46 E-value=1.6e-13 Score=129.86 Aligned_cols=148 Identities=24% Similarity=0.222 Sum_probs=99.6
Q ss_pred eeecccCCcceehhhhhhccCccccccccccccccchhhccccceEE-eeeeeEEe--ecCeEEEEecCCCcccchHHHH
Q psy1760 215 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITI-FSKNCSIE--YNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 215 IiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi-~~~~~~~~--~~~~~i~iiDTPGh~df~~ev~ 291 (793)
++|++|+|||||+++|........ ....|. ......+. ..+..+++|||||+.++.....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 63 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE-----------------EYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRR 63 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc-----------------ccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHH
Confidence 579999999999999986532100 001111 11111222 2367899999999999888888
Q ss_pred HHhhccCcEEEEEeCCCCCCchhHHHH-----HHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQTRFVT-----RKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~qt~~~l-----~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
..++.+|++++|+|+..+........+ ......+.|+++++||+|+.......... ....+. .....|
T Consensus 64 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~-~~~~~~------~~~~~~ 136 (157)
T cd00882 64 LYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE-LAEQLA------KELGVP 136 (157)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH-HHHHHH------hhcCCc
Confidence 889999999999999986544444332 33445678999999999997643222211 011111 122468
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHH
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAIL 396 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~ 396 (793)
++.+|+.++. |+..++++|.
T Consensus 137 ~~~~s~~~~~----------~i~~~~~~l~ 156 (157)
T cd00882 137 YFETSAKTGE----------NVEELFEELA 156 (157)
T ss_pred EEEEecCCCC----------ChHHHHHHHh
Confidence 9999999997 8889998874
No 258
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.46 E-value=5e-13 Score=135.33 Aligned_cols=155 Identities=16% Similarity=0.198 Sum_probs=105.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|..++|||||+.++....... +....++.......+..++ ..++||||||+..|..
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~~----------------~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~ 70 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTES----------------PYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCT 70 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHH
Confidence 489999999999999999997531110 0011122222333344444 6789999999999998
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHH--cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK--LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~--~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
.....++.+|++|||+|.++...-+ ...++..+.. .+.|+|+|.||+|+...+. -..++.+++... ..+
T Consensus 71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~-v~~~~~~~~a~~-------~~~ 142 (189)
T cd04121 71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQ-VATEQAQAYAER-------NGM 142 (189)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccC-CCHHHHHHHHHH-------cCC
Confidence 8888899999999999998743222 2334444443 3678899999999965431 113333333321 246
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
+++.+||++|. |++++|+.|...+
T Consensus 143 ~~~e~SAk~g~----------~V~~~F~~l~~~i 166 (189)
T cd04121 143 TFFEVSPLCNF----------NITESFTELARIV 166 (189)
T ss_pred EEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 79999999998 8888888887654
No 259
>PLN03110 Rab GTPase; Provisional
Probab=99.46 E-value=3.7e-13 Score=139.17 Aligned_cols=157 Identities=18% Similarity=0.196 Sum_probs=106.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++++|||||+++|+...... +..+.+..+.....+.+++ ..++||||||+..|..
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~----------------~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~ 76 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCL----------------ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA 76 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC----------------CCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 589999999999999999997542111 1111122222223344443 6889999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH-HHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.....++.+|++|+|+|..+....+.. .++..+.. .++|+++|.||+|+...+ .+..+....+.. ...
T Consensus 77 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~~~~~~l~~------~~~ 148 (216)
T PLN03110 77 ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLR--SVAEEDGQALAE------KEG 148 (216)
T ss_pred HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccccc--CCCHHHHHHHHH------HcC
Confidence 888889999999999999874332222 33344433 368999999999986432 111111122211 124
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+|++.+||++|. |++++++.|...+..
T Consensus 149 ~~~~e~SA~~g~----------~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 149 LSFLETSALEAT----------NVEKAFQTILLEIYH 175 (216)
T ss_pred CEEEEEeCCCCC----------CHHHHHHHHHHHHHH
Confidence 789999999998 899999999877754
No 260
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.46 E-value=6.4e-13 Score=138.28 Aligned_cols=179 Identities=20% Similarity=0.133 Sum_probs=117.6
Q ss_pred ccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH
Q psy1760 210 DKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 289 (793)
Q Consensus 210 e~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 289 (793)
...|+++|++|+|||||+++|+..... .......|. + ..+..++.+++++||||+. ..
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~--------------~~~~~~~g~-i----~i~~~~~~~i~~vDtPg~~---~~ 96 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTK--------------QNISDIKGP-I----TVVTGKKRRLTFIECPNDI---NA 96 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhccc--------------Ccccccccc-E----EEEecCCceEEEEeCCchH---HH
Confidence 357999999999999999999765211 111122342 1 1122367899999999964 56
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccE-EEEecccCCCC--ChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI-VVVNKIDRSNA--RPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~I-vvINKiD~~~a--~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
+...+..+|.+++|+|+.++...++..++..+...++|.+ +|+||+|+... +.+++.+++++.+..-.. ...|
T Consensus 97 ~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~----~~~k 172 (225)
T cd01882 97 MIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVY----QGAK 172 (225)
T ss_pred HHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhC----CCCc
Confidence 6777899999999999999999999999999998999965 49999999643 234445555553321111 1358
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEee
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEY 419 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~ 419 (793)
++++||++..... ......++..|...-+.+....+..--|.+.++++
T Consensus 173 i~~iSa~~~~~~~-----~~e~~~~~r~i~~~~~~~~~~r~~r~y~~~~~~~~ 220 (225)
T cd01882 173 LFYLSGIVHGRYP-----KTEIHNLARFISVMKFRPLNWRNSHPYVLADRMED 220 (225)
T ss_pred EEEEeeccCCCCC-----HHHHHHHHHHHHhCCCCCCeeecCCCeEEEeeeec
Confidence 9999999874221 11234455555333344433344444556655544
No 261
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.45 E-value=4.9e-13 Score=141.02 Aligned_cols=158 Identities=17% Similarity=0.205 Sum_probs=103.6
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~e 289 (793)
+|+++|.+|+|||||+++++... +.. ... .+..+.....+.+++ +.++||||+|+.+|...
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~--f~~--~y~-------------pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~ 64 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGR--FEE--QYT-------------PTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAM 64 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCC--CCC--CCC-------------CChhHhEEEEEEECCEEEEEEEEECCCChhhhHH
Confidence 58999999999999999998542 110 000 000011112233344 67889999999999876
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH------------cCCccEEEEecccCCCCChhhhHhHHHHHHhhh
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK------------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 356 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~------------~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l 356 (793)
....+..+|++|+|+|.++...-+. ..++..+.. .++|+|+|.||+|+...+ ....+++.+.+..
T Consensus 65 ~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~-~v~~~ei~~~~~~- 142 (247)
T cd04143 65 RRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPR-EVQRDEVEQLVGG- 142 (247)
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcc-ccCHHHHHHHHHh-
Confidence 6667889999999999987422111 222233322 367899999999996532 1223344433321
Q ss_pred cccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCc
Q psy1760 357 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 403 (793)
Q Consensus 357 ~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 403 (793)
...++++.+||++|. |++++++.|......|.
T Consensus 143 -----~~~~~~~evSAktg~----------gI~elf~~L~~~~~~p~ 174 (247)
T cd04143 143 -----DENCAYFEVSAKKNS----------NLDEMFRALFSLAKLPN 174 (247)
T ss_pred -----cCCCEEEEEeCCCCC----------CHHHHHHHHHHHhcccc
Confidence 113578999999998 99999999988765554
No 262
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.45 E-value=4.2e-13 Score=135.04 Aligned_cols=155 Identities=18% Similarity=0.229 Sum_probs=100.5
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~e 289 (793)
+++++|..++|||||+.+++....... ....-|... ....+..++ ..+.||||+|+..|...
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~--------------~~~T~g~~~--~~~~i~~~~~~~~l~iwDt~G~~~~~~~ 65 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDED--------------YIQTLGVNF--MEKTISIRGTEITFSIWDLGGQREFINM 65 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC--------------CCCccceEE--EEEEEEECCEEEEEEEEeCCCchhHHHh
Confidence 578999999999999999975421100 001112222 122344444 67899999999999888
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH---cCCccEEEEecccCCCCC----hhhhHhHHHHHHhhhccccc
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNAR----PEWVVDATFDLFDKLCATEE 361 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~ip~IvvINKiD~~~a~----~~~v~~~i~~~~~~l~~~~~ 361 (793)
....++.+|++++|+|.++....+. ..++..+.. ...| |+|.||+|+.... ...+.++..++..
T Consensus 66 ~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~------- 137 (182)
T cd04128 66 LPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAK------- 137 (182)
T ss_pred hHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHH-------
Confidence 8888999999999999987432222 233344433 2345 7889999985321 1112222222211
Q ss_pred ccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 362 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 362 ~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
....+++++||++|. |++++++.+.+.+.
T Consensus 138 ~~~~~~~e~SAk~g~----------~v~~lf~~l~~~l~ 166 (182)
T cd04128 138 AMKAPLIFCSTSHSI----------NVQKIFKIVLAKAF 166 (182)
T ss_pred HcCCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 123678999999998 99999999887664
No 263
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.45 E-value=4.3e-13 Score=133.86 Aligned_cols=156 Identities=15% Similarity=0.183 Sum_probs=97.5
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+++++|.+|+|||||+.+++... +.. ....+..+ .......+......++||||||..+|.....
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~--f~~--~~~~t~~~-----------~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNA--FPG--EYIPTVFD-----------NYSANVMVDGKPVNLGLWDTAGQEDYDRLRP 67 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCC--cCCCccee-----------eeEEEEEECCEEEEEEEEECCCchhhhhhhh
Confidence 68999999999999999997532 110 00000000 0011112222336788999999999988777
Q ss_pred HHhhccCcEEEEEeCCCCCCchhH-H-HHHHHHH--cCCccEEEEecccCCCCCh--hhh---------HhHHHHHHhhh
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQTR-F-VTRKALK--LGFKPIVVVNKIDRSNARP--EWV---------VDATFDLFDKL 356 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~qt~-~-~l~~~~~--~~ip~IvvINKiD~~~a~~--~~v---------~~~i~~~~~~l 356 (793)
..++.+|++|+|+|.++....+.. . ++..+.. .+.|+|+|.||+|+...+. +.. .++..++..++
T Consensus 68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 147 (174)
T cd01871 68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 147 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 788999999999999874333332 1 2233332 2579999999999964321 000 11111111111
Q ss_pred cccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 357 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 357 ~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
+ ..+++.+||++|. |++++++.+.+.
T Consensus 148 ~------~~~~~e~Sa~~~~----------~i~~~f~~l~~~ 173 (174)
T cd01871 148 G------AVKYLECSALTQK----------GLKTVFDEAIRA 173 (174)
T ss_pred C------CcEEEEecccccC----------CHHHHHHHHHHh
Confidence 1 2478999999998 999999988653
No 264
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.45 E-value=6.3e-13 Score=132.82 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=97.9
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~e 289 (793)
+++++|..++|||||+.++..... ... ...+. |... ...+.+++ +.++||||||+.+|...
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f--~~~--~~pt~----------~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKF--PSE--YVPTV----------FDNY---AVTVMIGGEPYTLGLFDTAGQEDYDRL 65 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--CCC--CCCce----------eeee---EEEEEECCEEEEEEEEECCCccchhhh
Confidence 689999999999999999985421 100 00000 1111 11233444 67889999999999877
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchhH-H-HHHHHHH--cCCccEEEEecccCCCCChhhhHhHHHHH---------Hhhh
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQTR-F-VTRKALK--LGFKPIVVVNKIDRSNARPEWVVDATFDL---------FDKL 356 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt~-~-~l~~~~~--~~ip~IvvINKiD~~~a~~~~v~~~i~~~---------~~~l 356 (793)
....++.+|++|+|+|.++...-+.. . ++..+.. .++|+|+|.||+|+.... ...+.+... ...+
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~--~~~~~l~~~~~~~v~~~~~~~~ 143 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP--STIEKLAKNKQKPITPETGEKL 143 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhCh--hhHHHhhhccCCCcCHHHHHHH
Confidence 77788999999999999875333222 2 3333332 367899999999986431 111111100 0001
Q ss_pred ccccccc-CccEEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 357 CATEEQL-DFPVIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 357 ~~~~~~l-~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
. ... .++++.+||++|. |++++++.++.
T Consensus 144 a---~~~~~~~~~e~SA~tg~----------~v~~~f~~~~~ 172 (175)
T cd01874 144 A---RDLKAVKYVECSALTQK----------GLKNVFDEAIL 172 (175)
T ss_pred H---HHhCCcEEEEecCCCCC----------CHHHHHHHHHH
Confidence 0 011 2579999999998 99999998865
No 265
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.45 E-value=5.4e-13 Score=136.25 Aligned_cols=151 Identities=17% Similarity=0.238 Sum_probs=100.9
Q ss_pred eecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHHHHhh
Q psy1760 216 IAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILS 295 (793)
Q Consensus 216 iG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~~~l~ 295 (793)
+|..++|||||+.+++... +... ....-|.+.......+.-+...++||||||+..|......+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~--f~~~------------~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~ 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE--FEKK------------YVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYI 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC--CCCC------------CCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhc
Confidence 5899999999999998431 1100 0001122332222222223578999999999999998889999
Q ss_pred ccCcEEEEEeCCCCCCchhH-HHHHHHHH--cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEeec
Q psy1760 296 MVDNVLLLIDAVEGPMPQTR-FVTRKALK--LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSA 372 (793)
Q Consensus 296 ~aD~allVVDa~~g~~~qt~-~~l~~~~~--~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA 372 (793)
.+|++|+|+|+++....+.. .++..+.. .++|+|+|.||+|+...... .+++ ++. ....++++.+||
T Consensus 67 ~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~--~~~~-~~~-------~~~~~~~~e~SA 136 (200)
T smart00176 67 QGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVK--AKSI-TFH-------RKKNLQYYDISA 136 (200)
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCC--HHHH-HHH-------HHcCCEEEEEeC
Confidence 99999999999986544333 23333443 46899999999998542211 1111 111 123567999999
Q ss_pred CCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 373 LHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 373 ~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
++|. |+.++|+.|...+.
T Consensus 137 k~~~----------~v~~~F~~l~~~i~ 154 (200)
T smart00176 137 KSNY----------NFEKPFLWLARKLI 154 (200)
T ss_pred CCCC----------CHHHHHHHHHHHHH
Confidence 9998 89999999987663
No 266
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.44 E-value=3e-13 Score=128.99 Aligned_cols=137 Identities=28% Similarity=0.300 Sum_probs=98.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCC----cccc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPG----HADF 286 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPG----h~df 286 (793)
++|.++|.+++|||||+++|.+......+. ..+.|.+ ++||||| +..|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~KT-------------------------q~i~~~~---~~IDTPGEyiE~~~~ 53 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKKT-------------------------QAIEYYD---NTIDTPGEYIENPRF 53 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCcc-------------------------ceeEecc---cEEECChhheeCHHH
Confidence 468999999999999999997653222211 2233433 5799999 4567
Q ss_pred hHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 287 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 287 ~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
...+......||.+++|.||++... .+--..+..++.|+|=||||+|+... ++-++..++.|...+.. .
T Consensus 54 y~aLi~ta~dad~V~ll~dat~~~~---~~pP~fa~~f~~pvIGVITK~Dl~~~--~~~i~~a~~~L~~aG~~------~ 122 (143)
T PF10662_consen 54 YHALIVTAQDADVVLLLQDATEPRS---VFPPGFASMFNKPVIGVITKIDLPSD--DANIERAKKWLKNAGVK------E 122 (143)
T ss_pred HHHHHHHHhhCCEEEEEecCCCCCc---cCCchhhcccCCCEEEEEECccCccc--hhhHHHHHHHHHHcCCC------C
Confidence 7777777889999999999997421 12223455667899999999999832 23344555666666654 2
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHH
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAIL 396 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~ 396 (793)
+|.+|+.+|. |+++|.+.|.
T Consensus 123 if~vS~~~~e----------Gi~eL~~~L~ 142 (143)
T PF10662_consen 123 IFEVSAVTGE----------GIEELKDYLE 142 (143)
T ss_pred eEEEECCCCc----------CHHHHHHHHh
Confidence 6999999998 9999998874
No 267
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.44 E-value=1e-12 Score=128.16 Aligned_cols=154 Identities=26% Similarity=0.324 Sum_probs=101.3
Q ss_pred eeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccc------
Q psy1760 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF------ 286 (793)
Q Consensus 213 IaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df------ 286 (793)
|+++|++|+|||||++.|++...... .+...+.|..... +.+.+ .+.++||||+.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~--------------~~~~~~~t~~~~~--~~~~~-~~~~~D~~g~~~~~~~~~~ 64 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLAR--------------TSKTPGKTQLINF--FNVND-KFRLVDLPGYGYAKVSKEV 64 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceee--------------ecCCCCcceeEEE--EEccC-eEEEecCCCccccccCHHH
Confidence 78999999999999999984321111 1112233333222 23333 8999999998653
Q ss_pred ----hHHHHHHh---hccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCC-hhhhHhHHHHHHhhhcc
Q psy1760 287 ----GGEVERIL---SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKLCA 358 (793)
Q Consensus 287 ----~~ev~~~l---~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~-~~~v~~~i~~~~~~l~~ 358 (793)
...+...+ ..++++++++|+...........++.+...+.|+++++||+|+.... .......+...+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~--- 141 (170)
T cd01876 65 KEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKL--- 141 (170)
T ss_pred HHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh---
Confidence 22222333 34678999999988777777777888888899999999999985422 12222233222221
Q ss_pred cccccCccEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 359 TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 359 ~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
.....|++++||+++. ++.++++.|.++
T Consensus 142 --~~~~~~~~~~Sa~~~~----------~~~~l~~~l~~~ 169 (170)
T cd01876 142 --FEIDPPIILFSSLKGQ----------GIDELRALIEKW 169 (170)
T ss_pred --ccCCCceEEEecCCCC----------CHHHHHHHHHHh
Confidence 1223579999999998 899999988765
No 268
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.44 E-value=6.1e-13 Score=133.76 Aligned_cols=156 Identities=14% Similarity=0.018 Sum_probs=98.9
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec---CeEEEEecCCCcccchH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---GTRINIIDTPGHADFGG 288 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~---~~~i~iiDTPGh~df~~ 288 (793)
+|+++|.+|+|||||+++|+.....-... + +........+... ...+.||||||+.+|..
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~----------------~-t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~ 64 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYV----------------P-TVFENYVTNIQGPNGKIIELALWDTAGQEEYDR 64 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCC----------------C-eeeeeeEEEEEecCCcEEEEEEEECCCchhHHH
Confidence 68999999999999999998642110000 0 0000001112222 35789999999999887
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH-HHH-HHHH--HcCCccEEEEecccCCCCChh--h-hHhHHHHHHhhhccccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR-FVT-RKAL--KLGFKPIVVVNKIDRSNARPE--W-VVDATFDLFDKLCATEE 361 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~-~~l-~~~~--~~~ip~IvvINKiD~~~a~~~--~-v~~~i~~~~~~l~~~~~ 361 (793)
.....++.+|++|+|+|+++....+.. ..| .... ..++|+|+|.||+|+...... . ..++..++....+
T Consensus 65 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~---- 140 (187)
T cd04132 65 LRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQG---- 140 (187)
T ss_pred HHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcC----
Confidence 777788999999999999874332222 122 2222 236899999999998653210 0 1122222222221
Q ss_pred ccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 362 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 362 ~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
..+++.+||++|. |++++++.+.+.+.
T Consensus 141 --~~~~~e~Sa~~~~----------~v~~~f~~l~~~~~ 167 (187)
T cd04132 141 --AFAYLECSAKTME----------NVEEVFDTAIEEAL 167 (187)
T ss_pred --CcEEEEccCCCCC----------CHHHHHHHHHHHHH
Confidence 1278999999998 88889988876654
No 269
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.43 E-value=5.6e-13 Score=133.27 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=111.9
Q ss_pred ccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH
Q psy1760 210 DKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 289 (793)
Q Consensus 210 e~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 289 (793)
..+|.++|..|+|||||+++|... .... ... |.......+.++++.++++|.+|+..+...
T Consensus 14 ~~~ililGl~~sGKTtll~~l~~~--~~~~-------------~~p----T~g~~~~~i~~~~~~~~~~d~gG~~~~~~~ 74 (175)
T PF00025_consen 14 EIKILILGLDGSGKTTLLNRLKNG--EISE-------------TIP----TIGFNIEEIKYKGYSLTIWDLGGQESFRPL 74 (175)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHSS--SEEE-------------EEE----ESSEEEEEEEETTEEEEEEEESSSGGGGGG
T ss_pred EEEEEEECCCccchHHHHHHhhhc--cccc-------------cCc----ccccccceeeeCcEEEEEEecccccccccc
Confidence 358999999999999999999643 1110 111 333445677889999999999999999888
Q ss_pred HHHHhhccCcEEEEEeCCCCC-CchhHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 290 VERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
+...+..+|++|+|||+++.- ..+.+..+..+.. .++|++|++||.|++++-. .+++.+.+.-.... ....
T Consensus 75 w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~---~~~i~~~l~l~~l~-~~~~ 150 (175)
T PF00025_consen 75 WKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMS---EEEIKEYLGLEKLK-NKRP 150 (175)
T ss_dssp GGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSST---HHHHHHHTTGGGTT-SSSC
T ss_pred ceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcch---hhHHHhhhhhhhcc-cCCc
Confidence 888999999999999998632 2334444444332 4689999999999987532 23344433211111 2335
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
+.++.+||.+|. |+.+.+++|.+.
T Consensus 151 ~~v~~~sa~~g~----------Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 151 WSVFSCSAKTGE----------GVDEGLEWLIEQ 174 (175)
T ss_dssp EEEEEEBTTTTB----------THHHHHHHHHHH
T ss_pred eEEEeeeccCCc----------CHHHHHHHHHhc
Confidence 779999999998 999999998765
No 270
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.43 E-value=5.4e-13 Score=132.58 Aligned_cols=152 Identities=18% Similarity=0.109 Sum_probs=96.1
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec--CeEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~--~~~i~iiDTPGh~df~~e 289 (793)
+++++|.+|+|||||+.+++........ ..+..+.....+..+ ...+.+|||||+..|...
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 64 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEY-----------------VPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKL 64 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC-----------------CCceeeeeeEEEEECCEEEEEEEEECCCChhhccc
Confidence 5789999999999999998754211000 011111111223333 357889999999888777
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchh--HHHHHHHHH--cCCccEEEEecccCCCCC----------hhh-hHhHHHHHHh
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQT--RFVTRKALK--LGFKPIVVVNKIDRSNAR----------PEW-VVDATFDLFD 354 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt--~~~l~~~~~--~~ip~IvvINKiD~~~a~----------~~~-v~~~i~~~~~ 354 (793)
....++.+|++|+|+|.++...-+. ..++..+.. .+.|++++.||+|+.... ... ..++...+..
T Consensus 65 ~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~ 144 (173)
T cd04130 65 RPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAE 144 (173)
T ss_pred cccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHH
Confidence 6677889999999999987533222 223333433 368899999999986421 001 1111222211
Q ss_pred hhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHH
Q psy1760 355 KLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAIL 396 (793)
Q Consensus 355 ~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~ 396 (793)
..+ ..+++++||++|. |++++++.++
T Consensus 145 ~~~------~~~~~e~Sa~~~~----------~v~~lf~~~~ 170 (173)
T cd04130 145 KIG------ACEYIECSALTQK----------NLKEVFDTAI 170 (173)
T ss_pred HhC------CCeEEEEeCCCCC----------CHHHHHHHHH
Confidence 111 1368999999998 9999998874
No 271
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.42 E-value=9.9e-13 Score=133.28 Aligned_cols=163 Identities=13% Similarity=0.106 Sum_probs=102.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|..++|||||+.+++... +... ...++ |... .....+.-..+.++||||||+..|....
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~--f~~~--~~~t~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~ 68 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNA--FPKE--YIPTV----------FDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLR 68 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC--CCcC--CCCce----------Eeee-EEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 378999999999999999998542 1110 00000 1111 1111222223678999999999998877
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHH-HH-HHHHH--cCCccEEEEecccCCCCChhhhHhHHHHH---------Hhhhc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRF-VT-RKALK--LGFKPIVVVNKIDRSNARPEWVVDATFDL---------FDKLC 357 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~-~l-~~~~~--~~ip~IvvINKiD~~~a~~~~v~~~i~~~---------~~~l~ 357 (793)
...++.+|++|+|+|.++...-+... .| ..+.. .++|+++|.||.|+.+.+. ..+.+.+. ...+.
T Consensus 69 ~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~--~~~~~~~~~~~~v~~~~~~~~a 146 (191)
T cd01875 69 TLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDAD--TLKKLKEQGQAPITPQQGGALA 146 (191)
T ss_pred hhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChh--hHHHHhhccCCCCCHHHHHHHH
Confidence 77889999999999998743322221 23 22222 3689999999999965421 11111110 00010
Q ss_pred ccccccC-ccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCc
Q psy1760 358 ATEEQLD-FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 403 (793)
Q Consensus 358 ~~~~~l~-~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 403 (793)
.... ++++.+||++|. |++++|+.+.+.+-.|.
T Consensus 147 ---~~~~~~~~~e~SAk~g~----------~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 147 ---KQIHAVKYLECSALNQD----------GVKEVFAEAVRAVLNPT 180 (191)
T ss_pred ---HHcCCcEEEEeCCCCCC----------CHHHHHHHHHHHHhccc
Confidence 1122 578999999998 99999999988775553
No 272
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.42 E-value=5.9e-13 Score=132.04 Aligned_cols=154 Identities=18% Similarity=0.113 Sum_probs=96.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec--CeEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~--~~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++++|||||+++|+......... .+. +... ...+.++ ...+.+|||||+.++..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~----~t~----------~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYV----PTV----------FENY---VADIEVDGKQVELALWDTAGQEDYDR 64 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCC----Ccc----------ccce---EEEEEECCEEEEEEEEeCCCchhhhh
Confidence 478999999999999999998642110000 000 0011 1223333 35689999999988877
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH-H-HHHHHHH--cCCccEEEEecccCCCCChhhhHhHH-------------HH
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR-F-VTRKALK--LGFKPIVVVNKIDRSNARPEWVVDAT-------------FD 351 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~-~-~l~~~~~--~~ip~IvvINKiD~~~a~~~~v~~~i-------------~~ 351 (793)
.....+..+|++++|+|..+....... . ++..+.. .++|+++|+||+|+.... ...+++ +.
T Consensus 65 ~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~i~~~~~~~v~~~~~~~ 142 (175)
T cd01870 65 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE--HTRRELAKMKQEPVKPEEGRD 142 (175)
T ss_pred ccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccCh--hhhhhhhhccCCCccHHHHHH
Confidence 666678899999999998753211111 1 2222222 378999999999986431 111111 11
Q ss_pred HHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 352 LFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 352 ~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
+...+ ..++++++||++|. |++++++.|...+
T Consensus 143 ~~~~~------~~~~~~~~Sa~~~~----------~v~~lf~~l~~~~ 174 (175)
T cd01870 143 MANKI------GAFGYMECSAKTKE----------GVREVFEMATRAA 174 (175)
T ss_pred HHHHc------CCcEEEEeccccCc----------CHHHHHHHHHHHh
Confidence 11111 12478999999998 9999999987543
No 273
>PLN03108 Rab family protein; Provisional
Probab=99.42 E-value=1.2e-12 Score=134.87 Aligned_cols=155 Identities=15% Similarity=0.125 Sum_probs=102.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++++|||||+++|+......... ..-|.+... ..+.+++ ..+++|||||+..|..
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~--------------~ti~~~~~~--~~i~~~~~~i~l~l~Dt~G~~~~~~ 70 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--------------LTIGVEFGA--RMITIDNKPIKLQIWDTAGQESFRS 70 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------------CCccceEEE--EEEEECCEEEEEEEEeCCCcHHHHH
Confidence 479999999999999999997542111000 011222222 2233333 5688999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH-HHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.....++.+|++|+|+|+++....+.. .++..+.. .++|++++.||+|+...+. ...++..++... ..
T Consensus 71 ~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~ 142 (210)
T PLN03108 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA-VSTEEGEQFAKE-------HG 142 (210)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccC-CCHHHHHHHHHH-------cC
Confidence 888889999999999999874322222 22332322 3678899999999875431 112233333221 24
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
+|++.+||+++. |++++|+.+...+
T Consensus 143 ~~~~e~Sa~~~~----------~v~e~f~~l~~~~ 167 (210)
T PLN03108 143 LIFMEASAKTAQ----------NVEEAFIKTAAKI 167 (210)
T ss_pred CEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 679999999998 8888887776655
No 274
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.42 E-value=9.1e-13 Score=131.90 Aligned_cols=157 Identities=16% Similarity=0.148 Sum_probs=102.1
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+++++|+.++|||+|+.++.... +... ...++ |.+. .....+.-...+++||||+|+..|.....
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~--f~~~--~~~Ti----------~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~ 67 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNK--FPTD--YIPTV----------FDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRP 67 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CCCC--CCCcc----------eeee-EEEEEECCEEEEEEEEECCCCccccccch
Confidence 68999999999999999998542 2110 00000 1111 11111222236789999999999988888
Q ss_pred HHhhccCcEEEEEeCCCCCCchhH--HHHHHHHH--cCCccEEEEecccCCCCCh--------hhh-HhHHHHHHhhhcc
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQTR--FVTRKALK--LGFKPIVVVNKIDRSNARP--------EWV-VDATFDLFDKLCA 358 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~--~~ip~IvvINKiD~~~a~~--------~~v-~~~i~~~~~~l~~ 358 (793)
..++.+|++|+|+|.++...-+.. .++..+.. .++|+|+|.||+|+.+.+. ..+ .++..++...
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~--- 144 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ--- 144 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH---
Confidence 889999999999999875433332 34444432 3678899999999864321 011 1222222111
Q ss_pred cccccCc-cEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 359 TEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 359 ~~~~l~~-Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
... +++.+||++|. |++++|+.+.+.+-
T Consensus 145 ----~~~~~~~E~SAk~~~----------nV~~~F~~~~~~~~ 173 (176)
T cd04133 145 ----IGAAAYIECSSKTQQ----------NVKAVFDAAIKVVL 173 (176)
T ss_pred ----cCCCEEEECCCCccc----------CHHHHHHHHHHHHh
Confidence 133 58999999998 99999999987653
No 275
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.41 E-value=2.5e-12 Score=126.38 Aligned_cols=153 Identities=20% Similarity=0.203 Sum_probs=99.9
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~e 289 (793)
+|+++|.+++|||||+.+++..... . +..+.+........+..++ ..+.+|||||...|...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~--~--------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 65 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFH--S--------------SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTI 65 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC--C--------------CCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhh
Confidence 5889999999999999999754211 0 0011122222223344444 57889999999999888
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
....++.+|++++|+|..+.-.-+. ..++..+.. .++|+++|.||+|+...+.. ..++...+.. ....
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v-~~~~~~~~~~-------~~~~ 137 (161)
T cd04117 66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQV-GDEQGNKLAK-------EYGM 137 (161)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCC-CHHHHHHHHH-------HcCC
Confidence 8888999999999999886422111 222232222 25788999999998654311 1122222211 1235
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
|++.+||++|. |++++++.|.+.
T Consensus 138 ~~~e~Sa~~~~----------~v~~~f~~l~~~ 160 (161)
T cd04117 138 DFFETSACTNS----------NIKESFTRLTEL 160 (161)
T ss_pred EEEEEeCCCCC----------CHHHHHHHHHhh
Confidence 78999999998 999999998653
No 276
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.41 E-value=1.3e-12 Score=129.57 Aligned_cols=158 Identities=15% Similarity=0.044 Sum_probs=98.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+++++|.+|+|||||+++++...-.. . . . ...-|... ....+.+++ ..++++||+|...|..
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~~-~--~-------~---~~T~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~~~ 69 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFSL-N--A-------Y---SPTIKPRY--AVNTVEVYGQEKYLILREVGEDEVAIL 69 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCc-c--c-------C---CCccCcce--EEEEEEECCeEEEEEEEecCCcccccc
Confidence 378999999999999999998642110 0 0 0 00001111 112233444 5688999999988877
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHH-HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKAL-KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~-~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
.....++.+|++|+|+|+++....+. ..+++... ..++|+++|+||+|+...+.. ...+..++...++. .+
T Consensus 70 ~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~------~~ 142 (169)
T cd01892 70 LNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQR-YEVQPDEFCRKLGL------PP 142 (169)
T ss_pred cchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccc-cccCHHHHHHHcCC------CC
Confidence 77777899999999999977421111 12233221 236899999999998643211 11111222111221 13
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
++++||++|. |++.+++.|.+.+-
T Consensus 143 ~~~~Sa~~~~----------~v~~lf~~l~~~~~ 166 (169)
T cd01892 143 PLHFSSKLGD----------SSNELFTKLATAAQ 166 (169)
T ss_pred CEEEEeccCc----------cHHHHHHHHHHHhh
Confidence 5899999998 89999999877653
No 277
>KOG0073|consensus
Probab=99.40 E-value=3.6e-12 Score=121.24 Aligned_cols=144 Identities=23% Similarity=0.349 Sum_probs=104.6
Q ss_pred ccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH
Q psy1760 210 DKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 289 (793)
Q Consensus 210 e~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 289 (793)
+-.|-|+|..||||||++++|++.. ......-.| .....+.++++.+++||..|+..+..-
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~---------------~~~i~pt~g----f~Iktl~~~~~~L~iwDvGGq~~lr~~ 76 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGED---------------TDTISPTLG----FQIKTLEYKGYTLNIWDVGGQKTLRSY 76 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCC---------------ccccCCccc----eeeEEEEecceEEEEEEcCCcchhHHH
Confidence 3588999999999999999998762 222233333 344678889999999999999999999
Q ss_pred HHHHhhccCcEEEEEeCCCCC-CchhHHHHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 290 VERILSMVDNVLLLIDAVEGP-MPQTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
+..++..+|+.|+|+|.++.. +.++...++.+. -.|.|++|+.||.|++++-..+.+..+.++ ..+. ....
T Consensus 77 W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L-~~l~---ks~~ 152 (185)
T KOG0073|consen 77 WKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDL-EELA---KSHH 152 (185)
T ss_pred HHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCH-HHhc---cccC
Confidence 999999999999999997642 344444444443 357899999999999865322222222221 1221 2336
Q ss_pred ccEEEeecCCCC
Q psy1760 365 FPVIYTSALHGY 376 (793)
Q Consensus 365 ~Pvi~~SA~~g~ 376 (793)
++++-+||.+|.
T Consensus 153 ~~l~~cs~~tge 164 (185)
T KOG0073|consen 153 WRLVKCSAVTGE 164 (185)
T ss_pred ceEEEEeccccc
Confidence 899999999998
No 278
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.40 E-value=5.3e-13 Score=123.87 Aligned_cols=107 Identities=26% Similarity=0.309 Sum_probs=79.6
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccc-----
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF----- 286 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df----- 286 (793)
.|+++|.+|+|||||+|+|++.. ........+.|.......+.+++..+.|+||||..+-
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~---------------~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~ 65 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK---------------LAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDN 65 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST---------------SSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccc---------------cccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhH
Confidence 37899999999999999998642 1122333456666655667789999999999998542
Q ss_pred ----hHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEec
Q psy1760 287 ----GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNK 334 (793)
Q Consensus 287 ----~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINK 334 (793)
.....+.+..+|++++|+|+.+....+...+++.+. .+.|+++|+||
T Consensus 66 ~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 66 DGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 223445568899999999988743444566667775 88999999998
No 279
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.40 E-value=1.4e-12 Score=134.50 Aligned_cols=156 Identities=19% Similarity=0.146 Sum_probs=101.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec---CeEEEEecCCCcccch
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---GTRINIIDTPGHADFG 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~---~~~i~iiDTPGh~df~ 287 (793)
.+|+++|.+|+|||||+++|+....... ..+.+..+.....+.+. ...+++|||||+..|.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~----------------~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~ 66 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV----------------SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFR 66 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC----------------CCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHH
Confidence 4799999999999999999985421110 00111222222233332 3578999999999998
Q ss_pred HHHHHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccc
Q psy1760 288 GEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 288 ~ev~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~ 362 (793)
......++.+|++|+|+|.++...-. ...++..+.. ...|.++|.||+|+...+. ...++...+.. .
T Consensus 67 ~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~-v~~~~~~~~~~-------~ 138 (211)
T cd04111 67 SITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQ-VTREEAEKLAK-------D 138 (211)
T ss_pred HHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccc-cCHHHHHHHHH-------H
Confidence 88888899999999999998742211 1223333322 2456688999999865321 11122222221 1
Q ss_pred cCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 363 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 363 l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
...+++.+||++|. |++++++.|.+.+.
T Consensus 139 ~~~~~~e~Sak~g~----------~v~e~f~~l~~~~~ 166 (211)
T cd04111 139 LGMKYIETSARTGD----------NVEEAFELLTQEIY 166 (211)
T ss_pred hCCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 23679999999998 89999999887664
No 280
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.38 E-value=3.8e-12 Score=134.37 Aligned_cols=171 Identities=20% Similarity=0.147 Sum_probs=102.4
Q ss_pred HHHHHHHHhhhhccc-hHHHHHHhhcccccccccceeeeecccCCcceehhhhhhccCccccccccccccccchhhcccc
Q psy1760 179 IRVLSEDIGKMLGCG-AHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKER 257 (793)
Q Consensus 179 IRsL~~dIg~~L~~~-a~l~~LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~er 257 (793)
+-|+++++...|... .....|++...-..+ -..|.++|+||+|||||+.++......+ ...+
T Consensus 137 ~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~-~pTivVaG~PNVGKSSlv~~lT~AkpEv----------------A~YP 199 (346)
T COG1084 137 VASIIKKIDDDLEFLRKARDHLKKLPAIDPD-LPTIVVAGYPNVGKSSLVRKLTTAKPEV----------------APYP 199 (346)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcCCCCCCC-CCeEEEecCCCCcHHHHHHHHhcCCCcc----------------CCCC
Confidence 444455555444331 122334443332211 1589999999999999999997653332 2234
Q ss_pred ceEEeeeeeEEeecCeEEEEecCCCcccch----HHH----HHHhh-ccCcEEEEEeCCCC--CC--chhHHHHHHHH-H
Q psy1760 258 GITIFSKNCSIEYNGTRINIIDTPGHADFG----GEV----ERILS-MVDNVLLLIDAVEG--PM--PQTRFVTRKAL-K 323 (793)
Q Consensus 258 GiTi~~~~~~~~~~~~~i~iiDTPGh~df~----~ev----~~~l~-~aD~allVVDa~~g--~~--~qt~~~l~~~~-~ 323 (793)
-+|-.....++++++.++++|||||.-|-- .++ ..+++ ..+++|+++|+++. .. .|- .+++..+ .
T Consensus 200 FTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~-~L~~eIk~~ 278 (346)
T COG1084 200 FTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQI-SLLEEIKEL 278 (346)
T ss_pred ccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHH-HHHHHHHHh
Confidence 566677778999999999999999986521 122 22343 35788999999853 22 232 2344333 4
Q ss_pred cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEeecCCCC
Q psy1760 324 LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 376 (793)
Q Consensus 324 ~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~ 376 (793)
+..|+++|+||+|.... +-++++...+...+..+ .+.+|+..+.
T Consensus 279 f~~p~v~V~nK~D~~~~---e~~~~~~~~~~~~~~~~------~~~~~~~~~~ 322 (346)
T COG1084 279 FKAPIVVVINKIDIADE---EKLEEIEASVLEEGGEE------PLKISATKGC 322 (346)
T ss_pred cCCCeEEEEecccccch---hHHHHHHHHHHhhcccc------ccceeeeehh
Confidence 56789999999998742 22333333333333221 2456666665
No 281
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.38 E-value=2.5e-12 Score=134.51 Aligned_cols=82 Identities=24% Similarity=0.428 Sum_probs=62.2
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccc-----
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF----- 286 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df----- 286 (793)
.++++|.+|+|||||+++|.+.... .....+.|.......+.+++..+++|||||+.+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~----------------v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~ 65 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE----------------VAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK 65 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc----------------ccCCCCccccceEEEEEECCeEEEEEECCCcccccccch
Confidence 5789999999999999999754211 1122355666666777889999999999998542
Q ss_pred --hHHHHHHhhccCcEEEEEeCCCC
Q psy1760 287 --GGEVERILSMVDNVLLLIDAVEG 309 (793)
Q Consensus 287 --~~ev~~~l~~aD~allVVDa~~g 309 (793)
...+...++.+|++++|+|+++.
T Consensus 66 ~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 66 GRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred hHHHHHHHhhccCCEEEEEecCCcc
Confidence 23556678999999999998753
No 282
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.37 E-value=1.4e-12 Score=149.53 Aligned_cols=154 Identities=27% Similarity=0.432 Sum_probs=115.7
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH---
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG--- 288 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~--- 288 (793)
.++++|.||+|||||.|+|.+.. ..+..-+|.|+..+...+.++++.+.++|.||.-++..
T Consensus 5 ~valvGNPNvGKTtlFN~LTG~~----------------q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~ 68 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTGAN----------------QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSE 68 (653)
T ss_pred eEEEecCCCccHHHHHHHHhccC----------------ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCc
Confidence 58999999999999999997541 22344579999999999999999999999999755432
Q ss_pred -H-H-HHH-h-hccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCCh-hhhHhHHHHHHhhhcccccc
Q psy1760 289 -E-V-ERI-L-SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARP-EWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 289 -e-v-~~~-l-~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~-~~v~~~i~~~~~~l~~~~~~ 362 (793)
| + .+. + ..+|.+|-|+||++ ......+.-++.++|.|+|+++|++|.....- .--.+++. +.
T Consensus 69 DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~----------~~ 136 (653)
T COG0370 69 DEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLS----------KL 136 (653)
T ss_pred hHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHH----------HH
Confidence 1 1 122 2 35799999999986 34555566677889999999999999864321 11112222 23
Q ss_pred cCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCc
Q psy1760 363 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 403 (793)
Q Consensus 363 l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 403 (793)
+.+||+++||++|. |+++|++++.+..+...
T Consensus 137 LGvPVv~tvA~~g~----------G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 137 LGVPVVPTVAKRGE----------GLEELKRAIIELAESKT 167 (653)
T ss_pred hCCCEEEEEeecCC----------CHHHHHHHHHHhccccc
Confidence 46899999999998 99999999987665543
No 283
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.37 E-value=3e-12 Score=128.91 Aligned_cols=155 Identities=15% Similarity=0.117 Sum_probs=98.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|..++|||||+.+++....... ...++ +... .....+.-....+.||||+|...|....
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f~~~----~~pT~----------~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~ 70 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCFPEN----YVPTV----------FENY-TASFEIDTQRIELSLWDTSGSPYYDNVR 70 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCc----cCCce----------eeee-EEEEEECCEEEEEEEEECCCchhhHhhh
Confidence 4799999999999999999985421100 00000 1011 1111222224578999999999998877
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhH--HHHHHHHH--cCCccEEEEecccCCCCC----------h-hhhHhHHHHHHhh
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALK--LGFKPIVVVNKIDRSNAR----------P-EWVVDATFDLFDK 355 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~--~~ip~IvvINKiD~~~a~----------~-~~v~~~i~~~~~~ 355 (793)
...++.+|++|+|+|.++...-+.. .++..+.. .+.|+|+|.||+|+.... . .-..++..++...
T Consensus 71 ~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~ 150 (182)
T cd04172 71 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQ 150 (182)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHH
Confidence 7788999999999999875333332 23333333 257889999999985420 0 0111222222222
Q ss_pred hcccccccC-ccEEEeecCCCCcccccccccCC-chhhHHHHHh
Q psy1760 356 LCATEEQLD-FPVIYTSALHGYANENSKARQGN-MIPLFEAILK 397 (793)
Q Consensus 356 l~~~~~~l~-~Pvi~~SA~~g~~~~~~~~~~~g-i~~Ll~~I~~ 397 (793)
.. .+++.+||++|. | ++++|+.++.
T Consensus 151 -------~~~~~~~E~SAk~~~----------n~v~~~F~~~~~ 177 (182)
T cd04172 151 -------IGAATYIECSALQSE----------NSVRDIFHVATL 177 (182)
T ss_pred -------cCCCEEEECCcCCCC----------CCHHHHHHHHHH
Confidence 23 378999999998 7 8888887765
No 284
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.36 E-value=3.2e-12 Score=128.15 Aligned_cols=152 Identities=16% Similarity=0.155 Sum_probs=96.6
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec--CeEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~--~~~i~iiDTPGh~df~~e 289 (793)
+|+++|..++|||||+.++...... .. ...++ +... ...+..+ ...+.||||||+..|...
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~--~~--~~~t~----------~~~~---~~~~~~~~~~~~l~iwDt~G~~~~~~~ 65 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYP--ET--YVPTV----------FENY---TASFEIDEQRIELSLWDTSGSPYYDNV 65 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--CC--cCCce----------EEEE---EEEEEECCEEEEEEEEECCCchhhhhc
Confidence 6899999999999999999854211 00 00000 0010 1122333 367889999999988777
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchh--HHHHHHHHH--cCCccEEEEecccCCCCCh----------hhh-HhHHHHHHh
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQT--RFVTRKALK--LGFKPIVVVNKIDRSNARP----------EWV-VDATFDLFD 354 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt--~~~l~~~~~--~~ip~IvvINKiD~~~a~~----------~~v-~~~i~~~~~ 354 (793)
....++.+|++|+|+|.++...-+. ..++..+.+ .+.|+|+|.||+|+.+... ..+ .++..++-.
T Consensus 66 ~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~ 145 (178)
T cd04131 66 RPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAK 145 (178)
T ss_pred chhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHH
Confidence 7778899999999999987543332 233333433 3678899999999854200 001 112222211
Q ss_pred hhcccccccCc-cEEEeecCCCCcccccccccCC-chhhHHHHHh
Q psy1760 355 KLCATEEQLDF-PVIYTSALHGYANENSKARQGN-MIPLFEAILK 397 (793)
Q Consensus 355 ~l~~~~~~l~~-Pvi~~SA~~g~~~~~~~~~~~g-i~~Ll~~I~~ 397 (793)
.... +++.+||++|. + ++++|+.+..
T Consensus 146 -------~~~~~~~~E~SA~~~~----------~~v~~~F~~~~~ 173 (178)
T cd04131 146 -------QLGAEIYLECSAFTSE----------KSVRDIFHVATM 173 (178)
T ss_pred -------HhCCCEEEECccCcCC----------cCHHHHHHHHHH
Confidence 1233 68999999997 5 8888888765
No 285
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.36 E-value=3e-12 Score=132.90 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=97.2
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+|+++|.+|+|||||+++++....... ..+...+.........+......++||||||+.++.. .
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~-------------~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~--~ 66 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDH-------------AYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTE--D 66 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCcc-------------CcCCCccccceEEEEEECCEEEEEEEEeCCCcchHHH--h
Confidence 589999999999999999974321100 0000001111122223333457899999999973322 2
Q ss_pred HHhh-ccCcEEEEEeCCCCCCch-hHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 292 RILS-MVDNVLLLIDAVEGPMPQ-TRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 292 ~~l~-~aD~allVVDa~~g~~~q-t~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
..+. .+|++++|+|+++....+ ...++..+.. .++|+|+|.||+|+...+.. ..++..++.. ...+
T Consensus 67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v-~~~~~~~~a~-------~~~~ 138 (221)
T cd04148 67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREV-SVQEGRACAV-------VFDC 138 (221)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcccccee-cHHHHHHHHH-------HcCC
Confidence 3456 899999999998743222 2233333333 36899999999998654311 1111122111 1245
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+++++||++|. |++++++.|.+.+..
T Consensus 139 ~~~e~SA~~~~----------gv~~l~~~l~~~~~~ 164 (221)
T cd04148 139 KFIETSAGLQH----------NVDELLEGIVRQIRL 164 (221)
T ss_pred eEEEecCCCCC----------CHHHHHHHHHHHHHh
Confidence 78999999998 999999999887743
No 286
>COG2262 HflX GTPases [General function prediction only]
Probab=99.36 E-value=6.4e-12 Score=136.54 Aligned_cols=152 Identities=20% Similarity=0.174 Sum_probs=105.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec-CeEEEEecCCCcccch-H
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-GTRINIIDTPGHADFG-G 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~-~~~i~iiDTPGh~df~-~ 288 (793)
..|+++|..|+|||||+|+|.... ...+..--.|.+++...+.+. |..+.+-||-|+.+-. .
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~----------------~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~ 256 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGAD----------------VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPH 256 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccC----------------eeccccccccccCceeEEEeCCCceEEEecCccCcccCCh
Confidence 479999999999999999997431 112233345777777888887 6899999999975422 1
Q ss_pred H-------HHHHhhccCcEEEEEeCCCCC-CchhHHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhc
Q psy1760 289 E-------VERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC 357 (793)
Q Consensus 289 e-------v~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~ 357 (793)
. +......||.+++|||+++.- ..+-..+...+.+ ..+|+|+|.||+|+.... .....+...
T Consensus 257 ~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~--~~~~~~~~~----- 329 (411)
T COG2262 257 PLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDE--EILAELERG----- 329 (411)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCch--hhhhhhhhc-----
Confidence 1 122357799999999999862 2233334444444 457999999999986532 111111111
Q ss_pred ccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 358 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 358 ~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
. . +.+++||++|+ |++.|++.|.+.++.
T Consensus 330 --~---~-~~v~iSA~~~~----------gl~~L~~~i~~~l~~ 357 (411)
T COG2262 330 --S---P-NPVFISAKTGE----------GLDLLRERIIELLSG 357 (411)
T ss_pred --C---C-CeEEEEeccCc----------CHHHHHHHHHHHhhh
Confidence 0 1 38999999998 999999999888874
No 287
>KOG0092|consensus
Probab=99.35 E-value=3.8e-12 Score=124.59 Aligned_cols=162 Identities=19% Similarity=0.273 Sum_probs=110.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
..+.++|..++|||||+-++... .+... .+..-|-....+...+.-..+++-||||+|+..|.+..
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~--~F~e~------------~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~sla 71 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKD--QFHEN------------IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLA 71 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhC--ccccc------------cccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccc
Confidence 47899999999999999998754 22111 11112222223333333234788899999999998888
Q ss_pred HHHhhccCcEEEEEeCCCCCCc-hhHHHHHHHHHcCCc-c--EEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALKLGFK-P--IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~~~ip-~--IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
--+++.|++||+|.|.++--.- +.+.+++.+.+..-| + .+|.||+|+.+.+ .-..++..++-.+ ..++
T Consensus 72 pMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R-~V~~~ea~~yAe~-------~gll 143 (200)
T KOG0092|consen 72 PMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERR-EVEFEEAQAYAES-------QGLL 143 (200)
T ss_pred cceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcc-cccHHHHHHHHHh-------cCCE
Confidence 8889999999999999874333 334455555554444 2 3478999998743 2222333333222 3567
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcC
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD 404 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~ 404 (793)
++.+||++|. |++.++..|.+.+|....
T Consensus 144 ~~ETSAKTg~----------Nv~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 144 FFETSAKTGE----------NVNEIFQAIAEKLPCSDP 171 (200)
T ss_pred EEEEeccccc----------CHHHHHHHHHHhccCccc
Confidence 9999999998 999999999999987654
No 288
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.35 E-value=3.6e-12 Score=129.94 Aligned_cols=167 Identities=20% Similarity=0.188 Sum_probs=104.3
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee-cCeEEEEecCCCcccchHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~-~~~~i~iiDTPGh~df~~ev 290 (793)
+|+++|.+|+|||||+|+|++...... +.... +. ..+|... ..+.. ....+.+|||||..+.....
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~--~~~~~---~~------~~~t~~~--~~~~~~~~~~l~l~DtpG~~~~~~~~ 69 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEE--GAAPT---GV------VETTMKR--TPYPHPKFPNVTLWDLPGIGSTAFPP 69 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCC--Ccccc---Cc------cccccCc--eeeecCCCCCceEEeCCCCCcccCCH
Confidence 689999999999999999986421110 00000 00 0011111 11111 13468999999987643333
Q ss_pred HHH-----hhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCC----------hhhhHhHHHHHHhh
Q psy1760 291 ERI-----LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR----------PEWVVDATFDLFDK 355 (793)
Q Consensus 291 ~~~-----l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~----------~~~v~~~i~~~~~~ 355 (793)
+.+ +..+|.+++|.| .........+++.+...+.|+++|+||+|+...+ .++.++++++.+..
T Consensus 70 ~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 147 (197)
T cd04104 70 DDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLE 147 (197)
T ss_pred HHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHH
Confidence 332 456788888754 3455666677888888899999999999984321 23455555555443
Q ss_pred hcccccccCccEEEeecC--CCCcccccccccCCchhhHHHHHhhcCcCc
Q psy1760 356 LCATEEQLDFPVIYTSAL--HGYANENSKARQGNMIPLFEAILKYVPVHK 403 (793)
Q Consensus 356 l~~~~~~l~~Pvi~~SA~--~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 403 (793)
.-.......-||+.+|+. .++ ++..|.+++...+|...
T Consensus 148 ~~~~~~~~~p~v~~vS~~~~~~~----------~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 148 NLQEAGVSEPPVFLVSNFDPSDY----------DFPKLRETLLKDLPAHK 187 (197)
T ss_pred HHHHcCCCCCCEEEEeCCChhhc----------ChHHHHHHHHHHhhHHH
Confidence 332211123478999998 456 89999999999998654
No 289
>KOG1489|consensus
Probab=99.34 E-value=5e-12 Score=132.30 Aligned_cols=151 Identities=20% Similarity=0.301 Sum_probs=105.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeE-EEEecCCCccc----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTR-INIIDTPGHAD---- 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~-i~iiDTPGh~d---- 285 (793)
..++++|.||+|||||+++|......+ ....-+|+.+....+.|+++. +++-|.||...
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkV----------------a~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~ 260 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKV----------------AHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHM 260 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcc----------------cccceeeeccccceeeccccceeEeccCccccccccc
Confidence 367899999999999999997653322 223457888888888898876 99999999643
Q ss_pred ---chHHHHHHhhccCcEEEEEeCCCC----CCchhHHHHHHHHHc-----CCccEEEEecccCCCCChhhhHhHHHHHH
Q psy1760 286 ---FGGEVERILSMVDNVLLLIDAVEG----PMPQTRFVTRKALKL-----GFKPIVVVNKIDRSNARPEWVVDATFDLF 353 (793)
Q Consensus 286 ---f~~ev~~~l~~aD~allVVDa~~g----~~~qt~~~l~~~~~~-----~ip~IvvINKiD~~~a~~~~v~~~i~~~~ 353 (793)
..-+..+.+..|+..++|||.+.+ +..|...++..+..+ ..|.+||+||+|.+++. ...+.++.+.
T Consensus 261 nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-~~~l~~L~~~- 338 (366)
T KOG1489|consen 261 NKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE-KNLLSSLAKR- 338 (366)
T ss_pred cCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH-HHHHHHHHHH-
Confidence 334455666679999999999876 222333344444432 35789999999996432 1222333332
Q ss_pred hhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 354 DKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 354 ~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
+... -|+++||++++ ++..|++.|.+
T Consensus 339 --lq~~------~V~pvsA~~~e----------gl~~ll~~lr~ 364 (366)
T KOG1489|consen 339 --LQNP------HVVPVSAKSGE----------GLEELLNGLRE 364 (366)
T ss_pred --cCCC------cEEEeeecccc----------chHHHHHHHhh
Confidence 2211 28999999998 88999988854
No 290
>KOG0094|consensus
Probab=99.34 E-value=1.1e-11 Score=121.29 Aligned_cols=162 Identities=21% Similarity=0.216 Sum_probs=116.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
-.+.++|..++|||||+.++++........ .-=|+...+....+.-..+++.+|||+|++.|...+
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~Yq--------------ATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrsli 88 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNTYQ--------------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 88 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhccccc--------------ceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhh
Confidence 478999999999999999999874322111 112444444444444344678999999999999999
Q ss_pred HHHhhccCcEEEEEeCCC-CCCchhHHHHHHHHHcCC----ccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVE-GPMPQTRFVTRKALKLGF----KPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~-g~~~qt~~~l~~~~~~~i----p~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
-.+++.++++|+|.|.++ .-..+|..++..++..+- -+++|.||.|+.+.+ +...++-...-++++ .
T Consensus 89 psY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkr-qvs~eEg~~kAkel~-------a 160 (221)
T KOG0094|consen 89 PSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKR-QVSIEEGERKAKELN-------A 160 (221)
T ss_pred hhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchh-hhhHHHHHHHHHHhC-------c
Confidence 999999999999999876 456788888887775432 235678999998753 112222222222233 3
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcC
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD 404 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~ 404 (793)
-++.+||+.|+ |+.+|+..|...+|.+..
T Consensus 161 ~f~etsak~g~----------NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 161 EFIETSAKAGE----------NVKQLFRRIAAALPGMEV 189 (221)
T ss_pred EEEEecccCCC----------CHHHHHHHHHHhccCccc
Confidence 47899999999 999999999888887743
No 291
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.33 E-value=4.6e-12 Score=113.21 Aligned_cols=86 Identities=28% Similarity=0.452 Sum_probs=75.2
Q ss_pred ceEEEEEEeeeC-CCceEEEEEEeecccccCCEEEEecCC-----CCCCCceeEeEEEEeecCceEEecccCCCcEEEEe
Q psy1760 410 LQLQIISLEYSS-YLGKIGIGRILSGRIKSLQDVVIMNGP-----DDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT 483 (793)
Q Consensus 410 ~~~~V~~~~~~~-~~G~v~~grV~sG~lk~G~~v~~~~~~-----~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~ 483 (793)
+.+.|+++.+++ +.|+++++||++|+|+.||.+++...+ .++....+|.+|+.+.|.++.++++|.|||||+|.
T Consensus 1 ~v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 80 (93)
T cd03700 1 LVMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV 80 (93)
T ss_pred CeEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE
Confidence 357899999999 999999999999999999999887631 01233578999999999999999999999999999
Q ss_pred ccceeecCCeEe
Q psy1760 484 GIEEICIGSTIC 495 (793)
Q Consensus 484 gl~~i~iGdtl~ 495 (793)
|++++.+|||.+
T Consensus 81 g~~~~~~g~~~~ 92 (93)
T cd03700 81 GLDQLKSGTTAT 92 (93)
T ss_pred CCccCceEeEec
Confidence 999999999864
No 292
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.33 E-value=8.1e-12 Score=111.89 Aligned_cols=85 Identities=28% Similarity=0.393 Sum_probs=72.6
Q ss_pred ceEEEEEEeeeCCC-ceEEEEEEeecccccCCEEEEecCC-----CCCCCceeEeEEEEeecCceEEecccCCCcEEEEe
Q psy1760 410 LQLQIISLEYSSYL-GKIGIGRILSGRIKSLQDVVIMNGP-----DDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT 483 (793)
Q Consensus 410 ~~~~V~~~~~~~~~-G~v~~grV~sG~lk~G~~v~~~~~~-----~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~ 483 (793)
+.++||++.++++. |+++++||+||+|++||.|++.... +++...++|.+|+.+.|.++.++++|.|||||++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 46789999999998 6799999999999999999986531 02223579999999999999999999999999999
Q ss_pred ccceeecCCeE
Q psy1760 484 GIEEICIGSTI 494 (793)
Q Consensus 484 gl~~i~iGdtl 494 (793)
|+++...+.+.
T Consensus 81 gl~~~~~~~~t 91 (94)
T cd04090 81 GIDSSIVKTAT 91 (94)
T ss_pred CcchheeceEE
Confidence 99987776654
No 293
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.33 E-value=8.5e-12 Score=130.16 Aligned_cols=157 Identities=14% Similarity=0.124 Sum_probs=98.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
..|+++|..++|||+|+.+++........ ..++ |... .....+.-....+.||||||...|....
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~F~~~y----~pTi----------~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~ 78 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDCYPETY----VPTV----------FENY-TAGLETEEQRVELSLWDTSGSPYYDNVR 78 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCCCCCCc----CCce----------eeee-EEEEEECCEEEEEEEEeCCCchhhHHHH
Confidence 47899999999999999999754211100 0000 1111 0111222224678999999999998877
Q ss_pred HHHhhccCcEEEEEeCCCCCCchh--HHHHHHHHH--cCCccEEEEecccCCCCC-----------hhhhHhHHHHHHhh
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQT--RFVTRKALK--LGFKPIVVVNKIDRSNAR-----------PEWVVDATFDLFDK 355 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt--~~~l~~~~~--~~ip~IvvINKiD~~~a~-----------~~~v~~~i~~~~~~ 355 (793)
...++.||++|||+|.++....+. ..++..+.. .+.|+|+|.||+|+.... ..-..++.+++...
T Consensus 79 ~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~ 158 (232)
T cd04174 79 PLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQ 158 (232)
T ss_pred HHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHH
Confidence 778999999999999987543332 233344443 367889999999985320 00111222332222
Q ss_pred hcccccccCc-cEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 356 LCATEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 356 l~~~~~~l~~-Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
..+ +++.+||++|. .|++++|+.+...
T Consensus 159 -------~~~~~~~EtSAktg~---------~~V~e~F~~~~~~ 186 (232)
T cd04174 159 -------LGAEVYLECSAFTSE---------KSIHSIFRSASLL 186 (232)
T ss_pred -------cCCCEEEEccCCcCC---------cCHHHHHHHHHHH
Confidence 234 48899999985 1578888877654
No 294
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.32 E-value=9.5e-12 Score=122.27 Aligned_cols=149 Identities=19% Similarity=0.207 Sum_probs=94.4
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~e 289 (793)
+|+++|+.|+|||||+.+++... +... ..+. .+ .....+.+++ ..+.||||+|..+.
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~--f~~~---------~~~~---~~----~~~~~i~~~~~~~~l~i~D~~g~~~~--- 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGS--YVQL---------ESPE---GG----RFKKEVLVDGQSHLLLIRDEGGAPDA--- 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCC--CCCC---------CCCC---cc----ceEEEEEECCEEEEEEEEECCCCCch---
Confidence 58999999999999999987541 1110 0000 01 0112344455 56889999999652
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
...+.+|++++|+|.++...-+. ..++..+.. .++|+++|.||+|+...+...+..+..+.+.+ ....
T Consensus 61 --~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~-----~~~~ 133 (158)
T cd04103 61 --QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA-----DMKR 133 (158)
T ss_pred --hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH-----HhCC
Confidence 45678999999999987544444 334444443 34688999999998532222222221111211 1113
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
++++.+||++|. |++++|+.+.+.
T Consensus 134 ~~~~e~SAk~~~----------~i~~~f~~~~~~ 157 (158)
T cd04103 134 CSYYETCATYGL----------NVERVFQEAAQK 157 (158)
T ss_pred CcEEEEecCCCC----------CHHHHHHHHHhh
Confidence 679999999998 999999988653
No 295
>KOG0075|consensus
Probab=99.30 E-value=1.5e-11 Score=114.77 Aligned_cols=161 Identities=17% Similarity=0.228 Sum_probs=112.2
Q ss_pred cccccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccc
Q psy1760 207 LTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 286 (793)
Q Consensus 207 f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 286 (793)
|..+-.+.++|..++|||||++..... ... .+. +-|+......+.-++..+.+||.||++.|
T Consensus 17 ~k~emel~lvGLq~sGKtt~Vn~ia~g--~~~------------edm----iptvGfnmrk~tkgnvtiklwD~gGq~rf 78 (186)
T KOG0075|consen 17 WKEEMELSLVGLQNSGKTTLVNVIARG--QYL------------EDM----IPTVGFNMRKVTKGNVTIKLWDLGGQPRF 78 (186)
T ss_pred HHheeeEEEEeeccCCcceEEEEEeec--cch------------hhh----cccccceeEEeccCceEEEEEecCCCccH
Confidence 445567899999999999999988632 111 011 22333444556667789999999999999
Q ss_pred hHHHHHHhhccCcEEEEEeCCCCC-CchhHH----HHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccc
Q psy1760 287 GGEVERILSMVDNVLLLIDAVEGP-MPQTRF----VTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 361 (793)
Q Consensus 287 ~~ev~~~l~~aD~allVVDa~~g~-~~qt~~----~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~ 361 (793)
...++++.+.+|+++++|||.+.- .+..+. ++....-.++|.+|..||+|+++|--. .++...++..+-
T Consensus 79 rsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~------~~li~rmgL~si 152 (186)
T KOG0075|consen 79 RSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSK------IALIERMGLSSI 152 (186)
T ss_pred HHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccH------HHHHHHhCcccc
Confidence 999999999999999999999731 122233 233333468999999999999987311 112222222111
Q ss_pred -ccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 362 -QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 362 -~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
..++-++.+|+++.. |++.++++|++|..+
T Consensus 153 tdREvcC~siScke~~----------Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 153 TDREVCCFSISCKEKV----------NIDITLDWLIEHSKS 183 (186)
T ss_pred ccceEEEEEEEEcCCc----------cHHHHHHHHHHHhhh
Confidence 113557889999987 999999999987643
No 296
>KOG0084|consensus
Probab=99.28 E-value=2.5e-11 Score=119.35 Aligned_cols=155 Identities=20% Similarity=0.229 Sum_probs=105.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
..|.++|..|+|||.|+-++... .+ ..+...-|-++.....+++.| .+++||||+|+..|..
T Consensus 10 FKiiliGds~VGKtCL~~Rf~~~--~f--------------~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrt 73 (205)
T KOG0084|consen 10 FKIILIGDSGVGKTCLLLRFKDD--TF--------------TESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRT 73 (205)
T ss_pred EEEEEECCCCcChhhhhhhhccC--Cc--------------chhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhh
Confidence 47899999999999999998633 11 122223334455555555554 6899999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH-HHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.+..+.+.|+++|+|.|.++.-.-... .++..+.+ .++|.++|.||+|+.+.+.- ..++.+++ . +.++
T Consensus 74 it~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v-~~~~a~~f-a------~~~~ 145 (205)
T KOG0084|consen 74 ITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVV-STEEAQEF-A------DELG 145 (205)
T ss_pred hhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheec-CHHHHHHH-H------HhcC
Confidence 999999999999999999874322222 23344443 35788999999999875421 11222222 1 1234
Q ss_pred cc-EEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 365 FP-VIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 365 ~P-vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.| ++.+||+++. ++++.|..|...+
T Consensus 146 ~~~f~ETSAK~~~----------NVe~~F~~la~~l 171 (205)
T KOG0084|consen 146 IPIFLETSAKDST----------NVEDAFLTLAKEL 171 (205)
T ss_pred CcceeecccCCcc----------CHHHHHHHHHHHH
Confidence 56 8999999987 7776666665433
No 297
>PRK09866 hypothetical protein; Provisional
Probab=99.28 E-value=5.9e-11 Score=135.74 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=82.5
Q ss_pred eEEEEecCCCccc-----chHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcC--CccEEEEecccCCCCChhhh
Q psy1760 273 TRINIIDTPGHAD-----FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG--FKPIVVVNKIDRSNARPEWV 345 (793)
Q Consensus 273 ~~i~iiDTPGh~d-----f~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~--ip~IvvINKiD~~~a~~~~v 345 (793)
..+.|+||||... +...+.+.+..||.+++|+|+..+.....+.+++.+...+ .|+++|+||+|+.+.. ...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dre-edd 308 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRN-SDD 308 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcc-cch
Confidence 5799999999643 3445677899999999999999888888888888888877 4999999999986321 222
Q ss_pred HhHHHHHHhhhcccccccCc-cEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 346 VDATFDLFDKLCATEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 346 ~~~i~~~~~~l~~~~~~l~~-Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
.+.+.+.+...-.. ....+ .|+++||++|. |++.|++.|..+
T Consensus 309 kE~Lle~V~~~L~q-~~i~f~eIfPVSAlkG~----------nid~LLdeI~~~ 351 (741)
T PRK09866 309 ADQVRALISGTLMK-GCITPQQIFPVSSMWGY----------LANRARHELANN 351 (741)
T ss_pred HHHHHHHHHHHHHh-cCCCCceEEEEeCCCCC----------CHHHHHHHHHhC
Confidence 33444433221000 01112 48999999998 999999999764
No 298
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.27 E-value=1.6e-11 Score=123.92 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=95.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+++++|..|+|||||+++|.... +... . .. +........+.+++ ..+++|||||+..|..
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~--~~~~--~------------~~-t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~ 64 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGE--FPEE--Y------------HP-TVFENYVTDCRVDGKPVQLALWDTAGQEEYER 64 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcc--c------------CC-cccceEEEEEEECCEEEEEEEEECCCChhccc
Confidence 378999999999999999997431 1100 0 00 00000111223333 4678999999987765
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH--HHHHHHHH--cCCccEEEEecccCCCCChh-------hh--HhHHHHHHhh
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALK--LGFKPIVVVNKIDRSNARPE-------WV--VDATFDLFDK 355 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~--~~ip~IvvINKiD~~~a~~~-------~v--~~~i~~~~~~ 355 (793)
.....++.+|++++++|.......+.. .++..+.. ..+|+|+|.||+|+...... .. .++...+...
T Consensus 65 ~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (187)
T cd04129 65 LRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE 144 (187)
T ss_pred cchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH
Confidence 544567899999999998754322221 23333332 25789999999998542110 00 1111111111
Q ss_pred hcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 356 LCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 356 l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
++ ..+++.+||++|. |++++++.+.+.+.
T Consensus 145 ~~------~~~~~e~Sa~~~~----------~v~~~f~~l~~~~~ 173 (187)
T cd04129 145 IG------AKKYMECSALTGE----------GVDDVFEAATRAAL 173 (187)
T ss_pred hC------CcEEEEccCCCCC----------CHHHHHHHHHHHHh
Confidence 11 1368999999998 99999999976553
No 299
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.27 E-value=1.5e-11 Score=126.02 Aligned_cols=113 Identities=18% Similarity=0.287 Sum_probs=77.9
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEe----ecCeEEEEecCCCcccch
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE----YNGTRINIIDTPGHADFG 287 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~----~~~~~i~iiDTPGh~df~ 287 (793)
+|.++|++++|||||+++|........ .. ++......+. ..+..+.+||||||..|.
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t----~~---------------s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~ 62 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRST----VT---------------SIEPNVATFILNSEGKGKKFRLVDVPGHPKLR 62 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc----cC---------------cEeecceEEEeecCCCCceEEEEECCCCHHHH
Confidence 689999999999999999976421110 00 0001111111 346789999999999999
Q ss_pred HHHHHHhhcc-CcEEEEEeCCCCC--CchhHHHHHHH----H--HcCCccEEEEecccCCCCChh
Q psy1760 288 GEVERILSMV-DNVLLLIDAVEGP--MPQTRFVTRKA----L--KLGFKPIVVVNKIDRSNARPE 343 (793)
Q Consensus 288 ~ev~~~l~~a-D~allVVDa~~g~--~~qt~~~l~~~----~--~~~ip~IvvINKiD~~~a~~~ 343 (793)
......++.+ +++|+|+|+.... ...+...+..+ . ..++|+++|+||+|+..+...
T Consensus 63 ~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~ 127 (203)
T cd04105 63 DKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPA 127 (203)
T ss_pred HHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCH
Confidence 9888889998 9999999998752 12222333222 1 147899999999999876543
No 300
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.25 E-value=2.1e-11 Score=124.08 Aligned_cols=164 Identities=18% Similarity=0.175 Sum_probs=104.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH--
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG-- 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~-- 288 (793)
.+|+++|.+|+|||||+|+|++...... ....+|.|.........+++..+++|||||..++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~--------------~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~ 66 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFES--------------KLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSP 66 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccc--------------ccCCCCcccccceeeEEECCeEEEEEECcCCCCccCCh
Confidence 3799999999999999999997632211 011346677777777888999999999999877632
Q ss_pred -----HHHHH----hhccCcEEEEEeCCCCCCchhHHHHHHHHHc-C----CccEEEEecccCCCC-ChhhhHh----HH
Q psy1760 289 -----EVERI----LSMVDNVLLLIDAVEGPMPQTRFVTRKALKL-G----FKPIVVVNKIDRSNA-RPEWVVD----AT 349 (793)
Q Consensus 289 -----ev~~~----l~~aD~allVVDa~~g~~~qt~~~l~~~~~~-~----ip~IvvINKiD~~~a-~~~~v~~----~i 349 (793)
++.+. ...+|++|+|+|+.. ........++.+.+. | .++|+++|+.|.... ..++.+. .+
T Consensus 67 ~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l 145 (196)
T cd01852 67 EQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEAL 145 (196)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHH
Confidence 22222 234799999999987 667777777776653 3 467899999997653 2222222 22
Q ss_pred HHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 350 FDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 350 ~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+.++...+.. ++..+.+.-. .....++..|++.|.+.++.
T Consensus 146 ~~l~~~c~~r-------~~~f~~~~~~-----~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 146 KRLLEKCGGR-------YVAFNNKAKG-----EEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred HHHHHHhCCe-------EEEEeCCCCc-----chhHHHHHHHHHHHHHHHHh
Confidence 2332222211 2233332200 00122788999999877764
No 301
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.24 E-value=5.3e-11 Score=122.79 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=99.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+++++|++|+|||||+++++... +... ....-|..+.........+...+++|||||+.+|....
T Consensus 10 ~kv~liG~~g~GKTtLi~~~~~~~--~~~~------------~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~ 75 (215)
T PTZ00132 10 FKLILVGDGGVGKTTFVKRHLTGE--FEKK------------YIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR 75 (215)
T ss_pred ceEEEECCCCCCHHHHHHHHHhCC--CCCC------------CCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh
Confidence 479999999999999998776431 1100 00111222222222223345789999999999998777
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHH-HHHH--HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVT-RKAL--KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l-~~~~--~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
...+..+|++++|+|.++....+....| ..+. ..++|++++.||+|+..... ..+..++.. ...+++
T Consensus 76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~---~~~~~~~~~-------~~~~~~ 145 (215)
T PTZ00132 76 DGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQV---KARQITFHR-------KKNLQY 145 (215)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccC---CHHHHHHHH-------HcCCEE
Confidence 7778899999999999875443333222 2222 13678889999999864321 111112211 123568
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
+.+||++|. |++..+..|...+
T Consensus 146 ~e~Sa~~~~----------~v~~~f~~ia~~l 167 (215)
T PTZ00132 146 YDISAKSNY----------NFEKPFLWLARRL 167 (215)
T ss_pred EEEeCCCCC----------CHHHHHHHHHHHH
Confidence 999999998 7887777776655
No 302
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.24 E-value=1.8e-11 Score=126.50 Aligned_cols=165 Identities=23% Similarity=0.313 Sum_probs=108.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEE-eeeeeEEeecCeEEEEecCCCccc----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITI-FSKNCSIEYNGTRINIIDTPGHAD---- 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi-~~~~~~~~~~~~~i~iiDTPGh~d---- 285 (793)
-|+-|+|.+|+|||||+|+|+......- .. -|++. ........+++..++||||||..|
T Consensus 40 vnvLi~G~TG~GKSSliNALF~~~~~~v---------------~~-vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~ 103 (296)
T COG3596 40 VNVLLMGATGAGKSSLINALFQGEVKEV---------------SK-VGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDK 103 (296)
T ss_pred eeEEEecCCCCcHHHHHHHHHhccCcee---------------ee-cccCCCchhhHHhhccccceEEecCCCcccchhh
Confidence 3788999999999999999984311110 00 01111 111122345678899999999877
Q ss_pred ---chHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHc--CCccEEEEecccCCCC----C-----h-hhhHhHHH
Q psy1760 286 ---FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL--GFKPIVVVNKIDRSNA----R-----P-EWVVDATF 350 (793)
Q Consensus 286 ---f~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~--~ip~IvvINKiD~~~a----~-----~-~~v~~~i~ 350 (793)
+...+...+...|.+++++|+.+.........++..... +.+.+++||..|+... + + ....+-++
T Consensus 104 D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~ 183 (296)
T COG3596 104 DAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIE 183 (296)
T ss_pred hHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHH
Confidence 555567778999999999999987666666667665543 4688999999998532 1 1 11111111
Q ss_pred HHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 351 DLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 351 ~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
.....++.. -+.--||++.|+..+| |++.|+.+++..+|..
T Consensus 184 ~k~~~~~~~-~q~V~pV~~~~~r~~w----------gl~~l~~ali~~lp~e 224 (296)
T COG3596 184 EKAEALGRL-FQEVKPVVAVSGRLPW----------GLKELVRALITALPVE 224 (296)
T ss_pred HHHHHHHHH-HhhcCCeEEeccccCc----------cHHHHHHHHHHhCccc
Confidence 111111111 0114589999999999 9999999999999854
No 303
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.23 E-value=5e-11 Score=123.70 Aligned_cols=159 Identities=14% Similarity=0.114 Sum_probs=95.8
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec--CeEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~--~~~i~iiDTPGh~df~~e 289 (793)
+|+++|..++|||||+.++..... .. ....++ +... ...+.++ ...++||||+|...|...
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f--~~--~y~pTi----------~~~~---~~~~~~~~~~v~L~iwDt~G~e~~~~l 65 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAY--PG--SYVPTV----------FENY---TASFEIDKRRIELNMWDTSGSSYYDNV 65 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--CC--ccCCcc----------ccce---EEEEEECCEEEEEEEEeCCCcHHHHHH
Confidence 689999999999999999985421 10 000011 0011 1123333 357889999999999887
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchhH-HHHH-HHHH--cCCccEEEEecccCCCCChhhhHhHHHHHH-----hhhc-cc
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQTR-FVTR-KALK--LGFKPIVVVNKIDRSNARPEWVVDATFDLF-----DKLC-AT 359 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt~-~~l~-~~~~--~~ip~IvvINKiD~~~a~~~~v~~~i~~~~-----~~l~-~~ 359 (793)
....++.+|++|+|+|.++...-+.. ..|. .... .+.|+|+|.||+|+.... ...+++.+.. .+.+ .-
T Consensus 66 ~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~--~~~~~~~~~~~~pIs~e~g~~~ 143 (222)
T cd04173 66 RPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDL--ATLRELSKQRLIPVTHEQGTVL 143 (222)
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccch--hhhhhhhhccCCccCHHHHHHH
Confidence 77889999999999999875222221 2232 2222 467899999999986421 1111110000 0000 00
Q ss_pred ccccC-ccEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 360 EEQLD-FPVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 360 ~~~l~-~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
..... .+++.+||+++. .|+.++|+.....
T Consensus 144 ak~~~~~~y~E~SAk~~~---------~~V~~~F~~~~~~ 174 (222)
T cd04173 144 AKQVGAVSYVECSSRSSE---------RSVRDVFHVATVA 174 (222)
T ss_pred HHHcCCCEEEEcCCCcCC---------cCHHHHHHHHHHH
Confidence 11223 479999999886 1488888876653
No 304
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.23 E-value=7.1e-11 Score=115.47 Aligned_cols=156 Identities=25% Similarity=0.351 Sum_probs=101.2
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
.|+++|+.++|||||+++|..... ... .....|.........+.-....+.||||+|+..|.....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~--~~~------------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF--PEN------------YIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRD 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST--TSS------------SETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc--ccc------------ccccccccccccccccccccccccccccccccccccccc
Confidence 478999999999999999986421 110 001112222222233322345789999999999987777
Q ss_pred HHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
..++.+|++|+|+|.++.-.-+. ..++..+.. ...|++++.||.|+...+ .-..++.+++...+ ..|+
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~-~v~~~~~~~~~~~~-------~~~~ 138 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDER-EVSVEEAQEFAKEL-------GVPY 138 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGS-SSCHHHHHHHHHHT-------TSEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeeeccccccccc-cchhhHHHHHHHHh-------CCEE
Confidence 78999999999999876322111 223333332 246888999999987622 11122333333222 3679
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
+.+||+++. |+.++|..+++.+
T Consensus 139 ~e~Sa~~~~----------~v~~~f~~~i~~i 160 (162)
T PF00071_consen 139 FEVSAKNGE----------NVKEIFQELIRKI 160 (162)
T ss_dssp EEEBTTTTT----------THHHHHHHHHHHH
T ss_pred EEEECCCCC----------CHHHHHHHHHHHH
Confidence 999999998 8988988887654
No 305
>KOG0078|consensus
Probab=99.19 E-value=1.8e-10 Score=114.97 Aligned_cols=156 Identities=21% Similarity=0.169 Sum_probs=106.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
..|.++|.+++|||.++.++...+......+ -+-|+.+...+..++ .++.+|||.|+..|..
T Consensus 13 ~kvlliGDs~vGKt~~l~rf~d~~f~~~~~s----------------TiGIDFk~kti~l~g~~i~lQiWDtaGQerf~t 76 (207)
T KOG0078|consen 13 FKLLLIGDSGVGKTCLLLRFSDDSFNTSFIS----------------TIGIDFKIKTIELDGKKIKLQIWDTAGQERFRT 76 (207)
T ss_pred EEEEEECCCCCchhHhhhhhhhccCcCCccc----------------eEEEEEEEEEEEeCCeEEEEEEEEcccchhHHH
Confidence 4789999999999999999976543322111 122344444444444 5788999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCC-chhHHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
...++++.|++++||+|.+.... ...+.+++...+ .++|.++|.||+|+...+. -..++-+.+-.+ .+
T Consensus 77 i~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~-V~~e~ge~lA~e-------~G 148 (207)
T KOG0078|consen 77 ITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQ-VSKERGEALARE-------YG 148 (207)
T ss_pred HHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccccc-ccHHHHHHHHHH-------hC
Confidence 99999999999999999886433 222334444443 3678899999999976431 111222222222 25
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
++++.+||++|. |+++.+-.|...+-
T Consensus 149 ~~F~EtSAk~~~----------NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 149 IKFFETSAKTNF----------NIEEAFLSLARDIL 174 (207)
T ss_pred CeEEEccccCCC----------CHHHHHHHHHHHHH
Confidence 679999999998 77766666655544
No 306
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.18 E-value=1.2e-10 Score=118.45 Aligned_cols=107 Identities=17% Similarity=0.143 Sum_probs=70.3
Q ss_pred CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhH-H-HHHHHHH--cCCccEEEEecccCCCCCh-----
Q psy1760 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTR-F-VTRKALK--LGFKPIVVVNKIDRSNARP----- 342 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~-~-~l~~~~~--~~ip~IvvINKiD~~~a~~----- 342 (793)
.+.++||||+|..+. .....++.+|++|+|+|.++...-+.. . ++..+.. .+.|+|+|.||+|+...+.
T Consensus 65 ~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~ 142 (195)
T cd01873 65 SVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNR 142 (195)
T ss_pred EEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhh
Confidence 468899999998653 223357899999999999875333322 2 3333333 3678899999999864210
Q ss_pred ------------hh-hHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 343 ------------EW-VVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 343 ------------~~-v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
.. ..++.+++-. ...++++.+||++|. |++++|+.+++
T Consensus 143 ~~~~~~~~~~~~~~V~~~e~~~~a~-------~~~~~~~E~SAkt~~----------~V~e~F~~~~~ 193 (195)
T cd01873 143 ARRPLARPIKNADILPPETGRAVAK-------ELGIPYYETSVVTQF----------GVKDVFDNAIR 193 (195)
T ss_pred cccccccccccCCccCHHHHHHHHH-------HhCCEEEEcCCCCCC----------CHHHHHHHHHH
Confidence 01 1122222211 234579999999998 99999998865
No 307
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.17 E-value=1.6e-10 Score=125.95 Aligned_cols=173 Identities=21% Similarity=0.192 Sum_probs=102.9
Q ss_pred cceeeeecccCCcceehhhhhhccCcccccccc---c--c------ccccchhh---ccccceEEeeeeeE---------
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNI---N--A------RIMDSNEI---EKERGITIFSKNCS--------- 267 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v---~--~------~~~D~~~~---e~erGiTi~~~~~~--------- 267 (793)
..|+|.|.+|+|||||+++|..........-.+ + + ...|.... ....+.-+.+....
T Consensus 57 ~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a~~ 136 (332)
T PRK09435 57 LRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVARK 136 (332)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccchHHH
Confidence 478999999999999999986543211110000 0 0 01121111 12223223222211
Q ss_pred -------EeecCeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCC
Q psy1760 268 -------IEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA 340 (793)
Q Consensus 268 -------~~~~~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a 340 (793)
+...++.+.||||+|...-... +...||.+++|++...|..-|... ...+.+..|+|+||+|+...
T Consensus 137 ~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k----~gi~E~aDIiVVNKaDl~~~ 209 (332)
T PRK09435 137 TRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK----KGIMELADLIVINKADGDNK 209 (332)
T ss_pred HHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH----hhhhhhhheEEeehhcccch
Confidence 1234789999999998844333 577899999998755443333321 11122234899999998754
Q ss_pred C-hhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 341 R-PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 341 ~-~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
. ......++...+..+......+..||+++||++|. |+++|++.|.++++
T Consensus 210 ~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~----------GIdeL~~~I~~~~~ 260 (332)
T PRK09435 210 TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGE----------GIDEIWQAIEDHRA 260 (332)
T ss_pred hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 2 33455555555543222111234589999999998 99999999988876
No 308
>KOG0394|consensus
Probab=99.16 E-value=8.2e-11 Score=114.21 Aligned_cols=156 Identities=20% Similarity=0.215 Sum_probs=102.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEE----eeeeeEEeecCeEEEEecCCCcccc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITI----FSKNCSIEYNGTRINIIDTPGHADF 286 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi----~~~~~~~~~~~~~i~iiDTPGh~df 286 (793)
..|.|+|.+|+|||+|++++....-. .....|| ..+...++-.-..+.||||+|++.|
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~------------------~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERF 71 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFS------------------QQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERF 71 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHH------------------HHhccccchhheeeEEEEcCeEEEEEEEecccHHHh
Confidence 37899999999999999999865211 1111122 2222333322346789999999999
Q ss_pred hHHHHHHhhccCcEEEEEeCCCCCCchhHHHHH-----HHHH---cCCccEEEEecccCCCCC-hhhhHhHHHHHHhhhc
Q psy1760 287 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTR-----KALK---LGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKLC 357 (793)
Q Consensus 287 ~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~-----~~~~---~~ip~IvvINKiD~~~a~-~~~v~~~i~~~~~~l~ 357 (793)
...-....+.||+++||.|....-.-.....|+ .+.. ...|+||+.||+|..+.. ........++-.++
T Consensus 72 qsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s-- 149 (210)
T KOG0394|consen 72 QSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKS-- 149 (210)
T ss_pred hhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHh--
Confidence 887777789999999999987654444444443 3332 235889999999997642 11122222222222
Q ss_pred ccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 358 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 358 ~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
.-++|.+.+||+.+. |++..|+.+....-
T Consensus 150 ----~gnipyfEtSAK~~~----------NV~~AFe~ia~~aL 178 (210)
T KOG0394|consen 150 ----KGNIPYFETSAKEAT----------NVDEAFEEIARRAL 178 (210)
T ss_pred ----cCCceeEEecccccc----------cHHHHHHHHHHHHH
Confidence 237899999999998 77777777765443
No 309
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.16 E-value=1.1e-10 Score=122.83 Aligned_cols=83 Identities=23% Similarity=0.408 Sum_probs=65.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCccc-----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD----- 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d----- 285 (793)
..++++|.|++|||||+++|.+..... ....-+|..+...-++|+|..|+|+|+||...
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~sev----------------a~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g 127 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEV----------------ADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSG 127 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccc----------------cccCceecccccceEeecCceEEEEcCcccccCcccC
Confidence 478999999999999999997653222 11234577777788999999999999999743
Q ss_pred --chHHHHHHhhccCcEEEEEeCCCC
Q psy1760 286 --FGGEVERILSMVDNVLLLIDAVEG 309 (793)
Q Consensus 286 --f~~ev~~~l~~aD~allVVDa~~g 309 (793)
-+.++...++.||.+++|+|+.+.
T Consensus 128 ~grG~~vlsv~R~ADlIiiVld~~~~ 153 (365)
T COG1163 128 RGRGRQVLSVARNADLIIIVLDVFED 153 (365)
T ss_pred CCCcceeeeeeccCCEEEEEEecCCC
Confidence 235677889999999999999864
No 310
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.15 E-value=7.5e-10 Score=118.74 Aligned_cols=122 Identities=27% Similarity=0.342 Sum_probs=82.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|+.|+|||||+|+|+........ ... +.......+.+++......+..+| .++++|||||+.|+..
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~-~~~-----~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~ 78 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSD-YPP-----DPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNIN 78 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCcccc-CCC-----CccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccccc
Confidence 58999999999999999999865322111 000 001111223334555555666666 4699999999877643
Q ss_pred HH---------------------HHHhh-------ccCcEEEEEeCC-CCCCchhHHHHHHHHHcCCccEEEEecccCCC
Q psy1760 289 EV---------------------ERILS-------MVDNVLLLIDAV-EGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN 339 (793)
Q Consensus 289 ev---------------------~~~l~-------~aD~allVVDa~-~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~ 339 (793)
.- .+..+ .+|++++++++. .++.+.....++.+.. ++|+|+|+||+|+..
T Consensus 79 ~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~ 157 (276)
T cd01850 79 NSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLT 157 (276)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCC
Confidence 20 11112 478999999987 4777777888888775 789999999999964
No 311
>KOG0052|consensus
Probab=99.15 E-value=1.6e-10 Score=125.03 Aligned_cols=227 Identities=28% Similarity=0.320 Sum_probs=152.6
Q ss_pred ccceeeeecccCCcceehhhhhhccCcccccc---------------ccccccccchhhccccceEEeeeeeEEeecCeE
Q psy1760 210 DKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERGITIFSKNCSIEYNGTR 274 (793)
Q Consensus 210 e~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~---------------~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~ 274 (793)
..|+.++||.++||||+.. +.++.+..+. ...++++|....|++||++|+.....+....+.
T Consensus 7 ~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k~~ 83 (391)
T KOG0052|consen 7 HINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYY 83 (391)
T ss_pred ccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccceeEE
Confidence 3699999999999999887 3333332211 112588999999999999988887777777889
Q ss_pred EEEecCCCcccchHHHHHHhhccCcEEEEEeCCCC-------CCchhHHHHHHHHHcCCcc-EEEEecccCCCCChh-hh
Q psy1760 275 INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-------PMPQTRFVTRKALKLGFKP-IVVVNKIDRSNARPE-WV 345 (793)
Q Consensus 275 i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g-------~~~qt~~~l~~~~~~~ip~-IvvINKiD~~~a~~~-~v 345 (793)
++++|.|||.||..++....++||+++++|.+..| ...||+++..++..++... ++.+||+|.....+. ..
T Consensus 84 i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~~s~~r 163 (391)
T KOG0052|consen 84 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEAR 163 (391)
T ss_pred EEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCCCccccc
Confidence 99999999999999999999999999999998433 3579999999999998755 888999997542211 01
Q ss_pred HhHHHHHHhhhcccccccCccEEEeec-CCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCc
Q psy1760 346 VDATFDLFDKLCATEEQLDFPVIYTSA-LHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLG 424 (793)
Q Consensus 346 ~~~i~~~~~~l~~~~~~l~~Pvi~~SA-~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G 424 (793)
.+++. +.....- +.|+ +.... .. +++...+.|
T Consensus 164 ~~ei~---------------k~~~~~~~~~g~----------n~~~~-------------------~~---~~~~~~g~~ 196 (391)
T KOG0052|consen 164 YEEIK---------------KEVSSYIKKIGY----------NPAAV-------------------LQ---DVYKIGGIG 196 (391)
T ss_pred hhhhh---------------eeeeeeeecccc----------CChhh-------------------hc---cceeeccee
Confidence 11100 0000000 0111 11111 11 122222222
Q ss_pred eEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe----ccceeecCCeEeCCCCC
Q psy1760 425 KIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT----GIEEICIGSTICDPSKP 500 (793)
Q Consensus 425 ~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~----gl~~i~iGdtl~~~~~~ 500 (793)
+..|.++.++.+...+. . ...++....+++ ..-.++.+||.|+.. ...++..|+.+.+..+.
T Consensus 197 ------~~t~iie~~~~v~~~~~--~--~~~~vk~~~~~~----~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK~~ 262 (391)
T KOG0052|consen 197 ------VETGISEPGMDVTFAPS--G--VTTEVKSVKVHH----EAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSKND 262 (391)
T ss_pred ------eeeeeccCccceecccc--c--cccccccEEEEe----ccCccCCCcceeeeecccCccCcccccceecccccC
Confidence 78888999988877665 2 244555555444 233378899999984 34577788888777665
No 312
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.14 E-value=2.6e-10 Score=116.61 Aligned_cols=168 Identities=13% Similarity=0.132 Sum_probs=98.7
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEe-----ecCeEEEEecCCCcccc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE-----YNGTRINIIDTPGHADF 286 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~-----~~~~~i~iiDTPGh~df 286 (793)
+|.++|..++|||||+++++....... ....-|.+.......+. -..+.++||||+|+..|
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~--------------~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~ 67 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGR--------------PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV 67 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH
Confidence 578999999999999999986421110 00011222222222221 12367899999999999
Q ss_pred hHHHHHHhhccCcEEEEEeCCCCCCchhH-HHHHHHHH----------------------cCCccEEEEecccCCCCChh
Q psy1760 287 GGEVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK----------------------LGFKPIVVVNKIDRSNARPE 343 (793)
Q Consensus 287 ~~ev~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~----------------------~~ip~IvvINKiD~~~a~~~ 343 (793)
.......++.+|++|+|+|.++...-+.. .++..+.. .++|+|+|.||+|+...+..
T Consensus 68 ~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~ 147 (202)
T cd04102 68 KSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES 147 (202)
T ss_pred HHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc
Confidence 88778889999999999999875332222 23333322 25799999999998653211
Q ss_pred hhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 344 WVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 344 ~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
.-.. .+...+.-.++.+.|-+..++.+......-......+..+|+.+++
T Consensus 148 ~~~~----~~~~~~~ia~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (202)
T cd04102 148 SGNL----VLTARGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIE 197 (202)
T ss_pred chHH----HhhHhhhHHHhcCCceEEEecCCcccccCCCccHHHHHHHHHHHHH
Confidence 1100 1111122234556778888888764332211112234556665543
No 313
>KOG0080|consensus
Probab=99.14 E-value=1.3e-10 Score=110.07 Aligned_cols=160 Identities=18% Similarity=0.168 Sum_probs=103.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
..|.++|..|+|||+|+-++...+.. |..+. .-|+....+...+.-+..++.||||+|+..|....
T Consensus 12 ~KiLlIGeSGVGKSSLllrFv~~~fd------------~~~~~--tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLT 77 (209)
T KOG0080|consen 12 FKILLIGESGVGKSSLLLRFVSNTFD------------DLHPT--TIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLT 77 (209)
T ss_pred EEEEEEccCCccHHHHHHHHHhcccC------------ccCCc--eeeeeEEEEEEEEcCceEEEEEEeccchHhhhccC
Confidence 57899999999999999888644211 10000 02444445555555566789999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHH-HHHHHc----CCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVT-RKALKL----GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l-~~~~~~----~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
.++.+.|.++|+|.|.+....-.-..+| +.+..+ ++-.++|.||+|+.+.+.-.. ++=.++-.++ ..
T Consensus 78 pSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~r-eEG~kfAr~h-------~~ 149 (209)
T KOG0080|consen 78 PSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDR-EEGLKFARKH-------RC 149 (209)
T ss_pred HhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccH-HHHHHHHHhh-------Cc
Confidence 9999999999999999864332222333 333322 334478999999875432111 1112222222 23
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhc-CcC
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV-PVH 402 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l-p~p 402 (793)
-++.+||++.. +++..|+.+++.+ ..|
T Consensus 150 LFiE~SAkt~~----------~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 150 LFIECSAKTRE----------NVQCCFEELVEKIIETP 177 (209)
T ss_pred EEEEcchhhhc----------cHHHHHHHHHHHHhcCc
Confidence 37899999987 7777777666544 344
No 314
>KOG0095|consensus
Probab=99.12 E-value=4.3e-10 Score=105.11 Aligned_cols=157 Identities=21% Similarity=0.238 Sum_probs=107.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
..|+++|..|+|||.|+.++.. |.++..+.. .-|+....+...+.-...++.||||+|+..|..-.
T Consensus 8 fkivlvgnagvgktclvrrftq--glfppgqga------------tigvdfmiktvev~gekiklqiwdtagqerfrsit 73 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQ--GLFPPGQGA------------TIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSIT 73 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhc--cCCCCCCCc------------eeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHH
Confidence 4789999999999999999863 333322110 01233333444454455788999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhH-HHHHHHHHc---CCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~~---~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
.++.+.|++.|||.|.+..+.-... ++++.+.++ ++-.|+|.||+|+.+. .++-+++-+.|.+... .-
T Consensus 74 qsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr--revp~qigeefs~~qd------my 145 (213)
T KOG0095|consen 74 QSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR--REVPQQIGEEFSEAQD------MY 145 (213)
T ss_pred HHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh--hhhhHHHHHHHHHhhh------hh
Confidence 9999999999999999876543333 344544443 3334889999999764 3555666555544321 22
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
++..||+... |++.|+..+.-.+
T Consensus 146 fletsakea~----------nve~lf~~~a~rl 168 (213)
T KOG0095|consen 146 FLETSAKEAD----------NVEKLFLDLACRL 168 (213)
T ss_pred hhhhcccchh----------hHHHHHHHHHHHH
Confidence 6789999877 7888887765444
No 315
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.09 E-value=5.9e-10 Score=115.51 Aligned_cols=168 Identities=30% Similarity=0.326 Sum_probs=103.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccc---------ccc--ccccccc---hhhccccceEEeeeeeEEee------
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKN---------QNI--NARIMDS---NEIEKERGITIFSKNCSIEY------ 270 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~---------~~v--~~~~~D~---~~~e~erGiTi~~~~~~~~~------ 270 (793)
..|+|.|+||+|||||+++|....-..... ... .+-.-|. .......|+-|.+....-..
T Consensus 30 ~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls~~ 109 (266)
T PF03308_consen 30 HVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLSRA 109 (266)
T ss_dssp EEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHHHH
T ss_pred eEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCccHh
Confidence 578999999999999999997542111000 000 0111111 12334456655554443222
Q ss_pred ----------cCeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHH--HHHHHHHcCCccEEEEecccCC
Q psy1760 271 ----------NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRF--VTRKALKLGFKPIVVVNKIDRS 338 (793)
Q Consensus 271 ----------~~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~--~l~~~~~~~ip~IvvINKiD~~ 338 (793)
.|+.+.||.|-|.-...- ....+||.+++|+-+..|-.-|..+ +++ +.-|+||||.|++
T Consensus 110 t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE------iaDi~vVNKaD~~ 180 (266)
T PF03308_consen 110 TRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIME------IADIFVVNKADRP 180 (266)
T ss_dssp HHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHH------H-SEEEEE--SHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhh------hccEEEEeCCChH
Confidence 378999999999755322 3478899999999998887777543 333 3459999999987
Q ss_pred CCChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 339 NARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 339 ~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.+ +....+++..+.-.......+..||+.+||.+|. |+++|+++|.+|.
T Consensus 181 gA--~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~----------Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 181 GA--DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGE----------GIDELWEAIDEHR 229 (266)
T ss_dssp HH--HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTB----------SHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCC----------CHHHHHHHHHHHH
Confidence 65 4566666666644333344455799999999998 9999999987654
No 316
>KOG0093|consensus
Probab=99.09 E-value=6.2e-10 Score=104.00 Aligned_cols=164 Identities=20% Similarity=0.147 Sum_probs=111.0
Q ss_pred cccccccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcc
Q psy1760 205 DKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA 284 (793)
Q Consensus 205 g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~ 284 (793)
.+|+.-..+.|+|...+|||+|+-+.+..+-.... -+.-|+....+...-.-+..++.+|||+|.+
T Consensus 16 qnFDymfKlliiGnssvGKTSfl~ry~ddSFt~af--------------vsTvGidFKvKTvyr~~kRiklQiwDTagqE 81 (193)
T KOG0093|consen 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAF--------------VSTVGIDFKVKTVYRSDKRIKLQIWDTAGQE 81 (193)
T ss_pred ccccceeeEEEEccCCccchhhhHHhhccccccce--------------eeeeeeeEEEeEeeecccEEEEEEEecccch
Confidence 45666678999999999999999888765433211 1122444444433222245789999999999
Q ss_pred cchHHHHHHhhccCcEEEEEeCCCCCCchhH-HHHHHHH---HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccc
Q psy1760 285 DFGGEVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKAL---KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 360 (793)
Q Consensus 285 df~~ev~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~---~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~ 360 (793)
.+....-..++.|++.||+.|.++...-... .+.-+++ ..+.|+|+|.||+|+.+.+.- ..+..+.+..++
T Consensus 82 ryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvi-s~e~g~~l~~~L---- 156 (193)
T KOG0093|consen 82 RYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVI-SHERGRQLADQL---- 156 (193)
T ss_pred hhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceee-eHHHHHHHHHHh----
Confidence 9888888889999999999999864222111 1222222 357899999999999876521 123333443333
Q ss_pred cccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 361 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 361 ~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
.|.++.+||+.+. |+..+++.++..+.
T Consensus 157 ---GfefFEtSaK~Ni----------nVk~~Fe~lv~~Ic 183 (193)
T KOG0093|consen 157 ---GFEFFETSAKENI----------NVKQVFERLVDIIC 183 (193)
T ss_pred ---ChHHhhhcccccc----------cHHHHHHHHHHHHH
Confidence 4568999999987 78888887776553
No 317
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.08 E-value=5.4e-10 Score=99.44 Aligned_cols=85 Identities=22% Similarity=0.359 Sum_probs=75.0
Q ss_pred CCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--c
Q psy1760 407 NNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--G 484 (793)
Q Consensus 407 ~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--g 484 (793)
+.||+|+|.+++..+..|+++.|||.+|+|+.||++.++|. + ...+|++|+.+. .++++|.|||.|+|. +
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~--~--~~~~V~sI~~~~----~~~~~a~aG~~v~i~l~~ 73 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPA--G--VTGEVKSVEMHH----EPLEEALPGDNVGFNVKN 73 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCC--C--cEEEEEEEEECC----cCcCEECCCCEEEEEECC
Confidence 57999999999999999999999999999999999999987 3 578999998764 789999999999984 6
Q ss_pred c--ceeecCCeEeCCCC
Q psy1760 485 I--EEICIGSTICDPSK 499 (793)
Q Consensus 485 l--~~i~iGdtl~~~~~ 499 (793)
+ +++..||.||++++
T Consensus 74 i~~~~v~~G~vl~~~~~ 90 (91)
T cd03693 74 VSKKDIKRGDVAGDSKN 90 (91)
T ss_pred CCHHHcCCcCEEccCCC
Confidence 4 46899999998754
No 318
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.08 E-value=8.1e-10 Score=120.38 Aligned_cols=80 Identities=18% Similarity=0.145 Sum_probs=52.0
Q ss_pred eeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEe-----------------------
Q psy1760 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE----------------------- 269 (793)
Q Consensus 213 IaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~----------------------- 269 (793)
|+|+|.+|+|||||+++|....... ...+++|+.+......
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~----------------~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~ 64 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEI----------------ANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCID 64 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcc----------------cCCCCccccceeEEEEEecCCCchhhhhhhccccccccc
Confidence 5799999999999999998652111 1111222222221111
Q ss_pred -ecCeEEEEecCCCcc----cchH---HHHHHhhccCcEEEEEeCCC
Q psy1760 270 -YNGTRINIIDTPGHA----DFGG---EVERILSMVDNVLLLIDAVE 308 (793)
Q Consensus 270 -~~~~~i~iiDTPGh~----df~~---ev~~~l~~aD~allVVDa~~ 308 (793)
+...++.+|||||.. .+.+ .....++.||++++|+|++.
T Consensus 65 ~~~~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 65 GKRYVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CcCcceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 234679999999973 3333 34456899999999999974
No 319
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.06 E-value=9.9e-11 Score=108.62 Aligned_cols=113 Identities=23% Similarity=0.244 Sum_probs=72.8
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+|.++|+.|+|||||+++|+..... +........+.++.............+.++|++|...+.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP------------DNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQ 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------------------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc------------ccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccccc
Confidence 4789999999999999999876432 0011111223344333344444445689999999988877666
Q ss_pred HHhhccCcEEEEEeCCCCCC-chhHHH---HHHHHH--cCCccEEEEeccc
Q psy1760 292 RILSMVDNVLLLIDAVEGPM-PQTRFV---TRKALK--LGFKPIVVVNKID 336 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~-~qt~~~---l~~~~~--~~ip~IvvINKiD 336 (793)
..+..+|++++|+|+++... .+...+ +..... ..+|+|+|.||.|
T Consensus 69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 67999999999999987421 121222 222222 3589999999998
No 320
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.05 E-value=3e-09 Score=112.20 Aligned_cols=115 Identities=22% Similarity=0.226 Sum_probs=75.1
Q ss_pred ccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH-
Q psy1760 210 DKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG- 288 (793)
Q Consensus 210 e~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~- 288 (793)
..+|+++|.+|+|||||+|+|++..... .....+.|.........+++..+++|||||..+...
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg~~~~~---------------v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~ 95 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFGERKAA---------------TSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMD 95 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCcc---------------cCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhh
Confidence 3599999999999999999999763211 111223455555566678899999999999987631
Q ss_pred -H--------HHHHhh--ccCcEEEEEeCCC-CCCchhHHHHHHHHH-cC----CccEEEEecccCCC
Q psy1760 289 -E--------VERILS--MVDNVLLLIDAVE-GPMPQTRFVTRKALK-LG----FKPIVVVNKIDRSN 339 (793)
Q Consensus 289 -e--------v~~~l~--~aD~allVVDa~~-g~~~qt~~~l~~~~~-~~----ip~IvvINKiD~~~ 339 (793)
. +.+++. ..|.+++|..... ........+++.+.+ +| .++++|+||+|...
T Consensus 96 ~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 96 QRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 1 122232 4677777764443 233344455555543 44 36799999999853
No 321
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.05 E-value=9.8e-10 Score=96.06 Aligned_cols=79 Identities=25% Similarity=0.442 Sum_probs=70.1
Q ss_pred CceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEE--eccc
Q psy1760 409 PLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGIE 486 (793)
Q Consensus 409 p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i--~gl~ 486 (793)
||+|+|.+++..+ .|+++.|||.+|++++||.|.+.|. + ...+|++|+.+. .++++|.|||.|++ .+++
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~--~--~~~~V~si~~~~----~~~~~a~aGd~v~~~l~~~~ 71 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPS--K--ESVEVKSIYVDD----EEVDYAVAGENVRLKLKGID 71 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCC--C--cEEEEEEEEECC----eECCEECCCCEEEEEECCCC
Confidence 7999999999988 9999999999999999999999987 3 468999998764 89999999999996 4654
Q ss_pred --eeecCCeEeC
Q psy1760 487 --EICIGSTICD 496 (793)
Q Consensus 487 --~i~iGdtl~~ 496 (793)
++.+||+||+
T Consensus 72 ~~~v~~G~vl~~ 83 (83)
T cd03698 72 EEDISPGDVLCS 83 (83)
T ss_pred HHHCCCCCEEeC
Confidence 6899999985
No 322
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.03 E-value=2.7e-09 Score=111.90 Aligned_cols=171 Identities=26% Similarity=0.255 Sum_probs=108.1
Q ss_pred cceeeeecccCCcceehhhhhhccCcccc---------cccc--ccccccc---hhhccccceEEeeeeeEEee------
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRK---------NQNI--NARIMDS---NEIEKERGITIFSKNCSIEY------ 270 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~---------~~~v--~~~~~D~---~~~e~erGiTi~~~~~~~~~------ 270 (793)
..|+|.|.||+|||||+++|......-.. .... .+-.-|. +......|+-+.+....-..
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~a 131 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRA 131 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhHH
Confidence 57899999999999999999754211000 0000 0111111 11122233333333222221
Q ss_pred ----------cCeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCC
Q psy1760 271 ----------NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA 340 (793)
Q Consensus 271 ----------~~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a 340 (793)
.|+.+.||.|-|.-...-+ ...++|..++|.=+.-|-..|..+ +--+.+--|+||||.|+.++
T Consensus 132 t~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK----~GimEiaDi~vINKaD~~~A 204 (323)
T COG1703 132 TREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIK----AGIMEIADIIVINKADRKGA 204 (323)
T ss_pred HHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHH----hhhhhhhheeeEeccChhhH
Confidence 3788999999997654332 468899999999887777666543 22223345999999998765
Q ss_pred ChhhhHhHHHHHHhhhc--ccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 341 RPEWVVDATFDLFDKLC--ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 341 ~~~~v~~~i~~~~~~l~--~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
+....+++..+.... .....+.-||+-+||.+|. |+++|+++|.+|..
T Consensus 205 --~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~----------Gi~~L~~ai~~h~~ 254 (323)
T COG1703 205 --EKAARELRSALDLLREVWRENGWRPPVVTTSALEGE----------GIDELWDAIEDHRK 254 (323)
T ss_pred --HHHHHHHHHHHHhhcccccccCCCCceeEeeeccCC----------CHHHHHHHHHHHHH
Confidence 344555555554443 3444566799999999998 99999999988764
No 323
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.03 E-value=1.2e-09 Score=112.50 Aligned_cols=164 Identities=18% Similarity=0.199 Sum_probs=100.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceE-EeeeeeEEeec-CeEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGIT-IFSKNCSIEYN-GTRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiT-i~~~~~~~~~~-~~~i~iiDTPGh~df~~ 288 (793)
..|+++|..|+|||||+++|......... ...+. -........+. ..++.+|||+|+.+|..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~ 69 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGY----------------PPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRS 69 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccC----------------CCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHH
Confidence 47999999999999999999865322110 11111 11111111111 46789999999999998
Q ss_pred HHHHHhhccCcEEEEEeCCC--CCCchhHHHHHHHHHc---CCccEEEEecccCCCCChhhh--HhHH-----HHHHhhh
Q psy1760 289 EVERILSMVDNVLLLIDAVE--GPMPQTRFVTRKALKL---GFKPIVVVNKIDRSNARPEWV--VDAT-----FDLFDKL 356 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~--g~~~qt~~~l~~~~~~---~ip~IvvINKiD~~~a~~~~v--~~~i-----~~~~~~l 356 (793)
-+..+...++++++++|... ....-+..+...+... +.|+++|.||+|+........ .+.. .......
T Consensus 70 ~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (219)
T COG1100 70 LRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPK 149 (219)
T ss_pred HHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhH
Confidence 89899999999999999885 3333444444455543 478999999999987532111 1100 0000000
Q ss_pred cccccccCccEEEeecC--CCCcccccccccCCchhhHHHHHhhcC
Q psy1760 357 CATEEQLDFPVIYTSAL--HGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 357 ~~~~~~l~~Pvi~~SA~--~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
...........+.+|++ .+. ++..++..+...+.
T Consensus 150 ~~~~~~~~~~~~~~s~~~~~~~----------~v~~~~~~~~~~~~ 185 (219)
T COG1100 150 AVLPEVANPALLETSAKSLTGP----------NVNELFKELLRKLL 185 (219)
T ss_pred HhhhhhcccceeEeecccCCCc----------CHHHHHHHHHHHHH
Confidence 00000011227889999 665 77777777766553
No 324
>KOG0070|consensus
Probab=99.03 E-value=1.2e-09 Score=106.95 Aligned_cols=157 Identities=14% Similarity=0.164 Sum_probs=112.3
Q ss_pred ccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH
Q psy1760 210 DKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 289 (793)
Q Consensus 210 e~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 289 (793)
+..|.++|--+|||||++..|-.. .+... -=|+......+.|++..+++||.-|+..+..-
T Consensus 17 e~~IlmlGLD~AGKTTILykLk~~--E~vtt-----------------vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~l 77 (181)
T KOG0070|consen 17 EMRILMVGLDAAGKTTILYKLKLG--EIVTT-----------------VPTIGFNVETVEYKNISFTVWDVGGQEKLRPL 77 (181)
T ss_pred eEEEEEEeccCCCceeeeEeeccC--CcccC-----------------CCccccceeEEEEcceEEEEEecCCCcccccc
Confidence 468999999999999999988432 11100 01566777889999999999999999999999
Q ss_pred HHHHhhccCcEEEEEeCCCCC-CchhHH-HHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 290 VERILSMVDNVLLLIDAVEGP-MPQTRF-VTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~-~~qt~~-~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
+..+.+..+++|+|||+++.. .+..++ +.+.+.. .+.|.+++.||.|.+++-. ..++.+.+.-..... ..
T Consensus 78 W~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als---~~ei~~~L~l~~l~~--~~ 152 (181)
T KOG0070|consen 78 WKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS---AAEITNKLGLHSLRS--RN 152 (181)
T ss_pred hhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC---HHHHHhHhhhhccCC--CC
Confidence 999999999999999998742 122222 2222222 3678899999999998742 233444443222222 23
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
+-+-.++|.+|. |+.+-+++|.+.+.
T Consensus 153 w~iq~~~a~~G~----------GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 153 WHIQSTCAISGE----------GLYEGLDWLSNNLK 178 (181)
T ss_pred cEEeeccccccc----------cHHHHHHHHHHHHh
Confidence 457789999998 88888888876654
No 325
>KOG0098|consensus
Probab=99.03 E-value=7.8e-10 Score=107.68 Aligned_cols=154 Identities=18% Similarity=0.153 Sum_probs=102.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
..+.++|..|+|||.|+-++..+...... | ..-|+........++-+..+++||||.|++.|..-+
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~~~h---------d-----~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~ 72 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQPVH---------D-----LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVT 72 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCccccc---------c-----ceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHH
Confidence 36789999999999999988755222111 1 011333333344455456789999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCC-chhHHHHHHHHHc---CCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~~---~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
.++.+.|-++|||.|.+.... .....++..++.. +..++++.||+|+...+ ++-++--+.|.+ +-.++
T Consensus 73 ~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR--~Vs~EEGeaFA~------ehgLi 144 (216)
T KOG0098|consen 73 RSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR--EVSKEEGEAFAR------EHGLI 144 (216)
T ss_pred HHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccc--cccHHHHHHHHH------HcCce
Confidence 999999999999999876422 2333455555554 44567788999997654 333332333322 12456
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHH
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAIL 396 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~ 396 (793)
...+||+++. |+++.|..+.
T Consensus 145 fmETSakt~~----------~VEEaF~nta 164 (216)
T KOG0098|consen 145 FMETSAKTAE----------NVEEAFINTA 164 (216)
T ss_pred eehhhhhhhh----------hHHHHHHHHH
Confidence 7899999998 6666555443
No 326
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.02 E-value=3.1e-10 Score=113.11 Aligned_cols=123 Identities=19% Similarity=0.303 Sum_probs=72.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee---cCeEEEEecCCCcccch
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY---NGTRINIIDTPGHADFG 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~---~~~~i~iiDTPGh~df~ 287 (793)
..|.|+|+.|+|||+|...|........ + +++ .....+.. .+..+.+||+|||....
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T--------~-----------tS~-e~n~~~~~~~~~~~~~~lvD~PGH~rlr 63 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPT--------V-----------TSM-ENNIAYNVNNSKGKKLRLVDIPGHPRLR 63 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B----------------------S-SEEEECCGSSTCGTCECEEEETT-HCCC
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCe--------e-----------ccc-cCCceEEeecCCCCEEEEEECCCcHHHH
Confidence 4789999999999999999987621110 0 011 11111212 35689999999999988
Q ss_pred HHHHHH---hhccCcEEEEEeCCCCCCchhHHHHHHHH---------HcCCccEEEEecccCCCCChh-hhHhHHHHHHh
Q psy1760 288 GEVERI---LSMVDNVLLLIDAVEGPMPQTRFVTRKAL---------KLGFKPIVVVNKIDRSNARPE-WVVDATFDLFD 354 (793)
Q Consensus 288 ~ev~~~---l~~aD~allVVDa~~g~~~qt~~~l~~~~---------~~~ip~IvvINKiD~~~a~~~-~v~~~i~~~~~ 354 (793)
...... +..+.++|+|||++. ...+-+.+.+.+. ..++|++|++||.|+..+.+. .+...++..+.
T Consensus 64 ~~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei~ 142 (181)
T PF09439_consen 64 SKLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEID 142 (181)
T ss_dssp HHHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHHH
T ss_pred HHHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHHH
Confidence 877765 889999999999974 1111222222111 256788999999999887643 33334444433
No 327
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.01 E-value=1.6e-09 Score=115.18 Aligned_cols=159 Identities=18% Similarity=0.164 Sum_probs=102.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee-cCeEEEEecCCCccc----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGHAD---- 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~-~~~~i~iiDTPGh~d---- 285 (793)
..|+++|.||+|||||++++......+. ..+-+|+.+....+.. .+..+.+-|.||..+
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIa----------------dYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~ 223 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIA----------------DYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASE 223 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCccc----------------CCccccccCcccEEEecCCCcEEEecCccccccccc
Confidence 3578999999999999999976533322 2234566666666665 456799999999743
Q ss_pred ---chHHHHHHhhccCcEEEEEeCCCCC----CchhHHHHHHHHH-----cCCccEEEEecccCCCCChhhhHhHHHHHH
Q psy1760 286 ---FGGEVERILSMVDNVLLLIDAVEGP----MPQTRFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLF 353 (793)
Q Consensus 286 ---f~~ev~~~l~~aD~allVVDa~~g~----~~qt~~~l~~~~~-----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~ 353 (793)
..-...+.+..+-..++|||.+.-- ...-..+...+.+ .+.|.+||.||+|...+ ++..++..+.+
T Consensus 224 G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~--~e~~~~~~~~l 301 (369)
T COG0536 224 GVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD--EEELEELKKAL 301 (369)
T ss_pred CCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC--HHHHHHHHHHH
Confidence 3333445556689999999987432 2222334444444 35788999999996653 23334443333
Q ss_pred hhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 354 DKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 354 ~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
.+... ..+.+++||.+++ |+++|++.+.+.+...
T Consensus 302 ~~~~~-----~~~~~~ISa~t~~----------g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 302 AEALG-----WEVFYLISALTRE----------GLDELLRALAELLEET 335 (369)
T ss_pred HHhcC-----CCcceeeehhccc----------CHHHHHHHHHHHHHHh
Confidence 32111 1122339999998 8888888887665443
No 328
>PTZ00099 rab6; Provisional
Probab=99.00 E-value=2e-09 Score=107.74 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=80.4
Q ss_pred CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH---cCCccEEEEecccCCCCChhhhHh
Q psy1760 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVD 347 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~ 347 (793)
...+.||||||+..|...+...++.||++|+|+|+++...-+. ..++..+.. .++|+|+|.||+|+...+.. ..+
T Consensus 28 ~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v-~~~ 106 (176)
T PTZ00099 28 PVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKV-TYE 106 (176)
T ss_pred EEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCC-CHH
Confidence 4688999999999999988899999999999999987432222 233333332 24677999999999653211 111
Q ss_pred HHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCc
Q psy1760 348 ATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 403 (793)
Q Consensus 348 ~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 403 (793)
+...... ....+++.+||++|. |++.+|+.|.+.+|...
T Consensus 107 e~~~~~~-------~~~~~~~e~SAk~g~----------nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 107 EGMQKAQ-------EYNTMFHETSAKAGH----------NIKVLFKKIAAKLPNLD 145 (176)
T ss_pred HHHHHHH-------HcCCEEEEEECCCCC----------CHHHHHHHHHHHHHhcc
Confidence 2222211 123457899999998 99999999999887643
No 329
>KOG0076|consensus
Probab=99.00 E-value=8.1e-10 Score=106.41 Aligned_cols=166 Identities=19% Similarity=0.199 Sum_probs=115.6
Q ss_pred cceeeeecccCCcceehhhhhhcc-CccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQS-GTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 289 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~-~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 289 (793)
-++.|.|.-++||||+++++-... +.... ++.... -.|+.....++...+..+.+||.-|.......
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~--------l~~~ki----~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSl 85 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGG--------LNPSKI----TPTVGLNIGTIEVCNAPLSFWDLGGQESLRSL 85 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhhcC--------CCHHHe----ecccceeecceeeccceeEEEEcCChHHHHHH
Confidence 488999999999999999984331 11100 011110 12556666777778899999999999999999
Q ss_pred HHHHhhccCcEEEEEeCCCC-CCc----hhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 290 VERILSMVDNVLLLIDAVEG-PMP----QTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g-~~~----qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
+..+...|++++++|||++. -.+ +-+.+...-...|+|+++..||-|+.++- ...++...|.. .......+
T Consensus 86 w~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~---~~~El~~~~~~-~e~~~~rd 161 (197)
T KOG0076|consen 86 WKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM---EAAELDGVFGL-AELIPRRD 161 (197)
T ss_pred HHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh---hHHHHHHHhhh-hhhcCCcc
Confidence 99999999999999999973 122 22233444445799999999999998753 23444444443 22223346
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
.|+.++||++|. |+.+-.++++..++..
T Consensus 162 ~~~~pvSal~ge----------gv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 162 NPFQPVSALTGE----------GVKEGIEWLVKKLEKN 189 (197)
T ss_pred Cccccchhhhcc----------cHHHHHHHHHHHHhhc
Confidence 889999999998 7766677776666543
No 330
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.00 E-value=1.5e-09 Score=118.74 Aligned_cols=153 Identities=17% Similarity=0.195 Sum_probs=97.2
Q ss_pred ceeeeecccCCcceehhhhhhccCccccc-cccccccccchhhccccc---eEEeeee---eEEeec-----CeEEEEec
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKN-QNINARIMDSNEIEKERG---ITIFSKN---CSIEYN-----GTRINIID 279 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~-~~v~~~~~D~~~~e~erG---iTi~~~~---~~~~~~-----~~~i~iiD 279 (793)
-|+++|++++|||||+++|..+.-...-. .....+..|..+ ....| +|.++.. ..++.. ..++.++|
T Consensus 19 yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELp-qs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlID 97 (492)
T TIGR02836 19 YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELP-QSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVD 97 (492)
T ss_pred EEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccC-cCCCCCCcccCCCccccCcceEEeccCCCcccEEEEE
Confidence 68999999999999999998773221111 000122223222 23457 5555555 334432 25899999
Q ss_pred CCCcccch-------HH----------------------HHHHhh-ccCcEEEEE-eCC------CCCCchhHHHHHHHH
Q psy1760 280 TPGHADFG-------GE----------------------VERILS-MVDNVLLLI-DAV------EGPMPQTRFVTRKAL 322 (793)
Q Consensus 280 TPGh~df~-------~e----------------------v~~~l~-~aD~allVV-Da~------~g~~~qt~~~l~~~~ 322 (793)
|+|+.+-+ .. +...+. .+|.+|+|. |++ ++.......++..++
T Consensus 98 cvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk 177 (492)
T TIGR02836 98 CVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELK 177 (492)
T ss_pred CCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHH
Confidence 99975411 11 344566 899999999 886 455566778899999
Q ss_pred HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEeecCCC
Q psy1760 323 KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHG 375 (793)
Q Consensus 323 ~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g 375 (793)
+.++|+|+++||.|-.........+++.+. .++|++++|+.+-
T Consensus 178 ~~~kPfiivlN~~dp~~~et~~l~~~l~ek----------y~vpvl~v~c~~l 220 (492)
T TIGR02836 178 ELNKPFIILLNSTHPYHPETEALRQELEEK----------YDVPVLAMDVESM 220 (492)
T ss_pred hcCCCEEEEEECcCCCCchhHHHHHHHHHH----------hCCceEEEEHHHc
Confidence 999999999999994322222222333222 2467888887653
No 331
>KOG0079|consensus
Probab=98.99 E-value=2e-09 Score=100.75 Aligned_cols=154 Identities=21% Similarity=0.236 Sum_probs=105.4
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec--CeEEEEecCCCcccchHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGGE 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~--~~~i~iiDTPGh~df~~e 289 (793)
...|+|.+++|||+|+-++.... +.. +.. --|-++.+...++.+ ..++.||||+|.+.|...
T Consensus 10 kllIigDsgVGKssLl~rF~ddt--Fs~----------sYi----tTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrti 73 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDT--FSG----------SYI----TTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTI 73 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhcc--ccc----------ceE----EEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHH
Confidence 55789999999999998875431 110 000 011223344444444 468899999999999999
Q ss_pred HHHHhhccCcEEEEEeCCCCCC-chhHHHHHHHHHc--CCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 290 VERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~~--~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
...+.+..+++++|.|.+.+.. ...+.+++.+... .+|-++|.||.|.++.+.-.. ++.+.. ..+.++.
T Consensus 74 tstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t-~dAr~~-------A~~mgie 145 (198)
T KOG0079|consen 74 TSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDT-EDARAF-------ALQMGIE 145 (198)
T ss_pred HHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeeh-HHHHHH-------HHhcCch
Confidence 9999999999999999998743 4455667766653 467799999999987542211 111221 1234566
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
+|.+||+... |+++.+..|...+
T Consensus 146 ~FETSaKe~~----------NvE~mF~cit~qv 168 (198)
T KOG0079|consen 146 LFETSAKENE----------NVEAMFHCITKQV 168 (198)
T ss_pred heehhhhhcc----------cchHHHHHHHHHH
Confidence 8999999987 7777787776544
No 332
>KOG0087|consensus
Probab=98.98 E-value=1.5e-09 Score=108.10 Aligned_cols=150 Identities=17% Similarity=0.188 Sum_probs=98.9
Q ss_pred cccccccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcc
Q psy1760 205 DKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA 284 (793)
Q Consensus 205 g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~ 284 (793)
..++.-..|.++|.+++|||-|+.++......+.... --|+........++-+-.+.+||||+|+.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~Sks--------------TIGvef~t~t~~vd~k~vkaqIWDTAGQE 74 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKS--------------TIGVEFATRTVNVDGKTVKAQIWDTAGQE 74 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCccccc--------------ceeEEEEeeceeecCcEEEEeeecccchh
Confidence 3444446899999999999999999976532221110 11333333333444444678999999999
Q ss_pred cchHHHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHHc---CCccEEEEecccCCCCChhhhHhHHHHHHhhhcccc
Q psy1760 285 DFGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 360 (793)
Q Consensus 285 df~~ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~~---~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~ 360 (793)
.|..-...+.+.|-+|+||.|.+....-+. ..+++.++.+ ++++++|.||+|+...+ .+-.+--..|.+
T Consensus 75 RyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lr--aV~te~~k~~Ae----- 147 (222)
T KOG0087|consen 75 RYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLR--AVPTEDGKAFAE----- 147 (222)
T ss_pred hhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhcc--ccchhhhHhHHH-----
Confidence 999888888999999999999986543332 3455566543 57888999999997632 121111112211
Q ss_pred cccCccEEEeecCCCC
Q psy1760 361 EQLDFPVIYTSALHGY 376 (793)
Q Consensus 361 ~~l~~Pvi~~SA~~g~ 376 (793)
....+++.+||+.+.
T Consensus 148 -~~~l~f~EtSAl~~t 162 (222)
T KOG0087|consen 148 -KEGLFFLETSALDAT 162 (222)
T ss_pred -hcCceEEEecccccc
Confidence 113468999999988
No 333
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.97 E-value=4.6e-09 Score=114.18 Aligned_cols=113 Identities=22% Similarity=0.182 Sum_probs=68.7
Q ss_pred cCeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhh-hHhHH
Q psy1760 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEW-VVDAT 349 (793)
Q Consensus 271 ~~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~-v~~~i 349 (793)
.++.+.|+||||..... ...+..+|.++++.+...+.. ...... .-.++|.++|+||+|+..+.... ....+
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~e---l~~~~~-~l~~~~~ivv~NK~Dl~~~~~~~~~~~~~ 197 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDD---LQGIKA-GLMEIADIYVVNKADGEGATNVTIARLML 197 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHH---HHHHHH-HHhhhccEEEEEcccccchhHHHHHHHHH
Confidence 47899999999975322 235788999998865543311 111111 12467889999999997643111 11111
Q ss_pred HHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 350 FDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 350 ~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
...+..+......+..|++++||++|. |+++|+++|.+++.
T Consensus 198 ~~~l~~l~~~~~~~~~~v~~iSA~~g~----------Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 198 ALALEEIRRREDGWRPPVLTTSAVEGR----------GIDELWDAIEEHKT 238 (300)
T ss_pred HHHHhhccccccCCCCCEEEEEccCCC----------CHHHHHHHHHHHHH
Confidence 111122211111233579999999998 89999998877643
No 334
>PLN00023 GTP-binding protein; Provisional
Probab=98.97 E-value=2.9e-09 Score=114.86 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=77.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee-------------cCeEEEE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-------------NGTRINI 277 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~-------------~~~~i~i 277 (793)
.+|+++|+.++|||||+.+++....... ....-|.+.......+.. ..+.++|
T Consensus 22 iKIVLLGdsGVGKTSLI~rf~~g~F~~~--------------~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqI 87 (334)
T PLN00023 22 VRVLVVGDSGVGKSSLVHLIVKGSSIAR--------------PPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVEL 87 (334)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCcccc--------------cCCceeeeEEEEEEEECCcccccccccccCCceEEEEE
Confidence 4789999999999999999985421100 011112222222222210 2367999
Q ss_pred ecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHHc---------------CCccEEEEecccCCCC
Q psy1760 278 IDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALKL---------------GFKPIVVVNKIDRSNA 340 (793)
Q Consensus 278 iDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~~---------------~ip~IvvINKiD~~~a 340 (793)
|||+|+..|.......++.+|++|+|+|.++.-... ...++..+... ++|+|+|.||+|+...
T Consensus 88 WDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 88 WDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred EECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 999999999988888899999999999998732221 22333444432 3688999999999653
No 335
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.95 E-value=5.2e-10 Score=95.34 Aligned_cols=72 Identities=33% Similarity=0.505 Sum_probs=63.2
Q ss_pred ceEEEEEEeecccccCCEEEEecCCCCC-CCceeEeEEEEeecCceEEecccCCCcEEEEeccce-eecCCeEe
Q psy1760 424 GKIGIGRILSGRIKSLQDVVIMNGPDDK-PNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEE-ICIGSTIC 495 (793)
Q Consensus 424 G~v~~grV~sG~lk~G~~v~~~~~~~g~-~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~-i~iGdtl~ 495 (793)
|++++|||++|+|++||.|.+.+...++ ....+|++|+.+++....++..+.||+++++.++++ +.+|||||
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 7899999999999999999997631111 234899999999999999999999999999999999 89999997
No 336
>PRK13768 GTPase; Provisional
Probab=98.93 E-value=1.7e-09 Score=114.66 Aligned_cols=121 Identities=28% Similarity=0.261 Sum_probs=77.0
Q ss_pred CeEEEEecCCCcccch---HHH---HHHhhc--cCcEEEEEeCCCCCCchhHHHHHHHH-----HcCCccEEEEecccCC
Q psy1760 272 GTRINIIDTPGHADFG---GEV---ERILSM--VDNVLLLIDAVEGPMPQTRFVTRKAL-----KLGFKPIVVVNKIDRS 338 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~---~ev---~~~l~~--aD~allVVDa~~g~~~qt~~~l~~~~-----~~~ip~IvvINKiD~~ 338 (793)
+..+.+|||||+.++. ... .+.+.. ++++++|+|+..+..+.+......+. ..+.|+++|+||+|+.
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 3479999999976632 222 222333 89999999998877666644333222 5789999999999997
Q ss_pred CCC-hhhhHhHHHH---HHhhhcc----------------cccccCccEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 339 NAR-PEWVVDATFD---LFDKLCA----------------TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 339 ~a~-~~~v~~~i~~---~~~~l~~----------------~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
+.. .++..+.+.+ ++..+.. ..-....+++++||+++. |+++|++.|.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~----------gl~~L~~~I~~~ 245 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGE----------GFDELYAAIQEV 245 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCc----------CHHHHHHHHHHH
Confidence 542 1222221111 1111100 000112579999999998 999999999998
Q ss_pred cCcC
Q psy1760 399 VPVH 402 (793)
Q Consensus 399 lp~p 402 (793)
+|.-
T Consensus 246 l~~~ 249 (253)
T PRK13768 246 FCGG 249 (253)
T ss_pred cCCC
Confidence 8753
No 337
>KOG0090|consensus
Probab=98.90 E-value=1.1e-08 Score=102.11 Aligned_cols=118 Identities=18% Similarity=0.260 Sum_probs=85.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
..|-++|..|+|||+|.-+|...+... .-+++....+.+.+++...++||.|||.......
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~-------------------TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl 99 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRG-------------------TVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKL 99 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccC-------------------eeeeeccceeeEeecCcceEEEeCCCcHHHHHHH
Confidence 578999999999999999997552110 1135556667777777789999999999888877
Q ss_pred HHHhh---ccCcEEEEEeCCCCCC---chhHHHHHHHH-----HcCCccEEEEecccCCCCChhhhHh
Q psy1760 291 ERILS---MVDNVLLLIDAVEGPM---PQTRFVTRKAL-----KLGFKPIVVVNKIDRSNARPEWVVD 347 (793)
Q Consensus 291 ~~~l~---~aD~allVVDa~~g~~---~qt~~~l~~~~-----~~~ip~IvvINKiD~~~a~~~~v~~ 347 (793)
...+. .+-++|+|||+..-.. .-..++...+. ..++|++++.||-|+.-|+..+.+.
T Consensus 100 ~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir 167 (238)
T KOG0090|consen 100 LEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIR 167 (238)
T ss_pred HHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHH
Confidence 77776 7899999999875322 11122222222 3467889999999999887655443
No 338
>KOG0086|consensus
Probab=98.89 E-value=6.5e-09 Score=97.69 Aligned_cols=145 Identities=19% Similarity=0.187 Sum_probs=97.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
..+.++|+.|.|||.|+.++...... .+....-|+...+....+-.+..++.||||+|+..|..-.
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfk--------------DdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVt 75 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFK--------------DDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVT 75 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhc--------------ccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHH
Confidence 46789999999999999999865211 1122233555555555555566899999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHHcCCc---cEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALKLGFK---PIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~~~ip---~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
.++.+.|-+++||.|++....-. ...++..++.+--| +|++.||-|+...+--. ..+...+ .. +. ..-
T Consensus 76 RsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~Vt-flEAs~F----aq-En--el~ 147 (214)
T KOG0086|consen 76 RSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVT-FLEASRF----AQ-EN--ELM 147 (214)
T ss_pred HHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhh-HHHHHhh----hc-cc--cee
Confidence 99999999999999998643222 22345555555444 45667999997654211 1121111 11 11 234
Q ss_pred EEEeecCCCCc
Q psy1760 367 VIYTSALHGYA 377 (793)
Q Consensus 367 vi~~SA~~g~~ 377 (793)
....||++|.|
T Consensus 148 flETSa~TGeN 158 (214)
T KOG0086|consen 148 FLETSALTGEN 158 (214)
T ss_pred eeeeccccccc
Confidence 68899999983
No 339
>cd01291 PseudoU_synth PseudoU_synth: Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Pseudouridine synthases contains the RsuA/RluD, TruA, TruB and TruD families. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases. Some psi sites such as psi55,13,38 and 39 in tRNA are highly conserved, being in the same position in eubacteria, archeabacteria and eukaryotes. Other psi sites occur in a more restricted fashion, for example psi2604in 23S RNA made by E.coli RluF has only been detected in E.coli. Human dyskerin with the help of guide RNAs makes the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Mutations in human dyskerin cause X-linked dyskeratosis congenitas. Missense mutation in human PUS1 causes mitochondrial myopathy and sideroblastic anemia (MLASA).
Probab=98.88 E-value=5.2e-09 Score=92.34 Aligned_cols=50 Identities=26% Similarity=0.329 Sum_probs=44.5
Q ss_pred eeCCCCCChHHHHHHHH-HHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEE
Q psy1760 15 KYKPYGLSSNNALKKIK-YLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIH 79 (793)
Q Consensus 15 ~~Kp~g~ts~~~v~~~~-~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~ 79 (793)
|+||.++|++.+....+ ..++.+++||+|++|+.|+|++++| |+|+.+++
T Consensus 1 l~K~~~~t~~~~~~~~~~~~~~~~~i~~aG~kDk~a~t~q~v~---------------n~f~i~~r 51 (87)
T cd01291 1 LYKPGGDTMEAARQLAKLLGIPPKRVGYAGRKDKRAVTTQLVS---------------NRFTITLR 51 (87)
T ss_pred CCCCCCChHHHHHHHHHHhCCChheEEECccCCCCeeEEEEEc---------------ccEEEEEE
Confidence 68998888888888876 4567789999999999999999999 89999998
No 340
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.88 E-value=1.2e-08 Score=114.53 Aligned_cols=80 Identities=18% Similarity=0.186 Sum_probs=53.4
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEe----------------------
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE---------------------- 269 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~---------------------- 269 (793)
.|+|+|.||+|||||+++|....... ....+.|+.+......
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~~~~~----------------~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~ 66 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLADVEI----------------ANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCI 66 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcccc----------------cCCCCcceeeeeeeeeeccCCchhhhhhhhcccccccc
Confidence 68999999999999999998652211 1112233333222111
Q ss_pred --ecCeEEEEecCCCccc-------chHHHHHHhhccCcEEEEEeCC
Q psy1760 270 --YNGTRINIIDTPGHAD-------FGGEVERILSMVDNVLLLIDAV 307 (793)
Q Consensus 270 --~~~~~i~iiDTPGh~d-------f~~ev~~~l~~aD~allVVDa~ 307 (793)
+....++++||||..+ ......+.++.||++++|+|+.
T Consensus 67 ~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 67 DGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 1235789999999632 2335556689999999999997
No 341
>KOG0395|consensus
Probab=98.85 E-value=1.6e-08 Score=102.84 Aligned_cols=158 Identities=18% Similarity=0.225 Sum_probs=104.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+++++|.+|+|||+|+-+++.....-... ... + +.......+.-....+.|+||+|..+|...-
T Consensus 4 ~kvvvlG~~gVGKSal~~qf~~~~f~~~y~---------pti---e---d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~ 68 (196)
T KOG0395|consen 4 YKVVVLGAGGVGKSALTIQFLTGRFVEDYD---------PTI---E---DSYRKELTVDGEVCMLEILDTAGQEEFSAMR 68 (196)
T ss_pred eEEEEECCCCCCcchheeeecccccccccC---------CCc---c---ccceEEEEECCEEEEEEEEcCCCcccChHHH
Confidence 478999999999999999998653221111 110 1 1122223333334567799999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCc-hhHHHHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMP-QTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
...+..+|+.++|++.++...- ....++..+. ...+|+++|.||+|+...+.. ..++-..+ ...+.+
T Consensus 69 ~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V-~~eeg~~l-------a~~~~~ 140 (196)
T KOG0395|consen 69 DLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQV-SEEEGKAL-------ARSWGC 140 (196)
T ss_pred HHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhcccc-CHHHHHHH-------HHhcCC
Confidence 9999999999999999874322 2222333332 234799999999999864311 12222222 123467
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+.+.+||+... +++++|..|+..+..
T Consensus 141 ~f~E~Sak~~~----------~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 141 AFIETSAKLNY----------NVDEVFYELVREIRL 166 (196)
T ss_pred cEEEeeccCCc----------CHHHHHHHHHHHHHh
Confidence 79999999987 888888888765544
No 342
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=98.84 E-value=1.6e-08 Score=88.20 Aligned_cols=78 Identities=31% Similarity=0.471 Sum_probs=67.1
Q ss_pred CceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--cc-
Q psy1760 409 PLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GI- 485 (793)
Q Consensus 409 p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--gl- 485 (793)
||+|.|.+++... |+++.|||.+|++++||.+.+.|. + ...+|++|+.+. .++++|.|||.|++. ++
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~--~--~~~~V~si~~~~----~~~~~a~aGd~v~l~l~~i~ 70 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPN--K--TQVEVLSIYNED----VEVRYARPGENVRLRLKGIE 70 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCC--C--cEEEEEEEEECC----EECCEECCCCEEEEEecCCC
Confidence 7899999998754 899999999999999999999987 3 468999998664 799999999999984 44
Q ss_pred -ceeecCCeEeC
Q psy1760 486 -EEICIGSTICD 496 (793)
Q Consensus 486 -~~i~iGdtl~~ 496 (793)
+++..||.||+
T Consensus 71 ~~~v~~G~vl~~ 82 (82)
T cd04089 71 EEDISPGFVLCS 82 (82)
T ss_pred HHHCCCCCEEeC
Confidence 45789999974
No 343
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.84 E-value=6.1e-09 Score=95.26 Aligned_cols=138 Identities=26% Similarity=0.288 Sum_probs=93.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCC----cccc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPG----HADF 286 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPG----h~df 286 (793)
.+++++|.+++|||||+++|.+..... -+...++|++. -.||||| |...
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~ly-------------------------kKTQAve~~d~--~~IDTPGEy~~~~~~ 54 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLY-------------------------KKTQAVEFNDK--GDIDTPGEYFEHPRW 54 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhh-------------------------cccceeeccCc--cccCCchhhhhhhHH
Confidence 368999999999999999997652222 22234555442 3689999 3444
Q ss_pred hHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 287 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 287 ~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
-......+..+|.+++|-.+.++.. ++--..+.-...|+|=+|+|+|++. +.-++..+..+.+.|+. |
T Consensus 55 Y~aL~tt~~dadvi~~v~~and~~s---~f~p~f~~~~~k~vIgvVTK~DLae---d~dI~~~~~~L~eaGa~------~ 122 (148)
T COG4917 55 YHALITTLQDADVIIYVHAANDPES---RFPPGFLDIGVKKVIGVVTKADLAE---DADISLVKRWLREAGAE------P 122 (148)
T ss_pred HHHHHHHhhccceeeeeecccCccc---cCCcccccccccceEEEEecccccc---hHhHHHHHHHHHHcCCc------c
Confidence 3444555778999999999988532 2212223334456788999999983 22344445555555643 6
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
||.+|+.+.. |+++|++.|..
T Consensus 123 IF~~s~~d~~----------gv~~l~~~L~~ 143 (148)
T COG4917 123 IFETSAVDNQ----------GVEELVDYLAS 143 (148)
T ss_pred eEEEeccCcc----------cHHHHHHHHHh
Confidence 9999999886 99999988853
No 344
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=98.83 E-value=1.7e-08 Score=89.01 Aligned_cols=82 Identities=27% Similarity=0.371 Sum_probs=69.9
Q ss_pred ceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--cc--
Q psy1760 410 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GI-- 485 (793)
Q Consensus 410 ~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--gl-- 485 (793)
|+|.|.+++..++.|.+..|||.+|++++||.+.+.+. +.....+|++|+.+. .++++|.|||.|+++ ++
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~--~~~~~~~V~si~~~~----~~~~~a~~G~~v~l~l~~~~~ 74 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGF--GETLKTTVTGIEMFR----KTLDEAEAGDNVGVLLRGVKR 74 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCC--CCCceEEEEEEEECC----cCCCEECCCCEEEEEECCCCH
Confidence 68899999998999999999999999999999999875 213467899998664 789999999999984 55
Q ss_pred ceeecCCeEeCC
Q psy1760 486 EEICIGSTICDP 497 (793)
Q Consensus 486 ~~i~iGdtl~~~ 497 (793)
+++..|+.||++
T Consensus 75 ~~v~rG~vl~~~ 86 (87)
T cd03697 75 EDVERGMVLAKP 86 (87)
T ss_pred HHcCCccEEecC
Confidence 468899999875
No 345
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=98.83 E-value=2.3e-08 Score=86.98 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=68.4
Q ss_pred ceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--ccce
Q psy1760 410 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GIEE 487 (793)
Q Consensus 410 ~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--gl~~ 487 (793)
|+|.|.+++.....|+.+.|||.+|++++||++.++|. ....+|++|+.+. .++++|.|||.|+|. +-++
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~----~~~~~V~si~~~~----~~~~~a~aGd~v~l~l~~~~~ 72 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPS----GKTSRVKSIETFD----GELDEAGAGESVTLTLEDEID 72 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCC----CCeEEEEEEEECC----cEeCEEcCCCEEEEEECCccc
Confidence 68999999987777888999999999999999999987 3468999999765 789999999999884 5567
Q ss_pred eecCCeEeC
Q psy1760 488 ICIGSTICD 496 (793)
Q Consensus 488 i~iGdtl~~ 496 (793)
+.+||.||.
T Consensus 73 i~~G~vl~~ 81 (81)
T cd03695 73 VSRGDVIVA 81 (81)
T ss_pred cCCCCEEeC
Confidence 899999974
No 346
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=98.82 E-value=1.9e-08 Score=88.74 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=70.3
Q ss_pred ceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--cc--
Q psy1760 410 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GI-- 485 (793)
Q Consensus 410 ~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--gl-- 485 (793)
|+|.|.+++..+..|.++.|||.+|++++||.+.+.|..+|+....+|++|+.+. .++++|.|||.|++. ++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~----~~~~~a~aGd~v~l~l~~i~~ 76 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNR----SPVRVVRAGQSASLALKKIDR 76 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECC----eECCEECCCCEEEEEEcCCCH
Confidence 5789999999999999999999999999999999998733433578999998664 899999999999984 54
Q ss_pred ceeecCCeEeC
Q psy1760 486 EEICIGSTICD 496 (793)
Q Consensus 486 ~~i~iGdtl~~ 496 (793)
+++..|+.||.
T Consensus 77 ~~i~~G~vl~~ 87 (87)
T cd03694 77 SLLRKGMVLVS 87 (87)
T ss_pred HHcCCccEEeC
Confidence 46788999874
No 347
>KOG1532|consensus
Probab=98.79 E-value=1e-08 Score=105.47 Aligned_cols=180 Identities=21% Similarity=0.268 Sum_probs=104.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccc-----------------------cccccchhhccccceEEeeeeeE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN-----------------------ARIMDSNEIEKERGITIFSKNCS 267 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~-----------------------~~~~D~~~~e~erGiTi~~~~~~ 267 (793)
..|.++|..|+||||++.+|..+...-..+..+. ..+|....+....||+.......
T Consensus 20 ~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF~ 99 (366)
T KOG1532|consen 20 VIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLFA 99 (366)
T ss_pred cEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHHHH
Confidence 4678899999999999999976543322211110 12344444555666654433322
Q ss_pred Eee-----------cCeEEEEecCCCccc-chHH-----HHHHh-h-ccCcEEEEEeCCCCCCchh-----HHHHHHHHH
Q psy1760 268 IEY-----------NGTRINIIDTPGHAD-FGGE-----VERIL-S-MVDNVLLLIDAVEGPMPQT-----RFVTRKALK 323 (793)
Q Consensus 268 ~~~-----------~~~~i~iiDTPGh~d-f~~e-----v~~~l-~-~aD~allVVDa~~g~~~qt-----~~~l~~~~~ 323 (793)
..+ ...++.||||||+.+ |... +...+ + ..-++++|+|....-.+.| ......+.+
T Consensus 100 tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk 179 (366)
T KOG1532|consen 100 TKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK 179 (366)
T ss_pred HHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh
Confidence 222 235789999999764 3211 11222 2 2356788999876544444 223344556
Q ss_pred cCCccEEEEecccCCCCChhhhHhHHHHHHhh-hcc-----------------cccccCccEEEeecCCCCccccccccc
Q psy1760 324 LGFKPIVVVNKIDRSNARPEWVVDATFDLFDK-LCA-----------------TEEQLDFPVIYTSALHGYANENSKARQ 385 (793)
Q Consensus 324 ~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~-l~~-----------------~~~~l~~Pvi~~SA~~g~~~~~~~~~~ 385 (793)
..+|.||+.||+|..+..+..-.-+-++.|.+ +.. ..--....++.+|+.+|.
T Consensus 180 tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~--------- 250 (366)
T KOG1532|consen 180 TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE--------- 250 (366)
T ss_pred ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC---------
Confidence 78999999999999876432211111111111 110 000012568999999998
Q ss_pred CCchhhHHHHHhhcC
Q psy1760 386 GNMIPLFEAILKYVP 400 (793)
Q Consensus 386 ~gi~~Ll~~I~~~lp 400 (793)
|++++|.++.+.+.
T Consensus 251 -G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 251 -GFDDFFTAVDESVD 264 (366)
T ss_pred -cHHHHHHHHHHHHH
Confidence 99999998866553
No 348
>KOG0071|consensus
Probab=98.77 E-value=9.4e-08 Score=89.01 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=107.1
Q ss_pred ccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH
Q psy1760 210 DKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 289 (793)
Q Consensus 210 e~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 289 (793)
|-.|..+|..++||||++-.|.-...... - -|+......+.|++.++|+||..|.....+-
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~---------------i----pTvGFnvetVtykN~kfNvwdvGGqd~iRpl 77 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVTT---------------I----PTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 77 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCccc---------------c----cccceeEEEEEeeeeEEeeeeccCchhhhHH
Confidence 34788999999999999998853321110 0 1344455778899999999999999999999
Q ss_pred HHHHhhccCcEEEEEeCCCCC-CchhH-HHHHHHH---HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 290 VERILSMVDNVLLLIDAVEGP-MPQTR-FVTRKAL---KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~-~~qt~-~~l~~~~---~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
+.++.....++|+|+|+.+.- ....+ ++-+.+. ....+.+|..||-|++++.. .+++.+.|.--...+ ..
T Consensus 78 WrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~---pqei~d~leLe~~r~--~~ 152 (180)
T KOG0071|consen 78 WRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK---PQEIQDKLELERIRD--RN 152 (180)
T ss_pred HHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC---HHHHHHHhccccccC--Cc
Confidence 999999999999999987641 11222 2222221 13567788999999998753 345555543222222 23
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
+-|.++||.+|. |+.+=+.+|.+.+
T Consensus 153 W~vqp~~a~~gd----------gL~eglswlsnn~ 177 (180)
T KOG0071|consen 153 WYVQPSCALSGD----------GLKEGLSWLSNNL 177 (180)
T ss_pred cEeeccccccch----------hHHHHHHHHHhhc
Confidence 558899999997 6666666766554
No 349
>KOG0083|consensus
Probab=98.77 E-value=1.2e-08 Score=93.77 Aligned_cols=154 Identities=23% Similarity=0.273 Sum_probs=98.0
Q ss_pred eeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHHHHh
Q psy1760 215 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERIL 294 (793)
Q Consensus 215 IiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~~~l 294 (793)
++|..+.|||.|+-++- .|++-.. .+ -..-||....+...+.-...++.+|||+|+..|..-...+.
T Consensus 2 llgds~~gktcllir~k--dgafl~~-----~f------istvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayy 68 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFK--DGAFLAG-----NF------ISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYY 68 (192)
T ss_pred ccccCccCceEEEEEec--cCceecC-----ce------eeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhh
Confidence 57999999999986652 2222110 00 01124443333344444457889999999999999999999
Q ss_pred hccCcEEEEEeCCCCC-CchhHHHHHHHHHcC---CccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEe
Q psy1760 295 SMVDNVLLLIDAVEGP-MPQTRFVTRKALKLG---FKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYT 370 (793)
Q Consensus 295 ~~aD~allVVDa~~g~-~~qt~~~l~~~~~~~---ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~ 370 (793)
+.||+.+|+.|..... ....+.++..+.+++ +...++.||+|+...+.-.. ++=..+- +...+|+...
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~-ddg~kla-------~~y~ipfmet 140 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKR-DDGEKLA-------EAYGIPFMET 140 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhcccc-chHHHHH-------HHHCCCceec
Confidence 9999999999987543 344455666666554 45578899999964321100 1111111 1225799999
Q ss_pred ecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 371 SALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 371 SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
||++|. |++.-+-+|.+.+
T Consensus 141 saktg~----------nvd~af~~ia~~l 159 (192)
T KOG0083|consen 141 SAKTGF----------NVDLAFLAIAEEL 159 (192)
T ss_pred cccccc----------cHhHHHHHHHHHH
Confidence 999998 6666665665544
No 350
>KOG0088|consensus
Probab=98.77 E-value=5.3e-09 Score=98.87 Aligned_cols=158 Identities=19% Similarity=0.160 Sum_probs=97.6
Q ss_pred cccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH
Q psy1760 209 LDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 288 (793)
Q Consensus 209 le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 288 (793)
+...++++|..-+|||+|+=+.................+. .+...+.-....++||||+|+..|..
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~--------------~kk~n~ed~ra~L~IWDTAGQErfHA 77 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQ--------------NKKVNVEDCRADLHIWDTAGQERFHA 77 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHh--------------hcccccccceeeeeeeeccchHhhhc
Confidence 3458899999999999999887754222111111111110 01111221234689999999998865
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhHHHH-HHHH---HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKAL---KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~~~l-~~~~---~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.=--+.+.+|++|||.|.++.-.-|-..-| ..++ ...+..++|.||+|+...+. -..++....-...++
T Consensus 78 LGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~-Vt~qeAe~YAesvGA------ 150 (218)
T KOG0088|consen 78 LGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQ-VTRQEAEAYAESVGA------ 150 (218)
T ss_pred cCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhh-hhHHHHHHHHHhhch------
Confidence 544567899999999999986544443322 2222 23355688999999976532 222333333233333
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
..+.+||+.+. |+.+||+.|...
T Consensus 151 -~y~eTSAk~N~----------Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 151 -LYMETSAKDNV----------GISELFESLTAK 173 (218)
T ss_pred -hheeccccccc----------CHHHHHHHHHHH
Confidence 36889999987 888888877543
No 351
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.75 E-value=5e-08 Score=100.26 Aligned_cols=165 Identities=18% Similarity=0.151 Sum_probs=92.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccc---cccchhhccccceEEe-eeee---------------EEeec
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINAR---IMDSNEIEKERGITIF-SKNC---------------SIEYN 271 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~---~~D~~~~e~erGiTi~-~~~~---------------~~~~~ 271 (793)
++|+++|+.|+|||||+++|+...+...+..-.... -.|....+. .|..+. .... .....
T Consensus 23 ~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~-~~~~~~~l~~gcic~~~~~~~~~~l~~~~~~ 101 (207)
T TIGR00073 23 VVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRK-YGAPAIQINTGKECHLDAHMVAHALEDLPLD 101 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHH-cCCcEEEEcCCCcccCChHHHHHHHHHhccC
Confidence 599999999999999999998764321110100000 123222221 121110 0000 01112
Q ss_pred CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHH
Q psy1760 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFD 351 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~ 351 (793)
+..+.||+|.|....... .....+..+.|+|+.++...+. +.....+.|.++++||+|+.+.... ...++.+
T Consensus 102 ~~d~IiIEt~G~l~~~~~---~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~~~~~-~~~~~~~ 173 (207)
T TIGR00073 102 DIDLLFIENVGNLVCPAD---FDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAEAVGF-DVEKMKA 173 (207)
T ss_pred CCCEEEEecCCCcCCCcc---cccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHccccchh-hHHHHHH
Confidence 457889999993211111 1123456678899886543222 2233346788999999999753211 1223333
Q ss_pred HHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 352 LFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 352 ~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.+..+. ...|++++||++|. |++.+++++.++.
T Consensus 174 ~l~~~~-----~~~~i~~~Sa~~g~----------gv~~l~~~i~~~~ 206 (207)
T TIGR00073 174 DAKKIN-----PEAEIILMSLKTGE----------GLDEWLEFLEGQV 206 (207)
T ss_pred HHHHhC-----CCCCEEEEECCCCC----------CHHHHHHHHHHhh
Confidence 333322 13689999999998 9999999987653
No 352
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=98.74 E-value=4.1e-08 Score=85.76 Aligned_cols=79 Identities=25% Similarity=0.366 Sum_probs=68.5
Q ss_pred ceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--cc--
Q psy1760 410 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GI-- 485 (793)
Q Consensus 410 ~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--gl-- 485 (793)
|+|.|.+++..+..|.++.|||.+|++++||++.+.|. + ...+|++|+.+. .++++|.|||.|+++ ++
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~--~--~~~~V~sI~~~~----~~~~~a~aGd~v~i~l~~~~~ 72 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPL--G--EETRVRSIQVHG----KDVEEAKAGDRVALNLTGVDA 72 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCC--C--ceEEEEEEEECC----cCcCEEcCCCEEEEEEcCCCH
Confidence 68999999999999999999999999999999999987 2 468999998654 788999999999984 54
Q ss_pred ceeecCCeEeC
Q psy1760 486 EEICIGSTICD 496 (793)
Q Consensus 486 ~~i~iGdtl~~ 496 (793)
+++..||.||.
T Consensus 73 ~~i~~G~vl~~ 83 (83)
T cd03696 73 KDLERGDVLSS 83 (83)
T ss_pred HHcCCccEEcC
Confidence 47889999874
No 353
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.74 E-value=7.8e-08 Score=100.62 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=53.2
Q ss_pred eEEEEecCCCcccc---------h----HHHHHHhh-ccCcEEEEEeCCCCCCchh-HHHHHHHHHcCCccEEEEecccC
Q psy1760 273 TRINIIDTPGHADF---------G----GEVERILS-MVDNVLLLIDAVEGPMPQT-RFVTRKALKLGFKPIVVVNKIDR 337 (793)
Q Consensus 273 ~~i~iiDTPGh~df---------~----~ev~~~l~-~aD~allVVDa~~g~~~qt-~~~l~~~~~~~ip~IvvINKiD~ 337 (793)
..++|+||||.... . ..+..+++ ..+.+++|+||..++..+. ..+.+.+...+.|.|+|+||+|.
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~ 204 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDL 204 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCC
Confidence 57999999998532 1 12444566 4568999999999888877 57778888889999999999998
Q ss_pred CCC
Q psy1760 338 SNA 340 (793)
Q Consensus 338 ~~a 340 (793)
...
T Consensus 205 ~~~ 207 (240)
T smart00053 205 MDE 207 (240)
T ss_pred CCc
Confidence 754
No 354
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.71 E-value=7.7e-08 Score=82.06 Aligned_cols=80 Identities=31% Similarity=0.409 Sum_probs=68.6
Q ss_pred ceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccce--
Q psy1760 410 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEE-- 487 (793)
Q Consensus 410 ~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~-- 487 (793)
++++|++++++++.|+++++||++|+|++||.+.+.+. +.....+|.+|+.+. .+++++.|||++++.+.+.
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~--~~~~~~~i~~i~~~~----~~~~~~~aG~~~~~~~~~~~~ 74 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPG--GGGVKGKVKSLKRFK----GEVDEAVAGDIVGIVLKDKDD 74 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecC--CceeEEEEeEeEecC----ceeceecCCCEEEEEEccccc
Confidence 46889999999999999999999999999999999873 224568899998775 6889999999999987654
Q ss_pred eecCCeEe
Q psy1760 488 ICIGSTIC 495 (793)
Q Consensus 488 i~iGdtl~ 495 (793)
+.+||+++
T Consensus 75 ~~~g~~l~ 82 (83)
T cd01342 75 IKIGDTLT 82 (83)
T ss_pred cCCCCEec
Confidence 88999986
No 355
>KOG0072|consensus
Probab=98.69 E-value=7.2e-08 Score=90.19 Aligned_cols=157 Identities=19% Similarity=0.191 Sum_probs=107.7
Q ss_pred cccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH
Q psy1760 209 LDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 288 (793)
Q Consensus 209 le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 288 (793)
.|.++-++|.-|+||||+.-+|- .+...... -|+......+.|++.++++||.-|.-....
T Consensus 17 ~e~rililgldGaGkttIlyrlq--vgevvttk-----------------Ptigfnve~v~yKNLk~~vwdLggqtSirP 77 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQ--VGEVVTTK-----------------PTIGFNVETVPYKNLKFQVWDLGGQTSIRP 77 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcc--cCcccccC-----------------CCCCcCccccccccccceeeEccCcccccH
Confidence 45688999999999999987773 11111000 134445567788999999999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCc--hhHHHHHHHH---HcCCccEEEEecccCCCCChhhhHhHHHHHHh--hhccccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMP--QTRFVTRKAL---KLGFKPIVVVNKIDRSNARPEWVVDATFDLFD--KLCATEE 361 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~--qt~~~l~~~~---~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~--~l~~~~~ 361 (793)
-+..+....|.+|+|||+++-..- .-.++...+. -.+...+|+.||+|-..+- ..+++...+. ++...
T Consensus 78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~---t~~E~~~~L~l~~Lk~r-- 152 (182)
T KOG0072|consen 78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL---TRSEVLKMLGLQKLKDR-- 152 (182)
T ss_pred HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh---hHHHHHHHhChHHHhhh--
Confidence 999999999999999999874322 2222222332 2345568899999987642 2223222221 11111
Q ss_pred ccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 362 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 362 ~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
.+.++..||.+|. |+++.+|+|.+-+.+
T Consensus 153 --~~~Iv~tSA~kg~----------Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 153 --IWQIVKTSAVKGE----------GLDPAMDWLQRPLKS 180 (182)
T ss_pred --eeEEEeecccccc----------CCcHHHHHHHHHHhc
Confidence 2679999999998 999999999776543
No 356
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.69 E-value=5.6e-08 Score=107.05 Aligned_cols=170 Identities=16% Similarity=0.132 Sum_probs=92.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceE-EeeeeeEEeecC-eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGIT-IFSKNCSIEYNG-TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiT-i~~~~~~~~~~~-~~i~iiDTPGh~df~~ 288 (793)
-|||++|.+|+|||||+|+|.+-...-.. . ...|.+ .......+.+.. -.+.+||.||...-.-
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~--a------------A~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f 101 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEG--A------------APTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNF 101 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTT--S--------------SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS-
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcC--c------------CCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCC
Confidence 38999999999999999999653211100 0 001110 001112233333 2589999999743222
Q ss_pred HHHHH-----hhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCC----------CCChhhhHhHHHHHH
Q psy1760 289 EVERI-----LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS----------NARPEWVVDATFDLF 353 (793)
Q Consensus 289 ev~~~-----l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~----------~a~~~~v~~~i~~~~ 353 (793)
....+ +...|..|++.+. ........+++.+..+|.|+.+|-+|+|.. ..+.+++++++++..
T Consensus 102 ~~~~Yl~~~~~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c 179 (376)
T PF05049_consen 102 PPEEYLKEVKFYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENC 179 (376)
T ss_dssp -HHHHHHHTTGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHH
T ss_pred CHHHHHHHccccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHH
Confidence 22333 5667877766553 344556677888899999999999999961 112345666666654
Q ss_pred hhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcC
Q psy1760 354 DKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD 404 (793)
Q Consensus 354 ~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~ 404 (793)
.+.-......+-+||.+|+..-. ..+...|.++|...+|...+
T Consensus 180 ~~~L~k~gv~~P~VFLVS~~dl~--------~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 180 LENLQKAGVSEPQVFLVSSFDLS--------KYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp HHHHHCTT-SS--EEEB-TTTTT--------STTHHHHHHHHHHHS-GGGH
T ss_pred HHHHHHcCCCcCceEEEeCCCcc--------cCChHHHHHHHHHHhHHHHH
Confidence 33211112223468999987532 34788899999999988754
No 357
>KOG0081|consensus
Probab=98.69 E-value=4.5e-08 Score=92.75 Aligned_cols=115 Identities=19% Similarity=0.216 Sum_probs=79.3
Q ss_pred eEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCC-CCchhHHHHHHHHHc----CCccEEEEecccCCCCChhhhHh
Q psy1760 273 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQTRFVTRKALKL----GFKPIVVVNKIDRSNARPEWVVD 347 (793)
Q Consensus 273 ~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g-~~~qt~~~l~~~~~~----~ip~IvvINKiD~~~a~~~~v~~ 347 (793)
..+.+|||+|++.|....-...+.|=+.+|++|-+.. ..-.++.++.+++.. +..++++.||.|+.+.+.- ..+
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~V-s~~ 145 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVV-SED 145 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhh-hHH
Confidence 4678999999999999999999999999999998753 233445555555432 3445788999999875321 112
Q ss_pred HHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 348 ATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 348 ~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+...+- ++...|.+.+||-+|.|+.. .++.|++.+.+.+..
T Consensus 146 qa~~La-------~kyglPYfETSA~tg~Nv~k------ave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 146 QAAALA-------DKYGLPYFETSACTGTNVEK------AVELLLDLVMKRIEQ 186 (219)
T ss_pred HHHHHH-------HHhCCCeeeeccccCcCHHH------HHHHHHHHHHHHHHH
Confidence 222222 23468999999999985543 455666666665543
No 358
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.66 E-value=3.4e-08 Score=97.44 Aligned_cols=64 Identities=22% Similarity=0.248 Sum_probs=45.9
Q ss_pred CeEEEEecCCCcccch----HHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHH-HHcCCccEEEEecc
Q psy1760 272 GTRINIIDTPGHADFG----GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKA-LKLGFKPIVVVNKI 335 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~----~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~-~~~~ip~IvvINKi 335 (793)
...+.|+||||..+.. ..+.+.+..+|++|+|+++......+....+... .......|+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 3569999999985422 4467778999999999999987665555544444 44455668888985
No 359
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.65 E-value=1.5e-07 Score=103.62 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=58.7
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC-----------------eE
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-----------------TR 274 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~-----------------~~ 274 (793)
.++|+|.||+|||||+|+|.+.. ......+++|+++....+.+.+ ..
T Consensus 4 ~vgIVG~PNvGKSTLfnaLt~~~----------------~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~ 67 (364)
T PRK09601 4 KCGIVGLPNVGKSTLFNALTKAG----------------AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPAT 67 (364)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----------------CeecccccccccceEEEEEeccccchhhHHhcCCccccCce
Confidence 68999999999999999997652 1123335666666655555544 25
Q ss_pred EEEecCCCccc-------chHHHHHHhhccCcEEEEEeCCC
Q psy1760 275 INIIDTPGHAD-------FGGEVERILSMVDNVLLLIDAVE 308 (793)
Q Consensus 275 i~iiDTPGh~d-------f~~ev~~~l~~aD~allVVDa~~ 308 (793)
+.++||||... ......+.++.||++++|||+.+
T Consensus 68 i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 68 IEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred EEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 99999999653 22244556889999999999963
No 360
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.65 E-value=2.5e-07 Score=96.23 Aligned_cols=114 Identities=21% Similarity=0.275 Sum_probs=72.6
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee-cCeEEEEecCCCcccchHH-
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGHADFGGE- 289 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~-~~~~i~iiDTPGh~df~~e- 289 (793)
+|.++|..++||||....++.+.... | ...-|.|++.....+.. +...+++||.||+.+|...
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~-----------d----T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~ 65 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR-----------D----TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY 65 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG-----------G----GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch-----------h----ccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc
Confidence 36799999999999999887552211 1 11224566666666654 4569999999999887665
Q ss_pred ----HHHHhhccCcEEEEEeCCCCCCchh----HHHHHHHHHc--CCccEEEEecccCCCC
Q psy1760 290 ----VERILSMVDNVLLLIDAVEGPMPQT----RFVTRKALKL--GFKPIVVVNKIDRSNA 340 (793)
Q Consensus 290 ----v~~~l~~aD~allVVDa~~g~~~qt----~~~l~~~~~~--~ip~IvvINKiD~~~a 340 (793)
.+..++.++++|+|+|+........ ...++.+.+. ++.+.|+++|+|+...
T Consensus 66 ~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 66 FNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp HTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred ccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence 4677899999999999984332222 2234444443 4567899999998753
No 361
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.64 E-value=2.2e-07 Score=99.89 Aligned_cols=113 Identities=20% Similarity=0.207 Sum_probs=70.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH--
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG-- 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~-- 288 (793)
.+|+++|.+|+||||++|+|++....... ...+.+.........++|.++++|||||..+...
T Consensus 39 ~rIllvGktGVGKSSliNsIlG~~v~~vs---------------~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~ 103 (313)
T TIGR00991 39 LTILVMGKGGVGKSSTVNSIIGERIATVS---------------AFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYIN 103 (313)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCccccc---------------CCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHH
Confidence 48999999999999999999976321110 0111122222333456899999999999887532
Q ss_pred -HHHHHhh------ccCcEEEEEeCCC-CCCchhHHHHHHHHH-cC----CccEEEEecccCC
Q psy1760 289 -EVERILS------MVDNVLLLIDAVE-GPMPQTRFVTRKALK-LG----FKPIVVVNKIDRS 338 (793)
Q Consensus 289 -ev~~~l~------~aD~allVVDa~~-g~~~qt~~~l~~~~~-~~----ip~IvvINKiD~~ 338 (793)
+....++ ..|++|+|..... ......+.+++.+.. +| .+.||++|+.|..
T Consensus 104 e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 104 DQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 2222232 4789999954332 233344445554443 23 3579999999965
No 362
>KOG0074|consensus
Probab=98.62 E-value=1.1e-07 Score=88.77 Aligned_cols=144 Identities=17% Similarity=0.224 Sum_probs=97.5
Q ss_pred cccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC-eEEEEecCCCcccch
Q psy1760 209 LDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-TRINIIDTPGHADFG 287 (793)
Q Consensus 209 le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~-~~i~iiDTPGh~df~ 287 (793)
.+.+|.+.|--++||||++..|... |...+.+..|..+ ..+.+.+ .++|+||..|.....
T Consensus 16 rEirilllGldnAGKTT~LKqL~sE---------------D~~hltpT~GFn~----k~v~~~g~f~LnvwDiGGqr~IR 76 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSE---------------DPRHLTPTNGFNT----KKVEYDGTFHLNVWDIGGQRGIR 76 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccC---------------ChhhccccCCcce----EEEeecCcEEEEEEecCCccccc
Confidence 3468899999999999999999654 5555555566554 5566666 899999999999999
Q ss_pred HHHHHHhhccCcEEEEEeCCCCC-Cchh-HHH---HHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccc
Q psy1760 288 GEVERILSMVDNVLLLIDAVEGP-MPQT-RFV---TRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 288 ~ev~~~l~~aD~allVVDa~~g~-~~qt-~~~---l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~ 362 (793)
+-+..+....|+.|+|||+++.- ...+ .++ +...+...+|+.++.||-|+..+-.. +++...+.-.+..+
T Consensus 77 pyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~---eeia~klnl~~lrd-- 151 (185)
T KOG0074|consen 77 PYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV---EEIALKLNLAGLRD-- 151 (185)
T ss_pred hhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch---HHHHHhcchhhhhh--
Confidence 99999999999999999987642 1111 222 22223346799999999998754221 11111111001111
Q ss_pred cCccEEEeecCCCC
Q psy1760 363 LDFPVIYTSALHGY 376 (793)
Q Consensus 363 l~~Pvi~~SA~~g~ 376 (793)
..+-+-.+||+++.
T Consensus 152 RswhIq~csals~e 165 (185)
T KOG0074|consen 152 RSWHIQECSALSLE 165 (185)
T ss_pred ceEEeeeCcccccc
Confidence 13446778999987
No 363
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.61 E-value=6.2e-09 Score=109.12 Aligned_cols=114 Identities=22% Similarity=0.201 Sum_probs=55.7
Q ss_pred EEEEecCCCcccchHHHHH------Hhh--ccCcEEEEEeCCCCCCchhHH-----HHHHHHHcCCccEEEEecccCCCC
Q psy1760 274 RINIIDTPGHADFGGEVER------ILS--MVDNVLLLIDAVEGPMPQTRF-----VTRKALKLGFKPIVVVNKIDRSNA 340 (793)
Q Consensus 274 ~i~iiDTPGh~df~~ev~~------~l~--~aD~allVVDa~~g~~~qt~~-----~l~~~~~~~ip~IvvINKiD~~~a 340 (793)
.+.|+||||+.+|-..... .+. ..=++++++|+..-..+..-. .+....++++|.|.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 7899999998765433222 222 234788999997543332221 112233579999999999999762
Q ss_pred ChhhhHhHH--------------HHHHhhhcc-cccccCc-cEEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 341 RPEWVVDAT--------------FDLFDKLCA-TEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 341 ~~~~v~~~i--------------~~~~~~l~~-~~~~l~~-Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
..+..++.. ..+...+.. -++--.+ +++++|+.++. ++..|+..|-+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~----------~~~~L~~~id~ 234 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGE----------GMEELLAAIDK 234 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTT----------THHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChH----------HHHHHHHHHHH
Confidence 211111111 000001100 0011123 68999999998 88888888754
No 364
>KOG0091|consensus
Probab=98.59 E-value=2.9e-07 Score=87.87 Aligned_cols=156 Identities=18% Similarity=0.215 Sum_probs=99.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccc--cccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKN--QNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~--~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 288 (793)
.++.++|..-+|||+|+..+... .+... ..+.-.+ -..-.|-++|.. .++.+|||+|+..|..
T Consensus 9 frlivigdstvgkssll~~ft~g--kfaelsdptvgvdf-farlie~~pg~r------------iklqlwdtagqerfrs 73 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEG--KFAELSDPTVGVDF-FARLIELRPGYR------------IKLQLWDTAGQERFRS 73 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcC--cccccCCCccchHH-HHHHHhcCCCcE------------EEEEEeeccchHHHHH
Confidence 46778999999999999988633 22111 1111000 011234444432 5789999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCC-CchhHHHHHHHHH-cCCc----cEEEEecccCCCCChhhhHhHHHHHHhhhcccccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK-LGFK----PIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~-~~ip----~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~ 362 (793)
-..++.+.+=++++|.|.++.- ..+...++..|.. .+-| ..+|..|.|+...+ .-..++.+.+-+..+
T Consensus 74 itksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqR-qVt~EEaEklAa~hg----- 147 (213)
T KOG0091|consen 74 ITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQR-QVTAEEAEKLAASHG----- 147 (213)
T ss_pred HHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhc-cccHHHHHHHHHhcC-----
Confidence 9999999999999999988643 2333334444432 2322 25678999998654 222233333333333
Q ss_pred cCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 363 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 363 l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.-++.+||++|. |+++-++.|.+.+
T Consensus 148 --M~FVETSak~g~----------NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 148 --MAFVETSAKNGC----------NVEEAFDMLAQEI 172 (213)
T ss_pred --ceEEEecccCCC----------cHHHHHHHHHHHH
Confidence 347999999998 7777777765544
No 365
>KOG0077|consensus
Probab=98.56 E-value=1.6e-07 Score=90.04 Aligned_cols=112 Identities=20% Similarity=0.221 Sum_probs=82.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
..+.+.|--|+|||||+..|-...-.. . -=|..+....+.+.+.+++-+|..||..-..-+
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl~q----h---------------vPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~w 81 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRLGQ----H---------------VPTLHPTSEELSIGGMTFTTFDLGGHLQARRVW 81 (193)
T ss_pred ceEEEEeecCCchhhHHHHHccccccc----c---------------CCCcCCChHHheecCceEEEEccccHHHHHHHH
Confidence 578899999999999998874321100 0 014445556677889999999999998877777
Q ss_pred HHHhhccCcEEEEEeCCCCC-CchhHHHHHHHH----HcCCccEEEEecccCCCCC
Q psy1760 291 ERILSMVDNVLLLIDAVEGP-MPQTRFVTRKAL----KLGFKPIVVVNKIDRSNAR 341 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~----~~~ip~IvvINKiD~~~a~ 341 (793)
...+..+|+++++|||.+.- ....+..+..+. -..+|+++..||+|++.+-
T Consensus 82 kdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 82 KDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred HHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 78899999999999998642 223333333332 2578999999999999875
No 366
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.56 E-value=2.1e-07 Score=95.14 Aligned_cols=105 Identities=16% Similarity=0.179 Sum_probs=63.7
Q ss_pred CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHH
Q psy1760 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFD 351 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~ 351 (793)
+....+|+|.|..-. .... -..+|.+|.|+|+.++...+.. ........-++++||+|+.+.. ...++.+.+
T Consensus 91 ~~D~iiIEt~G~~l~-~~~~--~~l~~~~i~vvD~~~~~~~~~~----~~~qi~~ad~~~~~k~d~~~~~-~~~~~~~~~ 162 (199)
T TIGR00101 91 PLEMVFIESGGDNLS-ATFS--PELADLTIFVIDVAAGDKIPRK----GGPGITRSDLLVINKIDLAPMV-GADLGVMER 162 (199)
T ss_pred CCCEEEEECCCCCcc-cccc--hhhhCcEEEEEEcchhhhhhhh----hHhHhhhccEEEEEhhhccccc-cccHHHHHH
Confidence 456789999993211 0011 1236899999999886542211 1112222338999999997421 111222233
Q ss_pred HHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 352 LFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 352 ~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.+..+.. ..|++++||++|+ |+++++++|.++.
T Consensus 163 ~~~~~~~-----~~~i~~~Sa~~g~----------gi~el~~~i~~~~ 195 (199)
T TIGR00101 163 DAKKMRG-----EKPFIFTNLKTKE----------GLDTVIDWIEHYA 195 (199)
T ss_pred HHHHhCC-----CCCEEEEECCCCC----------CHHHHHHHHHhhc
Confidence 3333221 4689999999998 9999999997654
No 367
>KOG0410|consensus
Probab=98.53 E-value=1.9e-07 Score=98.45 Aligned_cols=146 Identities=25% Similarity=0.233 Sum_probs=97.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee-cCeEEEEecCCCccc----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGHAD---- 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~-~~~~i~iiDTPGh~d---- 285 (793)
.-|+++|..|+|||||+++|... ...++.+- --|.++....... .|..+.+.||-|+..
T Consensus 179 pviavVGYTNaGKsTLikaLT~A-al~p~drL---------------FATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~ 242 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTKA-ALYPNDRL---------------FATLDPTLHSAHLPSGNFVLLTDTVGFISDLPI 242 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHhh-hcCccchh---------------heeccchhhhccCCCCcEEEEeechhhhhhCcH
Confidence 46899999999999999999843 22222111 1133333222222 467889999999642
Q ss_pred -----chHHHHHHhhccCcEEEEEeCCCCC-CchhHHHHHHHHHcCCc-------cEEEEecccCCCCChhhhHhHHHHH
Q psy1760 286 -----FGGEVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALKLGFK-------PIVVVNKIDRSNARPEWVVDATFDL 352 (793)
Q Consensus 286 -----f~~ev~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~~~ip-------~IvvINKiD~~~a~~~~v~~~i~~~ 352 (793)
|.... .-...+|.+|.|+|.+++. ..|-..++..+...++| +|=|-||+|......+.
T Consensus 243 ~LvaAF~ATL-eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~-------- 313 (410)
T KOG0410|consen 243 QLVAAFQATL-EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE-------- 313 (410)
T ss_pred HHHHHHHHHH-HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc--------
Confidence 32222 2256789999999999864 45666788888888986 24467888875432210
Q ss_pred HhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 353 FDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 353 ~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+. .-.+++||++|. |+++|++++-..+..
T Consensus 314 --------E~--n~~v~isaltgd----------gl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 314 --------EK--NLDVGISALTGD----------GLEELLKAEETKVAS 342 (410)
T ss_pred --------cc--CCccccccccCc----------cHHHHHHHHHHHhhh
Confidence 00 115789999998 999999998665543
No 368
>KOG0097|consensus
Probab=98.51 E-value=4.2e-07 Score=84.44 Aligned_cols=145 Identities=15% Similarity=0.160 Sum_probs=92.3
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
...|+|.-|+|||.|+..+..+..... .+ ..-|+........+.-...++.||||+|+..|..-..
T Consensus 13 kyiiigdmgvgkscllhqftekkfmad------------cp--htigvefgtriievsgqkiklqiwdtagqerfravtr 78 (215)
T KOG0097|consen 13 KYIIIGDMGVGKSCLLHQFTEKKFMAD------------CP--HTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTR 78 (215)
T ss_pred EEEEEccccccHHHHHHHHHHHHHhhc------------CC--cccceecceeEEEecCcEEEEEEeecccHHHHHHHHH
Confidence 557899999999999998875522110 00 0012222222234444457889999999999999999
Q ss_pred HHhhccCcEEEEEeCCCCCCc-hhHHHHHHHHHcCCc---cEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 292 RILSMVDNVLLLIDAVEGPMP-QTRFVTRKALKLGFK---PIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~~~ip---~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
++.+.+-++++|.|.+..... +...++..++.+--| ++++.||.|+...+ +-..++.+++-.+- ..-+
T Consensus 79 syyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qr-dv~yeeak~faeen-------gl~f 150 (215)
T KOG0097|consen 79 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQR-DVTYEEAKEFAEEN-------GLMF 150 (215)
T ss_pred HHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcc-cCcHHHHHHHHhhc-------CeEE
Confidence 999999999999998764322 222344445544334 35677999997653 22333333332221 2347
Q ss_pred EEeecCCCCcc
Q psy1760 368 IYTSALHGYAN 378 (793)
Q Consensus 368 i~~SA~~g~~~ 378 (793)
+.+||++|.++
T Consensus 151 le~saktg~nv 161 (215)
T KOG0097|consen 151 LEASAKTGQNV 161 (215)
T ss_pred EEecccccCcH
Confidence 89999999843
No 369
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=1.7e-06 Score=96.28 Aligned_cols=140 Identities=23% Similarity=0.234 Sum_probs=96.6
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
-++++|+||.|||||+..|...... ....+...-||+ +.-+.++|+|+.+|. | ...+.
T Consensus 71 IvavvGPpGtGKsTLirSlVrr~tk-------------~ti~~i~GPiTv------vsgK~RRiTflEcp~--D-l~~mi 128 (1077)
T COG5192 71 IVAVVGPPGTGKSTLIRSLVRRFTK-------------QTIDEIRGPITV------VSGKTRRITFLECPS--D-LHQMI 128 (1077)
T ss_pred EEEeecCCCCChhHHHHHHHHHHHH-------------hhhhccCCceEE------eecceeEEEEEeChH--H-HHHHH
Confidence 5789999999999999999865211 111111112332 334567899999993 3 35567
Q ss_pred HHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccE-EEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEe
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI-VVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYT 370 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~I-vvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~ 370 (793)
.....||++||+||++-|..-.|.+++..+...|.|.+ -|++..|+... ...+.++...++.-...+--...-.|+.
T Consensus 129 DvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~--~stLr~~KKrlkhRfWtEiyqGaKlFyl 206 (1077)
T COG5192 129 DVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKN--PSTLRSIKKRLKHRFWTEIYQGAKLFYL 206 (1077)
T ss_pred hHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccC--hHHHHHHHHHHhhhHHHHHcCCceEEEe
Confidence 78899999999999999999999999999999999985 58899998653 2344444444433211111113347888
Q ss_pred ecCCC
Q psy1760 371 SALHG 375 (793)
Q Consensus 371 SA~~g 375 (793)
|...+
T Consensus 207 sgV~n 211 (1077)
T COG5192 207 SGVEN 211 (1077)
T ss_pred ccccc
Confidence 87653
No 370
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.50 E-value=5.2e-07 Score=96.40 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=84.5
Q ss_pred ceeeeecccCCcceehhhhhhccCcccccccccc---ccccchhhccccceE---Eeeee-------------eEEeecC
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA---RIMDSNEIEKERGIT---IFSKN-------------CSIEYNG 272 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~---~~~D~~~~e~erGiT---i~~~~-------------~~~~~~~ 272 (793)
.+.|+|.+|+|||||+++|+...........+.. +.-|...+. ..|+. +.... ..+...+
T Consensus 106 ~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~-~~g~pvvqi~tG~~Chl~a~mv~~Al~~L~~~~ 184 (290)
T PRK10463 106 VLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIR-ATGTPAIQVNTGKGCHLDAQMIADAAPRLPLDD 184 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHH-hcCCcEEEecCCCCCcCcHHHHHHHHHHHhhcC
Confidence 6899999999999999999876321111111110 111222111 11221 11100 0111123
Q ss_pred eEEEEecCCCc-ccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHH
Q psy1760 273 TRINIIDTPGH-ADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFD 351 (793)
Q Consensus 273 ~~i~iiDTPGh-~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~ 351 (793)
..+.||++-|. ..-. .. -+. .+.-+.|++..+|... .+++-..+..+-++++||+|+.... +.-++++.+
T Consensus 185 ~d~liIEnvGnLvcPa-~f--dlg-e~~~v~vlsV~eg~dk----plKyp~~f~~ADIVVLNKiDLl~~~-~~dle~~~~ 255 (290)
T PRK10463 185 NGILFIENVGNLVCPA-SF--DLG-EKHKVAVLSVTEGEDK----PLKYPHMFAAASLMLLNKVDLLPYL-NFDVEKCIA 255 (290)
T ss_pred CcEEEEECCCCccCCC-cc--chh-hceeEEEEECcccccc----chhccchhhcCcEEEEEhHHcCccc-HHHHHHHHH
Confidence 46778888774 1100 00 011 1234567777766321 1122233455679999999997531 112333333
Q ss_pred HHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 352 LFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 352 ~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
.+..+.. ..+|+.+||++|. |++.|+++|.+
T Consensus 256 ~lr~lnp-----~a~I~~vSA~tGe----------Gld~L~~~L~~ 286 (290)
T PRK10463 256 CAREVNP-----EIEIILISATSGE----------GMDQWLNWLET 286 (290)
T ss_pred HHHhhCC-----CCcEEEEECCCCC----------CHHHHHHHHHH
Confidence 3333322 3679999999998 99999999865
No 371
>KOG2486|consensus
Probab=98.49 E-value=2.6e-07 Score=95.81 Aligned_cols=158 Identities=22% Similarity=0.198 Sum_probs=106.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhcc-ccceEEeeeeeEEeecCeEEEEecCCCc------
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEK-ERGITIFSKNCSIEYNGTRINIIDTPGH------ 283 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~-erGiTi~~~~~~~~~~~~~i~iiDTPGh------ 283 (793)
..+++.|..|+|||+|+|.++...-. ...+. ..|-|.......+ +..+.++|.||+
T Consensus 137 pe~~~~g~SNVGKSSLln~~~r~k~~--------------~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~ 199 (320)
T KOG2486|consen 137 PELAFYGRSNVGKSSLLNDLVRVKNI--------------ADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYG 199 (320)
T ss_pred ceeeeecCCcccHHHHHhhhhhhhhh--------------hhhcCCCCccceeeeeeec---cceEEEEecCCcccccCC
Confidence 36899999999999999999865211 11222 4565654443333 678999999993
Q ss_pred ----ccchHHHHHHhh---ccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCC---hhhhHhHHHHHH
Q psy1760 284 ----ADFGGEVERILS---MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR---PEWVVDATFDLF 353 (793)
Q Consensus 284 ----~df~~ev~~~l~---~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~---~~~v~~~i~~~~ 353 (793)
.|+..-+..++- .-=.+.+++|++-++++.+...+.++.+.++|..+|+||||+...- -......+...|
T Consensus 200 ~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f 279 (320)
T KOG2486|consen 200 FELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINF 279 (320)
T ss_pred ccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeeh
Confidence 345555555542 2345778999999999999999999999999999999999985431 111222233323
Q ss_pred hhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHH
Q psy1760 354 DKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAI 395 (793)
Q Consensus 354 ~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I 395 (793)
..+....-...+|++++|+.++. |.+.|+=.+
T Consensus 280 ~~l~~~~f~~~~Pw~~~Ssvt~~----------Grd~Ll~~i 311 (320)
T KOG2486|consen 280 QGLIRGVFLVDLPWIYVSSVTSL----------GRDLLLLHI 311 (320)
T ss_pred hhccccceeccCCceeeeccccc----------Cceeeeeeh
Confidence 33333323346889999999987 666655443
No 372
>KOG1490|consensus
Probab=98.43 E-value=8.8e-07 Score=98.19 Aligned_cols=149 Identities=22% Similarity=0.280 Sum_probs=92.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH-
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE- 289 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e- 289 (793)
+.+.++|.||+||||+++.+...... +....-+|...-..++.|+-..+.++||||.-|---|
T Consensus 169 rTlllcG~PNVGKSSf~~~vtradve----------------vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEd 232 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRADDE----------------VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEED 232 (620)
T ss_pred CeEEEecCCCCCcHhhcccccccccc----------------cCCcccccchhhhhhhhhheeeeeecCCccccCcchhh
Confidence 67899999999999999888654221 1122334555666777888889999999998663322
Q ss_pred -----HHHHhhcc---CcEEEEEeCCC--CCC--chhH-HHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhh
Q psy1760 290 -----VERILSMV---DNVLLLIDAVE--GPM--PQTR-FVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 356 (793)
Q Consensus 290 -----v~~~l~~a---D~allVVDa~~--g~~--~qt~-~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l 356 (793)
+......| -+||++.|-++ |-. .|-. ++--+-+-.+.|.|+|+||+|.... +.+-++-++++..+
T Consensus 233 rN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~--edL~~~~~~ll~~~ 310 (620)
T KOG1490|consen 233 RNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRP--EDLDQKNQELLQTI 310 (620)
T ss_pred hhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCc--cccCHHHHHHHHHH
Confidence 22222222 46888999875 322 2222 1222223357889999999998542 22223333444333
Q ss_pred cccccccCccEEEeecCCCCcccc
Q psy1760 357 CATEEQLDFPVIYTSALHGYANEN 380 (793)
Q Consensus 357 ~~~~~~l~~Pvi~~SA~~g~~~~~ 380 (793)
... ..+||+..|+.+..++.+
T Consensus 311 ~~~---~~v~v~~tS~~~eegVm~ 331 (620)
T KOG1490|consen 311 IDD---GNVKVVQTSCVQEEGVMD 331 (620)
T ss_pred Hhc---cCceEEEecccchhceee
Confidence 322 147899999999875443
No 373
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.41 E-value=8.5e-07 Score=86.68 Aligned_cols=94 Identities=29% Similarity=0.358 Sum_probs=68.8
Q ss_pred HHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 288 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 288 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
.....+++.+|.+|+|+|+.++...+...+...+...+.|+++|+||+|+... . ..++...... ....|+
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~--~-~~~~~~~~~~-------~~~~~~ 73 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPK--E-VLEKWKSIKE-------SEGIPV 73 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCH--H-HHHHHHHHHH-------hCCCcE
Confidence 34455677799999999999877777766666666678999999999998532 1 1122111111 124579
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+++||+++. |++.|++.|.+.+|.
T Consensus 74 ~~iSa~~~~----------gi~~L~~~l~~~~~~ 97 (156)
T cd01859 74 VYVSAKERL----------GTKILRRTIKELAKI 97 (156)
T ss_pred EEEEccccc----------cHHHHHHHHHHHHhh
Confidence 999999998 999999999888874
No 374
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.40 E-value=3.2e-07 Score=97.94 Aligned_cols=80 Identities=21% Similarity=0.284 Sum_probs=58.7
Q ss_pred eeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCe-----------------EE
Q psy1760 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT-----------------RI 275 (793)
Q Consensus 213 IaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~-----------------~i 275 (793)
++|+|.||+|||||+|+|.+... .....+++|++.....+.+.+. .+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~----------------~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i 64 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA----------------EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATI 64 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC----------------ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEE
Confidence 57999999999999999976521 2233356677766666666543 59
Q ss_pred EEecCCCccc-------chHHHHHHhhccCcEEEEEeCCC
Q psy1760 276 NIIDTPGHAD-------FGGEVERILSMVDNVLLLIDAVE 308 (793)
Q Consensus 276 ~iiDTPGh~d-------f~~ev~~~l~~aD~allVVDa~~ 308 (793)
.++||||... .+....+.++.+|++++|||+.+
T Consensus 65 ~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 65 EFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred EEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 9999999653 22345556788999999999864
No 375
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.38 E-value=1.2e-06 Score=87.12 Aligned_cols=159 Identities=21% Similarity=0.226 Sum_probs=87.9
Q ss_pred cceeeeecccCCcceehhhhhhccCcccccccccc---ccccchhhccccceEEeeeee--------EE----------e
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA---RIMDSNEIEKERGITIFSKNC--------SI----------E 269 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~---~~~D~~~~e~erGiTi~~~~~--------~~----------~ 269 (793)
..|.+.|+||||||+|+++++.....--+..-+.. +..|...+.+..|..+....+ ++ .
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~ 93 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD 93 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence 47899999999999999999876422211111111 112222222212222111110 00 0
Q ss_pred ecCeEEEEecCCC-c-ccchHHHHHHhhccC-cEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCC---Chh
Q psy1760 270 YNGTRINIIDTPG-H-ADFGGEVERILSMVD-NVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA---RPE 343 (793)
Q Consensus 270 ~~~~~i~iiDTPG-h-~df~~ev~~~l~~aD-~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a---~~~ 343 (793)
+....+.||.+.| . .-|..+ ..| .-|+|+|.++|..-.-+-. -..-..-++||||.|+... +.+
T Consensus 94 ~~~~Dll~iEs~GNL~~~~sp~------L~d~~~v~VidvteGe~~P~K~g----P~i~~aDllVInK~DLa~~v~~dle 163 (202)
T COG0378 94 FPDLDLLFIESVGNLVCPFSPD------LGDHLRVVVIDVTEGEDIPRKGG----PGIFKADLLVINKTDLAPYVGADLE 163 (202)
T ss_pred CCcCCEEEEecCcceecccCcc------hhhceEEEEEECCCCCCCcccCC----CceeEeeEEEEehHHhHHHhCccHH
Confidence 1124677888888 1 122222 245 7899999998854221100 0000123899999999643 333
Q ss_pred hhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 344 WVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 344 ~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
...+..++. . -+.|++++|+++|. |++++++++...
T Consensus 164 vm~~da~~~----n-----p~~~ii~~n~ktg~----------G~~~~~~~i~~~ 199 (202)
T COG0378 164 VMARDAKEV----N-----PEAPIIFTNLKTGE----------GLDEWLRFIEPQ 199 (202)
T ss_pred HHHHHHHHh----C-----CCCCEEEEeCCCCc----------CHHHHHHHHHhh
Confidence 333333222 2 25789999999998 999999988644
No 376
>PTZ00258 GTP-binding protein; Provisional
Probab=98.33 E-value=6.6e-07 Score=99.70 Aligned_cols=81 Identities=20% Similarity=0.275 Sum_probs=60.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC-----------------e
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-----------------T 273 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~-----------------~ 273 (793)
..|+|+|.||+|||||+|+|.+... .....+++|+.+....+.+.+ .
T Consensus 22 ~kvgIVG~PNvGKSTLfnaLt~~~~----------------~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~a 85 (390)
T PTZ00258 22 LKMGIVGLPNVGKSTTFNALCKQQV----------------PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPA 85 (390)
T ss_pred cEEEEECCCCCChHHHHHHHhcCcc----------------cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCC
Confidence 3799999999999999999965421 223345777777777776653 3
Q ss_pred EEEEecCCCccc-------chHHHHHHhhccCcEEEEEeCC
Q psy1760 274 RINIIDTPGHAD-------FGGEVERILSMVDNVLLLIDAV 307 (793)
Q Consensus 274 ~i~iiDTPGh~d-------f~~ev~~~l~~aD~allVVDa~ 307 (793)
.+.++||||... ......+.++.+|++++|||+.
T Consensus 86 qi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 86 QLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 489999999643 3334556688999999999985
No 377
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.33 E-value=1.4e-06 Score=89.95 Aligned_cols=114 Identities=25% Similarity=0.298 Sum_probs=71.1
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccch----
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG---- 287 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~---- 287 (793)
+|.++|..|+||||++|.|++........ .....|.........++|..+++|||||..|..
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~--------------~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~ 67 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGS--------------SAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDE 67 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--T--------------TTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeecc--------------ccCCcccccceeeeeecceEEEEEeCCCCCCCcccHH
Confidence 68999999999999999998763211100 011233334445557899999999999976532
Q ss_pred ---HHHHHHh----hccCcEEEEEeCCCCCCchhHHHHHHHHH-cCC----ccEEEEecccCCCC
Q psy1760 288 ---GEVERIL----SMVDNVLLLIDAVEGPMPQTRFVTRKALK-LGF----KPIVVVNKIDRSNA 340 (793)
Q Consensus 288 ---~ev~~~l----~~aD~allVVDa~~g~~~qt~~~l~~~~~-~~i----p~IvvINKiD~~~a 340 (793)
.++.+.+ ...+++|||++.. ......+..++.+.. +|- ..||+++..|....
T Consensus 68 ~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~ 131 (212)
T PF04548_consen 68 EIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED 131 (212)
T ss_dssp HHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT
T ss_pred HHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc
Confidence 2222222 3468999999988 666666666666553 343 35888898887654
No 378
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.32 E-value=1.8e-06 Score=92.76 Aligned_cols=122 Identities=25% Similarity=0.342 Sum_probs=73.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.||.++|..|.|||||+|.|+......... ..+.......+..++......+.-++ ..++++||||+.|...
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~ 78 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDS------SIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNID 78 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSST
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccc------cccccccccccccceeeEEEEeccCCcceEEEEEeCCCcccccc
Confidence 589999999999999999998753322110 00111112223344444444444444 4688999999876432
Q ss_pred H------H--------HHHh-------------hccCcEEEEEeCC-CCCCchhHHHHHHHHHcCCccEEEEecccCCC
Q psy1760 289 E------V--------ERIL-------------SMVDNVLLLIDAV-EGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN 339 (793)
Q Consensus 289 e------v--------~~~l-------------~~aD~allVVDa~-~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~ 339 (793)
. + ..++ ..+|+||++++++ +++.+...+.++.+.. .+++|.||.|.|...
T Consensus 79 n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 79 NSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKADTLT 156 (281)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTGGGS-
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEecccccC
Confidence 2 1 1111 3369999999986 6788888887777665 478899999999865
No 379
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.28 E-value=6.3e-06 Score=95.51 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=71.3
Q ss_pred cccccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccc
Q psy1760 207 LTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 286 (793)
Q Consensus 207 f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 286 (793)
.....+|+++|.+|+||||++|.|++...... .....++|. .......+++..+++|||||..+.
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~v--------------ss~~~~TTr-~~ei~~~idG~~L~VIDTPGL~dt 179 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFST--------------DAFGMGTTS-VQEIEGLVQGVKIRVIDTPGLKSS 179 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccc--------------cCCCCCceE-EEEEEEEECCceEEEEECCCCCcc
Confidence 33346899999999999999999987632110 011123333 333444567899999999998764
Q ss_pred h------HHH----HHHhh--ccCcEEEEEeCCCCCC-chhHHHHHHHHH-cCC----ccEEEEecccCCC
Q psy1760 287 G------GEV----ERILS--MVDNVLLLIDAVEGPM-PQTRFVTRKALK-LGF----KPIVVVNKIDRSN 339 (793)
Q Consensus 287 ~------~ev----~~~l~--~aD~allVVDa~~g~~-~qt~~~l~~~~~-~~i----p~IvvINKiD~~~ 339 (793)
. .++ .+.+. .+|++|+|......-. ......++.+.+ +|- ..|||++..|...
T Consensus 180 ~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 180 ASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred ccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 2 122 22333 3688888876542211 123334444432 332 3589999999864
No 380
>KOG4252|consensus
Probab=98.23 E-value=2.3e-07 Score=89.67 Aligned_cols=155 Identities=19% Similarity=0.243 Sum_probs=97.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
..+.|+|.-++||||++.+.++. .+.+.-. +.-|+........+...+..+.+|||+|..+|..-.
T Consensus 21 iK~vivGng~VGKssmiqryCkg--ifTkdyk------------ktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaIt 86 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCKG--IFTKDYK------------KTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAIT 86 (246)
T ss_pred EEEEEECCCccchHHHHHHHhcc--ccccccc------------cccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHH
Confidence 46789999999999999999743 2222100 000111111112233345678899999999999888
Q ss_pred HHHhhccCcEEEEEeCCCCC-CchhHHHHHHHHH--cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 291 ERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK--LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~--~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
..+.+.|.+.+||++.++.. ...+.++.++... ..+|.++|-||||+.+... -...++..+.+.+. ...
T Consensus 87 kAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~-~~~~evE~lak~l~-------~Rl 158 (246)
T KOG4252|consen 87 KAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQ-MDKGEVEGLAKKLH-------KRL 158 (246)
T ss_pred HHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhh-cchHHHHHHHHHhh-------hhh
Confidence 89999999999999988753 2344444444432 4789999999999975321 11122222222222 235
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
+.+|++... |+...|..|.+
T Consensus 159 yRtSvked~----------NV~~vF~YLae 178 (246)
T KOG4252|consen 159 YRTSVKEDF----------NVMHVFAYLAE 178 (246)
T ss_pred hhhhhhhhh----------hhHHHHHHHHH
Confidence 778999887 66556655544
No 381
>KOG1486|consensus
Probab=98.18 E-value=6.6e-06 Score=84.05 Aligned_cols=84 Identities=26% Similarity=0.425 Sum_probs=63.5
Q ss_pred ccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCccc----
Q psy1760 210 DKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD---- 285 (793)
Q Consensus 210 e~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d---- 285 (793)
+.+|+++|.|.+|||||+..+...... .....-+|.......+.|+|..|.++|.||...
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~Se----------------aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsq 125 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSE----------------AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQ 125 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhh----------------hhceeeeEEEeecceEEecCceEEEecCccccccccc
Confidence 358999999999999999988643111 111123567777788999999999999999754
Q ss_pred ---chHHHHHHhhccCcEEEEEeCCCC
Q psy1760 286 ---FGGEVERILSMVDNVLLLIDAVEG 309 (793)
Q Consensus 286 ---f~~ev~~~l~~aD~allVVDa~~g 309 (793)
-+..+....+.||.++.|.||+..
T Consensus 126 gkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 126 GKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred CCCCCceEEEEeecccEEEEEecCCcc
Confidence 234455667889999999999864
No 382
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.15 E-value=1.4e-05 Score=69.95 Aligned_cols=77 Identities=25% Similarity=0.299 Sum_probs=63.8
Q ss_pred EEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCC-CCceeEeEEEEeecCceEEecccCCCcEEEEe--cccee
Q psy1760 412 LQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDK-PNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GIEEI 488 (793)
Q Consensus 412 ~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~-~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--gl~~i 488 (793)
+.|.+++.....|.++.+||.+|+|++|+.+.++|. ++ ....+|.+|..+. .++++|.+|+-|.|. +++++
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~--~~~~~~g~i~sl~~~~----~~v~~a~~G~ecgi~l~~~~d~ 76 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRN--GEVIYEGKISSLKRFK----DDVKEVKKGYECGITLENFNDI 76 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcC--CCEEEEEEEEEEEEcC----cccCEECCCCEEEEEEeCcccC
Confidence 456667766677899999999999999999999987 32 1356899998664 789999999999874 77899
Q ss_pred ecCCeE
Q psy1760 489 CIGSTI 494 (793)
Q Consensus 489 ~iGdtl 494 (793)
..||+|
T Consensus 77 ~~Gdvi 82 (84)
T cd03692 77 KVGDII 82 (84)
T ss_pred CCCCEE
Confidence 999987
No 383
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=1.3e-05 Score=87.42 Aligned_cols=88 Identities=18% Similarity=0.378 Sum_probs=54.5
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEe-----------ecCeEEEEecC
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE-----------YNGTRINIIDT 280 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~-----------~~~~~i~iiDT 280 (793)
.++|+|.||+|||||.|+|.......... .....+...|+..-.. .++. +--..+.|+|.
T Consensus 4 ~~GIVGlPNVGKSTlFnAlT~~~a~~aNY--------PF~TIePN~Giv~v~d-~rl~~L~~~~~c~~k~~~~~ve~vDI 74 (372)
T COG0012 4 KIGIVGLPNVGKSTLFNALTKAGAEIANY--------PFCTIEPNVGVVYVPD-CRLDELAEIVKCPPKIRPAPVEFVDI 74 (372)
T ss_pred eeEEecCCCCcHHHHHHHHHcCCccccCC--------CcccccCCeeEEecCc-hHHHHHHHhcCCCCcEEeeeeEEEEe
Confidence 68999999999999999998653211110 1111222222221110 0000 11246889999
Q ss_pred CCccc-------chHHHHHHhhccCcEEEEEeCCC
Q psy1760 281 PGHAD-------FGGEVERILSMVDNVLLLIDAVE 308 (793)
Q Consensus 281 PGh~d-------f~~ev~~~l~~aD~allVVDa~~ 308 (793)
+|... .+.....-++.+|+++.|||+.+
T Consensus 75 AGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 75 AGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred cccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 99632 45556667899999999999984
No 384
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.10 E-value=1.4e-05 Score=86.64 Aligned_cols=125 Identities=26% Similarity=0.321 Sum_probs=84.7
Q ss_pred ccccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCe--EEEEecCCCccc
Q psy1760 208 TLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT--RINIIDTPGHAD 285 (793)
Q Consensus 208 ~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~--~i~iiDTPGh~d 285 (793)
..+.+|.++|..|.||||++|.|+.....-.. .+.+.......+++.+......+.-++. .+++|||||..|
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~------~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD 94 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDET------EIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGD 94 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCC------CccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccc
Confidence 34469999999999999999999977221110 0001111113455666666666665654 578999999988
Q ss_pred chHHHHH--------------Hh--------------hccCcEEEEEeCC-CCCCchhHHHHHHHHHcCCccEEEEeccc
Q psy1760 286 FGGEVER--------------IL--------------SMVDNVLLLIDAV-EGPMPQTRFVTRKALKLGFKPIVVVNKID 336 (793)
Q Consensus 286 f~~ev~~--------------~l--------------~~aD~allVVDa~-~g~~~qt~~~l~~~~~~~ip~IvvINKiD 336 (793)
|..+-.. ++ ..+++||+.+.++ +|+.+...+.++.+.+ .+.+|.||-|.|
T Consensus 95 ~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD 173 (373)
T COG5019 95 FIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKAD 173 (373)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeeeccc
Confidence 7644211 11 2358899999865 7888998888877654 467788999999
Q ss_pred CCC
Q psy1760 337 RSN 339 (793)
Q Consensus 337 ~~~ 339 (793)
...
T Consensus 174 ~lT 176 (373)
T COG5019 174 TLT 176 (373)
T ss_pred cCC
Confidence 865
No 385
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.08 E-value=1.3e-05 Score=78.43 Aligned_cols=91 Identities=15% Similarity=0.110 Sum_probs=62.9
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHH--cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK--LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~--~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
+.+++..||.+++|+|+.++...+...+.+.+.. .+.|+|+|+||+|+... ++ ..+....+.+. ..+-+
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~--~~-~~~~~~~~~~~------~~~~~ 72 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT--WV-TARWVKILSKE------YPTIA 72 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH--HH-HHHHHHHHhcC------CcEEE
Confidence 4567899999999999998766666666666654 34899999999999632 22 22222222111 11225
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
+++||+++. |++.|++.|.+++
T Consensus 73 ~~iSa~~~~----------~~~~L~~~l~~~~ 94 (157)
T cd01858 73 FHASINNPF----------GKGSLIQLLRQFS 94 (157)
T ss_pred EEeeccccc----------cHHHHHHHHHHHH
Confidence 889999998 8888999986653
No 386
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=98.08 E-value=1.4e-05 Score=72.46 Aligned_cols=87 Identities=21% Similarity=0.333 Sum_probs=66.9
Q ss_pred CCCCceEEEEEEeeeC--------CCceEEEEEEeecccccCCEEEEecCC----CCC----CCceeEeEEEEeecCceE
Q psy1760 406 SNNPLQLQIISLEYSS--------YLGKIGIGRILSGRIKSLQDVVIMNGP----DDK----PNKAKINQIRVFKGLDRV 469 (793)
Q Consensus 406 ~~~p~~~~V~~~~~~~--------~~G~v~~grV~sG~lk~G~~v~~~~~~----~g~----~~~~kV~~i~~~~G~~~~ 469 (793)
.+.|+.|+|.++|... ..|.|+-|+|.+|.|++||+|.+.+.- +|+ ....+|.+|+.++ .
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~----~ 77 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAEN----N 77 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecC----c
Confidence 4689999999988776 889999999999999999999887431 111 1346788888665 8
Q ss_pred EecccCCCcEEEE-eccc------eeecCCeEeC
Q psy1760 470 LVNEALSGDIVLI-TGIE------EICIGSTICD 496 (793)
Q Consensus 470 ~v~~a~aGdIv~i-~gl~------~i~iGdtl~~ 496 (793)
++++|.||+.|+| ++|+ |..+|.+++.
T Consensus 78 ~l~~a~pGgliGvgT~Ldpsltk~D~l~GqV~g~ 111 (113)
T cd03688 78 DLQEAVPGGLIGVGTKLDPTLTKADRLVGQVVGE 111 (113)
T ss_pred cccEEeCCCeEEEccccCccccccceeeEEEeec
Confidence 9999999999999 3443 4555666554
No 387
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.08 E-value=1.1e-05 Score=80.26 Aligned_cols=100 Identities=21% Similarity=0.239 Sum_probs=69.1
Q ss_pred CCCcc-cchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcc
Q psy1760 280 TPGHA-DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA 358 (793)
Q Consensus 280 TPGh~-df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~ 358 (793)
-|||- ....++...+..||.+++|+|+.++.......++..+ .+.|.++|+||+|+... +. ..+..+.+...
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~--~~-~~~~~~~~~~~-- 74 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADP--KK-TKKWLKYFESK-- 74 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCCh--HH-HHHHHHHHHhc--
Confidence 46763 3556677789999999999999887655555544433 36789999999998632 11 22222222211
Q ss_pred cccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 359 TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 359 ~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
..+++++||+++. |++.|++.|...+|.
T Consensus 75 -----~~~vi~iSa~~~~----------gi~~L~~~l~~~l~~ 102 (171)
T cd01856 75 -----GEKVLFVNAKSGK----------GVKKLLKAAKKLLKD 102 (171)
T ss_pred -----CCeEEEEECCCcc----------cHHHHHHHHHHHHHH
Confidence 2458999999998 899999999887753
No 388
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.07 E-value=1e-05 Score=81.91 Aligned_cols=106 Identities=21% Similarity=0.107 Sum_probs=67.8
Q ss_pred CCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccc
Q psy1760 281 PGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 360 (793)
Q Consensus 281 PGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~ 360 (793)
|.+..|...+..++..+|++++|+|+.+........++ ....+.|+++|+||+|+..... ..+.+......+....
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~--~~~~~~~~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~ 94 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLR--LFGGNNPVILVGNKIDLLPKDK--NLVRIKNWLRAKAAAG 94 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHH--HhcCCCcEEEEEEchhcCCCCC--CHHHHHHHHHHHHHhh
Confidence 33444677888889999999999999875443333332 2235789999999999864321 1111222110010000
Q ss_pred ccc-CccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 361 EQL-DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 361 ~~l-~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
... ..+++++||++|+ |+++|++.|.+.+|
T Consensus 95 ~~~~~~~i~~vSA~~~~----------gi~eL~~~l~~~l~ 125 (190)
T cd01855 95 LGLKPKDVILISAKKGW----------GVEELINAIKKLAK 125 (190)
T ss_pred cCCCcccEEEEECCCCC----------CHHHHHHHHHHHhh
Confidence 011 1258999999998 99999999988876
No 389
>TIGR01213 conserved hypothetical protein TIGR01213. Members of this family show twilight-zone similarity to several predicted RNA pseudouridine synthases. All trusted members of this family are archaeal. Several eukaryotic homologs lack N-terminal homology including two CXXC motifs.
Probab=98.05 E-value=2.5e-06 Score=93.74 Aligned_cols=112 Identities=23% Similarity=0.291 Sum_probs=87.2
Q ss_pred eeeeeeccccc-ccchhc--cCCceEEEEEEEceeeccCCCcceEeeccCCCCCCHHHHHHHHHHhHh-hhcCCCccccc
Q psy1760 52 LLPLCFGEATK-FSNYLS--EADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHG-KISQIPPMYSA 127 (793)
Q Consensus 52 ~l~~~~g~~tk-~~~~~~--~~~K~Y~~~~~~g~~t~t~d~~g~~~~~~~~~~~t~~~~~~al~~~~G-~~~q~pp~~Sa 127 (793)
|-+..+.-+|| ....+. ...|+|+|.+++. .+++++++++++..|.| .|.|.+|.-++
T Consensus 254 V~v~~L~~~~~~~v~~ik~~~~~K~Y~alV~~~------------------~~v~~e~L~~~~~~l~g~~I~QrTP~RV~ 315 (388)
T TIGR01213 254 VEVEGLKFATREEVEEVKEEKHRKVYRALVEVD------------------GPVSDEDLEELCKELEGATIYQRTPLRVL 315 (388)
T ss_pred EEEEEeEEEcHHHHHHHhccCCceEEEEEEEEC------------------CCCCHHHHHHHHHhccCCEEEccCCceEE
Confidence 55555554443 122222 2469999999986 46789999999999999 79999999888
Q ss_pred ccccCcchhhhhccCcccccc--ceeEEEEEEEEEeecCCceeeEEeccchhHHHHHHHH--------HhhhhccchHHH
Q psy1760 128 LKYKGIPLYKYARSGITIKRK--LRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSED--------IGKMLGCGAHLK 197 (793)
Q Consensus 128 ~k~~g~~~y~~ar~g~~v~~~--~r~v~i~~~~~~d~~~~~~~~~~~~s~gtyIRsL~~d--------Ig~~L~~~a~l~ 197 (793)
. .|+ .|.-.||++++..+++..+.+.+.|..||||+.|++. ++..|++.+++.
T Consensus 316 h-----------------RRa~~~R~R~I~~i~~~~i~~~~~~l~v~~qaGtYIKElV~GD~GRT~PSl~~lLg~~a~i~ 378 (388)
T TIGR01213 316 H-----------------RRADLVRERRVYQVDLSGLDGNHAELIIEAEGGLYIKELVSGDGGRTRPSVSEVLGVEAVCK 378 (388)
T ss_pred E-----------------ecCCCceEEEEEEEEEEEEcCCEEEEEEEecCCCEEEEEEcCCCCCcCCcHHHHhCCCceEE
Confidence 2 333 6889999999999988889999999999999999986 788888766553
Q ss_pred H
Q psy1760 198 Y 198 (793)
Q Consensus 198 ~ 198 (793)
.
T Consensus 379 e 379 (388)
T TIGR01213 379 E 379 (388)
T ss_pred E
Confidence 3
No 390
>KOG1547|consensus
Probab=98.04 E-value=2.3e-05 Score=79.65 Aligned_cols=140 Identities=23% Similarity=0.263 Sum_probs=83.6
Q ss_pred cccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccc-eEEeeeeeEEeecCe--EEEEecCCCccc
Q psy1760 209 LDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERG-ITIFSKNCSIEYNGT--RINIIDTPGHAD 285 (793)
Q Consensus 209 le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erG-iTi~~~~~~~~~~~~--~i~iiDTPGh~d 285 (793)
.+.||.++|..|.|||||+|.|+.. ..... ...|. ..++.+. +.+.+....+.-++. ++++|||||+.|
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s-~v~~~------s~~~~-~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKS-HVSDS------SSSDN-SAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHH-HHhhc------cCCCc-ccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence 3579999999999999999999754 11111 01111 1222222 234444444555554 688999999887
Q ss_pred chHHH--------------HHHh--------------hccCcEEEEEeCC-CCCCchhHHHHHHHHHcCCccEEEEeccc
Q psy1760 286 FGGEV--------------ERIL--------------SMVDNVLLLIDAV-EGPMPQTRFVTRKALKLGFKPIVVVNKID 336 (793)
Q Consensus 286 f~~ev--------------~~~l--------------~~aD~allVVDa~-~g~~~qt~~~l~~~~~~~ip~IvvINKiD 336 (793)
+..+- +.++ ..+++|++.+.++ +...+-+.++++.+.+. +.+|-||-|.|
T Consensus 117 qInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-vNvvPVIakaD 195 (336)
T KOG1547|consen 117 QINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-VNVVPVIAKAD 195 (336)
T ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-heeeeeEeecc
Confidence 55321 1111 2357899999876 45667777777766542 45677999999
Q ss_pred CCCCC-hhhhHhHHHHHHhhhc
Q psy1760 337 RSNAR-PEWVVDATFDLFDKLC 357 (793)
Q Consensus 337 ~~~a~-~~~v~~~i~~~~~~l~ 357 (793)
...-. ..+..+.+++.|...+
T Consensus 196 tlTleEr~~FkqrI~~el~~~~ 217 (336)
T KOG1547|consen 196 TLTLEERSAFKQRIRKELEKHG 217 (336)
T ss_pred cccHHHHHHHHHHHHHHHHhcC
Confidence 75421 2233445555554433
No 391
>KOG1707|consensus
Probab=98.03 E-value=6.9e-06 Score=93.00 Aligned_cols=145 Identities=19% Similarity=0.104 Sum_probs=91.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
-+|+++|..|+|||||+-+|+....... +. .+-.-|+|- ..+.-......|+||+...+-...+
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef~~~----VP---------~rl~~i~IP---advtPe~vpt~ivD~ss~~~~~~~l 73 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEFVDA----VP---------RRLPRILIP---ADVTPENVPTSIVDTSSDSDDRLCL 73 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhcccc----cc---------ccCCccccC---CccCcCcCceEEEecccccchhHHH
Confidence 4799999999999999999987632210 00 011123332 2233345668999999877766777
Q ss_pred HHHhhccCcEEEEEeCCCC--CCchhHHHHHHHHH-----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 291 ERILSMVDNVLLLIDAVEG--PMPQTRFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g--~~~qt~~~l~~~~~-----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
...++.||.++++.+.++. +..-+.+++-..++ .++|+|+|.||+|............+..++.+...-+
T Consensus 74 ~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiE--- 150 (625)
T KOG1707|consen 74 RKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIE--- 150 (625)
T ss_pred HHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHH---
Confidence 7889999999999977652 22333445555554 3579999999999865432211112222222222111
Q ss_pred CccEEEeecCCCC
Q psy1760 364 DFPVIYTSALHGY 376 (793)
Q Consensus 364 ~~Pvi~~SA~~g~ 376 (793)
-+|.+||++-.
T Consensus 151 --tciecSA~~~~ 161 (625)
T KOG1707|consen 151 --TCIECSALTLA 161 (625)
T ss_pred --HHHhhhhhhhh
Confidence 15788999876
No 392
>KOG0448|consensus
Probab=98.03 E-value=3.8e-05 Score=88.46 Aligned_cols=161 Identities=16% Similarity=0.199 Sum_probs=94.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchh----------------------------hccccceEEe
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNE----------------------------IEKERGITIF 262 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~----------------------------~e~erGiTi~ 262 (793)
..|+|.|..++||||++|+|+++.-.....+...+-+++... +.++.. .-.
T Consensus 110 mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~-~~~ 188 (749)
T KOG0448|consen 110 MKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD-LGA 188 (749)
T ss_pred cEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc-cCc
Confidence 489999999999999999999875444333322211110000 000000 111
Q ss_pred eeeeEEeecC-------eEEEEecCCCcc---cchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCcc-EEE
Q psy1760 263 SKNCSIEYNG-------TRINIIDTPGHA---DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVV 331 (793)
Q Consensus 263 ~~~~~~~~~~-------~~i~iiDTPGh~---df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~-Ivv 331 (793)
.....+-|++ ..+.++|.||.. .+...+....-.+|..|||+.|....+-..+..+..+.+. .|. +|+
T Consensus 189 ~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-KpniFIl 267 (749)
T KOG0448|consen 189 GSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPNIFIL 267 (749)
T ss_pred ceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCcEEEE
Confidence 2233444543 268999999963 4666677778889999999999876555555566666655 555 566
Q ss_pred EecccCCCCChhhhHhHHHHHHhhhcccc--cccCccEEEeecCCC
Q psy1760 332 VNKIDRSNARPEWVVDATFDLFDKLCATE--EQLDFPVIYTSALHG 375 (793)
Q Consensus 332 INKiD~~~a~~~~v~~~i~~~~~~l~~~~--~~l~~Pvi~~SA~~g 375 (793)
.||.|..... .+..+.+.....++.... +..+ -|+++||+.-
T Consensus 268 nnkwDasase-~ec~e~V~~Qi~eL~v~~~~eA~D-rvfFVS~~e~ 311 (749)
T KOG0448|consen 268 NNKWDASASE-PECKEDVLKQIHELSVVTEKEAAD-RVFFVSAKEV 311 (749)
T ss_pred echhhhhccc-HHHHHHHHHHHHhcCcccHhhhcC-eeEEEeccch
Confidence 7888986543 333444443333332211 1112 2899997653
No 393
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.03 E-value=1.4e-05 Score=85.84 Aligned_cols=100 Identities=20% Similarity=0.259 Sum_probs=71.3
Q ss_pred CCCcc-cchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcc
Q psy1760 280 TPGHA-DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA 358 (793)
Q Consensus 280 TPGh~-df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~ 358 (793)
-|||. ....++...+..||.+|+|+||..+.......+.+.+ .+.|.|+|+||+|+... ...+...+.+..
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~~---~~~~~~~~~~~~--- 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLADP---AVTKQWLKYFEE--- 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCCH---HHHHHHHHHHHH---
Confidence 38885 4567788889999999999999876665555444444 36799999999998532 112222222222
Q ss_pred cccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 359 TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 359 ~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
...+++++||+++. |++.|++.|.+.++.
T Consensus 76 ----~~~~vi~iSa~~~~----------gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 76 ----KGIKALAINAKKGK----------GVKKIIKAAKKLLKE 104 (276)
T ss_pred ----cCCeEEEEECCCcc----------cHHHHHHHHHHHHHH
Confidence 12468999999997 899999999887754
No 394
>KOG2655|consensus
Probab=98.02 E-value=4.3e-05 Score=83.48 Aligned_cols=123 Identities=25% Similarity=0.321 Sum_probs=82.5
Q ss_pred ccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCe--EEEEecCCCcccch
Q psy1760 210 DKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT--RINIIDTPGHADFG 287 (793)
Q Consensus 210 e~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~--~i~iiDTPGh~df~ 287 (793)
+.++.++|..|.|||||+|.|+.....-. ...+.......+..++......+.-+|. .++++||||..|+.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~-------~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~v 93 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGN-------REVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAV 93 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCC-------cccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccc
Confidence 45899999999999999999987621110 1112222233334455555555555554 56789999988755
Q ss_pred HHH--------------HHHh-------------hccCcEEEEEeCC-CCCCchhHHHHHHHHHcCCccEEEEecccCCC
Q psy1760 288 GEV--------------ERIL-------------SMVDNVLLLIDAV-EGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN 339 (793)
Q Consensus 288 ~ev--------------~~~l-------------~~aD~allVVDa~-~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~ 339 (793)
.+- ..++ ..+++||+.+..+ +|+.+...+.++.+.. .+.+|-||-|.|...
T Consensus 94 dns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 94 DNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADTLT 172 (366)
T ss_pred cccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeeccccCC
Confidence 432 1111 2468999999875 6788988887776654 577889999999875
Q ss_pred C
Q psy1760 340 A 340 (793)
Q Consensus 340 a 340 (793)
.
T Consensus 173 ~ 173 (366)
T KOG2655|consen 173 K 173 (366)
T ss_pred H
Confidence 4
No 395
>KOG1954|consensus
Probab=98.00 E-value=3e-05 Score=83.27 Aligned_cols=133 Identities=26% Similarity=0.293 Sum_probs=90.6
Q ss_pred cccccceeeeecccCCcceehhhhhhccCccccccc--cc---cccccchhhccccceEEeeeee-EEe----ec-----
Q psy1760 207 LTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQN--IN---ARIMDSNEIEKERGITIFSKNC-SIE----YN----- 271 (793)
Q Consensus 207 f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~--v~---~~~~D~~~~e~erGiTi~~~~~-~~~----~~----- 271 (793)
|.-..-|.++|.-..||||+++.|+.+.-.--+.+. .. ..+|-....+..+|.+...... .|. ++
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 333346889999999999999999976422111111 11 2344444444455554322210 010 00
Q ss_pred -----------CeEEEEecCCCc-----------ccchHHHHHHhhccCcEEEEEeCCC-CCCchhHHHHHHHHHcCCcc
Q psy1760 272 -----------GTRINIIDTPGH-----------ADFGGEVERILSMVDNVLLLIDAVE-GPMPQTRFVTRKALKLGFKP 328 (793)
Q Consensus 272 -----------~~~i~iiDTPGh-----------~df~~ev~~~l~~aD~allVVDa~~-g~~~qt~~~l~~~~~~~ip~ 328 (793)
=.+|+||||||. -||.+-.+..+..||.++|++|+.. .+...+.+++..++...-.+
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edki 214 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKI 214 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCccee
Confidence 027999999995 3688888888999999999999974 56778888888888777777
Q ss_pred EEEEecccCCC
Q psy1760 329 IVVVNKIDRSN 339 (793)
Q Consensus 329 IvvINKiD~~~ 339 (793)
=||+||.|..+
T Consensus 215 RVVLNKADqVd 225 (532)
T KOG1954|consen 215 RVVLNKADQVD 225 (532)
T ss_pred EEEeccccccC
Confidence 89999999875
No 396
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.00 E-value=2.5e-05 Score=75.20 Aligned_cols=99 Identities=21% Similarity=0.172 Sum_probs=67.0
Q ss_pred HHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHc--CCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 288 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 288 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~--~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
+++.+++..+|++++|+|+.++...+...+.+.+... +.|+++|+||+|+... +...+..+.+...+ .
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~---~~~~~~~~~~~~~~-------~ 72 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTE---EQRKAWAEYFKKEG-------I 72 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCH---HHHHHHHHHHHhcC-------C
Confidence 4677889999999999999988877777777777666 8899999999998532 22333334333222 4
Q ss_pred cEEEeecCCCCcccc-cccccCCchhhHHHHH
Q psy1760 366 PVIYTSALHGYANEN-SKARQGNMIPLFEAIL 396 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~-~~~~~~gi~~Ll~~I~ 396 (793)
+++++||+++.+..- ...++.|=..|+..+.
T Consensus 73 ~ii~iSa~~~~~~~~~~G~~~vGKstlin~l~ 104 (141)
T cd01857 73 VVVFFSALKENATIGLVGYPNVGKSSLINALV 104 (141)
T ss_pred eEEEEEecCCCcEEEEECCCCCCHHHHHHHHh
Confidence 689999999863100 0112334456666664
No 397
>KOG3883|consensus
Probab=97.95 E-value=6.9e-05 Score=71.22 Aligned_cols=162 Identities=17% Similarity=0.218 Sum_probs=98.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec---CeEEEEecCCCcccch
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---GTRINIIDTPGHADFG 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~---~~~i~iiDTPGh~df~ 287 (793)
..+.++|.-++|||.++++|++-....... ...++-|. -...++.+ ...+.|.||.|..+..
T Consensus 10 ~kVvVcG~k~VGKTaileQl~yg~~~~~~e--~~pTiEDi-------------Y~~svet~rgarE~l~lyDTaGlq~~~ 74 (198)
T KOG3883|consen 10 CKVVVCGMKSVGKTAILEQLLYGNHVPGTE--LHPTIEDI-------------YVASVETDRGAREQLRLYDTAGLQGGQ 74 (198)
T ss_pred eEEEEECCccccHHHHHHHHHhccCCCCCc--cccchhhh-------------eeEeeecCCChhheEEEeecccccCch
Confidence 478999999999999999999764433211 01111111 11222221 2468899999998885
Q ss_pred HHHHH-HhhccCcEEEEEeCCCCCCchhHHHHHHHHH-----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccc
Q psy1760 288 GEVER-ILSMVDNVLLLIDAVEGPMPQTRFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 361 (793)
Q Consensus 288 ~ev~~-~l~~aD~allVVDa~~g~~~qt~~~l~~~~~-----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~ 361 (793)
.+.-+ +++.+|+.+||.|..+.-.-|-.+.+++-.. ..+|++|..||+|+.+. .++..+....... .+
T Consensus 75 ~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p--~~vd~d~A~~Wa~---rE- 148 (198)
T KOG3883|consen 75 QELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP--REVDMDVAQIWAK---RE- 148 (198)
T ss_pred hhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc--hhcCHHHHHHHHh---hh-
Confidence 56555 5788999999999887544444444443322 34688899999999642 2232222222211 11
Q ss_pred ccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCC
Q psy1760 362 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN 405 (793)
Q Consensus 362 ~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~ 405 (793)
.+-.+.++|.... .+-+.+-.+...+..|...
T Consensus 149 --kvkl~eVta~dR~----------sL~epf~~l~~rl~~pqsk 180 (198)
T KOG3883|consen 149 --KVKLWEVTAMDRP----------SLYEPFTYLASRLHQPQSK 180 (198)
T ss_pred --heeEEEEEeccch----------hhhhHHHHHHHhccCCccc
Confidence 1335677887664 5556666776666666543
No 398
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.94 E-value=1.9e-05 Score=87.68 Aligned_cols=152 Identities=20% Similarity=0.206 Sum_probs=84.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccch---hhcc------ccceEEeeeeeE-------EeecCeE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSN---EIEK------ERGITIFSKNCS-------IEYNGTR 274 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~---~~e~------erGiTi~~~~~~-------~~~~~~~ 274 (793)
..++++|++|+||||++..|............+.-...|.. ..|. ..|+........ ..+.++.
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 47899999999999999999764211100001110001111 0111 123333222111 1245778
Q ss_pred EEEecCCCccc---chHHHHHHhhccC---cEEEEEeCCCCCCchhHHHHHHHHHcCCc-------cEEEEecccCCCCC
Q psy1760 275 INIIDTPGHAD---FGGEVERILSMVD---NVLLLIDAVEGPMPQTRFVTRKALKLGFK-------PIVVVNKIDRSNAR 341 (793)
Q Consensus 275 i~iiDTPGh~d---f~~ev~~~l~~aD---~allVVDa~~g~~~qt~~~l~~~~~~~ip-------~IvvINKiD~~~a~ 341 (793)
+.||||||... +..+....+..++ -.+||++|+.+....+..++.+....+.| .=++++|+|-.. +
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~-~ 296 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS-N 296 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC-C
Confidence 99999999763 3333344444443 45999999987665555555554443332 257889999754 3
Q ss_pred hhhhHhHHHHHHhhhcccccccCccEEEeecCC
Q psy1760 342 PEWVVDATFDLFDKLCATEEQLDFPVIYTSALH 374 (793)
Q Consensus 342 ~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~ 374 (793)
+-.+++-+... ..|+.|++.=.
T Consensus 297 ~G~~l~~~~~~-----------~lPi~yvt~Gq 318 (374)
T PRK14722 297 LGGVLDTVIRY-----------KLPVHYVSTGQ 318 (374)
T ss_pred ccHHHHHHHHH-----------CcCeEEEecCC
Confidence 44444433322 46888887433
No 399
>KOG0393|consensus
Probab=97.91 E-value=4.4e-05 Score=76.95 Aligned_cols=154 Identities=16% Similarity=0.194 Sum_probs=92.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee---cCeEEEEecCCCcccch
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY---NGTRINIIDTPGHADFG 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~---~~~~i~iiDTPGh~df~ 287 (793)
..+.++|...+|||.|+..+... .++.. ...++.|.. ...+.. ..+.+.+|||+|..||.
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~--~fp~~--yvPTVFdny-------------s~~v~V~dg~~v~L~LwDTAGqedYD 67 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTN--AFPEE--YVPTVFDNY-------------SANVTVDDGKPVELGLWDTAGQEDYD 67 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccC--cCccc--ccCeEEccc-------------eEEEEecCCCEEEEeeeecCCCcccc
Confidence 46789999999999999877533 22211 111111211 112222 23457899999999996
Q ss_pred HHHHHHhhccCcEEEEEeCCCCCCch--hHHHHHHHHH--cCCccEEEEecccCCCCChhhhHhHHH-------------
Q psy1760 288 GEVERILSMVDNVLLLIDAVEGPMPQ--TRFVTRKALK--LGFKPIVVVNKIDRSNARPEWVVDATF------------- 350 (793)
Q Consensus 288 ~ev~~~l~~aD~allVVDa~~g~~~q--t~~~l~~~~~--~~ip~IvvINKiD~~~a~~~~v~~~i~------------- 350 (793)
.-..-....+|.+|++++..+..... ...++..... -+.|+|+|.+|.|+... . ..++.+.
T Consensus 68 rlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d-~-~~~~~l~~~~~~~Vt~~~g~ 145 (198)
T KOG0393|consen 68 RLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDD-P-STLEKLQRQGLEPVTYEQGL 145 (198)
T ss_pred cccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhC-H-HHHHHHHhccCCcccHHHHH
Confidence 63334677899998888866532211 2233444443 36899999999999732 1 1222222
Q ss_pred HHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 351 DLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 351 ~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.+-.++++ ...+.+||++.. |+.+.++.-+.+.
T Consensus 146 ~lA~~iga------~~y~EcSa~tq~----------~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 146 ELAKEIGA------VKYLECSALTQK----------GVKEVFDEAIRAA 178 (198)
T ss_pred HHHHHhCc------ceeeeehhhhhC----------CcHHHHHHHHHHH
Confidence 12122332 457999999987 7877777655544
No 400
>KOG1673|consensus
Probab=97.90 E-value=5e-05 Score=72.29 Aligned_cols=164 Identities=19% Similarity=0.254 Sum_probs=105.1
Q ss_pred cccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH
Q psy1760 209 LDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 288 (793)
Q Consensus 209 le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 288 (793)
++-.|+++|.+..|||||+-...+... | ...+...|+...-+...+.-....+.|||..|.++|..
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~-------------d-e~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n 84 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEY-------------D-EEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFIN 84 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchh-------------H-HHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhc
Confidence 345789999999999999977764421 1 11223345544444444444456778999999999887
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCc-hhHHHHHHHHHcCCc--cEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALKLGFK--PIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~~~ip--~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
..--+...+-++++++|-+....- .-.++.++|+..+.. +|+|.+|.|..-.-+.+...++...-.... ..++.
T Consensus 85 ~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YA---k~mnA 161 (205)
T KOG1673|consen 85 MLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYA---KVMNA 161 (205)
T ss_pred cCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHH---HHhCC
Confidence 776677777889999998865433 334677888877653 378899999743222222222221111111 12356
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
+.+++|+-... |++.++..+...+
T Consensus 162 sL~F~Sts~sI----------Nv~KIFK~vlAkl 185 (205)
T KOG1673|consen 162 SLFFCSTSHSI----------NVQKIFKIVLAKL 185 (205)
T ss_pred cEEEeeccccc----------cHHHHHHHHHHHH
Confidence 78999999887 7777777665543
No 401
>KOG3886|consensus
Probab=97.89 E-value=2.1e-05 Score=79.64 Aligned_cols=120 Identities=17% Similarity=0.235 Sum_probs=86.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC-eEEEEecCCCcccchHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-TRINIIDTPGHADFGGE 289 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~-~~i~iiDTPGh~df~~e 289 (793)
+.|.++|..|+|||++-...+....+. ..+..|-||+..+.++.+-| ..+++||..|...|..+
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~---------------D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen 69 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIAR---------------DTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMEN 69 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhh---------------hhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHH
Confidence 578899999999999987776431111 12234778888888887765 78999999999888766
Q ss_pred HHH-----HhhccCcEEEEEeCCCCCCchhHHHHHHHHH----c--CCccEEEEecccCCCCChhhh
Q psy1760 290 VER-----ILSMVDNVLLLIDAVEGPMPQTRFVTRKALK----L--GFKPIVVVNKIDRSNARPEWV 345 (793)
Q Consensus 290 v~~-----~l~~aD~allVVDa~~g~~~qt~~~l~~~~~----~--~ip~IvvINKiD~~~a~~~~v 345 (793)
..+ .++.++..++|+|+....+..+..+.+.|++ . ..++++.+.|+|+...+..+.
T Consensus 70 ~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~ 136 (295)
T KOG3886|consen 70 YLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDAREL 136 (295)
T ss_pred HHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHH
Confidence 554 4788999999999987655555555555443 2 234678899999987654433
No 402
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.89 E-value=2.8e-05 Score=84.06 Aligned_cols=102 Identities=19% Similarity=0.243 Sum_probs=71.8
Q ss_pred cCCCcc-cchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhc
Q psy1760 279 DTPGHA-DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC 357 (793)
Q Consensus 279 DTPGh~-df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~ 357 (793)
.-|||. .-..++.+.+..||.+|+|+|+..+.......+.+... +.|.|+|+||+|+.+. ...++..+.+...
T Consensus 6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~---~~~~~~~~~~~~~- 79 (287)
T PRK09563 6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADP---EVTKKWIEYFEEQ- 79 (287)
T ss_pred CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCH---HHHHHHHHHHHHc-
Confidence 358875 34566778899999999999998876655554444432 7899999999998532 2223333333211
Q ss_pred ccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 358 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 358 ~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
..+++++||+++. |++.|++.|.+.++..
T Consensus 80 ------~~~vi~vSa~~~~----------gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 80 ------GIKALAINAKKGQ----------GVKKILKAAKKLLKEK 108 (287)
T ss_pred ------CCeEEEEECCCcc----------cHHHHHHHHHHHHHHH
Confidence 2568999999987 8889999888777643
No 403
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.87 E-value=1e-05 Score=79.35 Aligned_cols=55 Identities=24% Similarity=0.336 Sum_probs=39.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH 283 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh 283 (793)
.+++++|.+|+|||||+|+|++... ......+|+|........ +..+.++||||.
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~---------------~~~~~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKV---------------CKVAPIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCc---------------eeeCCCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 4788999999999999999986522 223445677765433222 345899999994
No 404
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.87 E-value=7.2e-05 Score=81.91 Aligned_cols=150 Identities=20% Similarity=0.243 Sum_probs=79.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccc---------hhhccccceEEeeeee-------------EE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDS---------NEIEKERGITIFSKNC-------------SI 268 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~---------~~~e~erGiTi~~~~~-------------~~ 268 (793)
..++++|++|+||||++..|........ ..+.-.-.|. ......+|+.+..... ..
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g--~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQG--KKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcC--CeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4689999999999999998865422111 1111000011 0112223433322110 00
Q ss_pred eecCeEEEEecCCCcccch----HHHHHHhh--------ccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEeccc
Q psy1760 269 EYNGTRINIIDTPGHADFG----GEVERILS--------MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKID 336 (793)
Q Consensus 269 ~~~~~~i~iiDTPGh~df~----~ev~~~l~--------~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD 336 (793)
...++.+.||||||...+. .++....+ ..+..++|+||+.|..... ..+...+.--..-+++||+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~--~a~~f~~~~~~~giIlTKlD 270 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS--QAKAFHEAVGLTGIILTKLD 270 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH--HHHHHHhhCCCCEEEEECCC
Confidence 1246789999999975432 23333322 3577899999997532211 11111111123368999999
Q ss_pred CCCCChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcc
Q psy1760 337 RSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYAN 378 (793)
Q Consensus 337 ~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~ 378 (793)
.. ++...+++.... ...|+.+++ +|...
T Consensus 271 ~t-~~~G~~l~~~~~-----------~~~Pi~~v~--~Gq~~ 298 (318)
T PRK10416 271 GT-AKGGVVFAIADE-----------LGIPIKFIG--VGEGI 298 (318)
T ss_pred CC-CCccHHHHHHHH-----------HCCCEEEEe--CCCCh
Confidence 54 444444444322 257999998 66543
No 405
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.80 E-value=7.8e-05 Score=72.89 Aligned_cols=83 Identities=20% Similarity=0.101 Sum_probs=57.1
Q ss_pred CcEEEEEeCCCCCCchhHHHH-HHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEeecCCCC
Q psy1760 298 DNVLLLIDAVEGPMPQTRFVT-RKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 376 (793)
Q Consensus 298 D~allVVDa~~g~~~qt~~~l-~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~ 376 (793)
|.+|+|+|+.++.......+. ..+...+.|+|+|+||+|+... +. ..+....+... ...+++++||++|.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~--~~-~~~~~~~~~~~------~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK--EV-LRKWLAYLRHS------YPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH--HH-HHHHHHHHHhh------CCceEEEEeccCCc
Confidence 789999999887655555554 4566678999999999999542 21 11211112111 12458999999998
Q ss_pred cccccccccCCchhhHHHHHhhc
Q psy1760 377 ANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 377 ~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
|++.|++.|.+.+
T Consensus 72 ----------gi~~L~~~i~~~~ 84 (155)
T cd01849 72 ----------GIEKKESAFTKQT 84 (155)
T ss_pred ----------ChhhHHHHHHHHh
Confidence 8889999887654
No 406
>KOG1487|consensus
Probab=97.79 E-value=2e-05 Score=81.01 Aligned_cols=82 Identities=21% Similarity=0.395 Sum_probs=62.3
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCccc------
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD------ 285 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d------ 285 (793)
.+.++|-|.+|||||+..|.+... ++...-++|.........|++-++.+.|.||..+
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s----------------~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgk 124 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFS----------------EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGK 124 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCC----------------ccccccceeEEEecceEeccccceeeecCcchhcccccCC
Confidence 678999999999999999965421 1222235666666777889999999999999854
Q ss_pred -chHHHHHHhhccCcEEEEEeCCCC
Q psy1760 286 -FGGEVERILSMVDNVLLLIDAVEG 309 (793)
Q Consensus 286 -f~~ev~~~l~~aD~allVVDa~~g 309 (793)
-+..+....+.|..+++|.|+...
T Consensus 125 grg~qviavartcnli~~vld~~kp 149 (358)
T KOG1487|consen 125 GRGKQVIAVARTCNLIFIVLDVLKP 149 (358)
T ss_pred CCccEEEEEeecccEEEEEeeccCc
Confidence 334566667889999999998753
No 407
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.78 E-value=1.5e-05 Score=79.46 Aligned_cols=55 Identities=20% Similarity=0.480 Sum_probs=41.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH 283 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh 283 (793)
..++++|.||+|||||+|+|++.. .......+|+|.......+ +..+.++||||.
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~---------------~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSR---------------ACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcc---------------cceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 478999999999999999998652 2233455788876544433 346899999994
No 408
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.77 E-value=3.3e-05 Score=75.58 Aligned_cols=56 Identities=23% Similarity=0.447 Sum_probs=42.0
Q ss_pred ccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCc
Q psy1760 210 DKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH 283 (793)
Q Consensus 210 e~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh 283 (793)
..+++++|.+|+|||||+|+|++... ......+|+|.......+ +..++++||||.
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~~~---------------~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLK---------------LKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHcccc---------------ccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 35799999999999999999986521 123445677877665544 356999999994
No 409
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.74 E-value=0.00011 Score=82.97 Aligned_cols=124 Identities=17% Similarity=0.157 Sum_probs=66.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccc---------hhhccccceEEeeeeeE-------------E
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDS---------NEIEKERGITIFSKNCS-------------I 268 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~---------~~~e~erGiTi~~~~~~-------------~ 268 (793)
.-|+++|.+|+||||++..|......... .+.-.-.|. .......++.+...... .
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~--kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGF--KPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCC--CEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 46899999999999999988643211000 110000011 01122233333211110 0
Q ss_pred eecCeEEEEecCCCcccch----HHHHHHh--hccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCC
Q psy1760 269 EYNGTRINIIDTPGHADFG----GEVERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS 338 (793)
Q Consensus 269 ~~~~~~i~iiDTPGh~df~----~ev~~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~ 338 (793)
.-.++.+.||||||..... .++.... ...|-++||+||..|-.. ....+...+.--+.-+++||+|..
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 1136789999999965433 3333332 235789999999876332 122222222222457899999985
No 410
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.74 E-value=0.00013 Score=72.63 Aligned_cols=67 Identities=27% Similarity=0.392 Sum_probs=41.5
Q ss_pred cCeEEEEecCCCcccch----HHHHHHh--hccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCC
Q psy1760 271 NGTRINIIDTPGHADFG----GEVERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN 339 (793)
Q Consensus 271 ~~~~i~iiDTPGh~df~----~ev~~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~ 339 (793)
.++.+.|+||||...+. .++.... ...|.+++|+|+..+.. ............++ .-+++||+|...
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~-~~~~~~~~~~~~~~-~~viltk~D~~~ 153 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD-AVNQAKAFNEALGI-TGVILTKLDGDA 153 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH-HHHHHHHHHhhCCC-CEEEEECCcCCC
Confidence 36679999999986443 3222222 24899999999965422 11233333334453 467889999864
No 411
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.72 E-value=4.3e-05 Score=77.28 Aligned_cols=86 Identities=24% Similarity=0.290 Sum_probs=55.0
Q ss_pred EeccchhHHHHHHHHHhhhhccchHHHHHHhhcccccccccceeeeecccCCcceehhhhhhccCccccccccccccccc
Q psy1760 171 IHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDS 250 (793)
Q Consensus 171 ~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~ 250 (793)
+.+..|.-+..|...|.+.+. ...+++++|.+|+|||||+|+|+.......+. ...
T Consensus 105 vSA~~~~gi~eL~~~l~~~l~-----------------~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~-------~~~ 160 (190)
T cd01855 105 ISAKKGWGVEELINAIKKLAK-----------------KGGDVYVVGATNVGKSTLINALLKKDNGKKKL-------KDL 160 (190)
T ss_pred EECCCCCCHHHHHHHHHHHhh-----------------cCCcEEEEcCCCCCHHHHHHHHHHhccccccc-------ccc
Confidence 444555556677666654432 12478999999999999999998753211100 001
Q ss_pred hhhccccceEEeeeeeEEeecCeEEEEecCCCc
Q psy1760 251 NEIEKERGITIFSKNCSIEYNGTRINIIDTPGH 283 (793)
Q Consensus 251 ~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh 283 (793)
......+|+|+......+.. .+.|+||||.
T Consensus 161 ~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 161 LTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred cccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 22345568898876555532 5799999995
No 412
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.71 E-value=7.9e-05 Score=80.17 Aligned_cols=91 Identities=21% Similarity=0.265 Sum_probs=54.7
Q ss_pred EeccchhHHHHHHHHHhhhhccchHHHHHHhhcccccccccceeeeecccCCcceehhhhhhccCccccccccccccccc
Q psy1760 171 IHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDS 250 (793)
Q Consensus 171 ~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~ 250 (793)
+.+.+|.-+..|...+.+.+... .-++...+......+++++|.+|+|||||+|+|.+...
T Consensus 83 iSa~~~~gi~~L~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~--------------- 143 (276)
T TIGR03596 83 INAKKGKGVKKIIKAAKKLLKEK----NEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKV--------------- 143 (276)
T ss_pred EECCCcccHHHHHHHHHHHHHHh----hhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCc---------------
Confidence 44556666677766665544211 11111112112234799999999999999999986521
Q ss_pred hhhccccceEEeeeeeEEeecCeEEEEecCCCc
Q psy1760 251 NEIEKERGITIFSKNCSIEYNGTRINIIDTPGH 283 (793)
Q Consensus 251 ~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh 283 (793)
......+|+|..... +.++ ..+.++||||.
T Consensus 144 ~~~~~~~g~T~~~~~--~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 144 AKVGNRPGVTKGQQW--IKLS-DGLELLDTPGI 173 (276)
T ss_pred cccCCCCCeecceEE--EEeC-CCEEEEECCCc
Confidence 122334677776543 3332 36899999997
No 413
>KOG0096|consensus
Probab=97.68 E-value=9.9e-05 Score=72.77 Aligned_cols=144 Identities=16% Similarity=0.174 Sum_probs=90.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
..+.++|..+.||||++++.+.. .+.... ...-|..+......-..+..+++.|||.|...|.+.-
T Consensus 11 fklvlvGdgg~gKtt~vkr~ltg--eFe~~y------------~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglr 76 (216)
T KOG0096|consen 11 FKLVLVGDGGTGKTTFVKRHLTG--EFEKTY------------PATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLR 76 (216)
T ss_pred EEEEEecCCcccccchhhhhhcc--cceecc------------cCcceeEEeeeeeecccCcEEEEeeecccceeecccc
Confidence 57889999999999999998733 222211 1112333333333333334889999999999998877
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHH--HHHH-HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVT--RKAL-KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l--~~~~-~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
..+.-.+.+|++++|......-+....| ..++ ..++|++++.||.|..... +...--. -....++..
T Consensus 77 dgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~---~k~k~v~-------~~rkknl~y 146 (216)
T KOG0096|consen 77 DGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARK---VKAKPVS-------FHRKKNLQY 146 (216)
T ss_pred cccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccc---cccccce-------eeeccccee
Confidence 6666778899999998865544333222 2222 2358999999999976432 0000000 011224557
Q ss_pred EEeecCCCCcc
Q psy1760 368 IYTSALHGYAN 378 (793)
Q Consensus 368 i~~SA~~g~~~ 378 (793)
+.+||+.+.|.
T Consensus 147 ~~iSaksn~Nf 157 (216)
T KOG0096|consen 147 YEISAKSNYNF 157 (216)
T ss_pred EEeeccccccc
Confidence 99999998743
No 414
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.66 E-value=9.8e-05 Score=71.86 Aligned_cols=59 Identities=29% Similarity=0.321 Sum_probs=42.0
Q ss_pred cCeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEeccc
Q psy1760 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKID 336 (793)
Q Consensus 271 ~~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD 336 (793)
.++.+.||||||.. ......+..||.+|+|+.... .....+.+...+..--+++|||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~----~D~y~~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGA----GDDIQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCc----hhHHHHhhhhHhhhcCEEEEeCCC
Confidence 36789999999964 334468899999999997762 222333444444555699999998
No 415
>PRK14974 cell division protein FtsY; Provisional
Probab=97.64 E-value=0.00027 Score=77.76 Aligned_cols=89 Identities=20% Similarity=0.364 Sum_probs=53.5
Q ss_pred cCeEEEEecCCCccc----chHHHHHHh--hccCcEEEEEeCCCCCCchhHHHHHHHHHc--CCc-cEEEEecccCCCCC
Q psy1760 271 NGTRINIIDTPGHAD----FGGEVERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKL--GFK-PIVVVNKIDRSNAR 341 (793)
Q Consensus 271 ~~~~i~iiDTPGh~d----f~~ev~~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~--~ip-~IvvINKiD~~~a~ 341 (793)
.++.+.||||||... +..++.... ...|..+||+||..|- ..+..+..+ .++ .-+++||+|... +
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~-----d~~~~a~~f~~~~~~~giIlTKlD~~~-~ 294 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN-----DAVEQAREFNEAVGIDGVILTKVDADA-K 294 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch-----hHHHHHHHHHhcCCCCEEEEeeecCCC-C
Confidence 356799999999753 333443332 2468999999997752 122222222 122 378899999853 3
Q ss_pred hhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcc
Q psy1760 342 PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYAN 378 (793)
Q Consensus 342 ~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~ 378 (793)
....++-... ...|+.|++ +|.++
T Consensus 295 ~G~~ls~~~~-----------~~~Pi~~i~--~Gq~v 318 (336)
T PRK14974 295 GGAALSIAYV-----------IGKPILFLG--VGQGY 318 (336)
T ss_pred ccHHHHHHHH-----------HCcCEEEEe--CCCCh
Confidence 4444443322 257899998 56643
No 416
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.00042 Score=79.61 Aligned_cols=149 Identities=19% Similarity=0.229 Sum_probs=75.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchh---------hccccceEEeeeeeE-------EeecCeE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNE---------IEKERGITIFSKNCS-------IEYNGTR 274 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~---------~e~erGiTi~~~~~~-------~~~~~~~ 274 (793)
..++|+|..|+||||++..|............+.-...|... ..+.-|+.+...... -.+.++.
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~D 430 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYK 430 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccCC
Confidence 578999999999999998887532111000011100011100 011122222111100 0124678
Q ss_pred EEEecCCCcccchHHHHH---Hhh--ccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHH
Q psy1760 275 INIIDTPGHADFGGEVER---ILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDAT 349 (793)
Q Consensus 275 i~iiDTPGh~df~~ev~~---~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i 349 (793)
+.||||||.......... .+. .....+||+++..+.... ...++..... .+.-+++||+|... ++..+++-+
T Consensus 431 LVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl-~eii~~f~~~-~~~gvILTKlDEt~-~lG~aLsv~ 507 (559)
T PRK12727 431 LVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDL-DEVVRRFAHA-KPQGVVLTKLDETG-RFGSALSVV 507 (559)
T ss_pred EEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHH-HHHHHHHHhh-CCeEEEEecCcCcc-chhHHHHHH
Confidence 999999997543322111 111 134578888887643222 2233333332 34578999999843 344444433
Q ss_pred HHHHhhhcccccccCccEEEeecC
Q psy1760 350 FDLFDKLCATEEQLDFPVIYTSAL 373 (793)
Q Consensus 350 ~~~~~~l~~~~~~l~~Pvi~~SA~ 373 (793)
... ..|+.|++.=
T Consensus 508 ~~~-----------~LPI~yvt~G 520 (559)
T PRK12727 508 VDH-----------QMPITWVTDG 520 (559)
T ss_pred HHh-----------CCCEEEEeCC
Confidence 221 4688888743
No 417
>PRK14554 putative pseudouridylate synthase; Provisional
Probab=97.59 E-value=3.3e-05 Score=86.36 Aligned_cols=114 Identities=28% Similarity=0.321 Sum_probs=86.7
Q ss_pred ceeeeeeccccc-ccchhcc--CCceEEEEEEEceeeccCCCcceEeeccCCCCCCHHHHHHHHHHhHhh-hcCCCcccc
Q psy1760 51 GLLPLCFGEATK-FSNYLSE--ADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGK-ISQIPPMYS 126 (793)
Q Consensus 51 G~l~~~~g~~tk-~~~~~~~--~~K~Y~~~~~~g~~t~t~d~~g~~~~~~~~~~~t~~~~~~al~~~~G~-~~q~pp~~S 126 (793)
+|-+..+.-++| ....+.+ ..|+|+|.+.+. .+++++++++++..|.|. |.|.+|.-.
T Consensus 286 ~V~v~~l~~~~~~~~~~ik~~~~~K~YralV~~~------------------~~v~~e~l~~~~~~l~~~~I~QrTP~RV 347 (422)
T PRK14554 286 KVEVENLRFATRKEVERIKEEKASKTYRALVESD------------------EPVSEEELEKLLDELSGATIEQRTPRRV 347 (422)
T ss_pred CEEEEEEEEEcHHHHHHHhcCCCceEEEEEEEEC------------------CCCCHHHHHHHHHhccCcEeeccCcHhh
Confidence 366666665554 2233322 349999999986 467889999999999998 999999987
Q ss_pred cccccCcchhhhhccCccccccceeEEEEEEEEEeecCCceeeEEeccchhHHHHHHHH--------HhhhhccchHHH
Q psy1760 127 ALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSED--------IGKMLGCGAHLK 197 (793)
Q Consensus 127 a~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~~~~~~~~~s~gtyIRsL~~d--------Ig~~L~~~a~l~ 197 (793)
+. -.....|.-.||++++...++..+.+.+.|..||||+.|++. ++..|++.+++.
T Consensus 348 ~h---------------RR~~~~R~R~I~~i~~~~i~~~~~~l~i~~eaGtYIKElv~GD~GRT~Psl~~lLg~~a~~~ 411 (422)
T PRK14554 348 KH---------------RRADLVRVRKVYDISGELIDDKHFELRIKCEGGLYIKELISGDEGRTTPSLSELLGTPAIVT 411 (422)
T ss_pred hh---------------hccccceeeEEEEEEEEEEcCcEEEEEEEEecCCEEEEEEeCCCCcccccHHHHhCCCceEE
Confidence 72 011236888899999988888889999999999999999984 777777765543
No 418
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.58 E-value=0.00011 Score=79.55 Aligned_cols=57 Identities=28% Similarity=0.373 Sum_probs=41.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCccc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d 285 (793)
..++++|.+|+|||||+|+|.+... .......|+|..... +.+ +..+.++||||...
T Consensus 122 ~~~~~~G~pnvGKSsliN~l~~~~~---------------~~~~~~~g~T~~~~~--~~~-~~~~~l~DtPGi~~ 178 (287)
T PRK09563 122 IRAMIIGIPNVGKSTLINRLAGKKI---------------AKTGNRPGVTKAQQW--IKL-GKGLELLDTPGILW 178 (287)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCc---------------cccCCCCCeEEEEEE--EEe-CCcEEEEECCCcCC
Confidence 4789999999999999999986521 122335688877643 333 34689999999743
No 419
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.57 E-value=0.00039 Score=74.53 Aligned_cols=147 Identities=20% Similarity=0.318 Sum_probs=77.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccc---------hhhccccceEEeeeee-----E--------E
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDS---------NEIEKERGITIFSKNC-----S--------I 268 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~---------~~~e~erGiTi~~~~~-----~--------~ 268 (793)
..++++|++|+||||++..|........ ..+.---.|. .......|+.+..... . .
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g--~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQG--KSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 4688999999999999888864421111 1111000111 0011223333211100 0 0
Q ss_pred eecCeEEEEecCCCcccchHH----HHHH---hh-----ccCcEEEEEeCCCCCCchhHHHHHHHH-HcCCccEEEEecc
Q psy1760 269 EYNGTRINIIDTPGHADFGGE----VERI---LS-----MVDNVLLLIDAVEGPMPQTRFVTRKAL-KLGFKPIVVVNKI 335 (793)
Q Consensus 269 ~~~~~~i~iiDTPGh~df~~e----v~~~---l~-----~aD~allVVDa~~g~~~qt~~~l~~~~-~~~ip~IvvINKi 335 (793)
...++.+.||||||....... +... .. .+|..+||+|+..+. .+........ ..+ ..-+++||+
T Consensus 151 ~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~f~~~~~-~~g~IlTKl 227 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQAKVFNEAVG-LTGIILTKL 227 (272)
T ss_pred HHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHHHHHHHhhCC-CCEEEEEcc
Confidence 124688999999997643322 2222 22 389999999997642 2222222222 222 347899999
Q ss_pred cCCCCChhhhHhHHHHHHhhhcccccccCccEEEeecCCCC
Q psy1760 336 DRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 376 (793)
Q Consensus 336 D~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~ 376 (793)
|... +...+++-... ...|+.+++ +|.
T Consensus 228 De~~-~~G~~l~~~~~-----------~~~Pi~~~~--~Gq 254 (272)
T TIGR00064 228 DGTA-KGGIILSIAYE-----------LKLPIKFIG--VGE 254 (272)
T ss_pred CCCC-CccHHHHHHHH-----------HCcCEEEEe--CCC
Confidence 9743 33434333221 147899988 555
No 420
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.57 E-value=4.3e-05 Score=73.54 Aligned_cols=55 Identities=24% Similarity=0.382 Sum_probs=37.9
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA 284 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~ 284 (793)
.++++|.+|+|||||+|+|++.... ......|.|..... +..++ .+.|+||||..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~---------------~~~~~~~~~~~~~~--~~~~~-~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV---------------SVSATPGKTKHFQT--IFLTP-TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce---------------eeCCCCCcccceEE--EEeCC-CEEEEECCCcC
Confidence 6899999999999999999865211 12233455554433 33333 68999999963
No 421
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.56 E-value=1.8e-05 Score=77.56 Aligned_cols=66 Identities=27% Similarity=0.413 Sum_probs=34.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccch
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 287 (793)
..++++|++|+|||||+|+|+...... .+.+ +....+-+.+|.......+. ....||||||..+|.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~--t~~i------s~~~~rGkHTTt~~~l~~l~---~g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQK--TGEI------SEKTGRGKHTTTHRELFPLP---DGGYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS------S--------------------SEEEEEET---TSEEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchh--hhhh------hcccCCCcccCCCeeEEecC---CCcEEEECCCCCccc
Confidence 467899999999999999998763111 0000 01112233444444433332 245899999988764
No 422
>PRK12289 GTPase RsgA; Reviewed
Probab=97.55 E-value=0.00025 Score=78.62 Aligned_cols=84 Identities=23% Similarity=0.287 Sum_probs=59.1
Q ss_pred HhhccCcEEEEEeCCCCC-Cc-hhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEe
Q psy1760 293 ILSMVDNVLLLIDAVEGP-MP-QTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYT 370 (793)
Q Consensus 293 ~l~~aD~allVVDa~~g~-~~-qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~ 370 (793)
.++.+|.+++|+|+.+.. .+ +...++..+...++|+|+|+||+|+... .+ .+...+.+. .++++++++
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~--~~-~~~~~~~~~-------~~g~~v~~i 155 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP--TE-QQQWQDRLQ-------QWGYQPLFI 155 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh--HH-HHHHHHHHH-------hcCCeEEEE
Confidence 378899999999998643 22 2244555666789999999999999642 11 222333332 234679999
Q ss_pred ecCCCCcccccccccCCchhhHHHHH
Q psy1760 371 SALHGYANENSKARQGNMIPLFEAIL 396 (793)
Q Consensus 371 SA~~g~~~~~~~~~~~gi~~Ll~~I~ 396 (793)
||++|. |+++|++.|.
T Consensus 156 SA~tg~----------GI~eL~~~L~ 171 (352)
T PRK12289 156 SVETGI----------GLEALLEQLR 171 (352)
T ss_pred EcCCCC----------CHHHHhhhhc
Confidence 999998 8888888874
No 423
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.54 E-value=0.00014 Score=76.73 Aligned_cols=85 Identities=24% Similarity=0.328 Sum_probs=59.4
Q ss_pred HhhccCcEEEEEeCCCCC-Cc-hhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEe
Q psy1760 293 ILSMVDNVLLLIDAVEGP-MP-QTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYT 370 (793)
Q Consensus 293 ~l~~aD~allVVDa~~g~-~~-qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~ 370 (793)
.++.+|.+++|+|+.+.. .. ....++..+...++|+++|+||+|+...+ .+..+..+.+.. ..++++++
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~--~~~~~~~~~~~~-------~g~~v~~~ 103 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDE--DMEKEQLDIYRN-------IGYQVLMT 103 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCH--HHHHHHHHHHHH-------CCCeEEEE
Confidence 578899999999998643 22 23344555666889999999999996432 222222233322 24679999
Q ss_pred ecCCCCcccccccccCCchhhHHHHH
Q psy1760 371 SALHGYANENSKARQGNMIPLFEAIL 396 (793)
Q Consensus 371 SA~~g~~~~~~~~~~~gi~~Ll~~I~ 396 (793)
||++|. |+++|++.+.
T Consensus 104 SAktg~----------gi~eLf~~l~ 119 (245)
T TIGR00157 104 SSKNQD----------GLKELIEALQ 119 (245)
T ss_pred ecCCch----------hHHHHHhhhc
Confidence 999998 8888888773
No 424
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.53 E-value=0.00015 Score=72.04 Aligned_cols=90 Identities=22% Similarity=0.307 Sum_probs=53.1
Q ss_pred EeccchhHHHHHHHHHhhhhccchHHHHHHhhcccccccccceeeeecccCCcceehhhhhhccCccccccccccccccc
Q psy1760 171 IHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDS 250 (793)
Q Consensus 171 ~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~ 250 (793)
+.+..|.-+..|...+...+.. ....+. ...-....+++++|.+|+|||||+++|+....
T Consensus 81 iSa~~~~gi~~L~~~l~~~l~~---~~~~~~--~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~--------------- 140 (171)
T cd01856 81 VNAKSGKGVKKLLKAAKKLLKD---IEKLKA--KGLLPRGIRAMVVGIPNVGKSTLINRLRGKKV--------------- 140 (171)
T ss_pred EECCCcccHHHHHHHHHHHHHH---Hhhhhh--cccCCCCeEEEEECCCCCCHHHHHHHHhCCCc---------------
Confidence 3444555566666666554321 011111 11111224789999999999999999986522
Q ss_pred hhhccccceEEeeeeeEEeecCeEEEEecCCCc
Q psy1760 251 NEIEKERGITIFSKNCSIEYNGTRINIIDTPGH 283 (793)
Q Consensus 251 ~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh 283 (793)
.......|+|.......+. ..+.++||||.
T Consensus 141 ~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 141 AKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred eeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 1122334667665554443 56899999996
No 425
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.51 E-value=9.3e-05 Score=82.62 Aligned_cols=63 Identities=24% Similarity=0.330 Sum_probs=43.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 286 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 286 (793)
.++.++|.+|+|||||+|+|+....... +.......+|+|....... + +..+.++||||....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~----------~~~~~s~~pgtT~~~~~~~--~-~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDK----------DVITTSPFPGTTLDLIEIP--L-DDGHSLYDTPGIINS 217 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCc----------ceeeecCCCCeEeeEEEEE--e-CCCCEEEECCCCCCh
Confidence 5899999999999999999997632211 1123455678887755433 3 234689999997643
No 426
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.46 E-value=0.00044 Score=61.92 Aligned_cols=76 Identities=18% Similarity=0.144 Sum_probs=64.3
Q ss_pred eEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEecccee-e
Q psy1760 411 QLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEI-C 489 (793)
Q Consensus 411 ~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i-~ 489 (793)
+..|.....+...|.++..-|.+|+|++||.+..... ..||+.|+...| .++++|.||+.|-|.|++++ .
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~------~gkVr~l~d~~g---~~v~~a~Ps~~V~I~G~~~~P~ 72 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTT------YGKVRAMFDENG---KRVKEAGPSTPVEILGLKGVPQ 72 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEccc------ccEEEEEECCCC---CCCCEECCCCcEEEcCCCCCCC
Confidence 4567888889999999999999999999999987544 468999997776 77999999999999999776 5
Q ss_pred cCCeEe
Q psy1760 490 IGSTIC 495 (793)
Q Consensus 490 iGdtl~ 495 (793)
.||.+.
T Consensus 73 aGd~~~ 78 (95)
T cd03702 73 AGDKFL 78 (95)
T ss_pred CCCEEE
Confidence 577654
No 427
>PRK00098 GTPase RsgA; Reviewed
Probab=97.46 E-value=0.00034 Score=76.09 Aligned_cols=84 Identities=27% Similarity=0.311 Sum_probs=57.7
Q ss_pred HhhccCcEEEEEeCCCCCCch--hHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEe
Q psy1760 293 ILSMVDNVLLLIDAVEGPMPQ--TRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYT 370 (793)
Q Consensus 293 ~l~~aD~allVVDa~~g~~~q--t~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~ 370 (793)
.++.+|.+++|+|+.+..... ...++..+...++|+++|+||+|+... .+ ...+..+.+.. ..+|++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~-~~-~~~~~~~~~~~-------~g~~v~~v 147 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDD-LE-EARELLALYRA-------IGYDVLEL 147 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCC-HH-HHHHHHHHHHH-------CCCeEEEE
Confidence 478899999999997643222 234455567789999999999999632 12 22222233222 24689999
Q ss_pred ecCCCCcccccccccCCchhhHHHH
Q psy1760 371 SALHGYANENSKARQGNMIPLFEAI 395 (793)
Q Consensus 371 SA~~g~~~~~~~~~~~gi~~Ll~~I 395 (793)
||+++. |++.|++.+
T Consensus 148 SA~~g~----------gi~~L~~~l 162 (298)
T PRK00098 148 SAKEGE----------GLDELKPLL 162 (298)
T ss_pred eCCCCc----------cHHHHHhhc
Confidence 999998 888888776
No 428
>PRK12288 GTPase RsgA; Reviewed
Probab=97.41 E-value=0.00011 Score=81.49 Aligned_cols=65 Identities=23% Similarity=0.410 Sum_probs=40.6
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccch
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 287 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 287 (793)
.++|+|.+|+|||||+|+|+...... .+.+ +....+-+-+|.......+..++ .|+||||...|.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~--t~~i------s~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEIL--VGDV------SDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccccee--eccc------cCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 47899999999999999998653221 0110 11122334456555544443333 599999988764
No 429
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.39 E-value=0.00022 Score=78.92 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=55.5
Q ss_pred ceeeeecccCCcceehhhhhhccC-ccccccccccccccchhhccccceEEeeeeeEEeec-----------------Ce
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSG-TFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-----------------GT 273 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~-~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~-----------------~~ 273 (793)
.++|+|.||+|||||.++|..... .... .+.+|+.+....+.+. ..
T Consensus 4 k~GivGlPn~GKSTlfnaLT~~~~~~~a~----------------ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a 67 (368)
T TIGR00092 4 SGGIVGLPNVGKSTLFAATTNLLGNEAAN----------------PPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPT 67 (368)
T ss_pred eEEEECCCCCChHHHHHHHhCCCccccCC----------------CCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCc
Confidence 679999999999999999976643 2111 0112222222222222 24
Q ss_pred EEEEecCCCccc-------chHHHHHHhhccCcEEEEEeCCC
Q psy1760 274 RINIIDTPGHAD-------FGGEVERILSMVDNVLLLIDAVE 308 (793)
Q Consensus 274 ~i~iiDTPGh~d-------f~~ev~~~l~~aD~allVVDa~~ 308 (793)
.+.++|.||... .+....+.++.+|++++|||+.+
T Consensus 68 ~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 68 TTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred eEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 689999999753 45567788999999999999975
No 430
>PF08068 DKCLD: DKCLD (NUC011) domain; InterPro: IPR012960 This is an N-terminal domain of dyskerin-like proteins, which is often associated with the TruB N-terminal(IPR002501 from INTERPRO) and PUA(IPR002478 from INTERPRO) domains [].; PDB: 3ZV0_D 3UAI_A 3U28_A 2AUS_C 2RFK_A 3LWV_A 3HJY_A 3HAX_A 3LWO_A 3HAY_A ....
Probab=97.39 E-value=9e-05 Score=59.00 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=15.2
Q ss_pred ceEEEeeCCCCCChHHHH
Q psy1760 10 SVVIPKYKPYGLSSNNAL 27 (793)
Q Consensus 10 ~g~~~~~Kp~g~ts~~~v 27 (793)
.|||++|||+|+|||+||
T Consensus 42 ~GvinlDKP~gPtSHeVv 59 (59)
T PF08068_consen 42 YGVINLDKPSGPTSHEVV 59 (59)
T ss_dssp TEEEEEEE-SSS-HHHHH
T ss_pred CCcEEeeCCCCCCccccC
Confidence 699999999999999997
No 431
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.38 E-value=0.00034 Score=75.67 Aligned_cols=83 Identities=24% Similarity=0.243 Sum_probs=57.2
Q ss_pred HhhccCcEEEEEeCCCCC-Cchh-HHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEe
Q psy1760 293 ILSMVDNVLLLIDAVEGP-MPQT-RFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYT 370 (793)
Q Consensus 293 ~l~~aD~allVVDa~~g~-~~qt-~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~ 370 (793)
.+..+|.+++|+|+.++. .... ..++..+...++|+++|+||+|+... .+.. .....+. ...+|++++
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~--~~~~-~~~~~~~-------~~g~~v~~v 144 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDD--EEEE-LELVEAL-------ALGYPVLAV 144 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCCh--HHHH-HHHHHHH-------hCCCeEEEE
Confidence 467899999999998765 3222 33555566789999999999999643 1111 1111111 134789999
Q ss_pred ecCCCCcccccccccCCchhhHHHH
Q psy1760 371 SALHGYANENSKARQGNMIPLFEAI 395 (793)
Q Consensus 371 SA~~g~~~~~~~~~~~gi~~Ll~~I 395 (793)
||+++. |++.|.+.|
T Consensus 145 SA~~g~----------gi~~L~~~L 159 (287)
T cd01854 145 SAKTGE----------GLDELREYL 159 (287)
T ss_pred ECCCCc----------cHHHHHhhh
Confidence 999998 888888776
No 432
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.36 E-value=0.00061 Score=67.03 Aligned_cols=63 Identities=24% Similarity=0.260 Sum_probs=38.3
Q ss_pred CeEEEEecCCCcccchHHHHH--------HhhccCcEEEEEeCCCCCCch--hHHHHHHHHHcCCccEEEEecccC
Q psy1760 272 GTRINIIDTPGHADFGGEVER--------ILSMVDNVLLLIDAVEGPMPQ--TRFVTRKALKLGFKPIVVVNKIDR 337 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~ev~~--------~l~~aD~allVVDa~~g~~~q--t~~~l~~~~~~~ip~IvvINKiD~ 337 (793)
...+.+|||||..+-...+.. ....+|.++.++|+....... ......++. ..-++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~---~ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIA---FADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHH---HCCEEEEecccC
Confidence 356789999998764333322 234579999999987532211 111222222 234889999996
No 433
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.34 E-value=0.00019 Score=73.25 Aligned_cols=146 Identities=20% Similarity=0.286 Sum_probs=75.8
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccch---------hhccccceEEeeee-------------eEEe
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSN---------EIEKERGITIFSKN-------------CSIE 269 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~---------~~e~erGiTi~~~~-------------~~~~ 269 (793)
-++++|++|+||||.+-.|......... .+.--.+|.. ...+.-|+...... ..+.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~--~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGK--KVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccc--cceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 5789999999999999888655322111 1110000100 01111222221110 0011
Q ss_pred ecCeEEEEecCCCcccch----HHHHHHhh--ccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChh
Q psy1760 270 YNGTRINIIDTPGHADFG----GEVERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPE 343 (793)
Q Consensus 270 ~~~~~i~iiDTPGh~df~----~ev~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~ 343 (793)
-+++.+.||||||..... .++...+. ..+-++||+||+.+.. ............++. =++++|+|... ++.
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~-~~~~~~~~~~~~~~~-~lIlTKlDet~-~~G 157 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE-DLEQALAFYEAFGID-GLILTKLDETA-RLG 157 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH-HHHHHHHHHHHSSTC-EEEEESTTSSS-TTH
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH-HHHHHHHHhhcccCc-eEEEEeecCCC-Ccc
Confidence 135779999999975543 33333322 3578999999987632 222333443444444 45699999854 334
Q ss_pred hhHhHHHHHHhhhcccccccCccEEEeecC
Q psy1760 344 WVVDATFDLFDKLCATEEQLDFPVIYTSAL 373 (793)
Q Consensus 344 ~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~ 373 (793)
.+++-... ...|+-++|.=
T Consensus 158 ~~l~~~~~-----------~~~Pi~~it~G 176 (196)
T PF00448_consen 158 ALLSLAYE-----------SGLPISYITTG 176 (196)
T ss_dssp HHHHHHHH-----------HTSEEEEEESS
T ss_pred cceeHHHH-----------hCCCeEEEECC
Confidence 44433322 14688888743
No 434
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.34 E-value=0.00066 Score=75.83 Aligned_cols=99 Identities=18% Similarity=0.097 Sum_probs=64.8
Q ss_pred ccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCC--hhhhHhHHHHHHhhhccccc
Q psy1760 284 ADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR--PEWVVDATFDLFDKLCATEE 361 (793)
Q Consensus 284 ~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~--~~~v~~~i~~~~~~l~~~~~ 361 (793)
.+|...+......+|++++|+|+.+.......++.+.+ .+.|+++|+||+|+.... .++..+.+++.+.+.+..
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~-- 126 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLK-- 126 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCC--
Confidence 46777666677889999999999875544333333332 267889999999986432 223333333333333321
Q ss_pred ccCccEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 362 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 362 ~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
...++.+||++|+ |+++|++.|.++
T Consensus 127 --~~~i~~vSAk~g~----------gv~eL~~~l~~~ 151 (360)
T TIGR03597 127 --PVDIILVSAKKGN----------GIDELLDKIKKA 151 (360)
T ss_pred --cCcEEEecCCCCC----------CHHHHHHHHHHH
Confidence 0138899999998 888888888554
No 435
>PRK01889 GTPase RsgA; Reviewed
Probab=97.31 E-value=0.00072 Score=75.37 Aligned_cols=82 Identities=22% Similarity=0.205 Sum_probs=59.8
Q ss_pred hhccCcEEEEEeCCCCCCc-hhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEeec
Q psy1760 294 LSMVDNVLLLIDAVEGPMP-QTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSA 372 (793)
Q Consensus 294 l~~aD~allVVDa~~g~~~-qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA 372 (793)
+..+|.+++|+++...+.+ .....+..+...++++++|+||+|+.+. .+...+++. .+ ...+||+++|+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~-~~~~~~~~~----~~-----~~g~~Vi~vSa 179 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED-AEEKIAEVE----AL-----APGVPVLAVSA 179 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC-HHHHHHHHH----Hh-----CCCCcEEEEEC
Confidence 5778999999999766655 4446777788899999999999999753 222222222 22 22578999999
Q ss_pred CCCCcccccccccCCchhhHHHH
Q psy1760 373 LHGYANENSKARQGNMIPLFEAI 395 (793)
Q Consensus 373 ~~g~~~~~~~~~~~gi~~Ll~~I 395 (793)
++|. |++.|.+.|
T Consensus 180 ~~g~----------gl~~L~~~L 192 (356)
T PRK01889 180 LDGE----------GLDVLAAWL 192 (356)
T ss_pred CCCc----------cHHHHHHHh
Confidence 9998 777777776
No 436
>PRK12289 GTPase RsgA; Reviewed
Probab=97.29 E-value=0.00013 Score=80.88 Aligned_cols=65 Identities=20% Similarity=0.246 Sum_probs=39.3
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccch
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 287 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 287 (793)
.++|+|.+|+|||||+|+|+....... +.+ +....+-+-+|.......+.- + ..|+||||...|.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t--~~v------s~~~~rGrHTT~~~~l~~l~~-g--~~liDTPG~~~~~ 238 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRV--GKV------SGKLGRGRHTTRHVELFELPN-G--GLLADTPGFNQPD 238 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcccccc--ccc------cCCCCCCCCcCceeEEEECCC-C--cEEEeCCCccccc
Confidence 468999999999999999986532111 000 011223334565554333322 2 2799999987654
No 437
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.27 E-value=0.0003 Score=74.33 Aligned_cols=63 Identities=24% Similarity=0.284 Sum_probs=40.0
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 286 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 286 (793)
.++++|++|+|||||+|+|+...... .+.+ +....+-+.+|.......+ .+ ..|+||||...|
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~--t~~i------~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQ--VNDI------SSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEF 184 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhcc--ccce------eccCCCCCCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence 57899999999999999998652111 0000 0112233456666655555 22 389999998765
No 438
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.27 E-value=0.00016 Score=77.41 Aligned_cols=65 Identities=31% Similarity=0.452 Sum_probs=43.5
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccch
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 287 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 287 (793)
..+++|++|+|||||+|+|...... +.+.+ +....+-+-+|.......+..+| .|+||||...|.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~--~t~eI------S~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQ--KTGEI------SEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhh--hhhhh------cccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 4589999999999999999863211 11110 12233455667766666666566 799999998764
No 439
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.26 E-value=0.00033 Score=76.98 Aligned_cols=56 Identities=25% Similarity=0.375 Sum_probs=43.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA 284 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~ 284 (793)
..+.++|-||+|||||+|+|++... ....+.+|+|.......+. ..+.|+||||..
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~---------------~~~s~~PG~Tk~~q~i~~~---~~i~LlDtPGii 188 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKV---------------AKTSNRPGTTKGIQWIKLD---DGIYLLDTPGII 188 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccc---------------eeeCCCCceecceEEEEcC---CCeEEecCCCcC
Confidence 3689999999999999999998743 2344556888776666554 348999999963
No 440
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.24 E-value=0.0004 Score=67.81 Aligned_cols=81 Identities=16% Similarity=0.282 Sum_probs=49.2
Q ss_pred EeccchhHHHHHHHHHhhhhccchHHHHHHhhcccccccccceeeeecccCCcceehhhhhhccCccccccccccccccc
Q psy1760 171 IHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDS 250 (793)
Q Consensus 171 ~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~ 250 (793)
+.+..|.-+..|...|.+.+.. .+ ....+.++|.+++|||||+++|.+...
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~~-----------~~---~~~~~~~ig~~~~Gkssl~~~l~~~~~--------------- 126 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAKI-----------DG---KEGKVGVVGYPNVGKSSIINALKGRHS--------------- 126 (156)
T ss_pred EEccccccHHHHHHHHHHHHhh-----------cC---CCcEEEEECCCCCCHHHHHHHHhCCCc---------------
Confidence 4555666667776666544321 01 125789999999999999999975421
Q ss_pred hhhccccceEEeeeeeEEeecCeEEEEecCCCc
Q psy1760 251 NEIEKERGITIFSKNCSIEYNGTRINIIDTPGH 283 (793)
Q Consensus 251 ~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh 283 (793)
.......|+|..... +. .+..+.+|||||.
T Consensus 127 ~~~~~~~~~t~~~~~--~~-~~~~~~~~DtpGi 156 (156)
T cd01859 127 ASTSPSPGYTKGEQL--VK-ITSKIYLLDTPGV 156 (156)
T ss_pred cccCCCCCeeeeeEE--EE-cCCCEEEEECcCC
Confidence 112223355543221 22 2347999999994
No 441
>PRK13796 GTPase YqeH; Provisional
Probab=97.22 E-value=0.00041 Score=77.60 Aligned_cols=61 Identities=20% Similarity=0.327 Sum_probs=42.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA 284 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~ 284 (793)
.++.++|.+|+|||||+|+|+...... .+.....+.+|+|.......+. + ...++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~----------~~~~~~s~~pGTT~~~~~~~l~--~-~~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGE----------KDVITTSRFPGTTLDKIEIPLD--D-GSFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCc----------cceEEecCCCCccceeEEEEcC--C-CcEEEECCCcc
Confidence 478999999999999999998653110 0122245678999876554442 2 24899999974
No 442
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.21 E-value=0.0011 Score=72.65 Aligned_cols=130 Identities=14% Similarity=0.066 Sum_probs=84.9
Q ss_pred ceEEeeeeeEEeecCeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCC-----------CchhHHHHHHHHH---
Q psy1760 258 GITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-----------MPQTRFVTRKALK--- 323 (793)
Q Consensus 258 GiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~-----------~~qt~~~l~~~~~--- 323 (793)
.-|.......+.+++..+.++|++|.......+......++++++|||.++-- +..+...++.+..
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 34555566788899999999999999999999999999999999999998631 1223333433332
Q ss_pred -cCCccEEEEecccCCCC-------------------ChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCccccccc
Q psy1760 324 -LGFKPIVVVNKIDRSNA-------------------RPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA 383 (793)
Q Consensus 324 -~~ip~IvvINKiD~~~a-------------------~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~ 383 (793)
.+.|+++++||.|+... +++.+.+-+...|.++..... ..+-+.+++|..-.
T Consensus 226 ~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~-~~~~~~~t~a~Dt~------- 297 (317)
T cd00066 226 FANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPN-KEIYPHFTCATDTE------- 297 (317)
T ss_pred ccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCC-CeEEEEeccccchH-------
Confidence 46799999999996321 234444555555555443211 12223445665543
Q ss_pred ccCCchhhHHHHHhh
Q psy1760 384 RQGNMIPLFEAILKY 398 (793)
Q Consensus 384 ~~~gi~~Ll~~I~~~ 398 (793)
++..+++++.+.
T Consensus 298 ---~i~~vf~~v~~~ 309 (317)
T cd00066 298 ---NIRFVFDAVKDI 309 (317)
T ss_pred ---HHHHHHHHHHHH
Confidence 566666665443
No 443
>PRK12288 GTPase RsgA; Reviewed
Probab=97.19 E-value=0.0012 Score=73.27 Aligned_cols=88 Identities=19% Similarity=0.319 Sum_probs=58.6
Q ss_pred HhhccCcEEEEEeCCCCCCchh-HHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEee
Q psy1760 293 ILSMVDNVLLLIDAVEGPMPQT-RFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTS 371 (793)
Q Consensus 293 ~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~S 371 (793)
.+..+|.+++|.+......... ..++..+...++|+++|+||+|+..........+..+.+. ...+|++++|
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~-------~~g~~v~~vS 189 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYR-------NIGYRVLMVS 189 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHH-------hCCCeEEEEe
Confidence 3577899998888764433322 2344456677899999999999965321112222222222 2346899999
Q ss_pred cCCCCcccccccccCCchhhHHHHHh
Q psy1760 372 ALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 372 A~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
|+++. |+++|++.|..
T Consensus 190 A~tg~----------GideL~~~L~~ 205 (347)
T PRK12288 190 SHTGE----------GLEELEAALTG 205 (347)
T ss_pred CCCCc----------CHHHHHHHHhh
Confidence 99998 89999988853
No 444
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.19 E-value=0.00094 Score=66.24 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=53.9
Q ss_pred EEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCcc-EEEEecccCCCCChhhhHhHHHH
Q psy1760 274 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNARPEWVVDATFD 351 (793)
Q Consensus 274 ~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~-IvvINKiD~~~a~~~~v~~~i~~ 351 (793)
.+.|||||+..+. ....++..+|.+|+++++.......+...++.+...+.+. .+++|++|.......+..+++.+
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~~~~ 140 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVEDIEE 140 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhHHHHHHH
Confidence 7999999986543 4667789999999999988766666666677777666654 68999998754333333334433
No 445
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.19 E-value=0.00039 Score=72.43 Aligned_cols=88 Identities=16% Similarity=0.192 Sum_probs=52.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH--
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG-- 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~-- 288 (793)
.-|+|+|.+++|||||+|+|++....+.-. +. .....+|+-+....... ..+..+.++||||..+...
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~--------~~-~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~ 77 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVM--------DT-SQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGE 77 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEec--------CC-CCCCccceEEEeccccC-CCcceEEEEecCCcCccccCc
Confidence 357999999999999999998763122110 00 01112343332211111 1467899999999765422
Q ss_pred ----HHHHHhhc--cCcEEEEEeCCC
Q psy1760 289 ----EVERILSM--VDNVLLLIDAVE 308 (793)
Q Consensus 289 ----ev~~~l~~--aD~allVVDa~~ 308 (793)
....++.. +|.+|+.++...
T Consensus 78 ~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 78 FEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred hhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 22334444 899998888753
No 446
>KOG2485|consensus
Probab=97.19 E-value=0.00065 Score=72.29 Aligned_cols=77 Identities=22% Similarity=0.237 Sum_probs=54.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCc-ccchHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH-ADFGGE 289 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh-~df~~e 289 (793)
-++.++|-||+|||||+|++........ -...+..++|+|+......--.+...+.++||||. ..-...
T Consensus 144 ~~vmVvGvPNVGKSsLINa~r~~~Lrk~----------k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~ 213 (335)
T KOG2485|consen 144 YNVMVVGVPNVGKSSLINALRNVHLRKK----------KAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVD 213 (335)
T ss_pred eeEEEEcCCCCChHHHHHHHHHHHhhhc----------cceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCC
Confidence 4899999999999999999875533322 22345667899998776443345667999999995 344455
Q ss_pred HHHHhhcc
Q psy1760 290 VERILSMV 297 (793)
Q Consensus 290 v~~~l~~a 297 (793)
.+..++-|
T Consensus 214 ~e~~lKLA 221 (335)
T KOG2485|consen 214 VEDGLKLA 221 (335)
T ss_pred HHHhhhhh
Confidence 56665544
No 447
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.16 E-value=0.0022 Score=73.07 Aligned_cols=177 Identities=19% Similarity=0.289 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhhhccchHHHHHHhhcccccccccceeeeecccCCcceehhhhhhccCccccccc-cc-ccc----cc-c
Q psy1760 178 YIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQN-IN-ARI----MD-S 250 (793)
Q Consensus 178 yIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~-v~-~~~----~D-~ 250 (793)
-++.+..++...++.......+ . . -...|.++|++|+||||++..|............ +. +.+ .+ .
T Consensus 70 ~~~~v~~~L~~~l~~~~~~~~~---~-~---~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL 142 (437)
T PRK00771 70 VIKIVYEELVKLLGEETEPLVL---P-L---KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQL 142 (437)
T ss_pred HHHHHHHHHHHHhCCCcccccc---C-C---CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHH
Confidence 3566666676666543211111 0 1 1247899999999999999888643211110000 00 000 00 0
Q ss_pred hhhccccceEEeeeeeE----------E-eecCeEEEEecCCCcccchHH----HHH--HhhccCcEEEEEeCCCCCCch
Q psy1760 251 NEIEKERGITIFSKNCS----------I-EYNGTRINIIDTPGHADFGGE----VER--ILSMVDNVLLLIDAVEGPMPQ 313 (793)
Q Consensus 251 ~~~e~erGiTi~~~~~~----------~-~~~~~~i~iiDTPGh~df~~e----v~~--~l~~aD~allVVDa~~g~~~q 313 (793)
......-|+........ + ...++.+.||||||......+ +.. .+..+|.+++|+||..|.
T Consensus 143 ~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--- 219 (437)
T PRK00771 143 KQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--- 219 (437)
T ss_pred HHHHHHcCCcEEecCCccCHHHHHHHHHHHhhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---
Confidence 00011122222111000 0 012457999999996554333 222 245689999999998762
Q ss_pred hHHHHHHHHHcC--Ccc-EEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccc
Q psy1760 314 TRFVTRKALKLG--FKP-IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANEN 380 (793)
Q Consensus 314 t~~~l~~~~~~~--ip~-IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~ 380 (793)
..+..+..++ +++ -+++||+|.. ++.-..++-... ...|+.|++. |+.+.+
T Consensus 220 --~av~~a~~F~~~l~i~gvIlTKlD~~-a~~G~~ls~~~~-----------~~~Pi~fig~--Ge~v~D 273 (437)
T PRK00771 220 --QAKNQAKAFHEAVGIGGIIITKLDGT-AKGGGALSAVAE-----------TGAPIKFIGT--GEKIDD 273 (437)
T ss_pred --HHHHHHHHHHhcCCCCEEEEecccCC-CcccHHHHHHHH-----------HCcCEEEEec--CCCccc
Confidence 2233344332 444 5789999974 333333333222 2468888875 444443
No 448
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=97.15 E-value=0.0029 Score=57.85 Aligned_cols=83 Identities=18% Similarity=0.215 Sum_probs=66.3
Q ss_pred eEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecC-------ceEEecccC--CCcEEE
Q psy1760 411 QLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGL-------DRVLVNEAL--SGDIVL 481 (793)
Q Consensus 411 ~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~-------~~~~v~~a~--aGdIv~ 481 (793)
+..|..+..+++.|.++..-|++|+|++||.|.+... +| ....||+.|....++ +...+++|. +|--|.
T Consensus 2 ~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~-~G-pi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~ 79 (110)
T cd03703 2 QGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGL-NG-PIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKIL 79 (110)
T ss_pred cEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccC-CC-CceEEEeEecCCCCchhhccccccceeeEEecCCCcEEE
Confidence 4567788889999999999999999999999999876 55 345789999988875 234666665 777777
Q ss_pred EeccceeecCCeEe
Q psy1760 482 ITGIEEICIGSTIC 495 (793)
Q Consensus 482 i~gl~~i~iGdtl~ 495 (793)
..|++++..|+.+.
T Consensus 80 ~~gL~~v~aG~~~~ 93 (110)
T cd03703 80 APDLEKAIAGSPLL 93 (110)
T ss_pred eCCCccccCCCEEE
Confidence 78899888888764
No 449
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.15 E-value=0.0022 Score=71.18 Aligned_cols=82 Identities=15% Similarity=0.071 Sum_probs=63.7
Q ss_pred cceEEeeeeeEEeecCeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCC-----------CchhHHHHHHHHH--
Q psy1760 257 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-----------MPQTRFVTRKALK-- 323 (793)
Q Consensus 257 rGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~-----------~~qt~~~l~~~~~-- 323 (793)
+-.|.......+.+++..+.++|..|+..+...+...+..++++|+|+|.++-- +..+...++.+..
T Consensus 168 r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~ 247 (342)
T smart00275 168 RVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR 247 (342)
T ss_pred eCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc
Confidence 334555667788899999999999999999999999999999999999998621 2233444444433
Q ss_pred --cCCccEEEEecccCC
Q psy1760 324 --LGFKPIVVVNKIDRS 338 (793)
Q Consensus 324 --~~ip~IvvINKiD~~ 338 (793)
.+.|+++++||.|+.
T Consensus 248 ~~~~~piil~~NK~D~~ 264 (342)
T smart00275 248 WFANTSIILFLNKIDLF 264 (342)
T ss_pred cccCCcEEEEEecHHhH
Confidence 467999999999974
No 450
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=97.07 E-value=0.0034 Score=54.19 Aligned_cols=74 Identities=26% Similarity=0.326 Sum_probs=50.6
Q ss_pred CceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--ccc
Q psy1760 409 PLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GIE 486 (793)
Q Consensus 409 p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--gl~ 486 (793)
|-.+.|...+.-.... +..|+|..|+|++|..+ . |. .-.+|.+|+ .+.+++++|.+||-|+++ |.-
T Consensus 4 p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l----~--G~-~iG~I~sIe----~~~k~v~~A~~G~eVai~Ieg~~ 71 (81)
T PF14578_consen 4 PGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL----D--GR-KIGRIKSIE----DNGKNVDEAKKGDEVAISIEGPT 71 (81)
T ss_dssp SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE----C--SS-CEEEEEEEE----ETTEEESEEETT-EEEEEEET--
T ss_pred ceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc----C--CE-EEEEEEEeE----ECCcCccccCCCCEEEEEEeCCc
Confidence 4455555555555556 78889999999999988 2 43 356777776 455999999999999985 655
Q ss_pred eeecCCeE
Q psy1760 487 EICIGSTI 494 (793)
Q Consensus 487 ~i~iGdtl 494 (793)
++.-||+|
T Consensus 72 ~i~eGDiL 79 (81)
T PF14578_consen 72 QIKEGDIL 79 (81)
T ss_dssp TB-TT-EE
T ss_pred cCCCCCEE
Confidence 77888887
No 451
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.04 E-value=0.0044 Score=70.71 Aligned_cols=149 Identities=15% Similarity=0.229 Sum_probs=75.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchh------h---ccccceEEeeeeeEE-------eecCeE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNE------I---EKERGITIFSKNCSI-------EYNGTR 274 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~------~---e~erGiTi~~~~~~~-------~~~~~~ 274 (793)
..++++|++|+||||++-.|............+.---.|... + .+..|+........- ...++.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 478999999999999988875432100000111100011100 0 011122221111100 123578
Q ss_pred EEEecCCCcccch----HHHHHHhh---ccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHh
Q psy1760 275 INIIDTPGHADFG----GEVERILS---MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVD 347 (793)
Q Consensus 275 i~iiDTPGh~df~----~ev~~~l~---~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~ 347 (793)
+.||||||...+. .++...+. ..+-+.+|++++.+.. .....+......++ .=+++||+|... .+..+++
T Consensus 302 lVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~-~l~~~~~~f~~~~~-~~vI~TKlDet~-~~G~i~~ 378 (424)
T PRK05703 302 VILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE-DLKDIYKHFSRLPL-DGLIFTKLDETS-SLGSILS 378 (424)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH-HHHHHHHHhCCCCC-CEEEEecccccc-cccHHHH
Confidence 9999999985443 33444444 2235688899875421 22233333333332 258899999843 3444443
Q ss_pred HHHHHHhhhcccccccCccEEEeecC
Q psy1760 348 ATFDLFDKLCATEEQLDFPVIYTSAL 373 (793)
Q Consensus 348 ~i~~~~~~l~~~~~~l~~Pvi~~SA~ 373 (793)
-+.+. ..|+.|++.=
T Consensus 379 ~~~~~-----------~lPv~yit~G 393 (424)
T PRK05703 379 LLIES-----------GLPISYLTNG 393 (424)
T ss_pred HHHHH-----------CCCEEEEeCC
Confidence 33222 4688888743
No 452
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.01 E-value=0.00046 Score=74.65 Aligned_cols=66 Identities=30% Similarity=0.471 Sum_probs=41.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccch
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 287 (793)
..++++|++|+|||||+|+|++..... .+.+ +....+-+++|.......+...+ .++||||..+|.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~--~g~v------~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLA--TGEI------SEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhcc--ccce------eccCCCCCcccceEEEEEcCCCC---EEEECCCCCccC
Confidence 468999999999999999998653211 1110 01122334466655444443333 799999997764
No 453
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=97.00 E-value=0.0029 Score=56.73 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=63.1
Q ss_pred eEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEecccee-e
Q psy1760 411 QLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEI-C 489 (793)
Q Consensus 411 ~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i-~ 489 (793)
+..|.....+...|.++..-|.+|+|++||.+..... ..||+.+....| +.+.+|.|++.|.+.|+++. .
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~------~GkVr~~~d~~g---~~v~~a~Ps~~v~i~g~~~~p~ 72 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGT------YGKIRTMVDENG---KALLEAGPSTPVEILGLKDVPK 72 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCc------cceEEEEECCCC---CCccccCCCCCEEEeeecCCcc
Confidence 4567888889999999999999999999999988543 568999987665 67999999999999998764 5
Q ss_pred cCCeEe
Q psy1760 490 IGSTIC 495 (793)
Q Consensus 490 iGdtl~ 495 (793)
.||.+-
T Consensus 73 aGd~~~ 78 (95)
T cd03701 73 AGDGVL 78 (95)
T ss_pred CCCEEE
Confidence 676653
No 454
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.0015 Score=72.54 Aligned_cols=146 Identities=16% Similarity=0.151 Sum_probs=74.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccch---------hhccccceEEeeeee---------EEe-ec
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSN---------EIEKERGITIFSKNC---------SIE-YN 271 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~---------~~e~erGiTi~~~~~---------~~~-~~ 271 (793)
+.|+++|+.|+||||++..|........ ..+.-...|.. .....-|+.+..... .+. ..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~G--kkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 5789999999999999999865321100 00100000100 000011222211100 000 11
Q ss_pred CeEEEEecCCCcccc----hHHHHHHhh--ccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhh
Q psy1760 272 GTRINIIDTPGHADF----GGEVERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWV 345 (793)
Q Consensus 272 ~~~i~iiDTPGh~df----~~ev~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v 345 (793)
++.+.||||||.... ..++.+.+. ..|.++||+||+.+.. .....++.....++ -=++++|+|-.. +.-.+
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~-d~~~i~~~F~~~~i-dglI~TKLDET~-k~G~i 396 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIHI-DGIVFTKFDETA-SSGEL 396 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH-HHHHHHHHhcCCCC-CEEEEEcccCCC-CccHH
Confidence 468999999997543 333444443 2477899999875321 11223333333222 257899999764 34444
Q ss_pred HhHHHHHHhhhcccccccCccEEEeec
Q psy1760 346 VDATFDLFDKLCATEEQLDFPVIYTSA 372 (793)
Q Consensus 346 ~~~i~~~~~~l~~~~~~l~~Pvi~~SA 372 (793)
++-... ...|+.|++.
T Consensus 397 Lni~~~-----------~~lPIsyit~ 412 (436)
T PRK11889 397 LKIPAV-----------SSAPIVLMTD 412 (436)
T ss_pred HHHHHH-----------HCcCEEEEeC
Confidence 443322 1568888774
No 455
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.95 E-value=0.0034 Score=62.69 Aligned_cols=67 Identities=24% Similarity=0.284 Sum_probs=54.2
Q ss_pred cCeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCC
Q psy1760 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN 339 (793)
Q Consensus 271 ~~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~ 339 (793)
+.+.+.|+|||+... .....++..+|.+++++.+...........++.+...+.|..+|+||+|...
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCc
Confidence 568899999997643 3566778999999999998866555667778888888999899999999753
No 456
>KOG1491|consensus
Probab=96.92 E-value=0.0012 Score=70.95 Aligned_cols=89 Identities=18% Similarity=0.255 Sum_probs=60.5
Q ss_pred ccccccccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec------------
Q psy1760 204 IDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN------------ 271 (793)
Q Consensus 204 ~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~------------ 271 (793)
.|...-...++|+|.||+|||||.|+|....-. .+.-+-.||++..+.+...
T Consensus 14 ~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~----------------~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~ 77 (391)
T KOG1491|consen 14 LGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAG----------------AANFPFCTIDPNEARVEVPDSRFDLLCPIYG 77 (391)
T ss_pred ccCCCCcceeeEeeCCCCchHHHHHHHhcCCCC----------------ccCCCcceeccccceeecCchHHHHHHHhcC
Confidence 344443457899999999999999999754211 1222334555554444332
Q ss_pred -----CeEEEEecCCCccc-------chHHHHHHhhccCcEEEEEeCCC
Q psy1760 272 -----GTRINIIDTPGHAD-------FGGEVERILSMVDNVLLLIDAVE 308 (793)
Q Consensus 272 -----~~~i~iiDTPGh~d-------f~~ev~~~l~~aD~allVVDa~~ 308 (793)
...+++.|++|... .+....+-++.+|+++-||++.+
T Consensus 78 ~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 78 PKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred CcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 13689999999632 44556667899999999999975
No 457
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.0016 Score=72.10 Aligned_cols=146 Identities=17% Similarity=0.155 Sum_probs=73.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccch---------hhccccceEEeeeee--E-------Ee-ec
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSN---------EIEKERGITIFSKNC--S-------IE-YN 271 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~---------~~e~erGiTi~~~~~--~-------~~-~~ 271 (793)
..++++|+.|+||||++..|........ ..+.-.-.|.. .....-|+.+..... . .. ..
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 4679999999999999998875421100 01100000100 001111221111000 0 00 13
Q ss_pred CeEEEEecCCCcccc----hHHHHHHhh--ccCcEEEEEeCCCCCCchhHHHHHHHHHc-CCcc-EEEEecccCCCCChh
Q psy1760 272 GTRINIIDTPGHADF----GGEVERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKL-GFKP-IVVVNKIDRSNARPE 343 (793)
Q Consensus 272 ~~~i~iiDTPGh~df----~~ev~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~-~ip~-IvvINKiD~~~a~~~ 343 (793)
++.+.||||||.... ..++..... ..|.++||+++... .+ .....+..+ .+++ -+++||+|.. +++-
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~--d~~~i~~~f~~l~i~glI~TKLDET-~~~G 359 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SA--DVMTILPKLAEIPIDGFIITKMDET-TRIG 359 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HH--HHHHHHHhcCcCCCCEEEEEcccCC-CCcc
Confidence 578999999997433 333333333 23667788877432 21 122222222 2333 6789999985 3345
Q ss_pred hhHhHHHHHHhhhcccccccCccEEEeecCC
Q psy1760 344 WVVDATFDLFDKLCATEEQLDFPVIYTSALH 374 (793)
Q Consensus 344 ~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~ 374 (793)
.+++-.... ..|+.|+|.=.
T Consensus 360 ~~Lsv~~~t-----------glPIsylt~GQ 379 (407)
T PRK12726 360 DLYTVMQET-----------NLPVLYMTDGQ 379 (407)
T ss_pred HHHHHHHHH-----------CCCEEEEecCC
Confidence 444433322 56888887543
No 458
>KOG4423|consensus
Probab=96.87 E-value=0.00011 Score=72.15 Aligned_cols=157 Identities=14% Similarity=0.158 Sum_probs=93.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCe---EEEEecCCCcccch
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT---RINIIDTPGHADFG 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~---~i~iiDTPGh~df~ 287 (793)
..+-++|.-++|||+++.+.+.+......... |-.+.....+.|+++ ++.|||..|+..|+
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAt----------------IgvdfalkVl~wdd~t~vRlqLwdIagQerfg 89 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRAT----------------IGVDFALKVLQWDDKTIVRLQLWDIAGQERFG 89 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHH----------------HhHHHHHHHhccChHHHHHHHHhcchhhhhhc
Confidence 36778999999999999988765322111110 111112233455543 56799999999987
Q ss_pred HHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHH------HcCC--ccEEEEecccCCCCChhhhHhHHHHHHhhhccc
Q psy1760 288 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKAL------KLGF--KPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 359 (793)
Q Consensus 288 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~------~~~i--p~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~ 359 (793)
....-+.+.+.++.+|+|.+......-..-|..-+ -.|. |+++..||+|....-..+.-.++.++-++.+..
T Consensus 90 ~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~ 169 (229)
T KOG4423|consen 90 NMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFE 169 (229)
T ss_pred ceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCcc
Confidence 77666788899999999988654332222222211 1233 457788999986432211112222222222222
Q ss_pred ccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 360 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 360 ~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
-.+.+|++.+. ++++..+.+++.+
T Consensus 170 ------gwtets~Kenk----------ni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 170 ------GWTETSAKENK----------NIPEAQRELVEKI 193 (229)
T ss_pred ------ceeeecccccc----------ChhHHHHHHHHHH
Confidence 25789999876 6666666665544
No 459
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.81 E-value=0.0036 Score=69.49 Aligned_cols=152 Identities=16% Similarity=0.210 Sum_probs=83.0
Q ss_pred ceeeeecccCCcceehhhhhhccCcccccc-ccccccccchhhccccceEEeeee--------eEEeec---CeEEEEec
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQ-NINARIMDSNEIEKERGITIFSKN--------CSIEYN---GTRINIID 279 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~-~v~~~~~D~~~~e~erGiTi~~~~--------~~~~~~---~~~i~iiD 279 (793)
=++++|++-+||||++.++....-...-.. .-..+..|..+.+. .|-||.... ..+..+ ..++.+||
T Consensus 19 YiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~-aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiD 97 (492)
T PF09547_consen 19 YIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSG-AGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLID 97 (492)
T ss_pred EEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCC-CCCceeccCCcccCCcceEEEecCCceEEEEEEe
Confidence 589999999999999999986532221111 11133344444332 355553322 122222 36788999
Q ss_pred CCCcc--------c-----------------chHHHHHHh----hc-cC-cEEEEEeCCCCCC------chhHHHHHHHH
Q psy1760 280 TPGHA--------D-----------------FGGEVERIL----SM-VD-NVLLLIDAVEGPM------PQTRFVTRKAL 322 (793)
Q Consensus 280 TPGh~--------d-----------------f~~ev~~~l----~~-aD-~allVVDa~~g~~------~qt~~~l~~~~ 322 (793)
+-|+. + |....+-+- .. +- ++|+--|.+-+-. .....+...++
T Consensus 98 CVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk 177 (492)
T PF09547_consen 98 CVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELK 177 (492)
T ss_pred ecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHH
Confidence 99851 1 222222221 11 22 3333445443222 23456788889
Q ss_pred HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEeecCC
Q psy1760 323 KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALH 374 (793)
Q Consensus 323 ~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~ 374 (793)
+.|.|+|+++|=.+-....-.+..+++.+. -++||+++++.+
T Consensus 178 ~igKPFvillNs~~P~s~et~~L~~eL~ek----------Y~vpVlpvnc~~ 219 (492)
T PF09547_consen 178 EIGKPFVILLNSTKPYSEETQELAEELEEK----------YDVPVLPVNCEQ 219 (492)
T ss_pred HhCCCEEEEEeCCCCCCHHHHHHHHHHHHH----------hCCcEEEeehHH
Confidence 999999999998764332222233333322 257888887765
No 460
>KOG3905|consensus
Probab=96.79 E-value=0.0048 Score=65.72 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=42.8
Q ss_pred cCCccEEEEecccCCC----------CChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHH
Q psy1760 324 LGFKPIVVVNKIDRSN----------ARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 393 (793)
Q Consensus 324 ~~ip~IvvINKiD~~~----------a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~ 393 (793)
+|+|++||++|+|... +.++.+...++.+...+++. .||+|++..- |++-|..
T Consensus 221 lGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Gaa-------LiyTSvKE~K----------NidllyK 283 (473)
T KOG3905|consen 221 LGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAA-------LIYTSVKETK----------NIDLLYK 283 (473)
T ss_pred CCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCce-------eEEeeccccc----------chHHHHH
Confidence 5788999999999732 23445555566666556653 7999999875 8888888
Q ss_pred HHHhhc
Q psy1760 394 AILKYV 399 (793)
Q Consensus 394 ~I~~~l 399 (793)
.|+...
T Consensus 284 Yivhr~ 289 (473)
T KOG3905|consen 284 YIVHRS 289 (473)
T ss_pred HHHHHh
Confidence 887654
No 461
>cd02553 PseudoU_synth_RsuA PseudoU_synth_RsuA: Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.
Probab=96.78 E-value=0.0012 Score=65.53 Aligned_cols=68 Identities=21% Similarity=0.215 Sum_probs=50.9
Q ss_pred EEEeeCCCCCChH-------HHHHHHHHHhccccccCCCCCCCCCcceeeeeeccc--ccccchhccCCceEEEEEE
Q psy1760 12 VIPKYKPYGLSSN-------NALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEA--TKFSNYLSEADKYYEAIIH 79 (793)
Q Consensus 12 ~~~~~Kp~g~ts~-------~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~--tk~~~~~~~~~K~Y~~~~~ 79 (793)
++++|||+|+.+| .+..++.+.+...++.-.|-||-..||+|++|-... .++..--....|+|.|.+.
T Consensus 2 ~ivvnKP~G~~~~~~~~~~~tl~~~l~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~i~K~Y~a~V~ 78 (167)
T cd02553 2 YLMLNKPAGVVCATKDPHHPTVIDLLPEPDRRRDLFPVGRLDKDTTGLLLLTNDGQLAHRLTSPKKHVPKTYEVTLA 78 (167)
T ss_pred EEEEECCCCCEeCCCCCCCCcHHHHhhhhcccCCeEEcccCCCCCEEEEEEEeCHHHHHHhhCCcCCCceEEEEEEc
Confidence 5899999998876 256667665555678899999999999999998763 2233222236799999986
No 462
>PRK13796 GTPase YqeH; Provisional
Probab=96.77 E-value=0.0054 Score=68.67 Aligned_cols=97 Identities=23% Similarity=0.093 Sum_probs=58.5
Q ss_pred cchHHHHHHhhccC-cEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCC--hhhhHhHHHHHHhhhccccc
Q psy1760 285 DFGGEVERILSMVD-NVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR--PEWVVDATFDLFDKLCATEE 361 (793)
Q Consensus 285 df~~ev~~~l~~aD-~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~--~~~v~~~i~~~~~~l~~~~~ 361 (793)
+|.. +.+.+..+| .+++|||+.+........+.+.. .+.|+++|+||+|+.... .+++.+.+.......+..
T Consensus 58 ~~~~-~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~-- 132 (365)
T PRK13796 58 DFLK-LLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLR-- 132 (365)
T ss_pred HHHH-HHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCC--
Confidence 4544 445556566 88999999885433322222222 267889999999996432 122222222222222221
Q ss_pred ccCccEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 362 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 362 ~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
..+++.+||++|+ |+++|++.|.++
T Consensus 133 --~~~v~~vSAk~g~----------gI~eL~~~I~~~ 157 (365)
T PRK13796 133 --PVDVVLISAQKGH----------GIDELLEAIEKY 157 (365)
T ss_pred --cCcEEEEECCCCC----------CHHHHHHHHHHh
Confidence 1148999999998 888888888654
No 463
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.76 E-value=0.003 Score=60.63 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=62.4
Q ss_pred eecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHHHHhh
Q psy1760 216 IAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILS 295 (793)
Q Consensus 216 iG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~~~l~ 295 (793)
.+..|+||||+.-.|....... +. ...+.|.... +-.+ .+.+.++|||+..+ ......+.
T Consensus 6 ~~kgg~gkt~~~~~~a~~~~~~---~~-~~~~vd~D~~----~~~~----------~yd~VIiD~p~~~~--~~~~~~l~ 65 (139)
T cd02038 6 SGKGGVGKTNISANLALALAKL---GK-RVLLLDADLG----LANL----------DYDYIIIDTGAGIS--DNVLDFFL 65 (139)
T ss_pred cCCCCCcHHHHHHHHHHHHHHC---CC-cEEEEECCCC----CCCC----------CCCEEEEECCCCCC--HHHHHHHH
Confidence 4578899999987775442111 00 0111222110 0001 16789999998643 44567899
Q ss_pred ccCcEEEEEeCCCCCCchhHHHHHHHHHc--CCccEEEEecccCC
Q psy1760 296 MVDNVLLLIDAVEGPMPQTRFVTRKALKL--GFKPIVVVNKIDRS 338 (793)
Q Consensus 296 ~aD~allVVDa~~g~~~qt~~~l~~~~~~--~ip~IvvINKiD~~ 338 (793)
.+|.+++++++...-...+...++.+... ..+..+++|+++..
T Consensus 66 ~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 66 AADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred hCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 99999999998754444445555555432 34557999999753
No 464
>PRK10867 signal recognition particle protein; Provisional
Probab=96.75 E-value=0.0038 Score=71.05 Aligned_cols=86 Identities=26% Similarity=0.341 Sum_probs=47.9
Q ss_pred cCeEEEEecCCCcccc----hHHHHHHh--hccCcEEEEEeCCCCCCchhHHHHHHHHHc--CCcc-EEEEecccCCCCC
Q psy1760 271 NGTRINIIDTPGHADF----GGEVERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKL--GFKP-IVVVNKIDRSNAR 341 (793)
Q Consensus 271 ~~~~i~iiDTPGh~df----~~ev~~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~--~ip~-IvvINKiD~~~a~ 341 (793)
.++.+.||||||.... ..++.... ...|.+++|+|+..| | ...+.+..+ .+++ -+++||+|.. ++
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q--~av~~a~~F~~~~~i~giIlTKlD~~-~r 255 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---Q--DAVNTAKAFNEALGLTGVILTKLDGD-AR 255 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---H--HHHHHHHHHHhhCCCCEEEEeCccCc-cc
Confidence 3578999999995432 22222222 246888999998754 2 222233322 2333 5788999963 22
Q ss_pred hhhhHhHHHHHHhhhcccccccCccEEEeecC
Q psy1760 342 PEWVVDATFDLFDKLCATEEQLDFPVIYTSAL 373 (793)
Q Consensus 342 ~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~ 373 (793)
...+++-. . ....|+.|++.-
T Consensus 256 gG~alsi~-~----------~~~~PI~fig~G 276 (433)
T PRK10867 256 GGAALSIR-A----------VTGKPIKFIGTG 276 (433)
T ss_pred ccHHHHHH-H----------HHCcCEEEEeCC
Confidence 22222211 1 124788888763
No 465
>PRK00098 GTPase RsgA; Reviewed
Probab=96.69 E-value=0.00099 Score=72.50 Aligned_cols=64 Identities=20% Similarity=0.251 Sum_probs=37.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCccc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d 285 (793)
..++++|++|+|||||+|+|++..... .+.+. ....+-+.+|.......+.. ...++||||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~--~g~v~------~~~~~G~htT~~~~~~~~~~---~~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELK--TGEIS------EALGRGKHTTTHVELYDLPG---GGLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCC--Cccee------ccCCCCCcccccEEEEEcCC---CcEEEECCCcCc
Confidence 357899999999999999998652211 11100 00112223444333333322 248999999874
No 466
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.67 E-value=0.0054 Score=67.30 Aligned_cols=138 Identities=20% Similarity=0.307 Sum_probs=71.0
Q ss_pred eeeeecccCCcceehhhhhhccCccccccccc----cccccchhhcccc-c-eEEeeeeeEEeec---------------
Q psy1760 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN----ARIMDSNEIEKER-G-ITIFSKNCSIEYN--------------- 271 (793)
Q Consensus 213 IaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~----~~~~D~~~~e~er-G-iTi~~~~~~~~~~--------------- 271 (793)
..+.|..|||||||+++|+...... +..-+. +.-.|....+... . .++......+...
T Consensus 7 ~iltGFLGaGKTTll~~ll~~~~~~-riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~~~~ 85 (318)
T PRK11537 7 TLLTGFLGAGKTTLLRHILNEQHGY-KIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLD 85 (318)
T ss_pred EEEEECCCCCHHHHHHHHHhcccCC-cccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHHHHh
Confidence 4678999999999999999653211 100000 1122332222111 0 1111111111111
Q ss_pred ----CeEEEEecCCCcccchHHHHHHhh--------ccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCC
Q psy1760 272 ----GTRINIIDTPGHADFGGEVERILS--------MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN 339 (793)
Q Consensus 272 ----~~~i~iiDTPGh~df~~ev~~~l~--------~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~ 339 (793)
.....+|.|-|.++-..-+...+. ..|+++-||||........... ....+....-+|++||+|+..
T Consensus 86 ~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~-~~~~Qi~~AD~IvlnK~Dl~~ 164 (318)
T PRK11537 86 KGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFT-IAQSQVGYADRILLTKTDVAG 164 (318)
T ss_pred ccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccH-HHHHHHHhCCEEEEeccccCC
Confidence 245689999999885544433211 2489999999986432111110 111122233489999999976
Q ss_pred CChhhhHhHHHHHHhhhc
Q psy1760 340 ARPEWVVDATFDLFDKLC 357 (793)
Q Consensus 340 a~~~~v~~~i~~~~~~l~ 357 (793)
+. +++.+.+..+.
T Consensus 165 ~~-----~~~~~~l~~ln 177 (318)
T PRK11537 165 EA-----EKLRERLARIN 177 (318)
T ss_pred HH-----HHHHHHHHHhC
Confidence 32 34555554444
No 467
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.67 E-value=0.0049 Score=69.75 Aligned_cols=169 Identities=22% Similarity=0.195 Sum_probs=82.4
Q ss_pred cceeeeecccCCcceehhhhhhccCcc---ccccccc-c--cc--ccc-hhhccccceEEeeeeeE-------EeecCeE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTF---RKNQNIN-A--RI--MDS-NEIEKERGITIFSKNCS-------IEYNGTR 274 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~---~~~~~v~-~--~~--~D~-~~~e~erGiTi~~~~~~-------~~~~~~~ 274 (793)
..++++|..|+||||++..|....... ...+.+. + ++ ++. ....+..|+........ ....+..
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d 271 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKH 271 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCC
Confidence 478999999999999999886542110 0000000 0 00 000 00111123322211111 1234678
Q ss_pred EEEecCCCcccchHHHHHH---hhc---cCcEEEEEeCCCCCCchhH-HHHHHHHHcCCccEEEEecccCCCCChhhhHh
Q psy1760 275 INIIDTPGHADFGGEVERI---LSM---VDNVLLLIDAVEGPMPQTR-FVTRKALKLGFKPIVVVNKIDRSNARPEWVVD 347 (793)
Q Consensus 275 i~iiDTPGh~df~~ev~~~---l~~---aD~allVVDa~~g~~~qt~-~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~ 347 (793)
+.+|||+|......+.... +.. .+-.+||+||+.+. ++. .+.......++ .=++++|+|-.. +.-.+++
T Consensus 272 ~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f~~~~~-~~~I~TKlDEt~-~~G~~l~ 347 (420)
T PRK14721 272 MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISAYQGHGI-HGCIITKVDEAA-SLGIALD 347 (420)
T ss_pred EEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHHhcCCCC-CEEEEEeeeCCC-CccHHHH
Confidence 9999999965543332222 222 34578999998542 222 12222222222 257899999754 3444444
Q ss_pred HHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 348 ATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 348 ~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
-+... ..|+.|++.= ..+.+. -...+-..|.+.+..
T Consensus 348 ~~~~~-----------~lPi~yvt~G--q~VP~D-l~~a~~~~lv~~ll~ 383 (420)
T PRK14721 348 AVIRR-----------KLVLHYVTNG--QKVPED-LHEANSRYLLHRIFK 383 (420)
T ss_pred HHHHh-----------CCCEEEEECC--CCchhh-hhhCCHHHHHHHHhc
Confidence 33322 4688888743 322110 012234556666654
No 468
>PRK10475 23S rRNA pseudouridine synthase F; Provisional
Probab=96.65 E-value=0.0044 Score=67.01 Aligned_cols=136 Identities=24% Similarity=0.263 Sum_probs=82.9
Q ss_pred eEEEeeCCCCCChHH-------HHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhc----cCCceEEEEEE
Q psy1760 11 VVIPKYKPYGLSSNN-------ALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLS----EADKYYEAIIH 79 (793)
Q Consensus 11 g~~~~~Kp~g~ts~~-------~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~----~~~K~Y~~~~~ 79 (793)
-+|++|||.|+.+|. ++..+.. ..++...|-||-..||||+++-... ++..|+ ...|+|.+++.
T Consensus 68 ~~lvlnKP~G~~~~~~~~~~~tv~~~l~~---~~~l~~VgRLDrdTsGLLLlT~dg~--~~~~L~~p~~~i~K~Y~v~V~ 142 (290)
T PRK10475 68 VLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGD--LVNKILRAGNDHEKEYLVTVD 142 (290)
T ss_pred eEEEEECCCCCCcCCCCCCCCcHHHHhhc---cccccccccCCCCCcceEEEecCHH--HHHHhhCcCCCCCeEEEEEEC
Confidence 478999999997763 4444432 2467899999999999999987665 334443 35899999875
Q ss_pred EceeeccCCCcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEE
Q psy1760 80 LGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITI 159 (793)
Q Consensus 80 ~g~~t~t~d~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~ 159 (793)
| +++++++++.. .| +.++|.. ..+..+. .
T Consensus 143 -g-------------------~~~~~~l~~l~---~G-----------v~l~~~~------------~~~~~v~-----~ 171 (290)
T PRK10475 143 -K-------------------PITDEFIRGMG---AG-----------VPILGTV------------TKKCKVK-----K 171 (290)
T ss_pred -C-------------------CCCHHHHHHHh---CC-----------cEECCEE------------ecceEEE-----e
Confidence 2 34666654221 11 1111110 0111111 1
Q ss_pred EeecCCceeeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhcccccccc
Q psy1760 160 IDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLD 210 (793)
Q Consensus 160 ~d~~~~~~~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le 210 (793)
+ ....+.+.+..++--.||-++..+|- .+..|+|+++|.+.++
T Consensus 172 ~--~~~~~~i~l~eGk~rqIRrm~~~~G~------~V~~L~R~~ig~l~L~ 214 (290)
T PRK10475 172 E--APFVFRITLVQGLNRQIRRMCEHFGY------EVTKLERTRIMNVSLS 214 (290)
T ss_pred c--CCcEEEEEEECCcCHHHHHHHHHcCC------EEeEEEEEEECCEEcC
Confidence 1 11234455566666788888877764 4567899999988654
No 469
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.57 E-value=0.0059 Score=69.48 Aligned_cols=63 Identities=32% Similarity=0.453 Sum_probs=37.7
Q ss_pred cCeEEEEecCCCcccchHHHHH----H--hhccCcEEEEEeCCCCCCchhHHHHHHHHHc--CCcc-EEEEecccCC
Q psy1760 271 NGTRINIIDTPGHADFGGEVER----I--LSMVDNVLLLIDAVEGPMPQTRFVTRKALKL--GFKP-IVVVNKIDRS 338 (793)
Q Consensus 271 ~~~~i~iiDTPGh~df~~ev~~----~--l~~aD~allVVDa~~g~~~qt~~~l~~~~~~--~ip~-IvvINKiD~~ 338 (793)
.++.+.|+||||.......... . ....|.++||+|+..+ | .....+..+ .+++ =+++||+|..
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q--~~~~~a~~f~~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---Q--DAVNTAKTFNERLGLTGVVLTKLDGD 252 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---H--HHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 3567999999996433222222 1 2347889999999754 2 222233322 2333 5779999963
No 470
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=96.53 E-value=0.014 Score=67.06 Aligned_cols=59 Identities=27% Similarity=0.334 Sum_probs=40.8
Q ss_pred cCCccEEEEecccCCC----------CChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHH
Q psy1760 324 LGFKPIVVVNKIDRSN----------ARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 393 (793)
Q Consensus 324 ~~ip~IvvINKiD~~~----------a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~ 393 (793)
+|+|++||++|.|... ..++.+..-++.++-.+|+. .||+|++... +++.|+.
T Consensus 195 lGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAs-------L~yts~~~~~----------n~~~L~~ 257 (472)
T PF05783_consen 195 LGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGAS-------LIYTSVKEEK----------NLDLLYK 257 (472)
T ss_pred cCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCe-------EEEeeccccc----------cHHHHHH
Confidence 4689999999999642 12344445555555555553 7899998875 7888888
Q ss_pred HHHhhc
Q psy1760 394 AILKYV 399 (793)
Q Consensus 394 ~I~~~l 399 (793)
+|...+
T Consensus 258 yi~h~l 263 (472)
T PF05783_consen 258 YILHRL 263 (472)
T ss_pred HHHHHh
Confidence 876655
No 471
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.51 E-value=0.0086 Score=64.06 Aligned_cols=146 Identities=17% Similarity=0.176 Sum_probs=74.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccch---------hhccccceEEeeeee---------EE-eec
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSN---------EIEKERGITIFSKNC---------SI-EYN 271 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~---------~~e~erGiTi~~~~~---------~~-~~~ 271 (793)
..++++|.+|+||||++..|...... ....+.-...|.. .....-|+.+..... .+ ...
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~--~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHG--KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 57899999999999999888654211 0000100000100 001111222211100 00 113
Q ss_pred CeEEEEecCCCcccch----HHHHHHhh--ccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhh
Q psy1760 272 GTRINIIDTPGHADFG----GEVERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWV 345 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~----~ev~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v 345 (793)
++.+.||||||..... .++...+. ..|-++||+||+.... +....++.....++ .=++++|+|... +.-.+
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~-d~~~~~~~f~~~~~-~~~I~TKlDet~-~~G~~ 230 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIHI-DGIVFTKFDETA-SSGEL 230 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH-HHHHHHHHhCCCCC-CEEEEEeecCCC-CccHH
Confidence 5789999999976432 33333332 3467899999875321 11222232222222 257899999864 34444
Q ss_pred HhHHHHHHhhhcccccccCccEEEeec
Q psy1760 346 VDATFDLFDKLCATEEQLDFPVIYTSA 372 (793)
Q Consensus 346 ~~~i~~~~~~l~~~~~~l~~Pvi~~SA 372 (793)
++-... ...|+.|++-
T Consensus 231 l~~~~~-----------~~~Pi~~it~ 246 (270)
T PRK06731 231 LKIPAV-----------SSAPIVLMTD 246 (270)
T ss_pred HHHHHH-----------HCcCEEEEeC
Confidence 443322 2468888874
No 472
>TIGR01621 RluA-like pseudouridine synthase Rlu family protein, TIGR01621. This model represents a clade of sequences within the pseudouridine synthase superfamily (pfam00849). The superfamily includes E. coli proteins: RluA, RluB, RluC, RluD, and RsuA. The sequences modeled here are most closely related to RluA. Neisseria, among those species hitting this model, does not appear to have an RluA homolog. It is presumed that these sequences function as pseudouridine synthases, although perhaps with different specificity.
Probab=96.51 E-value=0.003 Score=65.53 Aligned_cols=71 Identities=21% Similarity=0.285 Sum_probs=55.7
Q ss_pred cceEEEeeCCCCCChH------HHHHHHHHHhccccccCCCCCCCCCcceeeeeecccc--cccchhcc--CCceEEEEE
Q psy1760 9 VSVVIPKYKPYGLSSN------NALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEAT--KFSNYLSE--ADKYYEAII 78 (793)
Q Consensus 9 ~~g~~~~~Kp~g~ts~------~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~t--k~~~~~~~--~~K~Y~~~~ 78 (793)
...+|+||||.|+.+| .+...+...++..++...|-||-..||+|++|-...+ ++...+.+ ..|+|.|.+
T Consensus 8 d~~~lvvnKP~Gl~v~~~~~~~~l~~~l~~~~~~~~~~~VhRLDr~TSGlll~Ak~~~~~~~L~~~~~~~~v~K~YlAlV 87 (217)
T TIGR01621 8 HPDFLLINKHPGISVHKDDGETGLLQEVATQLGVGQVWLVHRLDKMTSGILLLALNAESASELSQGFAKRKIEKTYLALS 87 (217)
T ss_pred CCCEEEEECCCCCeECCCCCcChHHHHHHHhcCCCCccEecCCCCCCceEEEEEcCHHHHHHHHHHHhcCCccEEEEEEE
Confidence 3567999999999886 5566666655656899999999999999999988763 25544544 469999999
Q ss_pred E
Q psy1760 79 H 79 (793)
Q Consensus 79 ~ 79 (793)
.
T Consensus 88 ~ 88 (217)
T TIGR01621 88 S 88 (217)
T ss_pred e
Confidence 7
No 473
>PRK10158 23S rRNA/tRNA pseudouridine synthase A; Provisional
Probab=96.51 E-value=0.0029 Score=65.71 Aligned_cols=71 Identities=21% Similarity=0.290 Sum_probs=56.0
Q ss_pred cceEEEeeCCCCCChH---------HHHHHHHHHhccccccCCCCCCCCCcceeeeeeccccc--ccchhcc--CCceEE
Q psy1760 9 VSVVIPKYKPYGLSSN---------NALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATK--FSNYLSE--ADKYYE 75 (793)
Q Consensus 9 ~~g~~~~~Kp~g~ts~---------~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk--~~~~~~~--~~K~Y~ 75 (793)
...+++||||.|+.+| .+...+++.+ .+++..|-||-..||||++|..+... +...+.+ ..|+|.
T Consensus 20 d~~~lvvnKPaGl~~~~~~~~~~~~sl~~~l~~~~--~~~~~vhRLDr~TSGlll~Akt~~~~~~l~~~f~~~~v~K~Yl 97 (219)
T PRK10158 20 DEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY--PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYV 97 (219)
T ss_pred CCCEEEEECCCCCcEeCCCCCccchhHHHHHHHhC--CCCCEECCCCCCCceEEEEECCHHHHHHHHHHHHhCCccEEEE
Confidence 4567899999999765 2455555443 36889999999999999999998876 7777765 569999
Q ss_pred EEEEEce
Q psy1760 76 AIIHLGI 82 (793)
Q Consensus 76 ~~~~~g~ 82 (793)
|.+. |.
T Consensus 98 a~v~-G~ 103 (219)
T PRK10158 98 ARVW-GH 103 (219)
T ss_pred EEEe-cc
Confidence 9987 53
No 474
>cd02558 PSRA_1 PSRA_1: Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.
Probab=96.45 E-value=0.004 Score=65.90 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=57.0
Q ss_pred ceEEEeeCCCCCChH--------HHHHHHHHHhccccccCCCCCCCCCcceeeeeeccccc--ccchhcc--CCceEEEE
Q psy1760 10 SVVIPKYKPYGLSSN--------NALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATK--FSNYLSE--ADKYYEAI 77 (793)
Q Consensus 10 ~g~~~~~Kp~g~ts~--------~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk--~~~~~~~--~~K~Y~~~ 77 (793)
.-+++||||+|+.+| .++.+++..++..++...+-||-..||+|++|-..... +...+.. ..|+|.|.
T Consensus 46 ~~~lvvnKPaGl~~~~~~~~~~~t~~~~l~~~~~~~~~~~vhRLD~~TSGlll~Ak~~~~~~~l~~~~~~~~v~K~YlA~ 125 (246)
T cd02558 46 EHLLVADKPHFLPVTPRGRYVTETLLVRLRRQTGNPDLTPAHRLDRLTAGLVLFSKRPETRGAYQTLFARREVSKTYEAV 125 (246)
T ss_pred CCEEEEECCCCCccCCCCcchhhhHHHHHHHHhCCCcccccccCCCCceeEEEEEcCHHHHHHHHHHHHcCCccEEEEEE
Confidence 567899999999996 36788887777667888999999999999999887643 5454444 57999999
Q ss_pred EE
Q psy1760 78 IH 79 (793)
Q Consensus 78 ~~ 79 (793)
+.
T Consensus 126 v~ 127 (246)
T cd02558 126 AP 127 (246)
T ss_pred Ee
Confidence 96
No 475
>cd02557 PseudoU_synth_ScRIB2 PseudoU_synth_ScRIB2_like: Pseudouridine synthase, Saccharomyces cerevisiae RIB2_like. This group is comprised of eukaryotic and bacterial proteins similar to Saccharomyces cerevisiae RIB2, S. cerevisiae Pus6p and human hRPUDSD2. S. cerevisiae RIB2 displays two distinct catalytic activities. The N-terminal domain of RIB2 is RNA:psi-synthase which makes psi32 on cytoplasmic tRNAs. Psi32 is highly phylogenetically conserved. The C-terminal domain of RIB2 has a DRAP deaminase activity which catalyses the formation of 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione 5'-phosphate from 2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate during riboflavin biosynthesis. S. cerevisiae Pus6p makes the psi31 of cytoplasmic and mitochondrial tRNAs.
Probab=96.44 E-value=0.004 Score=64.35 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=56.6
Q ss_pred cceEEEeeCCCCCChH--------HHHHHHHHHhccccccCCCCCCCCCcceeeeeeccc--ccccchhcc--CCceEEE
Q psy1760 9 VSVVIPKYKPYGLSSN--------NALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEA--TKFSNYLSE--ADKYYEA 76 (793)
Q Consensus 9 ~~g~~~~~Kp~g~ts~--------~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~--tk~~~~~~~--~~K~Y~~ 76 (793)
...+|+||||.|+-++ .+...+++.++..++...|-||-..||+|++|-... .++...+.+ ..|+|.|
T Consensus 22 d~~~ivvnKP~Gl~~~~~~~~~~~sl~~~l~~~~~~~~~~~vhRLD~~TSGllllak~~~~~~~l~~~f~~~~v~K~Y~a 101 (213)
T cd02557 22 DDDLLVVDKPSGIPVHPTGRYRYNTVTEILKSEYGLTELRPCHRLDRLTSGLLLFAKTSQTASRLQQQIRSREVKKEYLA 101 (213)
T ss_pred CCCEEEEECCCCCcCCCCCCCCcChHHHHHHHHcCCCCccCccCCCCCCceEEEEECCHHHHHHHHHHHHcCCccEEEEE
Confidence 4567899999999764 477888877766678999999999999999998774 345555444 5799999
Q ss_pred EEE
Q psy1760 77 IIH 79 (793)
Q Consensus 77 ~~~ 79 (793)
.+.
T Consensus 102 ~v~ 104 (213)
T cd02557 102 RVK 104 (213)
T ss_pred EEe
Confidence 987
No 476
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.42 E-value=0.01 Score=68.33 Aligned_cols=169 Identities=20% Similarity=0.175 Sum_probs=81.9
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccch---------hhccccceEEeeeee-------EEeecCeEE
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSN---------EIEKERGITIFSKNC-------SIEYNGTRI 275 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~---------~~e~erGiTi~~~~~-------~~~~~~~~i 275 (793)
-++++|+.|+||||++..|............+.--..|.. ...+..|+....... .....++.+
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~ 337 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKHI 337 (484)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCCe
Confidence 5799999999999999988754211000001100000110 001122332211111 122346679
Q ss_pred EEecCCCcccchHHHHHHhhc-c-----CcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHH
Q psy1760 276 NIIDTPGHADFGGEVERILSM-V-----DNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDAT 349 (793)
Q Consensus 276 ~iiDTPGh~df~~ev~~~l~~-a-----D~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i 349 (793)
.+|||+|.......+...+.. . .-.+||+|+..+.. .....++.....+ ..-+++||+|-.. +...+++-+
T Consensus 338 VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~-~l~~i~~~f~~~~-~~g~IlTKlDet~-~~G~~l~i~ 414 (484)
T PRK06995 338 VLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGD-TLNEVVQAYRGPG-LAGCILTKLDEAA-SLGGALDVV 414 (484)
T ss_pred EEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHH-HHHHHHHHhccCC-CCEEEEeCCCCcc-cchHHHHHH
Confidence 999999954332222222221 1 22689999976431 1112222222222 2356789999753 334444333
Q ss_pred HHHHhhhcccccccCccEEEeecCCCCcc-cccccccCCchhhHHHHHhh
Q psy1760 350 FDLFDKLCATEEQLDFPVIYTSALHGYAN-ENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 350 ~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~-~~~~~~~~gi~~Ll~~I~~~ 398 (793)
... ..|+.|++. |..+ +++ ...+-+.|.+.+...
T Consensus 415 ~~~-----------~lPI~yvt~--GQ~VPeDL--~~a~~~~lv~~ll~~ 449 (484)
T PRK06995 415 IRY-----------KLPLHYVSN--GQRVPEDL--HLANKKFLLHRAFCA 449 (484)
T ss_pred HHH-----------CCCeEEEec--CCCChhhh--ccCCHHHHHHHHhcC
Confidence 222 468888874 4333 221 122445677776653
No 477
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.29 E-value=0.023 Score=62.41 Aligned_cols=90 Identities=24% Similarity=0.262 Sum_probs=57.4
Q ss_pred CeEEEEecCCCcccchHHHHHHhh--------ccCcEEEEEeCCCCCCchh---HHHHHHHHHcCCccEEEEecccCCCC
Q psy1760 272 GTRINIIDTPGHADFGGEVERILS--------MVDNVLLLIDAVEGPMPQT---RFVTRKALKLGFKPIVVVNKIDRSNA 340 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~ev~~~l~--------~aD~allVVDa~~g~~~qt---~~~l~~~~~~~ip~IvvINKiD~~~a 340 (793)
+....+|.|-|.++=..-+..... ..|++|-||||........ .....++. ..-++++||+|+.++
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia---~AD~ivlNK~Dlv~~ 160 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA---FADVIVLNKTDLVDA 160 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH---hCcEEEEecccCCCH
Confidence 356889999999886555444332 3588999999987543322 12222222 233899999999874
Q ss_pred ChhhhHhHHHHHHhhhcccccccCccEEEeec
Q psy1760 341 RPEWVVDATFDLFDKLCATEEQLDFPVIYTSA 372 (793)
Q Consensus 341 ~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA 372 (793)
. .++.+++.+.++... .+++.+|.
T Consensus 161 ~---~l~~l~~~l~~lnp~-----A~i~~~~~ 184 (323)
T COG0523 161 E---ELEALEARLRKLNPR-----ARIIETSY 184 (323)
T ss_pred H---HHHHHHHHHHHhCCC-----CeEEEccc
Confidence 3 266666666666543 45777766
No 478
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.0049 Score=74.15 Aligned_cols=169 Identities=18% Similarity=0.182 Sum_probs=81.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccch---------hhccccceEEeeeee--E-----EeecCeE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSN---------EIEKERGITIFSKNC--S-----IEYNGTR 274 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~---------~~e~erGiTi~~~~~--~-----~~~~~~~ 274 (793)
.-++++|+.|+||||++..|............+.-...|.. ......|+.+..... . -...++.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 35799999999999999988754211100001100000100 000112222211000 0 0123668
Q ss_pred EEEecCCCcccchHHHHHHhh------ccCcEEEEEeCCCCCCchhH-HHHHHHHHc-CCc-cEEEEecccCCCCChhhh
Q psy1760 275 INIIDTPGHADFGGEVERILS------MVDNVLLLIDAVEGPMPQTR-FVTRKALKL-GFK-PIVVVNKIDRSNARPEWV 345 (793)
Q Consensus 275 i~iiDTPGh~df~~ev~~~l~------~aD~allVVDa~~g~~~qt~-~~l~~~~~~-~ip-~IvvINKiD~~~a~~~~v 345 (793)
+.||||||......++...+. ..+-.+||+|++.+ .+.. ++.+..... +.+ .=++++|+|-.. +.-.+
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~-~~G~i 342 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGEDVDGCIITKLDEAT-HLGPA 342 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCCCCEEEEeccCCCC-CccHH
Confidence 999999994333223322222 24568999999853 1211 122222211 112 257899999754 34444
Q ss_pred HhHHHHHHhhhcccccccCccEEEeecCCCCcc-cccccccCCchhhHHHHHh
Q psy1760 346 VDATFDLFDKLCATEEQLDFPVIYTSALHGYAN-ENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 346 ~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~-~~~~~~~~gi~~Ll~~I~~ 397 (793)
++-+... ..|+.|++. |.++ +++ ...+-+.|.+.+..
T Consensus 343 L~i~~~~-----------~lPI~yit~--GQ~VPdDL--~~a~~~~lv~~ll~ 380 (767)
T PRK14723 343 LDTVIRH-----------RLPVHYVST--GQKVPEHL--ELAQADELVDRAFA 380 (767)
T ss_pred HHHHHHH-----------CCCeEEEec--CCCChhhc--ccCCHHHHHHHHhc
Confidence 4433222 468888874 4333 121 12244566666654
No 479
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.0083 Score=67.57 Aligned_cols=148 Identities=16% Similarity=0.195 Sum_probs=73.7
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccch---------hhccccceEEeee------eeEEeecCeEEE
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSN---------EIEKERGITIFSK------NCSIEYNGTRIN 276 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~---------~~e~erGiTi~~~------~~~~~~~~~~i~ 276 (793)
-++++|++|+||||++..|...... .....+.-...|.. ......|+..... ...+.-.++.+.
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~-~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFL-HMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-hcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 4789999999999999998753210 00000100000110 0001112211110 000011367889
Q ss_pred EecCCCcccch----HHHHHHhhc-----cCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHh
Q psy1760 277 IIDTPGHADFG----GEVERILSM-----VDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVD 347 (793)
Q Consensus 277 iiDTPGh~df~----~ev~~~l~~-----aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~ 347 (793)
||||||..... .++...+.. ..-.+||+||+.+... .....+.....++ .=++++|+|-. ++.-.+++
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~-~~~~~~~f~~~~~-~glIlTKLDEt-~~~G~il~ 380 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHH-TLTVLKAYESLNY-RRILLTKLDEA-DFLGSFLE 380 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHH-HHHHHHHhcCCCC-CEEEEEcccCC-CCccHHHH
Confidence 99999975322 223333332 2358899999876322 1222222222332 25788999975 33444444
Q ss_pred HHHHHHhhhcccccccCccEEEeecCC
Q psy1760 348 ATFDLFDKLCATEEQLDFPVIYTSALH 374 (793)
Q Consensus 348 ~i~~~~~~l~~~~~~l~~Pvi~~SA~~ 374 (793)
-.... ..|+.|++.=.
T Consensus 381 i~~~~-----------~lPI~ylt~GQ 396 (432)
T PRK12724 381 LADTY-----------SKSFTYLSVGQ 396 (432)
T ss_pred HHHHH-----------CCCEEEEecCC
Confidence 33222 56888887543
No 480
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.24 E-value=0.016 Score=62.24 Aligned_cols=82 Identities=22% Similarity=0.352 Sum_probs=58.2
Q ss_pred ccCcEEEEEeCCCCCCc--hhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEeecC
Q psy1760 296 MVDNVLLLIDAVEGPMP--QTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSAL 373 (793)
Q Consensus 296 ~aD~allVVDa~~g~~~--qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~ 373 (793)
..|-+++|+.+.++... +....+-.+...|+.+++|+||+|+.+...... ++....+. .+.++++.+|++
T Consensus 79 n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~-~~~~~~y~-------~~gy~v~~~s~~ 150 (301)
T COG1162 79 NNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAV-KELLREYE-------DIGYPVLFVSAK 150 (301)
T ss_pred ccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHH-HHHHHHHH-------hCCeeEEEecCc
Confidence 37888999998876443 334567777889999999999999986432222 33333332 346789999999
Q ss_pred CCCcccccccccCCchhhHHHH
Q psy1760 374 HGYANENSKARQGNMIPLFEAI 395 (793)
Q Consensus 374 ~g~~~~~~~~~~~gi~~Ll~~I 395 (793)
++. +++.|.+.+
T Consensus 151 ~~~----------~~~~l~~~l 162 (301)
T COG1162 151 NGD----------GLEELAELL 162 (301)
T ss_pred Ccc----------cHHHHHHHh
Confidence 997 777777766
No 481
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.21 E-value=0.0068 Score=60.75 Aligned_cols=84 Identities=19% Similarity=0.197 Sum_probs=44.7
Q ss_pred CeEEEEecCCCcccchHHH-----HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhH
Q psy1760 272 GTRINIIDTPGHADFGGEV-----ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVV 346 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~ev-----~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~ 346 (793)
+....||.|.|..+...-+ ....-..+.+|.|+||..-....... .....+...--++++||+|+.+.. +.+
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~-~~~~~Qi~~ADvIvlnK~D~~~~~--~~i 160 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIP-ELLREQIAFADVIVLNKIDLVSDE--QKI 160 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHC-HHHHHHHCT-SEEEEE-GGGHHHH----H
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccch-hhhhhcchhcCEEEEeccccCChh--hHH
Confidence 3468899999976654431 11133468999999996531111111 111223344459999999997532 233
Q ss_pred hHHHHHHhhhcc
Q psy1760 347 DATFDLFDKLCA 358 (793)
Q Consensus 347 ~~i~~~~~~l~~ 358 (793)
+.+++.+.++..
T Consensus 161 ~~~~~~ir~lnp 172 (178)
T PF02492_consen 161 ERVREMIRELNP 172 (178)
T ss_dssp HHHHHHHHHH-T
T ss_pred HHHHHHHHHHCC
Confidence 555555555443
No 482
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.15 E-value=0.0087 Score=66.58 Aligned_cols=146 Identities=16% Similarity=0.299 Sum_probs=76.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchh---hcc------ccceEEeeeeeEE-------eecCeE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNE---IEK------ERGITIFSKNCSI-------EYNGTR 274 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~---~e~------erGiTi~~~~~~~-------~~~~~~ 274 (793)
+.|+++|+.|+||||-+-.|............+.--.+|... +|+ .-|+.+......- .+.++.
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d 283 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCD 283 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCC
Confidence 678999999999999888887654422222222211112111 111 1133332221111 123678
Q ss_pred EEEecCCCcccc----hHHHHHHhhcc--CcEEEEEeCCCCCCchhHHHHHHHHHcC-Ccc-EEEEecccCCCCChhhhH
Q psy1760 275 INIIDTPGHADF----GGEVERILSMV--DNVLLLIDAVEGPMPQTRFVTRKALKLG-FKP-IVVVNKIDRSNARPEWVV 346 (793)
Q Consensus 275 i~iiDTPGh~df----~~ev~~~l~~a--D~allVVDa~~g~~~qt~~~l~~~~~~~-ip~-IvvINKiD~~~a~~~~v~ 346 (793)
+.||||.|+.-. ..++...++.+ .-.-||++|+. +...+-.....++ +|+ =++++|+|-... +...+
T Consensus 284 ~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~----K~~dlkei~~~f~~~~i~~~I~TKlDET~s-~G~~~ 358 (407)
T COG1419 284 VILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT----KYEDLKEIIKQFSLFPIDGLIFTKLDETTS-LGNLF 358 (407)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc----chHHHHHHHHHhccCCcceeEEEcccccCc-hhHHH
Confidence 999999996533 33444444443 44667888864 2222223333332 233 477899997542 33333
Q ss_pred hHHHHHHhhhcccccccCccEEEeec
Q psy1760 347 DATFDLFDKLCATEEQLDFPVIYTSA 372 (793)
Q Consensus 347 ~~i~~~~~~l~~~~~~l~~Pvi~~SA 372 (793)
+-+.+. ..||-|++-
T Consensus 359 s~~~e~-----------~~PV~YvT~ 373 (407)
T COG1419 359 SLMYET-----------RLPVSYVTN 373 (407)
T ss_pred HHHHHh-----------CCCeEEEeC
Confidence 322221 467888773
No 483
>cd02563 PseudoU_synth_TruC tRNA pseudouridine isomerase C: Pseudouridine synthases catalyze the isomerization of specific uridines in an tRNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. TruC makes psi65 in tRNAs. This psi residue is not universally conserved.
Probab=96.12 E-value=0.007 Score=63.05 Aligned_cols=72 Identities=24% Similarity=0.373 Sum_probs=52.3
Q ss_pred cceEEEeeCCCCCChHH----------HHHHHHHHhccccccCCCCCCCCCcceeeeeeccc-cc-ccchhcc--CCceE
Q psy1760 9 VSVVIPKYKPYGLSSNN----------ALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEA-TK-FSNYLSE--ADKYY 74 (793)
Q Consensus 9 ~~g~~~~~Kp~g~ts~~----------~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~-tk-~~~~~~~--~~K~Y 74 (793)
.+.+|+||||.|+.+|. ++..+++.++ .++...+-||...||||++|-.+. .+ +...+.+ ..|+|
T Consensus 7 d~~~lvvnKP~G~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~vhRLD~~TSGlll~Ak~~~~~~~l~~~f~~~~v~K~Y 85 (223)
T cd02563 7 DEHLVAINKPSGLLVHRSELDRHETRFALQTLRDQLG-QHVYPVHRLDRPTSGVLLFALSSEVARKLGEQFTEHRVHKTY 85 (223)
T ss_pred cCCEEEEECCCCCeEcCCCCCCCCcHHHHHHHHHHcC-CCcccccCCCCCCeEEEEEEECHHHHHHHHHHHhcCceeEEE
Confidence 45689999999997752 3344555444 468899999999999999997665 23 4443443 46999
Q ss_pred EEEEEEce
Q psy1760 75 EAIIHLGI 82 (793)
Q Consensus 75 ~~~~~~g~ 82 (793)
.|.+. |.
T Consensus 86 ~alv~-G~ 92 (223)
T cd02563 86 LAVVR-GY 92 (223)
T ss_pred EEEEE-Cc
Confidence 99986 53
No 484
>KOG3887|consensus
Probab=96.09 E-value=0.014 Score=59.86 Aligned_cols=134 Identities=18% Similarity=0.150 Sum_probs=81.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH-
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE- 289 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e- 289 (793)
.+|.++|+--+|||++....+++.. +.. ..-+|....+|.+-...+ =..+.+||-||+.+|-..
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMs------Pne-----TlflESTski~~d~is~s----finf~v~dfPGQ~~~Fd~s 92 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMS------PNE-----TLFLESTSKITRDHISNS----FINFQVWDFPGQMDFFDPS 92 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccC------CCc-----eeEeeccCcccHhhhhhh----hcceEEeecCCccccCCCc
Confidence 4689999999999999877665421 111 111222222332211111 145789999999876433
Q ss_pred --HHHHhhccCcEEEEEeCCCCC-CchhHHHHHHHHHcCC----ccEEEEecccCCCCCh-----hhhHhHHHHHHhhhc
Q psy1760 290 --VERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALKLGF----KPIVVVNKIDRSNARP-----EWVVDATFDLFDKLC 357 (793)
Q Consensus 290 --v~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~~~i----p~IvvINKiD~~~a~~-----~~v~~~i~~~~~~l~ 357 (793)
-+...+.+-+.|+|+||.+.. .+-++.+...++.+.+ .+=|+|.|.|-...++ ..+.++..+.+.+.+
T Consensus 93 ~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~g 172 (347)
T KOG3887|consen 93 FDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAG 172 (347)
T ss_pred cCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhh
Confidence 467789999999999998754 3556666666666654 3458899999765432 123334444444555
Q ss_pred cc
Q psy1760 358 AT 359 (793)
Q Consensus 358 ~~ 359 (793)
..
T Consensus 173 le 174 (347)
T KOG3887|consen 173 LE 174 (347)
T ss_pred hc
Confidence 43
No 485
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.04 E-value=0.013 Score=53.64 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=44.6
Q ss_pred EEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCc----cEEEEec
Q psy1760 274 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK----PIVVVNK 334 (793)
Q Consensus 274 ~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip----~IvvINK 334 (793)
.+.|+|||+..+. .....+..+|.+++++++...-...+...++.+.+.+.+ ..+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7899999997543 455688999999999998876566666777777666543 4578885
No 486
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.02 E-value=0.019 Score=64.59 Aligned_cols=148 Identities=17% Similarity=0.225 Sum_probs=76.1
Q ss_pred cceeeeecccCCcceehhhhhhccCcc--ccccccccccccc---------hhhccccceEEeeeeeE-------EeecC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTF--RKNQNINARIMDS---------NEIEKERGITIFSKNCS-------IEYNG 272 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~--~~~~~v~~~~~D~---------~~~e~erGiTi~~~~~~-------~~~~~ 272 (793)
..++++|++|+||||.+..|....... .....+.--..|. ......-|+.+...... -...+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~~ 254 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKD 254 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhCC
Confidence 478999999999999998886432110 0001111000010 00011112222111100 01247
Q ss_pred eEEEEecCCCcccc----hHHHHHHhhcc--C-cEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhh
Q psy1760 273 TRINIIDTPGHADF----GGEVERILSMV--D-NVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWV 345 (793)
Q Consensus 273 ~~i~iiDTPGh~df----~~ev~~~l~~a--D-~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v 345 (793)
+.+.||||||..-. ..++.+.+..+ + -.+||+||+.+.... ...+......+ +.=++++|+|-.. +.-.+
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~-~~~~~~~~~~~-~~~~I~TKlDet~-~~G~~ 331 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV-KEIFHQFSPFS-YKTVIFTKLDETT-CVGNL 331 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH-HHHHHHhcCCC-CCEEEEEeccCCC-cchHH
Confidence 88999999996432 23444455543 3 588999998863222 23333332222 2367899999753 34444
Q ss_pred HhHHHHHHhhhcccccccCccEEEeec
Q psy1760 346 VDATFDLFDKLCATEEQLDFPVIYTSA 372 (793)
Q Consensus 346 ~~~i~~~~~~l~~~~~~l~~Pvi~~SA 372 (793)
++-+... ..|+.|++.
T Consensus 332 l~~~~~~-----------~~Pi~yit~ 347 (388)
T PRK12723 332 ISLIYEM-----------RKEVSYVTD 347 (388)
T ss_pred HHHHHHH-----------CCCEEEEeC
Confidence 4433222 467888764
No 487
>PRK10700 23S rRNA pseudouridylate synthase B; Provisional
Probab=95.91 E-value=0.018 Score=62.40 Aligned_cols=66 Identities=23% Similarity=0.329 Sum_probs=46.5
Q ss_pred eEEEeeCCCCCChH--------HHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhcc----CCceEEEEE
Q psy1760 11 VVIPKYKPYGLSSN--------NALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSE----ADKYYEAII 78 (793)
Q Consensus 11 g~~~~~Kp~g~ts~--------~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~----~~K~Y~~~~ 78 (793)
-+|++|||+|+-++ .++..+.+. ...+....|-||=..||||+++-... ++..|+. ..|+|.|++
T Consensus 68 ~ylvlnKP~G~~~s~~d~~~~~tv~d~l~~~-~~~~~~~VgRLD~dTsGLLLlTndg~--~~~~L~~p~~~i~K~Y~v~V 144 (289)
T PRK10700 68 RVLAYYKPEGELCTRNDPEGRPTVFDRLPKL-RGARWIAVGRLDVNTCGLLLFTTDGE--LANRLMHPSREVEREYAVRV 144 (289)
T ss_pred eEEEEECCCCCEeecCCCCCCccHHHHhhhh-cCCceeEccCCCCCCceEEEEEcCHH--HHHHHhCccCCCCeEEEEEE
Confidence 47899999998554 255556542 22356789999999999999875433 3333332 579999988
Q ss_pred E
Q psy1760 79 H 79 (793)
Q Consensus 79 ~ 79 (793)
.
T Consensus 145 ~ 145 (289)
T PRK10700 145 F 145 (289)
T ss_pred c
Confidence 4
No 488
>cd02566 PseudoU_synth_RluE PseudoU_synth_RluE: Pseudouridine synthase, Escherichia coli RluE. This group is comprised of bacterial proteins similar to E. coli RluE. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. Escherichia coli RluE makes psi2457 in 23S RNA. psi2457 is not universally conserved.
Probab=95.89 E-value=0.0045 Score=61.56 Aligned_cols=66 Identities=27% Similarity=0.343 Sum_probs=48.0
Q ss_pred EEEeeCCCCCChHH-----HHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhcc----CCceEEEEEE
Q psy1760 12 VIPKYKPYGLSSNN-----ALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSE----ADKYYEAIIH 79 (793)
Q Consensus 12 ~~~~~Kp~g~ts~~-----~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~----~~K~Y~~~~~ 79 (793)
+|++|||+|+-|+. --..+...+..++....|-||-..||||+++-.. ++...|.+ ..|+|.|.+.
T Consensus 1 ~lv~nKP~G~~~~~~~~~~~~~~l~~~l~~~~~~~v~RLD~~TsGlll~a~d~--~~~~~l~~~~~~v~K~Y~a~v~ 75 (168)
T cd02566 1 LILFNKPYGVLSQFTDESEKHKTLKDYIDDPGVYAAGRLDRDSEGLLLLTDDG--RLQHRITDPSFKHPKTYYVQVE 75 (168)
T ss_pred CEEEECCCCCEEecCCCcCCCccHHHHcCcCCeEEccCCCCCCeEEEEEEeCH--HHHHHHHCCCCCCCEEEEEEEC
Confidence 47899999996661 1123444444457889999999999999999776 35555544 5799999884
No 489
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=95.81 E-value=0.031 Score=62.02 Aligned_cols=80 Identities=19% Similarity=0.110 Sum_probs=46.5
Q ss_pred eEEEEecCCCcccchHHHHHH-------hhccCcEEEEEeCCCCCCch--------------------hHHHHHH-HHHc
Q psy1760 273 TRINIIDTPGHADFGGEVERI-------LSMVDNVLLLIDAVEGPMPQ--------------------TRFVTRK-ALKL 324 (793)
Q Consensus 273 ~~i~iiDTPGh~df~~ev~~~-------l~~aD~allVVDa~~g~~~q--------------------t~~~l~~-~~~~ 324 (793)
....+|.|.|.++...-+... .-..|++|-||||....... ...+... ..+.
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 467899999998866554432 12458899999997532100 0000111 1222
Q ss_pred CCccEEEEecccCCCCChhhhHhHHHHHHhh
Q psy1760 325 GFKPIVVVNKIDRSNARPEWVVDATFDLFDK 355 (793)
Q Consensus 325 ~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~ 355 (793)
...-+|++||+|+.++ +.++++++.+..
T Consensus 173 ~~AD~IvlnK~Dl~~~---~~l~~~~~~l~~ 200 (341)
T TIGR02475 173 ACADLVILNKADLLDA---AGLARVRAEIAA 200 (341)
T ss_pred HhCCEEEEeccccCCH---HHHHHHHHHHHH
Confidence 2334999999999763 334445555444
No 490
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.80 E-value=0.025 Score=56.51 Aligned_cols=42 Identities=26% Similarity=0.179 Sum_probs=34.0
Q ss_pred CcEEEEEeCCCCCCchhHHHHHH--HHHcCCccEEEEecccCCC
Q psy1760 298 DNVLLLIDAVEGPMPQTRFVTRK--ALKLGFKPIVVVNKIDRSN 339 (793)
Q Consensus 298 D~allVVDa~~g~~~qt~~~l~~--~~~~~ip~IvvINKiD~~~ 339 (793)
|++++|+||..........+.+. +...+.|.|+|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 78999999998877766666666 3445789999999999964
No 491
>cd02550 PseudoU_synth_Rsu_Rlu_like PseudoU_synth_Rsu_Rlu: Pseudouridine synthase, Rsu/Rlu family. This group is comprised of eukaryotic, bacterial and archeal proteins similar to eight site specific Escherichia coli pseudouridine synthases: RsuA, RluA, RluB, RluC, RluD, RluE, RluF and TruA. Pseudouridine synthases catalyze the isomerization of specific uridines in a n RNA molecule to pseudouridines (5-ribosyluracil, psi) requiring no cofactors. E. coli RluC for example makes psi955, 2504 and 2580 in 23S RNA. Some psi sites such as psi1917 in 23S RNA made by RluD are universally conserved. Other psi sites occur in a more restricted fashion, for example psi2819 in 21S mitochondrial ribosomal RNA made by S. cerevisiae Pus5p is only found in mitochondrial large subunit rRNAs from some other species and in gram negative bacteria. The E. coli counterpart of this psi residue is psi2580 in 23S rRNA. psi2604in 23S RNA made by RluF has only been detected in E.coli.
Probab=95.59 E-value=0.011 Score=57.95 Aligned_cols=68 Identities=25% Similarity=0.376 Sum_probs=49.0
Q ss_pred EEEeeCCCCCChHH--------HHHHHHHHhccccccCCCCCCCCCcceeeeeecccc--cccchhccCCceEEEEEEEc
Q psy1760 12 VIPKYKPYGLSSNN--------ALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEAT--KFSNYLSEADKYYEAIIHLG 81 (793)
Q Consensus 12 ~~~~~Kp~g~ts~~--------~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~t--k~~~~~~~~~K~Y~~~~~~g 81 (793)
+|++|||.|+.+|. +...+.+. ...++.-.|-||-..||||++|-.... ++...-....|+|.|.+. |
T Consensus 1 ~ivvnKP~G~~~~~~~~~~~~~~~~~l~~~-~~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~v~K~Y~a~v~-g 78 (154)
T cd02550 1 ILVLNKPSGLVCHPTDRDRDPTVVVRLDKL-HGPRVHAAGRLDKDTSGLLLLTNDGRLQRRLTEPRREIEKEYLVTVR-G 78 (154)
T ss_pred CEEEECCCCCEEecCCCCCCCcHHHhhhcc-cCCceeEeccCCCCCeeEEEEEcCHHHHHHHhhhhccCcEEEEEEEE-e
Confidence 47899999987662 33333322 235788999999999999999987763 344333347899999986 5
No 492
>COG0564 RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]
Probab=95.59 E-value=0.018 Score=62.32 Aligned_cols=73 Identities=22% Similarity=0.300 Sum_probs=59.6
Q ss_pred ceEEEeeCCCCCCh--------HHHHHHHHHHhc--cccccCCCCCCCCCcceeeeeecc--cccccchhccC--CceEE
Q psy1760 10 SVVIPKYKPYGLSS--------NNALKKIKYLLN--AKKVGYTGTLDPFATGLLPLCFGE--ATKFSNYLSEA--DKYYE 75 (793)
Q Consensus 10 ~g~~~~~Kp~g~ts--------~~~v~~~~~~~~--~~k~gh~gtLDp~a~G~l~~~~g~--~tk~~~~~~~~--~K~Y~ 75 (793)
.-+|+||||+||.+ ..++..+..-++ ..++|-..-||-.=||||++|-.. +..+...|.+. .|+|.
T Consensus 85 ~~llVvnKP~Gl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~vHRLDkdTSGlll~AK~~~a~~~l~~~f~~r~v~K~Y~ 164 (289)
T COG0564 85 EDLLVVNKPAGLVVHPGGGHHEGTLVNALLRHCQDGVERPGIVHRLDKDTSGLLLVAKNREAARELSEQFKQRKVKKTYL 164 (289)
T ss_pred CCEEEEECCCCCcCcCCCCCccHhHHHHHHHhccccCCceeeeccCCCCCceEEEEECCHHHHHHHHHHHhcCcCcEEEE
Confidence 34689999999998 467777766554 468999999999999999999999 56677777664 69999
Q ss_pred EEEEEcee
Q psy1760 76 AIIHLGIT 83 (793)
Q Consensus 76 ~~~~~g~~ 83 (793)
|.+. |.-
T Consensus 165 Alv~-G~~ 171 (289)
T COG0564 165 ALVR-GHL 171 (289)
T ss_pred EEEE-Ccc
Confidence 9999 743
No 493
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.49 E-value=0.022 Score=51.34 Aligned_cols=80 Identities=21% Similarity=0.177 Sum_probs=48.3
Q ss_pred eeeee-cccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 213 IAIIA-HVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 213 IaIiG-~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
|++.| ..|+||||+.-.|...... .+ ..-.++|.... +.+.++|+|+..+. ...
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~---~~-~~vl~~d~d~~-------------------~d~viiD~p~~~~~--~~~ 56 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR---RG-KRVLLIDLDPQ-------------------YDYIIIDTPPSLGL--LTR 56 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh---CC-CcEEEEeCCCC-------------------CCEEEEeCcCCCCH--HHH
Confidence 34555 6789999998877644211 00 00111111111 67899999997543 445
Q ss_pred HHhhccCcEEEEEeCCCCCCchhHHH
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQTRFV 317 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~qt~~~ 317 (793)
.++..+|.+++++++...-.......
T Consensus 57 ~~l~~ad~viv~~~~~~~s~~~~~~~ 82 (104)
T cd02042 57 NALAAADLVLIPVQPSPLDLDGLEKL 82 (104)
T ss_pred HHHHHCCEEEEeccCCHHHHHHHHHH
Confidence 78899999999998865433333333
No 494
>KOG0780|consensus
Probab=95.34 E-value=0.069 Score=58.64 Aligned_cols=124 Identities=18% Similarity=0.233 Sum_probs=64.5
Q ss_pred ceeeeecccCCcceehhhhhhccCccccc-ccc-ccc----cccchhh-ccccceEEeeeee-------------EEeec
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKN-QNI-NAR----IMDSNEI-EKERGITIFSKNC-------------SIEYN 271 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~-~~v-~~~----~~D~~~~-e~erGiTi~~~~~-------------~~~~~ 271 (793)
-|.++|..|+||||.+..|.+....-... .-+ .++ ..|.... ....++.+....+ .+.-+
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke 182 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKE 182 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhc
Confidence 56899999999999998887541110000 000 000 0111111 1112333222211 22234
Q ss_pred CeEEEEecCCCccc----chHHHHHHhh--ccCcEEEEEeCCCCCCchhHHHHHHHHHcCCcc-EEEEecccCC
Q psy1760 272 GTRINIIDTPGHAD----FGGEVERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRS 338 (793)
Q Consensus 272 ~~~i~iiDTPGh~d----f~~ev~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~-IvvINKiD~~ 338 (793)
++.+.|+||.|-.. ...|+....+ ..|-+|+|+||+-| |.-+..-.+....+-+ -++++|+|-.
T Consensus 183 ~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG---Qaae~Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 183 NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG---QAAEAQARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc---HhHHHHHHHHHHhhccceEEEEecccC
Confidence 78999999999322 2334433322 36999999999976 2222222222222223 5789999964
No 495
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.33 E-value=0.027 Score=49.08 Aligned_cols=76 Identities=24% Similarity=0.215 Sum_probs=49.9
Q ss_pred eeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH-HH
Q psy1760 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE-VE 291 (793)
Q Consensus 213 IaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e-v~ 291 (793)
+++.|..|+||||+...|...... .|..+. .++ .+.++|+|+..+.... ..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~--------------------~g~~v~----~~~----d~iivD~~~~~~~~~~~~~ 53 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK--------------------RGKRVL----LID----DYVLIDTPPGLGLLVLLCL 53 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--------------------CCCeEE----EEC----CEEEEeCCCCccchhhhhh
Confidence 467788899999999988755211 111111 111 7899999997654332 14
Q ss_pred HHhhccCcEEEEEeCCCCCCchhHH
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQTRF 316 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~qt~~ 316 (793)
..+..+|.+++++++..........
T Consensus 54 ~~~~~~~~vi~v~~~~~~~~~~~~~ 78 (99)
T cd01983 54 LALLAADLVIIVTTPEALAVLGARR 78 (99)
T ss_pred hhhhhCCEEEEecCCchhhHHHHHH
Confidence 5678899999999987654444333
No 496
>TIGR00005 rluA_subfam pseudouridine synthase, RluA family. modifies uracil-65 in transfer RNAs to pseudouridine.
Probab=95.32 E-value=0.018 Score=62.65 Aligned_cols=70 Identities=24% Similarity=0.337 Sum_probs=53.9
Q ss_pred ceEEEeeCCCCCChH--------HHHHHHHHHhcc----ccccCCCCCCCCCcceeeeeecccc--cccchhcc--CCce
Q psy1760 10 SVVIPKYKPYGLSSN--------NALKKIKYLLNA----KKVGYTGTLDPFATGLLPLCFGEAT--KFSNYLSE--ADKY 73 (793)
Q Consensus 10 ~g~~~~~Kp~g~ts~--------~~v~~~~~~~~~----~k~gh~gtLDp~a~G~l~~~~g~~t--k~~~~~~~--~~K~ 73 (793)
..+|+||||+|+.+| .++..+++.+.. .++...|-||-..||||+++-...+ .+...+.+ ..|+
T Consensus 79 ~~~lvvnKP~g~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~ 158 (299)
T TIGR00005 79 EDIIVINKPSGLVVHPGGGNPFGTVLNALLAHCPPIAGVERVGIVHRLDRDTSGLMVVAKTPLALRELQRQLKNRTVTKE 158 (299)
T ss_pred CCEEEEECCCCCeEeCCCCCCcccHHHHHHHhcccccCCCcCceECCCCCCCceEEEEEcCHHHHHHHHHHHHhCCcceE
Confidence 568999999999765 367777766653 5688999999999999999988642 24444433 5799
Q ss_pred EEEEEE
Q psy1760 74 YEAIIH 79 (793)
Q Consensus 74 Y~~~~~ 79 (793)
|.|.+.
T Consensus 159 Y~a~v~ 164 (299)
T TIGR00005 159 YVALVH 164 (299)
T ss_pred EEEEEe
Confidence 999986
No 497
>PRK13695 putative NTPase; Provisional
Probab=95.27 E-value=0.016 Score=57.67 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=29.5
Q ss_pred hccCcEEEEEe---CCCCCCchhHHHHHHHHHcCCccEEEEecc
Q psy1760 295 SMVDNVLLLID---AVEGPMPQTRFVTRKALKLGFKPIVVVNKI 335 (793)
Q Consensus 295 ~~aD~allVVD---a~~g~~~qt~~~l~~~~~~~ip~IvvINKi 335 (793)
..+|. +++| +.+....+....+..+.+.+.|+|+++||.
T Consensus 95 ~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 95 EEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred CCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 33444 7889 555556677788888888899999999984
No 498
>PRK11112 tRNA pseudouridine synthase C; Provisional
Probab=95.25 E-value=0.024 Score=60.40 Aligned_cols=70 Identities=17% Similarity=0.296 Sum_probs=51.7
Q ss_pred cceEEEeeCCCCCChHH----------HHHHHHHHhccccccCCCCCCCCCcceeeeeecccc--cccchhcc--CCceE
Q psy1760 9 VSVVIPKYKPYGLSSNN----------ALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEAT--KFSNYLSE--ADKYY 74 (793)
Q Consensus 9 ~~g~~~~~Kp~g~ts~~----------~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~t--k~~~~~~~--~~K~Y 74 (793)
.+.+|+||||+|+.+|. +...++..++ .++...+-||-..||||++|-.+.. ++...+.+ ..|+|
T Consensus 8 d~~~lvvnKPaGl~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~VHRLDr~TSGlll~Ak~~~~~~~L~~~f~~~~v~K~Y 86 (257)
T PRK11112 8 DEWLVAVNKPAGWLVHRSWLDRHETVFVMQTVRDQIG-QHVFTAHRLDRPTSGVLLMALSSEVARLLAQQFEQHQIQKTY 86 (257)
T ss_pred cCCEEEEECCCCCeecCCCCCCCchHHHHHHHHHHhC-CCceeeccCCCCCeeEEEEECCHHHHHHHHHHHHhCCcceEE
Confidence 35689999999997763 2344444443 2577899999999999999988763 35554543 57999
Q ss_pred EEEEE
Q psy1760 75 EAIIH 79 (793)
Q Consensus 75 ~~~~~ 79 (793)
.|.+.
T Consensus 87 ~Alv~ 91 (257)
T PRK11112 87 HAIVR 91 (257)
T ss_pred EEEEE
Confidence 99986
No 499
>KOG1424|consensus
Probab=95.23 E-value=0.0092 Score=67.45 Aligned_cols=60 Identities=17% Similarity=0.308 Sum_probs=42.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCc--ccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH--ADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh--~df~~ 288 (793)
-+|+++|.||+||||++|+|.+... -.+..-+|.|.......+ .-.+.|.|+||. ..|..
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~Kk---------------VsVS~TPGkTKHFQTi~l---s~~v~LCDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKK---------------VSVSSTPGKTKHFQTIFL---SPSVCLCDCPGLVFPSFSP 376 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCce---------------eeeecCCCCcceeEEEEc---CCCceecCCCCccccCCCc
Confidence 5899999999999999999987632 223445676654444433 346889999996 34543
No 500
>KOG0447|consensus
Probab=95.17 E-value=0.3 Score=55.55 Aligned_cols=84 Identities=18% Similarity=0.294 Sum_probs=53.3
Q ss_pred cceEEeeeeeEEeecC---eEEEEecCCCccc-----ch--------HHHHHHhhccCcEEEEEeCCC--CCCchhHHHH
Q psy1760 257 RGITIFSKNCSIEYNG---TRINIIDTPGHAD-----FG--------GEVERILSMVDNVLLLIDAVE--GPMPQTRFVT 318 (793)
Q Consensus 257 rGiTi~~~~~~~~~~~---~~i~iiDTPGh~d-----f~--------~ev~~~l~~aD~allVVDa~~--g~~~qt~~~l 318 (793)
.|.|+..-..++..+| .+..++|.||... .. .....++...+++||+|--.. ........+.
T Consensus 393 ~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLV 472 (980)
T KOG0447|consen 393 EGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLV 472 (980)
T ss_pred CCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHH
Confidence 4777777777777665 4789999999632 21 122334667788888874211 1111112344
Q ss_pred HHHHHcCCccEEEEecccCCCC
Q psy1760 319 RKALKLGFKPIVVVNKIDRSNA 340 (793)
Q Consensus 319 ~~~~~~~ip~IvvINKiD~~~a 340 (793)
..+.-.|...|+|++|+|+...
T Consensus 473 sq~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 473 SQMDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred HhcCCCCCeeEEEEeecchhhh
Confidence 4555678889999999999754
Done!