Query psy1760
Match_columns 793
No_of_seqs 734 out of 5029
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 18:14:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e3x_A BIPA; MCSG,PSI2, struct 100.0 4.3E-96 1E-100 783.5 26.8 305 481-790 2-309 (332)
2 2ywe_A GTP-binding protein LEP 100.0 4.4E-84 1.5E-88 752.5 45.5 492 211-738 7-546 (600)
3 4fn5_A EF-G 1, elongation fact 100.0 2E-84 6.9E-89 776.9 35.8 448 211-683 14-697 (709)
4 3cb4_D GTP-binding protein LEP 100.0 1.9E-82 6.4E-87 740.3 49.2 491 211-738 5-541 (599)
5 3j25_A Tetracycline resistance 100.0 1.3E-86 4.4E-91 786.0 6.1 450 211-691 3-617 (638)
6 2rdo_7 EF-G, elongation factor 100.0 5.6E-79 1.9E-83 727.1 47.6 448 211-683 11-691 (704)
7 2xex_A Elongation factor G; GT 100.0 2E-78 6.8E-83 721.8 42.0 448 211-683 11-679 (693)
8 1dar_A EF-G, elongation factor 100.0 2E-78 6.7E-83 721.7 33.5 448 211-683 13-680 (691)
9 2dy1_A Elongation factor G; tr 100.0 5.1E-75 1.7E-79 690.1 40.2 445 211-683 10-650 (665)
10 1n0u_A EF-2, elongation factor 100.0 1.3E-72 4.5E-77 684.2 43.3 467 211-692 20-810 (842)
11 3vqt_A RF-3, peptide chain rel 100.0 1.2E-69 4.1E-74 629.3 23.0 364 211-599 32-496 (548)
12 1sgv_A TRNA pseudouridine synt 100.0 6.9E-65 2.3E-69 537.0 13.5 207 8-214 4-214 (316)
13 1r3e_A TRNA pseudouridine synt 100.0 3.1E-64 1.1E-68 531.4 15.1 205 9-214 2-206 (309)
14 1k8w_A TRNA pseudouridine synt 100.0 9.8E-64 3.3E-68 531.4 15.6 207 7-214 22-228 (327)
15 2h5e_A Peptide chain release f 100.0 4.7E-57 1.6E-61 521.7 32.0 404 211-659 14-514 (529)
16 3tr5_A RF-3, peptide chain rel 100.0 8.2E-57 2.8E-61 519.2 32.3 404 211-659 14-513 (528)
17 2apo_A Probable tRNA pseudouri 100.0 6.7E-48 2.3E-52 416.9 12.0 171 9-214 65-235 (357)
18 3u28_A H/ACA ribonucleoprotein 100.0 5.6E-48 1.9E-52 419.3 10.2 175 4-212 48-229 (400)
19 2aus_C Pseudouridine synthase; 100.0 2.1E-47 7.2E-52 412.7 11.9 168 9-211 45-212 (334)
20 3j2k_7 ERF3, eukaryotic polype 100.0 5.6E-38 1.9E-42 355.7 25.8 278 211-500 18-329 (439)
21 1d2e_A Elongation factor TU (E 100.0 5.3E-38 1.8E-42 351.8 19.6 279 211-498 4-290 (397)
22 2c78_A Elongation factor TU-A; 100.0 2E-37 6.9E-42 348.1 19.1 281 211-498 12-308 (405)
23 1jny_A EF-1-alpha, elongation 100.0 6E-37 2.1E-41 347.2 22.8 279 211-500 7-319 (435)
24 3p26_A Elongation factor 1 alp 100.0 4E-36 1.4E-40 344.8 22.8 283 211-499 34-363 (483)
25 1r5b_A Eukaryotic peptide chai 100.0 1.4E-36 4.9E-41 346.8 17.3 279 211-500 44-358 (467)
26 1f60_A Elongation factor EEF1A 100.0 7.8E-36 2.7E-40 339.9 20.1 278 211-499 8-329 (458)
27 3mca_A HBS1, elongation factor 100.0 2E-36 6.9E-41 354.2 13.5 278 211-500 178-491 (592)
28 1zun_B Sulfate adenylate trans 100.0 5.4E-35 1.9E-39 331.1 24.5 279 211-500 25-328 (434)
29 3avx_A Elongation factor TS, e 100.0 1.7E-35 5.7E-40 357.7 18.7 279 211-499 297-582 (1289)
30 2elf_A Protein translation elo 100.0 3.4E-35 1.2E-39 325.4 17.2 237 212-496 23-275 (370)
31 3izq_1 HBS1P, elongation facto 100.0 3.1E-35 1.1E-39 345.1 17.1 283 211-499 168-497 (611)
32 1kk1_A EIF2gamma; initiation o 100.0 4.7E-34 1.6E-38 321.1 22.0 258 211-499 11-317 (410)
33 1s0u_A EIF-2-gamma, translatio 100.0 2.1E-33 7.1E-38 315.7 21.4 258 211-499 9-315 (408)
34 1wb1_A Translation elongation 100.0 2.1E-34 7.1E-39 329.9 11.7 256 211-497 20-284 (482)
35 1g7s_A Translation initiation 100.0 3.4E-33 1.2E-37 326.0 15.5 297 211-544 6-373 (594)
36 3sjy_A Translation initiation 100.0 1.7E-32 6E-37 307.7 20.6 269 211-500 9-310 (403)
37 3izy_P Translation initiation 100.0 2.8E-33 9.5E-38 321.9 6.6 253 211-500 5-261 (537)
38 1zo1_I IF2, translation initia 100.0 1.6E-32 5.6E-37 313.0 8.5 251 211-500 5-260 (501)
39 3gee_A MNME, tRNA modification 99.8 2E-21 6.8E-26 221.5 5.4 236 102-403 153-401 (476)
40 3qq5_A Small GTP-binding prote 99.8 1.4E-19 4.9E-24 203.0 10.0 178 211-425 35-227 (423)
41 3geh_A MNME, tRNA modification 99.8 3.7E-20 1.3E-24 210.3 3.4 234 102-403 145-386 (462)
42 3iev_A GTP-binding protein ERA 99.8 1.3E-18 4.4E-23 188.0 13.8 161 211-402 11-183 (308)
43 1wf3_A GTP-binding protein; GT 99.8 9.2E-19 3.1E-23 188.5 12.0 156 211-401 8-173 (301)
44 2hjg_A GTP-binding protein ENG 99.8 1.9E-18 6.4E-23 195.6 12.1 192 169-399 142-347 (436)
45 2dyk_A GTP-binding protein; GT 99.8 3.8E-18 1.3E-22 164.1 12.1 152 211-400 2-161 (161)
46 4dhe_A Probable GTP-binding pr 99.7 1.3E-18 4.4E-23 177.6 9.2 170 211-404 30-214 (223)
47 2lkc_A Translation initiation 99.7 1.3E-18 4.3E-23 170.5 7.9 160 211-400 9-170 (178)
48 1xzp_A Probable tRNA modificat 99.7 6.2E-19 2.1E-23 201.1 4.7 230 103-400 166-404 (482)
49 1ega_A Protein (GTP-binding pr 99.7 3.7E-18 1.3E-22 183.8 9.5 157 211-401 9-175 (301)
50 4dcu_A GTP-binding protein ENG 99.7 2.6E-17 9E-22 187.3 12.6 193 170-401 163-369 (456)
51 3iby_A Ferrous iron transport 99.7 1.6E-17 5.3E-22 174.8 9.3 150 211-398 2-164 (256)
52 3i8s_A Ferrous iron transport 99.7 9.3E-18 3.2E-22 178.2 7.1 154 211-402 4-170 (274)
53 1mky_A Probable GTP-binding pr 99.7 1.4E-16 4.8E-21 180.4 15.4 153 212-401 3-166 (439)
54 1svi_A GTP-binding protein YSX 99.7 8.5E-17 2.9E-21 160.2 11.7 157 211-400 24-194 (195)
55 2hjg_A GTP-binding protein ENG 99.7 5.2E-17 1.8E-21 183.8 11.3 153 211-401 4-165 (436)
56 2gj8_A MNME, tRNA modification 99.7 8E-17 2.7E-21 158.3 10.9 151 211-401 5-166 (172)
57 1zj6_A ADP-ribosylation factor 99.7 1.2E-16 4E-21 158.6 12.0 160 211-404 17-181 (187)
58 2fg5_A RAB-22B, RAS-related pr 99.7 9.9E-17 3.4E-21 160.1 11.5 161 210-402 23-187 (192)
59 2efe_B Small GTP-binding prote 99.7 1.2E-16 4E-21 156.8 11.5 160 211-402 13-176 (181)
60 1r2q_A RAS-related protein RAB 99.7 1.3E-16 4.3E-21 154.4 11.5 158 211-400 7-168 (170)
61 3pqc_A Probable GTP-binding pr 99.7 1.3E-16 4.6E-21 158.2 11.8 156 211-400 24-193 (195)
62 3t1o_A Gliding protein MGLA; G 99.7 9.4E-17 3.2E-21 159.5 9.9 166 211-400 15-191 (198)
63 4bas_A ADP-ribosylation factor 99.7 1.3E-16 4.5E-21 159.2 10.5 161 211-402 18-190 (199)
64 1r8s_A ADP-ribosylation factor 99.7 4.6E-16 1.6E-20 150.1 14.0 155 212-400 2-161 (164)
65 1upt_A ARL1, ADP-ribosylation 99.7 1.6E-16 5.3E-21 154.3 10.7 156 211-400 8-168 (171)
66 2xtp_A GTPase IMAP family memb 99.7 4.2E-17 1.4E-21 171.2 6.7 164 211-401 23-208 (260)
67 3a1s_A Iron(II) transport prot 99.7 1.6E-16 5.5E-21 167.2 11.0 154 211-401 6-167 (258)
68 1z0j_A RAB-22, RAS-related pro 99.7 2.2E-16 7.5E-21 152.9 11.1 158 211-400 7-168 (170)
69 2wji_A Ferrous iron transport 99.7 2.4E-16 8.3E-21 153.4 11.3 152 211-399 4-163 (165)
70 1ek0_A Protein (GTP-binding pr 99.7 3.1E-16 1.1E-20 151.6 11.9 159 211-400 4-168 (170)
71 3k53_A Ferrous iron transport 99.7 1.9E-16 6.5E-21 167.7 11.3 152 211-400 4-165 (271)
72 2h17_A ADP-ribosylation factor 99.7 1.7E-16 5.8E-21 156.7 9.8 154 211-398 22-180 (181)
73 3clv_A RAB5 protein, putative; 99.7 3.2E-16 1.1E-20 156.0 11.6 109 273-400 93-203 (208)
74 2g6b_A RAS-related protein RAB 99.7 2.7E-16 9.4E-21 154.1 10.9 158 211-401 11-174 (180)
75 1z0f_A RAB14, member RAS oncog 99.7 3.6E-16 1.2E-20 152.7 11.5 157 211-399 16-176 (179)
76 1zd9_A ADP-ribosylation factor 99.7 4.2E-16 1.4E-20 155.0 12.1 158 211-401 23-185 (188)
77 2fu5_C RAS-related protein RAB 99.7 1.5E-16 5.2E-21 156.7 8.8 157 211-401 9-171 (183)
78 3tkl_A RAS-related protein RAB 99.7 4.1E-16 1.4E-20 155.1 12.0 157 211-401 17-179 (196)
79 3tw8_B RAS-related protein RAB 99.6 1.2E-16 4.2E-21 156.3 7.7 157 211-401 10-171 (181)
80 1c1y_A RAS-related protein RAP 99.6 3.6E-16 1.2E-20 150.9 10.9 157 211-399 4-165 (167)
81 1ksh_A ARF-like protein 2; sma 99.6 2.2E-16 7.4E-21 156.2 9.4 157 211-401 19-180 (186)
82 2hxs_A RAB-26, RAS-related pro 99.6 3.6E-16 1.2E-20 152.9 10.8 158 211-402 7-174 (178)
83 1fzq_A ADP-ribosylation factor 99.6 1.2E-15 4E-20 151.1 14.6 157 211-401 17-178 (181)
84 1wms_A RAB-9, RAB9, RAS-relate 99.6 6.4E-16 2.2E-20 151.0 12.4 156 211-400 8-173 (177)
85 2y8e_A RAB-protein 6, GH09086P 99.6 5.6E-16 1.9E-20 151.3 11.9 157 211-401 15-177 (179)
86 2h57_A ADP-ribosylation factor 99.6 3.3E-16 1.1E-20 155.8 10.3 158 211-400 22-186 (190)
87 1kao_A RAP2A; GTP-binding prot 99.6 2.6E-16 8.8E-21 151.5 9.2 154 211-399 4-164 (167)
88 2il1_A RAB12; G-protein, GDP, 99.6 4.3E-16 1.5E-20 155.6 11.1 156 211-399 27-188 (192)
89 1zbd_A Rabphilin-3A; G protein 99.6 5.5E-16 1.9E-20 155.6 11.8 158 211-400 9-170 (203)
90 1m2o_B GTP-binding protein SAR 99.6 2E-16 6.8E-21 158.0 8.4 157 211-399 24-190 (190)
91 1f6b_A SAR1; gtpases, N-termin 99.6 2.9E-16 9.9E-21 158.0 9.6 157 211-399 26-197 (198)
92 2erx_A GTP-binding protein DI- 99.6 7.5E-16 2.5E-20 149.2 12.1 159 211-402 4-168 (172)
93 1mky_A Probable GTP-binding pr 99.6 6E-16 2.1E-20 175.2 13.2 199 169-400 143-354 (439)
94 2bme_A RAB4A, RAS-related prot 99.6 4.8E-16 1.6E-20 153.3 10.7 157 211-401 11-173 (186)
95 2nzj_A GTP-binding protein REM 99.6 4.3E-16 1.5E-20 151.7 10.2 155 211-400 5-168 (175)
96 3cph_A RAS-related protein SEC 99.6 4.3E-16 1.5E-20 157.3 10.3 156 211-401 21-182 (213)
97 1u8z_A RAS-related protein RAL 99.6 6.4E-16 2.2E-20 148.9 11.0 154 211-399 5-165 (168)
98 2b6h_A ADP-ribosylation factor 99.6 1.4E-15 4.7E-20 152.1 13.7 156 211-400 30-190 (192)
99 4dsu_A GTPase KRAS, isoform 2B 99.6 8.1E-16 2.8E-20 151.7 11.9 155 211-401 5-166 (189)
100 2gf9_A RAS-related protein RAB 99.6 2.9E-16 1E-20 155.9 8.7 158 211-400 23-184 (189)
101 3gj0_A GTP-binding nuclear pro 99.6 2.9E-16 9.9E-21 160.3 8.9 157 211-401 16-175 (221)
102 1ky3_A GTP-binding protein YPT 99.6 3.4E-16 1.2E-20 153.3 8.9 157 211-399 9-176 (182)
103 2f7s_A C25KG, RAS-related prot 99.6 3.8E-16 1.3E-20 158.6 9.4 168 199-400 14-198 (217)
104 3bc1_A RAS-related protein RAB 99.6 8.7E-16 3E-20 151.9 11.6 158 210-400 11-184 (195)
105 2p5s_A RAS and EF-hand domain 99.6 4.9E-16 1.7E-20 155.9 9.9 159 211-400 29-196 (199)
106 1g16_A RAS-related protein SEC 99.6 4.5E-16 1.5E-20 150.7 9.3 156 211-401 4-165 (170)
107 3q72_A GTP-binding protein RAD 99.6 5.9E-16 2E-20 149.6 9.9 155 211-399 3-162 (166)
108 2wjg_A FEOB, ferrous iron tran 99.6 5.9E-16 2E-20 153.1 10.0 155 211-402 8-170 (188)
109 4dcu_A GTP-binding protein ENG 99.6 3.5E-16 1.2E-20 178.0 9.4 155 211-402 24-186 (456)
110 1moz_A ARL1, ADP-ribosylation 99.6 5.2E-16 1.8E-20 152.7 9.4 157 210-400 18-179 (183)
111 2oil_A CATX-8, RAS-related pro 99.6 8.7E-16 3E-20 152.9 10.9 158 210-399 25-186 (193)
112 1mh1_A RAC1; GTP-binding, GTPa 99.6 3.2E-16 1.1E-20 154.2 7.7 157 211-403 6-182 (186)
113 3kkq_A RAS-related protein M-R 99.6 8.4E-16 2.9E-20 151.3 10.7 154 211-399 19-180 (183)
114 2fh5_B SR-beta, signal recogni 99.6 1.3E-15 4.6E-20 154.2 12.3 164 211-398 8-213 (214)
115 1x3s_A RAS-related protein RAB 99.6 7.6E-16 2.6E-20 152.9 10.2 158 211-401 16-178 (195)
116 2ce2_X GTPase HRAS; signaling 99.6 1.6E-15 5.5E-20 145.6 12.0 153 211-399 4-163 (166)
117 2hup_A RAS-related protein RAB 99.6 1.5E-15 5.1E-20 153.0 12.2 157 211-401 30-193 (201)
118 1z2a_A RAS-related protein RAB 99.6 6.8E-16 2.3E-20 149.1 9.2 155 211-399 6-165 (168)
119 2fn4_A P23, RAS-related protei 99.6 7.9E-16 2.7E-20 150.5 9.8 156 211-401 10-172 (181)
120 1vg8_A RAS-related protein RAB 99.6 6.1E-16 2.1E-20 155.5 9.1 156 211-400 9-174 (207)
121 2a9k_A RAS-related protein RAL 99.6 1.4E-15 4.7E-20 149.6 11.4 155 211-400 19-180 (187)
122 3dz8_A RAS-related protein RAB 99.6 4.1E-16 1.4E-20 155.3 7.5 161 208-400 21-185 (191)
123 3b1v_A Ferrous iron uptake tra 99.6 3.6E-16 1.2E-20 165.8 7.5 153 211-401 4-164 (272)
124 2atx_A Small GTP binding prote 99.6 5.9E-16 2E-20 154.3 8.6 158 211-401 19-193 (194)
125 1z06_A RAS-related protein RAB 99.6 9.6E-16 3.3E-20 152.2 9.7 156 211-400 21-187 (189)
126 2qu8_A Putative nucleolar GTP- 99.6 4.7E-15 1.6E-19 152.3 14.6 159 211-400 30-204 (228)
127 2bov_A RAla, RAS-related prote 99.6 2.3E-15 8E-20 150.9 11.9 156 211-401 15-177 (206)
128 3lxw_A GTPase IMAP family memb 99.6 1.8E-15 6E-20 158.2 11.2 164 211-401 22-208 (247)
129 2x77_A ADP-ribosylation factor 99.6 1E-15 3.5E-20 151.8 9.0 157 211-401 23-184 (189)
130 1z08_A RAS-related protein RAB 99.6 8.2E-16 2.8E-20 149.0 8.1 156 211-400 7-168 (170)
131 2a5j_A RAS-related protein RAB 99.6 1.1E-15 3.6E-20 152.3 8.8 157 210-400 21-183 (191)
132 2yc2_C IFT27, small RAB-relate 99.6 7E-16 2.4E-20 154.8 7.5 158 211-400 21-191 (208)
133 3t5g_A GTP-binding protein RHE 99.6 6.7E-16 2.3E-20 151.8 7.1 157 211-402 7-170 (181)
134 2o52_A RAS-related protein RAB 99.6 1.2E-15 3.9E-20 153.6 8.8 159 208-400 23-187 (200)
135 2bcg_Y Protein YP2, GTP-bindin 99.6 1.9E-15 6.5E-20 152.2 10.2 156 211-400 9-170 (206)
136 2ew1_A RAS-related protein RAB 99.6 2.6E-15 8.8E-20 151.7 10.9 158 210-401 26-189 (201)
137 2gf0_A GTP-binding protein DI- 99.6 3.4E-15 1.2E-19 148.9 11.6 158 211-402 9-172 (199)
138 4gzl_A RAS-related C3 botulinu 99.6 8.3E-16 2.8E-20 155.2 7.3 156 211-399 31-203 (204)
139 3bwd_D RAC-like GTP-binding pr 99.6 4.7E-16 1.6E-20 152.7 5.1 161 211-402 9-182 (182)
140 3reg_A RHO-like small GTPase; 99.6 2E-15 6.8E-20 150.6 9.7 157 211-401 24-188 (194)
141 3con_A GTPase NRAS; structural 99.6 2.7E-15 9.4E-20 148.7 10.2 154 211-400 22-182 (190)
142 4djt_A GTP-binding nuclear pro 99.6 1.7E-15 5.8E-20 153.9 8.7 158 211-401 12-175 (218)
143 3q85_A GTP-binding protein REM 99.6 3.7E-15 1.3E-19 144.4 10.6 155 212-400 4-166 (169)
144 3o47_A ADP-ribosylation factor 99.6 2.4E-15 8.2E-20 163.9 10.1 155 212-400 167-326 (329)
145 3llu_A RAS-related GTP-binding 99.6 3.7E-15 1.3E-19 149.2 10.6 159 211-399 21-195 (196)
146 3l0i_B RAS-related protein RAB 99.6 2.3E-16 8E-21 158.3 1.7 157 211-401 34-196 (199)
147 3cpj_B GTP-binding protein YPT 99.6 2.4E-15 8.1E-20 153.9 8.1 158 211-402 14-177 (223)
148 2cxx_A Probable GTP-binding pr 99.6 3.5E-15 1.2E-19 147.5 9.1 156 212-401 3-184 (190)
149 3t5d_A Septin-7; GTP-binding p 99.6 3.7E-15 1.3E-19 158.1 9.7 167 211-403 9-206 (274)
150 2fv8_A H6, RHO-related GTP-bin 99.6 2.6E-15 9E-20 151.7 8.2 164 211-403 26-202 (207)
151 3oes_A GTPase rhebl1; small GT 99.6 2.2E-15 7.4E-20 151.4 7.2 159 211-402 25-188 (201)
152 2q3h_A RAS homolog gene family 99.6 4.6E-15 1.6E-19 148.6 9.6 159 211-402 21-196 (201)
153 2j0v_A RAC-like GTP-binding pr 99.6 3E-15 1E-19 151.5 7.8 160 211-403 10-182 (212)
154 2gco_A H9, RHO-related GTP-bin 99.6 3.1E-15 1.1E-19 150.4 7.4 155 211-399 26-198 (201)
155 2qtf_A Protein HFLX, GTP-bindi 99.5 2.3E-14 7.9E-19 158.0 14.5 163 212-404 181-357 (364)
156 2j1l_A RHO-related GTP-binding 99.5 4.7E-15 1.6E-19 150.8 8.3 157 211-401 35-209 (214)
157 3q3j_B RHO-related GTP-binding 99.5 4.4E-15 1.5E-19 151.3 8.1 160 211-402 28-204 (214)
158 3r7w_A Gtpase1, GTP-binding pr 99.5 1.1E-14 3.8E-19 157.0 11.6 159 211-399 4-179 (307)
159 3ihw_A Centg3; RAS, centaurin, 99.5 1.3E-14 4.4E-19 144.1 10.5 150 211-399 21-178 (184)
160 2atv_A RERG, RAS-like estrogen 99.5 2.1E-14 7.1E-19 143.5 11.6 157 211-400 29-190 (196)
161 3cbq_A GTP-binding protein REM 99.5 2.4E-14 8E-19 143.7 11.9 159 211-403 24-190 (195)
162 2iwr_A Centaurin gamma 1; ANK 99.5 1.8E-14 6.1E-19 141.1 10.6 151 211-400 8-168 (178)
163 1m7b_A RND3/RHOE small GTP-bin 99.5 6.6E-15 2.2E-19 145.6 6.6 158 211-399 8-181 (184)
164 3th5_A RAS-related C3 botulinu 99.3 9.3E-16 3.2E-20 154.4 0.0 159 211-398 31-202 (204)
165 3lvq_E ARF-GAP with SH3 domain 99.5 2.5E-14 8.6E-19 164.3 10.8 157 211-401 323-484 (497)
166 3c5c_A RAS-like protein 12; GD 99.5 2.3E-14 7.9E-19 142.5 9.0 155 211-399 22-184 (187)
167 1lnz_A SPO0B-associated GTP-bi 99.5 8.9E-15 3.1E-19 159.9 6.6 156 211-402 159-331 (342)
168 2e87_A Hypothetical protein PH 99.5 1.2E-13 4.1E-18 152.1 15.3 154 211-400 168-335 (357)
169 4dkx_A RAS-related protein RAB 99.5 6.7E-14 2.3E-18 143.3 11.5 157 211-401 14-176 (216)
170 1gwn_A RHO-related GTP-binding 99.5 1.5E-14 5.2E-19 146.4 6.4 156 211-399 29-202 (205)
171 2qag_A Septin-2, protein NEDD5 99.5 3.3E-14 1.1E-18 156.7 9.4 194 211-438 38-265 (361)
172 2wkq_A NPH1-1, RAS-related C3 99.5 6.8E-14 2.3E-18 151.1 11.2 158 211-402 156-331 (332)
173 2aka_B Dynamin-1; fusion prote 99.5 8.9E-14 3E-18 148.5 10.4 173 211-398 27-250 (299)
174 3def_A T7I23.11 protein; chlor 99.4 1.4E-13 4.7E-18 144.9 10.2 114 211-339 37-165 (262)
175 1jwy_B Dynamin A GTPase domain 99.4 7.9E-14 2.7E-18 150.2 8.4 119 271-401 129-262 (315)
176 2j69_A Bacterial dynamin-like 99.4 3.5E-13 1.2E-17 160.6 12.5 118 273-400 174-324 (695)
177 2p67_A LAO/AO transport system 99.4 1.5E-13 5.2E-18 150.3 8.3 114 270-400 146-260 (341)
178 1h65_A Chloroplast outer envel 99.4 2.2E-12 7.4E-17 136.3 16.8 177 211-402 40-246 (270)
179 3p32_A Probable GTPase RV1496/ 99.4 2.8E-13 9.7E-18 149.0 9.6 116 269-401 168-284 (355)
180 1pui_A ENGB, probable GTP-bind 99.4 5.4E-13 1.8E-17 134.4 10.8 159 211-401 27-199 (210)
181 3dpu_A RAB family protein; roc 99.4 2.1E-13 7.3E-18 158.1 8.9 158 211-402 42-209 (535)
182 2g3y_A GTP-binding protein GEM 99.4 3.7E-13 1.3E-17 137.2 9.3 157 211-400 38-202 (211)
183 1nrj_B SR-beta, signal recogni 99.4 2.3E-13 7.9E-18 138.1 7.1 143 211-376 13-169 (218)
184 2zej_A Dardarin, leucine-rich 99.4 3.2E-13 1.1E-17 133.7 7.4 165 211-401 3-178 (184)
185 3lxx_A GTPase IMAP family memb 99.4 4.2E-13 1.4E-17 138.9 7.4 163 211-400 30-213 (239)
186 2cjw_A GTP-binding protein GEM 99.4 1.1E-12 3.7E-17 131.2 8.7 157 211-400 7-171 (192)
187 2f9l_A RAB11B, member RAS onco 99.3 2.7E-12 9.3E-17 128.6 9.9 156 211-400 6-167 (199)
188 1wxq_A GTP-binding protein; st 99.3 3.3E-13 1.1E-17 150.4 2.9 82 212-309 2-114 (397)
189 3r7w_B Gtpase2, GTP-binding pr 99.3 4.1E-12 1.4E-16 137.0 10.2 160 212-401 1-174 (331)
190 2x2e_A Dynamin-1; nitration, h 99.3 4.4E-12 1.5E-16 139.3 8.7 171 211-397 32-254 (353)
191 2ged_A SR-beta, signal recogni 99.3 2.2E-12 7.5E-17 128.0 4.8 125 211-355 49-187 (193)
192 2www_A Methylmalonic aciduria 99.3 6.3E-12 2.2E-16 137.9 8.8 114 270-400 164-278 (349)
193 1oix_A RAS-related protein RAB 99.2 1.6E-11 5.6E-16 122.3 10.2 155 211-399 30-190 (191)
194 1udx_A The GTP-binding protein 99.2 1.4E-11 4.7E-16 137.8 10.6 156 211-402 158-326 (416)
195 2wsm_A Hydrogenase expression/ 99.2 3.8E-12 1.3E-16 129.5 4.2 167 211-401 31-214 (221)
196 3c5h_A Glucocorticoid receptor 99.2 1.6E-11 5.4E-16 128.7 6.6 85 296-399 162-253 (255)
197 3zvr_A Dynamin-1; hydrolase, D 99.2 4.8E-11 1.7E-15 141.6 11.5 171 211-397 52-274 (772)
198 2qpt_A EH domain-containing pr 99.2 3.4E-11 1.2E-15 139.7 9.3 129 211-339 66-232 (550)
199 3t34_A Dynamin-related protein 99.1 5.2E-11 1.8E-15 131.0 7.4 97 272-376 135-246 (360)
200 1yrb_A ATP(GTP)binding protein 99.0 9.4E-11 3.2E-15 122.4 4.8 115 272-400 108-256 (262)
201 1jal_A YCHF protein; nucleotid 99.0 4.8E-10 1.6E-14 122.9 9.6 82 211-308 3-108 (363)
202 4a9a_A Ribosome-interacting GT 99.0 2.4E-10 8.1E-15 125.9 7.2 110 212-338 74-195 (376)
203 3e1y_E Eukaryotic peptide chai 99.0 5.1E-10 1.7E-14 113.3 8.0 85 406-500 3-91 (204)
204 2qm8_A GTPase/ATPase; G protei 98.9 3.3E-10 1.1E-14 123.5 4.1 115 269-400 144-260 (337)
205 2dby_A GTP-binding protein; GD 98.9 2.5E-09 8.6E-14 117.7 9.9 82 211-308 2-111 (368)
206 2j37_W Signal recognition part 98.9 9.5E-10 3.3E-14 125.6 5.8 173 211-398 102-310 (504)
207 2qag_C Septin-7; cell cycle, c 98.9 2.7E-09 9.4E-14 119.3 8.9 164 211-400 32-226 (418)
208 2qnr_A Septin-2, protein NEDD5 98.8 8.3E-09 2.8E-13 110.7 9.7 150 211-375 19-199 (301)
209 2hf9_A Probable hydrogenase ni 98.7 2.4E-08 8.2E-13 101.5 7.9 166 211-399 39-222 (226)
210 1cip_A Protein (guanine nucleo 98.7 1.7E-08 5.8E-13 110.6 6.3 131 259-399 179-342 (353)
211 2qag_B Septin-6, protein NEDD5 98.5 2E-07 6.8E-12 104.0 10.0 141 212-372 44-217 (427)
212 1zcb_A G alpha I/13; GTP-bindi 98.5 5.7E-08 1.9E-12 106.7 5.4 130 260-399 188-351 (362)
213 3ec1_A YQEH GTPase; atnos1, at 98.5 9.3E-09 3.2E-13 113.5 -1.1 116 211-339 163-288 (369)
214 3h2y_A GTPase family protein; 98.4 5.2E-08 1.8E-12 107.4 1.4 117 211-339 161-287 (368)
215 2ohf_A Protein OLA1, GTP-bindi 98.4 1.9E-07 6.6E-12 103.2 5.4 83 210-308 22-128 (396)
216 3sop_A Neuronal-specific septi 98.3 8E-07 2.7E-11 93.7 8.4 123 211-339 3-154 (270)
217 1tq4_A IIGP1, interferon-induc 98.3 5.4E-06 1.9E-10 92.3 13.9 166 212-403 71-255 (413)
218 1u0l_A Probable GTPase ENGC; p 98.2 1E-06 3.5E-11 94.3 6.9 129 274-437 64-194 (301)
219 2v3c_C SRP54, signal recogniti 98.2 1.5E-06 5E-11 97.7 8.2 65 271-338 179-251 (432)
220 3ohm_A Guanine nucleotide-bind 98.2 1.1E-06 3.8E-11 94.9 6.8 132 257-399 151-316 (327)
221 1azs_C GS-alpha; complex (lyas 98.2 7.8E-07 2.7E-11 98.7 5.1 80 260-339 204-298 (402)
222 4fid_A G protein alpha subunit 98.2 7.6E-07 2.6E-11 96.6 4.9 133 257-399 145-326 (340)
223 3kl4_A SRP54, signal recogniti 98.1 2E-06 6.7E-11 96.4 7.0 154 211-380 98-279 (433)
224 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 2.2E-06 7.4E-11 95.0 6.7 83 211-308 21-127 (392)
225 3dm5_A SRP54, signal recogniti 98.1 5.4E-06 1.8E-10 92.9 9.2 153 211-381 101-281 (443)
226 1puj_A YLQF, conserved hypothe 98.1 7.8E-06 2.7E-10 86.7 9.8 102 277-400 3-105 (282)
227 2xtz_A Guanine nucleotide-bind 98.0 1.8E-06 6.1E-11 94.5 3.3 119 271-399 181-343 (354)
228 2v9k_A Uncharacterized protein 98.0 2E-06 7E-11 96.8 3.8 94 69-198 410-514 (530)
229 1j8m_F SRP54, signal recogniti 97.9 1.1E-05 3.6E-10 86.3 7.0 123 211-338 99-252 (297)
230 2yv5_A YJEQ protein; hydrolase 97.9 1E-05 3.4E-10 86.7 5.5 87 292-395 75-163 (302)
231 1f5n_A Interferon-induced guan 97.8 9.8E-06 3.4E-10 94.0 4.3 103 211-324 39-148 (592)
232 3ec1_A YQEH GTPase; atnos1, at 97.7 4.5E-05 1.5E-09 83.9 8.2 108 275-399 51-160 (369)
233 1xe1_A Hypothetical protein PF 97.7 0.00017 5.8E-09 65.0 9.3 78 407-495 32-112 (116)
234 1puj_A YLQF, conserved hypothe 97.6 1.9E-05 6.5E-10 83.7 3.4 57 211-285 121-177 (282)
235 2xxa_A Signal recognition part 97.6 8.6E-05 2.9E-09 83.3 8.7 125 211-338 101-253 (433)
236 3l82_B F-box only protein 4; T 97.6 0.00017 5.8E-09 72.4 9.5 112 274-401 97-223 (227)
237 3cnl_A YLQF, putative uncharac 97.6 3.5E-05 1.2E-09 80.7 4.7 93 280-397 4-97 (262)
238 3h2y_A GTPase family protein; 97.5 0.0001 3.5E-09 81.0 6.5 101 283-399 56-158 (368)
239 3e70_C DPA, signal recognition 97.4 0.00016 5.5E-09 78.1 7.3 165 211-395 130-322 (328)
240 3cnl_A YLQF, putative uncharac 97.3 5.7E-05 1.9E-09 79.1 1.5 58 211-286 100-157 (262)
241 3l2o_B F-box only protein 4; s 97.2 0.0015 5E-08 68.8 10.3 105 281-401 195-308 (312)
242 2yhs_A FTSY, cell division pro 97.1 0.00073 2.5E-08 76.4 7.9 164 212-396 295-493 (503)
243 4dzz_A Plasmid partitioning pr 97.1 0.0007 2.4E-08 67.0 6.8 64 272-338 75-143 (206)
244 1t9h_A YLOQ, probable GTPase E 97.0 0.00059 2E-08 73.0 5.8 85 293-394 83-170 (307)
245 3szr_A Interferon-induced GTP- 97.0 0.0011 3.9E-08 77.5 8.6 68 273-340 147-229 (608)
246 1zu4_A FTSY; GTPase, signal re 96.9 0.001 3.6E-08 71.5 6.9 106 271-397 190-310 (320)
247 1vma_A Cell division protein F 96.9 0.001 3.4E-08 71.2 6.0 89 271-374 185-286 (306)
248 1v9k_A Ribosomal large subunit 96.8 0.00054 1.9E-08 70.1 3.6 70 10-79 9-90 (228)
249 1rj9_A FTSY, signal recognitio 96.8 0.0022 7.6E-08 68.4 7.9 86 272-372 184-282 (304)
250 2ffh_A Protein (FFH); SRP54, s 96.7 0.0017 5.9E-08 72.4 7.1 125 211-338 99-250 (425)
251 2px0_A Flagellar biosynthesis 96.7 0.001 3.5E-08 70.7 4.3 65 271-339 181-253 (296)
252 1d1n_A Initiation factor 2; be 96.6 0.0024 8.3E-08 55.9 5.6 79 412-496 9-90 (99)
253 3dh3_A Ribosomal large subunit 96.5 0.0011 3.7E-08 70.2 3.1 140 9-210 66-214 (290)
254 1ls1_A Signal recognition part 96.2 0.0048 1.6E-07 65.5 6.4 89 271-374 179-274 (295)
255 2rcn_A Probable GTPase ENGC; Y 96.1 0.0085 2.9E-07 65.3 7.8 111 293-437 127-240 (358)
256 2crv_A IF-2MT, translation ini 96.0 0.0082 2.8E-07 54.4 5.5 80 411-496 12-98 (120)
257 3b9q_A Chloroplast SRP recepto 95.9 0.014 4.7E-07 62.2 8.2 144 212-372 102-281 (302)
258 3q5d_A Atlastin-1; G protein, 95.8 0.012 4.1E-07 66.0 7.1 23 211-233 68-90 (447)
259 1vio_A Ribosomal small subunit 95.6 0.002 7E-08 66.4 0.2 67 12-79 64-139 (243)
260 1ksk_A Ribosomal small subunit 95.5 0.0023 7.9E-08 65.6 -0.2 70 9-79 62-140 (234)
261 2og2_A Putative signal recogni 95.4 0.026 8.8E-07 61.5 8.0 145 212-373 159-339 (359)
262 2i82_A Ribosomal large subunit 95.1 0.0095 3.3E-07 60.3 3.1 69 9-79 18-99 (217)
263 2oml_A Ribosomal large subunit 94.9 0.0052 1.8E-07 60.8 0.3 71 9-79 10-86 (189)
264 2olw_A Ribosomal large subunit 94.7 0.0065 2.2E-07 61.5 0.4 71 9-79 38-114 (217)
265 1v9f_A Ribosomal large subunit 94.6 0.019 6.5E-07 61.8 4.0 70 10-79 90-175 (325)
266 2ph1_A Nucleotide-binding prot 94.3 0.061 2.1E-06 55.5 7.0 67 271-337 127-194 (262)
267 1zo1_I IF2, translation initia 94.3 0.077 2.6E-06 60.4 8.3 103 389-497 385-493 (501)
268 3end_A Light-independent proto 94.2 0.017 5.7E-07 61.2 2.5 65 272-337 156-225 (307)
269 1t9h_A YLOQ, probable GTPase E 93.9 0.01 3.5E-07 63.3 0.0 23 211-233 174-196 (307)
270 2gml_A Ribosomal large subunit 93.5 0.017 5.7E-07 59.2 0.7 66 11-79 15-89 (237)
271 3cwq_A Para family chromosome 93.1 0.076 2.6E-06 52.9 4.9 67 271-339 66-134 (209)
272 2yv5_A YJEQ protein; hydrolase 93.1 0.048 1.6E-06 57.9 3.5 20 212-231 167-186 (302)
273 1wcv_1 SOJ, segregation protei 92.8 0.16 5.3E-06 52.2 6.9 81 271-353 110-197 (257)
274 2rcn_A Probable GTPase ENGC; Y 92.6 0.021 7.1E-07 62.2 -0.1 22 212-233 217-238 (358)
275 1g3q_A MIND ATPase, cell divis 92.2 0.17 5.8E-06 50.8 6.1 66 272-339 111-177 (237)
276 3bfv_A CAPA1, CAPB2, membrane 92.0 0.18 6E-06 52.6 6.1 67 272-339 191-258 (271)
277 3ney_A 55 kDa erythrocyte memb 91.9 0.019 6.3E-07 57.3 -1.4 24 211-234 20-43 (197)
278 3izy_P Translation initiation 91.7 0.26 8.9E-06 56.5 7.6 81 409-495 447-534 (537)
279 1hyq_A MIND, cell division inh 91.7 0.15 5E-06 52.3 5.1 65 272-338 110-175 (263)
280 2oze_A ORF delta'; para, walke 91.3 0.2 6.8E-06 52.4 5.7 66 272-339 154-226 (298)
281 3lh2_S 4E10_1VI7A_S0_002_N (T8 91.2 0.17 5.9E-06 42.0 4.0 62 609-672 9-70 (76)
282 1u0l_A Probable GTPase ENGC; p 91.2 0.087 3E-06 55.8 2.7 22 212-233 171-192 (301)
283 3cio_A ETK, tyrosine-protein k 90.9 0.4 1.4E-05 50.6 7.5 66 272-338 213-279 (299)
284 1bif_A 6-phosphofructo-2-kinas 90.9 0.03 1E-06 63.3 -1.4 105 211-331 40-155 (469)
285 3kjh_A CO dehydrogenase/acetyl 90.2 0.19 6.5E-06 50.6 4.1 65 271-337 130-195 (254)
286 2wbm_A MTHSBDS, ribosome matur 89.8 0.62 2.1E-05 47.6 7.4 65 608-673 185-249 (252)
287 3la6_A Tyrosine-protein kinase 89.7 0.53 1.8E-05 49.4 7.2 67 272-339 201-268 (286)
288 3k9g_A PF-32 protein; ssgcid, 89.4 0.44 1.5E-05 48.9 6.2 66 271-338 143-210 (267)
289 1kgd_A CASK, peripheral plasma 88.7 0.1 3.5E-06 50.6 0.7 22 212-233 7-28 (180)
290 1t95_A Hypothetical protein AF 88.7 0.63 2.1E-05 47.3 6.5 66 608-674 170-235 (240)
291 3q9l_A Septum site-determining 88.6 0.29 1E-05 49.7 4.2 65 272-338 113-186 (260)
292 3n70_A Transport activator; si 88.6 0.53 1.8E-05 43.7 5.6 23 211-233 25-47 (145)
293 1ye8_A Protein THEP1, hypothet 88.5 0.11 3.8E-06 50.6 0.8 23 212-234 2-24 (178)
294 1g7s_A Translation initiation 88.5 0.93 3.2E-05 52.6 8.7 80 408-496 462-548 (594)
295 1lvg_A Guanylate kinase, GMP k 88.4 0.11 3.9E-06 51.2 0.8 23 211-233 5-27 (198)
296 4ido_A Atlastin-1; GTPase, GTP 87.9 0.54 1.9E-05 52.5 6.0 108 211-321 68-193 (457)
297 1byi_A Dethiobiotin synthase; 87.9 1.1 3.8E-05 44.3 7.9 67 272-338 108-180 (224)
298 2xj4_A MIPZ; replication, cell 87.5 0.21 7.3E-06 52.2 2.3 34 272-307 103-136 (286)
299 3c8u_A Fructokinase; YP_612366 87.4 0.15 5.1E-06 50.6 1.0 23 211-233 23-45 (208)
300 3tr0_A Guanylate kinase, GMP k 87.2 0.14 4.9E-06 50.0 0.7 23 212-234 9-31 (205)
301 3ea0_A ATPase, para family; al 87.1 0.56 1.9E-05 47.1 5.1 66 272-339 118-186 (245)
302 1znw_A Guanylate kinase, GMP k 86.7 0.16 5.4E-06 50.3 0.7 23 212-234 22-44 (207)
303 3zvl_A Bifunctional polynucleo 86.6 0.49 1.7E-05 52.4 4.7 24 211-234 259-282 (416)
304 3a00_A Guanylate kinase, GMP k 86.6 0.16 5.5E-06 49.4 0.7 22 212-233 3-24 (186)
305 1zp6_A Hypothetical protein AT 86.6 0.17 5.7E-06 49.0 0.8 23 211-233 10-32 (191)
306 1kag_A SKI, shikimate kinase I 86.0 0.19 6.6E-06 47.7 0.9 25 211-235 5-29 (173)
307 1z6g_A Guanylate kinase; struc 85.7 0.19 6.6E-06 50.4 0.7 23 212-234 25-47 (218)
308 3co5_A Putative two-component 85.5 1.2 4E-05 41.2 6.0 23 211-233 28-50 (143)
309 4gp7_A Metallophosphoesterase; 85.4 0.19 6.5E-06 48.3 0.5 20 212-231 11-30 (171)
310 1s96_A Guanylate kinase, GMP k 84.6 0.23 7.8E-06 50.1 0.7 23 212-234 18-40 (219)
311 3tau_A Guanylate kinase, GMP k 84.6 0.23 7.8E-06 49.3 0.7 23 212-234 10-32 (208)
312 3asz_A Uridine kinase; cytidin 84.6 0.24 8.2E-06 48.8 0.8 22 212-233 8-29 (211)
313 3kb2_A SPBC2 prophage-derived 84.5 0.23 8E-06 46.8 0.7 24 212-235 3-26 (173)
314 1htw_A HI0065; nucleotide-bind 84.3 0.24 8.4E-06 47.2 0.7 23 212-234 35-57 (158)
315 2j41_A Guanylate kinase; GMP, 84.3 0.24 8.3E-06 48.4 0.7 22 212-233 8-29 (207)
316 3tif_A Uncharacterized ABC tra 84.2 0.24 8.3E-06 50.4 0.7 22 212-233 33-54 (235)
317 2p5t_B PEZT; postsegregational 84.0 1.2 4.1E-05 45.5 5.8 24 211-234 33-56 (253)
318 2pcj_A ABC transporter, lipopr 83.9 0.26 9E-06 49.7 0.7 22 212-233 32-53 (224)
319 4eun_A Thermoresistant glucoki 83.5 0.27 9.4E-06 48.2 0.7 25 211-235 30-54 (200)
320 3lw7_A Adenylate kinase relate 83.3 0.27 9.3E-06 46.2 0.6 22 212-234 3-24 (179)
321 3b85_A Phosphate starvation-in 83.3 0.32 1.1E-05 48.5 1.1 22 212-233 24-45 (208)
322 2bdt_A BH3686; alpha-beta prot 83.1 0.29 1E-05 47.3 0.7 22 212-233 4-25 (189)
323 2qor_A Guanylate kinase; phosp 82.9 0.3 1E-05 48.1 0.7 24 211-234 13-36 (204)
324 1knq_A Gluconate kinase; ALFA/ 82.6 0.31 1.1E-05 46.5 0.6 25 211-235 9-33 (175)
325 3lnc_A Guanylate kinase, GMP k 82.6 0.34 1.2E-05 48.7 1.0 22 212-233 29-51 (231)
326 3bos_A Putative DNA replicatio 82.5 0.46 1.6E-05 47.2 1.9 23 211-233 53-75 (242)
327 1ex7_A Guanylate kinase; subst 82.5 0.32 1.1E-05 47.7 0.7 23 211-233 2-24 (186)
328 4he6_A Peptidase family U32; u 82.4 2.2 7.5E-05 36.3 6.0 59 432-494 26-85 (89)
329 2cbz_A Multidrug resistance-as 82.4 0.32 1.1E-05 49.6 0.7 22 212-233 33-54 (237)
330 2onk_A Molybdate/tungstate ABC 82.3 0.33 1.1E-05 49.6 0.7 23 211-233 25-47 (240)
331 2pze_A Cystic fibrosis transme 82.2 0.33 1.1E-05 49.2 0.7 22 212-233 36-57 (229)
332 1g6h_A High-affinity branched- 82.0 0.33 1.1E-05 50.0 0.7 22 212-233 35-56 (257)
333 2bbw_A Adenylate kinase 4, AK4 81.9 0.36 1.2E-05 49.0 0.9 25 211-235 28-52 (246)
334 1b0u_A Histidine permease; ABC 81.9 0.34 1.2E-05 50.2 0.7 22 212-233 34-55 (262)
335 4g1u_C Hemin import ATP-bindin 81.9 0.33 1.1E-05 50.4 0.6 22 212-233 39-60 (266)
336 3ec2_A DNA replication protein 81.9 0.34 1.2E-05 46.5 0.6 23 211-233 39-61 (180)
337 1mv5_A LMRA, multidrug resista 81.8 0.34 1.2E-05 49.5 0.7 22 212-233 30-51 (243)
338 3gfo_A Cobalt import ATP-bindi 81.8 0.34 1.2E-05 50.6 0.7 22 212-233 36-57 (275)
339 3hr8_A Protein RECA; alpha and 81.7 1.6 5.6E-05 47.2 6.0 28 206-233 57-84 (356)
340 1sgw_A Putative ABC transporte 81.6 0.35 1.2E-05 48.5 0.7 22 212-233 37-58 (214)
341 3t61_A Gluconokinase; PSI-biol 81.6 0.37 1.3E-05 47.2 0.8 25 211-235 19-43 (202)
342 2v9p_A Replication protein E1; 81.6 0.36 1.2E-05 51.2 0.8 23 211-233 127-149 (305)
343 1ly1_A Polynucleotide kinase; 81.6 0.36 1.2E-05 45.8 0.7 21 212-232 4-24 (181)
344 1np6_A Molybdopterin-guanine d 81.5 0.35 1.2E-05 46.9 0.6 23 211-233 7-29 (174)
345 2f1r_A Molybdopterin-guanine d 81.5 0.24 8.4E-06 47.9 -0.5 23 211-233 3-25 (171)
346 2ff7_A Alpha-hemolysin translo 81.5 0.36 1.2E-05 49.5 0.7 22 212-233 37-58 (247)
347 1ji0_A ABC transporter; ATP bi 81.3 0.37 1.2E-05 49.2 0.7 22 212-233 34-55 (240)
348 2jaq_A Deoxyguanosine kinase; 81.0 0.37 1.3E-05 46.8 0.6 24 212-235 2-25 (205)
349 2d2e_A SUFC protein; ABC-ATPas 81.0 0.38 1.3E-05 49.4 0.7 22 212-233 31-52 (250)
350 2ghi_A Transport protein; mult 81.0 0.38 1.3E-05 49.7 0.7 22 212-233 48-69 (260)
351 3vaa_A Shikimate kinase, SK; s 81.0 0.38 1.3E-05 47.1 0.6 25 211-235 26-50 (199)
352 2eyu_A Twitching motility prot 80.9 0.39 1.3E-05 49.7 0.7 23 211-233 26-48 (261)
353 2vhj_A Ntpase P4, P4; non- hyd 80.9 0.7 2.4E-05 49.4 2.7 23 211-233 124-146 (331)
354 1cke_A CK, MSSA, protein (cyti 80.9 0.4 1.4E-05 47.7 0.7 24 211-234 6-29 (227)
355 3syl_A Protein CBBX; photosynt 80.7 3.2 0.00011 43.0 7.8 23 211-233 68-90 (309)
356 2olj_A Amino acid ABC transpor 80.6 0.4 1.4E-05 49.7 0.7 22 212-233 52-73 (263)
357 2kjq_A DNAA-related protein; s 80.6 0.47 1.6E-05 44.6 1.1 23 211-233 37-59 (149)
358 3aez_A Pantothenate kinase; tr 80.6 0.4 1.4E-05 51.0 0.7 23 211-233 91-113 (312)
359 1nks_A Adenylate kinase; therm 80.5 0.42 1.4E-05 45.9 0.7 23 212-234 3-25 (194)
360 2i3b_A HCR-ntpase, human cance 80.5 0.42 1.4E-05 46.9 0.8 22 212-233 3-24 (189)
361 4fcw_A Chaperone protein CLPB; 80.4 0.99 3.4E-05 47.1 3.7 23 211-233 48-70 (311)
362 1vpl_A ABC transporter, ATP-bi 80.4 0.41 1.4E-05 49.4 0.7 22 212-233 43-64 (256)
363 2yvu_A Probable adenylyl-sulfa 80.4 0.46 1.6E-05 45.8 1.0 23 211-233 14-36 (186)
364 2qi9_C Vitamin B12 import ATP- 80.4 0.41 1.4E-05 49.2 0.7 22 212-233 28-49 (249)
365 3trf_A Shikimate kinase, SK; a 80.3 0.42 1.4E-05 45.9 0.6 25 211-235 6-30 (185)
366 2if2_A Dephospho-COA kinase; a 80.3 0.44 1.5E-05 46.6 0.8 21 212-232 3-23 (204)
367 1qhx_A CPT, protein (chloramph 80.2 0.46 1.6E-05 45.3 0.9 23 212-234 5-27 (178)
368 2pt7_A CAG-ALFA; ATPase, prote 80.1 0.47 1.6E-05 50.8 1.1 23 211-233 172-194 (330)
369 2ixe_A Antigen peptide transpo 80.0 0.43 1.5E-05 49.7 0.7 22 212-233 47-68 (271)
370 3dl0_A Adenylate kinase; phosp 79.8 0.49 1.7E-05 46.8 1.0 24 212-235 2-25 (216)
371 2zu0_C Probable ATP-dependent 79.7 0.45 1.5E-05 49.4 0.7 22 212-233 48-69 (267)
372 2yz2_A Putative ABC transporte 79.7 0.45 1.5E-05 49.4 0.7 22 212-233 35-56 (266)
373 3pfi_A Holliday junction ATP-d 79.7 3.3 0.00011 43.7 7.5 23 211-233 56-78 (338)
374 1gtv_A TMK, thymidylate kinase 79.7 0.34 1.2E-05 47.6 -0.2 22 212-233 2-23 (214)
375 2nq2_C Hypothetical ABC transp 79.6 0.45 1.6E-05 49.0 0.7 22 212-233 33-54 (253)
376 3fb4_A Adenylate kinase; psych 79.5 0.47 1.6E-05 46.9 0.8 24 212-235 2-25 (216)
377 3uie_A Adenylyl-sulfate kinase 79.5 0.46 1.6E-05 46.5 0.7 23 211-233 26-48 (200)
378 2ihy_A ABC transporter, ATP-bi 79.5 0.46 1.6E-05 49.7 0.7 22 212-233 49-70 (279)
379 2ehv_A Hypothetical protein PH 79.4 0.5 1.7E-05 47.5 0.9 21 211-231 31-51 (251)
380 2jeo_A Uridine-cytidine kinase 79.3 0.47 1.6E-05 48.2 0.7 24 212-235 27-50 (245)
381 1via_A Shikimate kinase; struc 79.3 0.47 1.6E-05 45.3 0.6 24 212-235 6-29 (175)
382 4a74_A DNA repair and recombin 79.1 0.71 2.4E-05 45.7 1.9 28 206-233 21-48 (231)
383 2gza_A Type IV secretion syste 79.0 0.51 1.7E-05 51.2 0.9 23 211-233 176-198 (361)
384 3cm0_A Adenylate kinase; ATP-b 79.0 0.48 1.6E-05 45.5 0.6 23 212-234 6-28 (186)
385 2kdo_A Ribosome maturation pro 79.0 0.62 2.1E-05 47.7 1.4 65 608-674 174-238 (252)
386 2cve_A Hypothetical protein TT 78.7 4.2 0.00014 39.8 7.2 117 535-672 72-190 (191)
387 1vi7_A Hypothetical protein YI 78.5 2.6 9E-05 42.1 5.8 116 536-672 85-202 (217)
388 1kht_A Adenylate kinase; phosp 78.5 0.51 1.7E-05 45.3 0.6 23 212-234 5-27 (192)
389 2rhm_A Putative kinase; P-loop 78.4 0.52 1.8E-05 45.4 0.7 24 211-234 6-29 (193)
390 1jjv_A Dephospho-COA kinase; P 78.4 0.53 1.8E-05 46.2 0.7 21 212-232 4-24 (206)
391 3cr8_A Sulfate adenylyltranfer 78.3 0.65 2.2E-05 53.4 1.5 59 175-233 331-392 (552)
392 2qt1_A Nicotinamide riboside k 78.2 0.56 1.9E-05 46.1 0.8 23 211-233 22-44 (207)
393 1hqc_A RUVB; extended AAA-ATPa 78.1 4.8 0.00016 42.0 8.2 23 211-233 39-61 (324)
394 2b8t_A Thymidine kinase; deoxy 77.9 0.99 3.4E-05 45.5 2.6 22 212-233 14-35 (223)
395 2x8a_A Nuclear valosin-contain 77.8 0.65 2.2E-05 48.3 1.2 27 207-233 41-67 (274)
396 3iij_A Coilin-interacting nucl 77.8 0.56 1.9E-05 44.9 0.7 24 211-234 12-35 (180)
397 1sxj_A Activator 1 95 kDa subu 77.6 3.2 0.00011 47.1 7.1 24 211-234 78-101 (516)
398 1xjc_A MOBB protein homolog; s 77.6 0.56 1.9E-05 45.3 0.6 22 212-233 6-27 (169)
399 1ixz_A ATP-dependent metallopr 77.6 0.65 2.2E-05 47.2 1.1 27 207-233 46-72 (254)
400 1zuh_A Shikimate kinase; alpha 77.4 0.57 2E-05 44.3 0.6 25 211-235 8-32 (168)
401 2bbs_A Cystic fibrosis transme 77.4 0.59 2E-05 49.2 0.8 22 212-233 66-87 (290)
402 2oap_1 GSPE-2, type II secreti 77.2 0.63 2.2E-05 53.0 1.0 23 211-233 261-283 (511)
403 3nh6_A ATP-binding cassette SU 77.1 0.42 1.4E-05 50.7 -0.5 23 211-233 81-103 (306)
404 2plr_A DTMP kinase, probable t 77.1 0.59 2E-05 45.7 0.6 23 212-234 6-28 (213)
405 2pjz_A Hypothetical protein ST 77.0 0.6 2.1E-05 48.4 0.7 23 211-233 31-53 (263)
406 1sq5_A Pantothenate kinase; P- 76.9 0.63 2.1E-05 49.2 0.8 23 211-233 81-103 (308)
407 1tev_A UMP-CMP kinase; ploop, 76.8 0.6 2.1E-05 44.8 0.6 25 211-235 4-28 (196)
408 2vli_A Antibiotic resistance p 76.3 0.69 2.3E-05 44.1 0.8 24 212-235 7-30 (183)
409 3kta_A Chromosome segregation 76.3 0.68 2.3E-05 44.3 0.8 22 212-233 28-49 (182)
410 1lw7_A Transcriptional regulat 76.3 0.57 1.9E-05 50.8 0.3 23 211-233 171-193 (365)
411 1rz3_A Hypothetical protein rb 76.3 0.68 2.3E-05 45.5 0.8 22 211-232 23-44 (201)
412 1y63_A LMAJ004144AAA protein; 76.2 0.66 2.3E-05 44.8 0.7 23 211-233 11-33 (184)
413 3jvv_A Twitching mobility prot 76.2 0.65 2.2E-05 50.4 0.7 22 212-233 125-146 (356)
414 4e22_A Cytidylate kinase; P-lo 76.0 0.7 2.4E-05 47.3 0.8 25 211-235 28-52 (252)
415 2c95_A Adenylate kinase 1; tra 76.0 0.69 2.3E-05 44.6 0.8 25 211-235 10-34 (196)
416 3tui_C Methionine import ATP-b 75.9 0.67 2.3E-05 50.4 0.7 22 212-233 56-77 (366)
417 2vp4_A Deoxynucleoside kinase; 75.8 0.7 2.4E-05 46.4 0.8 23 211-233 21-43 (230)
418 2z0h_A DTMP kinase, thymidylat 75.7 0.68 2.3E-05 44.7 0.6 22 212-233 2-23 (197)
419 2bwj_A Adenylate kinase 5; pho 75.6 0.71 2.4E-05 44.6 0.8 25 211-235 13-37 (199)
420 2v54_A DTMP kinase, thymidylat 75.6 0.71 2.4E-05 44.9 0.7 24 211-234 5-28 (204)
421 3tlx_A Adenylate kinase 2; str 75.6 0.86 2.9E-05 46.3 1.4 25 211-235 30-54 (243)
422 3fvq_A Fe(3+) IONS import ATP- 75.5 0.72 2.5E-05 50.1 0.8 22 212-233 32-53 (359)
423 2pt5_A Shikimate kinase, SK; a 75.5 0.68 2.3E-05 43.6 0.5 24 212-235 2-25 (168)
424 1e4v_A Adenylate kinase; trans 75.4 0.71 2.4E-05 45.7 0.7 23 212-234 2-24 (214)
425 2w0m_A SSO2452; RECA, SSPF, un 75.2 1.1 3.7E-05 44.2 2.0 28 206-233 19-46 (235)
426 2iyv_A Shikimate kinase, SK; t 75.2 0.73 2.5E-05 44.2 0.7 24 212-235 4-27 (184)
427 1e6c_A Shikimate kinase; phosp 75.2 0.72 2.5E-05 43.5 0.6 24 212-235 4-27 (173)
428 1zd8_A GTP:AMP phosphotransfer 75.1 0.81 2.8E-05 45.7 1.0 25 211-235 8-32 (227)
429 2ewv_A Twitching motility prot 75.0 0.74 2.5E-05 50.2 0.7 23 211-233 137-159 (372)
430 1iy2_A ATP-dependent metallopr 75.0 0.84 2.9E-05 47.2 1.1 27 207-233 70-96 (278)
431 2bjv_A PSP operon transcriptio 74.9 4.9 0.00017 40.8 6.9 24 211-234 30-53 (265)
432 3tqc_A Pantothenate kinase; bi 74.8 0.75 2.6E-05 49.1 0.7 22 212-233 94-115 (321)
433 2wwf_A Thymidilate kinase, put 74.8 0.76 2.6E-05 45.0 0.7 23 211-233 11-33 (212)
434 1ukz_A Uridylate kinase; trans 74.5 0.82 2.8E-05 44.6 0.9 25 211-235 16-40 (203)
435 1nij_A Hypothetical protein YJ 74.4 0.87 3E-05 48.4 1.1 22 212-233 6-27 (318)
436 1z47_A CYSA, putative ABC-tran 74.3 0.78 2.7E-05 49.7 0.7 22 212-233 43-64 (355)
437 1qf9_A UMP/CMP kinase, protein 74.2 0.8 2.7E-05 43.9 0.7 25 211-235 7-31 (194)
438 2pbr_A DTMP kinase, thymidylat 74.2 0.77 2.6E-05 44.1 0.6 22 212-233 2-23 (195)
439 1odf_A YGR205W, hypothetical 3 74.2 0.79 2.7E-05 48.1 0.7 23 211-233 32-54 (290)
440 1zak_A Adenylate kinase; ATP:A 74.1 0.81 2.8E-05 45.5 0.7 25 211-235 6-30 (222)
441 2yyz_A Sugar ABC transporter, 73.9 0.81 2.8E-05 49.7 0.7 22 212-233 31-52 (359)
442 2chg_A Replication factor C sm 73.8 3.1 0.00011 40.1 4.9 22 212-233 40-61 (226)
443 1nn5_A Similar to deoxythymidy 73.8 0.83 2.9E-05 44.7 0.7 22 212-233 11-32 (215)
444 1uf9_A TT1252 protein; P-loop, 73.8 0.87 3E-05 44.2 0.8 23 211-233 9-31 (203)
445 2ze6_A Isopentenyl transferase 73.7 0.8 2.7E-05 46.9 0.6 24 212-235 3-26 (253)
446 2cdn_A Adenylate kinase; phosp 73.6 0.82 2.8E-05 44.6 0.6 25 211-235 21-45 (201)
447 2v1u_A Cell division control p 73.5 3.1 0.00011 44.3 5.3 23 211-233 45-67 (387)
448 2it1_A 362AA long hypothetical 73.5 0.84 2.9E-05 49.6 0.7 22 212-233 31-52 (362)
449 3rlf_A Maltose/maltodextrin im 73.3 0.85 2.9E-05 49.9 0.7 22 212-233 31-52 (381)
450 1aky_A Adenylate kinase; ATP:A 73.1 0.85 2.9E-05 45.2 0.6 24 211-234 5-28 (220)
451 1g29_1 MALK, maltose transport 73.1 0.87 3E-05 49.7 0.7 22 212-233 31-52 (372)
452 1gvn_B Zeta; postsegregational 73.1 0.93 3.2E-05 47.5 0.9 23 211-233 34-56 (287)
453 1v43_A Sugar-binding transport 72.9 0.88 3E-05 49.6 0.7 22 212-233 39-60 (372)
454 1ojl_A Transcriptional regulat 72.5 4 0.00014 42.8 5.7 23 211-233 26-48 (304)
455 3nwj_A ATSK2; P loop, shikimat 72.5 0.91 3.1E-05 46.6 0.7 25 211-235 49-73 (250)
456 1f2t_A RAD50 ABC-ATPase; DNA d 72.5 0.91 3.1E-05 42.6 0.6 21 213-233 26-46 (149)
457 1p9r_A General secretion pathw 72.1 0.93 3.2E-05 50.2 0.7 23 211-233 168-190 (418)
458 1xp8_A RECA protein, recombina 71.9 1.4 4.6E-05 48.0 1.9 27 207-233 71-97 (366)
459 1jbk_A CLPB protein; beta barr 71.9 0.98 3.3E-05 42.7 0.7 23 211-233 44-66 (195)
460 2pez_A Bifunctional 3'-phospho 71.8 0.96 3.3E-05 43.2 0.6 23 211-233 6-28 (179)
461 3sr0_A Adenylate kinase; phosp 71.8 0.97 3.3E-05 45.0 0.6 25 212-236 2-26 (206)
462 3gd7_A Fusion complex of cysti 70.8 1.1 3.7E-05 49.2 0.8 22 212-233 49-70 (390)
463 2xb4_A Adenylate kinase; ATP-b 70.8 1 3.5E-05 45.0 0.6 23 212-234 2-24 (223)
464 3d31_A Sulfate/molybdate ABC t 70.7 0.77 2.6E-05 49.6 -0.4 22 212-233 28-49 (348)
465 3cmu_A Protein RECA, recombina 70.3 4.7 0.00016 52.9 6.6 27 207-233 1424-1450(2050)
466 3be4_A Adenylate kinase; malar 70.1 1.1 3.9E-05 44.4 0.7 24 212-235 7-30 (217)
467 3ez9_A Para; DNA binding, wing 70.1 2.9 9.9E-05 45.7 4.1 79 272-353 247-337 (403)
468 1oxx_K GLCV, glucose, ABC tran 69.7 0.77 2.6E-05 49.7 -0.7 22 212-233 33-54 (353)
469 3io5_A Recombination and repai 69.5 6.7 0.00023 41.7 6.5 28 205-233 24-51 (333)
470 1vht_A Dephospho-COA kinase; s 69.4 1.1 3.9E-05 44.2 0.6 21 212-232 6-26 (218)
471 1in4_A RUVB, holliday junction 69.2 1.2 4.2E-05 47.5 0.7 24 211-234 52-75 (334)
472 1g8f_A Sulfate adenylyltransfe 69.2 2.4 8.1E-05 48.2 3.1 61 175-235 357-420 (511)
473 3a4m_A L-seryl-tRNA(SEC) kinas 69.1 1.2 4E-05 45.8 0.6 22 212-233 6-27 (260)
474 3bgw_A DNAB-like replicative h 69.0 1.6 5.6E-05 48.6 1.8 29 205-233 192-220 (444)
475 2axn_A 6-phosphofructo-2-kinas 69.0 3.4 0.00012 47.0 4.5 22 212-233 37-58 (520)
476 4a1f_A DNAB helicase, replicat 68.8 1.1 3.7E-05 48.3 0.2 28 206-233 42-69 (338)
477 1cr0_A DNA primase/helicase; R 68.8 1.3 4.4E-05 46.2 0.8 23 211-233 36-58 (296)
478 1ak2_A Adenylate kinase isoenz 68.6 1.2 4.2E-05 44.6 0.6 24 211-234 17-40 (233)
479 1cp2_A CP2, nitrogenase iron p 68.5 4.1 0.00014 41.4 4.6 66 272-337 115-186 (269)
480 2zr9_A Protein RECA, recombina 68.5 2.2 7.5E-05 46.0 2.6 28 206-233 57-84 (349)
481 2cvh_A DNA repair and recombin 68.4 2 6.9E-05 42.0 2.1 27 206-232 16-42 (220)
482 1uj2_A Uridine-cytidine kinase 67.9 1.4 4.7E-05 44.9 0.8 25 211-235 23-47 (252)
483 2p65_A Hypothetical protein PF 67.6 1.3 4.5E-05 41.7 0.5 23 211-233 44-66 (187)
484 3qf7_A RAD50; ABC-ATPase, ATPa 67.4 1.4 4.7E-05 47.9 0.7 21 213-233 26-46 (365)
485 1m7g_A Adenylylsulfate kinase; 67.4 1.4 4.7E-05 43.5 0.6 23 211-233 26-48 (211)
486 1lv7_A FTSH; alpha/beta domain 67.4 1.5 5.2E-05 44.5 1.0 25 209-233 44-68 (257)
487 3of5_A Dethiobiotin synthetase 67.3 9.9 0.00034 38.1 7.1 80 271-351 109-195 (228)
488 1qhl_A Protein (cell division 67.1 0.61 2.1E-05 47.3 -2.1 21 213-233 30-50 (227)
489 4eaq_A DTMP kinase, thymidylat 67.1 1.4 4.7E-05 44.4 0.6 24 211-234 27-50 (229)
490 2npi_A Protein CLP1; CLP1-PCF1 67.1 1.4 4.9E-05 49.3 0.8 23 211-233 139-161 (460)
491 2w58_A DNAI, primosome compone 66.5 1.5 5.1E-05 42.6 0.7 23 211-233 55-77 (202)
492 3ake_A Cytidylate kinase; CMP 66.4 1.4 4.9E-05 42.7 0.6 24 212-235 4-27 (208)
493 2yl4_A ATP-binding cassette SU 66.2 1.7 5.7E-05 50.4 1.2 23 211-233 371-393 (595)
494 3euj_A Chromosome partition pr 66.0 1.5 5.2E-05 49.4 0.7 22 212-233 31-52 (483)
495 2afh_E Nitrogenase iron protei 65.8 5.2 0.00018 41.3 4.8 66 272-337 118-189 (289)
496 3qf4_B Uncharacterized ABC tra 65.6 1.7 5.9E-05 50.4 1.1 23 211-233 382-404 (598)
497 2grj_A Dephospho-COA kinase; T 65.5 1.5 5.3E-05 42.9 0.6 23 211-233 13-35 (192)
498 3r20_A Cytidylate kinase; stru 65.4 1.6 5.4E-05 44.4 0.6 24 212-235 11-34 (233)
499 2orw_A Thymidine kinase; TMTK, 65.3 4.1 0.00014 39.4 3.6 22 212-233 5-26 (184)
500 3pg5_A Uncharacterized protein 65.2 4.2 0.00014 43.9 4.0 35 272-308 153-187 (361)
No 1
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=100.00 E-value=4.3e-96 Score=783.55 Aligned_cols=305 Identities=51% Similarity=0.853 Sum_probs=260.6
Q ss_pred EEeccceeecCCeEeCCCCCCCCCCCccCCCceEEEEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCC
Q psy1760 481 LITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDD 560 (793)
Q Consensus 481 ~i~gl~~i~iGdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~ 560 (793)
+++|++++.+|||||+.+++.++|++++++|+++|+|.|+++||+|++++++|+++|.++|.|++++||+|+|+++++++
T Consensus 2 av~Gl~~~~iGDTl~~~~~p~~L~~~~~~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~t~ 81 (332)
T 3e3x_A 2 NATGLGELKISDTICAQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDDPD 81 (332)
T ss_dssp ---------------------------CCCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSSTT
T ss_pred CccCCCCCccCCEEcCCCCcccCCCCCCCCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecchhhHHHHHHHHHhcCceEEEecCEEEEEEecCeeeCeEEEEEEEeCCcchHHHHHHhhccCceeeeeeecc
Q psy1760 561 SIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINE 640 (793)
Q Consensus 561 ~~~~v~g~GelhL~il~e~lrreg~e~~vs~P~V~yre~~g~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~ 640 (793)
+ |+|+|||||||+|++|+|||||+|+.+++|+|+|||++|++||||++++|+||++|+|+||++|++|||++.+|++.+
T Consensus 82 ~-~~v~G~GELHLeIl~ErLrrEg~ev~v~~P~V~YrEt~G~llEPi~~v~I~vPee~~G~Vm~~L~~RRG~i~~m~~~~ 160 (332)
T 3e3x_A 82 K-FRVSGRGELHLSILIENMRREGFELAVSRPEVIIXEEDGQLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPDG 160 (332)
T ss_dssp E-EEEEESSHHHHHHHHHHHHHHTBCEEECCCEECCEEETTEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEECS
T ss_pred e-EEEEeeCHHHHHHHHHHHHhcCceEEEeCCEEEEEEECCEEECcEEEEEEEECHHHHHHHHHHHHhhcccccCceECC
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEec-cCCCcCCCCccccceeeeccchhHHHHHHhccccccc
Q psy1760 641 KERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPF-YNKSKYDLGKRRNGVLISQYSGKAVAYSLWKLQDRGR 719 (793)
Q Consensus 641 ~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~-~~~~~~~i~~~~~g~~v~~~~g~~~~~~l~~~~~rg~ 719 (793)
+++++|+|.+|+|+|+||+++|+|+|+|+|+|+++|+||+|+ + |++..|.||+|||+++|++|+|||++||+||+
T Consensus 161 ~g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~p----g~i~~r~~g~lv~~~~g~~~~y~l~~~~~rg~ 236 (332)
T 3e3x_A 161 KGRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHXG----GNIGQRVNGVLIANAAGKALTNALFNLQERGR 236 (332)
T ss_dssp SSEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEECCC----CSCSCCCCCEEEESSCEECCHHHHHHHTTSEE
T ss_pred CCeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCceEcCC----CccccccCceEEEcCCCcEeHhhhhhHHhhce
Confidence 679999999999999999999999999999999999999999 8 99999999999999999999999999999999
Q ss_pred ccccccceeccceEEEeeCCCCCeeecccccccccccccCCcccceeeccccccchhh--hccccceeEEEee
Q psy1760 720 LFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLINIIKIILIY--KYMNGDVAEWLKA 790 (793)
Q Consensus 720 ~f~~~~~~vy~gmivg~~~~~~d~~~n~~~~k~~~~~r~~~~~~~~~~~~~~~~~le~--~~~~~de~~e~~~ 790 (793)
|||.||++||+|||||||+|+|||+|||||+||||||||||+|++++|+||+.||||+ |||+||||||||.
T Consensus 237 ~fv~pg~~vy~gmivg~~~r~~dl~vn~~k~k~ltn~r~~~~d~~~~l~~~~~~~le~~~~~i~~de~vevtp 309 (332)
T 3e3x_A 237 LFIGHGVEVYEGMVIGIHSRDNDLTVNALKGKQLTNVRASGTDDAQVLTPPIVMTLEQALEFIDDDELVEVTP 309 (332)
T ss_dssp ESCCTTCEECTTEEEEEESSSSCEEECSCC--------------CCCCCCCCCCCHHHHHHHCCTTEEEEECS
T ss_pred EEecCCCeEECCeEEEecCCcCCcEEecccccccccccccCCccceEecCCcccCHHHHHhhhcCCeeEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999999995
No 2
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=4.4e-84 Score=752.53 Aligned_cols=492 Identities=27% Similarity=0.412 Sum_probs=427.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC-----eEEEEecCCCccc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-----TRINIIDTPGHAD 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~-----~~i~iiDTPGh~d 285 (793)
+||+|+||+|||||||+++|++.++.+.... ...+++|+.+.|+++|+|+.+....+.|.. +.++|||||||.|
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISERE-KREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC------------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCccccc-ccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 6999999999999999999999877765443 356888999999999999999999988863 7999999999999
Q ss_pred chHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 286 FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 286 f~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
|..++.++++.+|++|+|+|+++|+++||..+|..+...++|+|+|+||+|+..++++++.+++.+.+ +.. ..
T Consensus 86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~l---g~~----~~ 158 (600)
T 2ywe_A 86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVL---GLD----PE 158 (600)
T ss_dssp GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTS---CCC----GG
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhh---CCC----cc
Confidence 99999999999999999999999999999999999999999999999999999888777777666543 221 12
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEe
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 445 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~ 445 (793)
+++++||++|. |+++|+++|.+++|+|..+.++||+++|++++++++.|+++++||++|+|++||.|.++
T Consensus 159 ~vi~vSAktg~----------GI~~Lle~I~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~ 228 (600)
T 2ywe_A 159 EAILASAKEGI----------GIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLM 228 (600)
T ss_dssp GCEECBTTTTB----------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCEEEET
T ss_pred cEEEEEeecCC----------CchHHHHHHHHhcccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCEEEec
Confidence 58999999998 99999999999999999888999999999999999999999999999999999999998
Q ss_pred cCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe-c---cceeecCCeEeCCCCC--CCCCCCccCCCceEEEEEe
Q psy1760 446 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT-G---IEEICIGSTICDPSKP--NGLPMLNIDEPTLTINFMV 519 (793)
Q Consensus 446 ~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~-g---l~~i~iGdtl~~~~~~--~~l~~~~~~~P~~~~~~~~ 519 (793)
+. + ...+|++|+.+.+ ++.+++++.|||++++. | ++++.+|||||+.++| .++|++++++|++++.+.|
T Consensus 229 ~~--~--~~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~P~v~~~i~p 303 (600)
T 2ywe_A 229 ST--G--KEYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPMVYAGIYP 303 (600)
T ss_dssp TT--T--EEEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSCCSSCCSCCCCCCCCEEEEEEE
T ss_pred cc--c--ceEeeecccccCC-CceECCEEecCceeeeeccccchhhccCCCEEEeCCCccccccCCCCCCCcEEEEEeec
Confidence 76 3 4678999998875 68999999999999884 4 5689999999999888 5899999999999999999
Q ss_pred cCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCC--CCeEEEEecchhhHHHHHHHHHhc-CceEEEecCEEEE
Q psy1760 520 NNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHD--DSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIF 596 (793)
Q Consensus 520 ~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~--~~~~~v~g~GelhL~il~e~lrre-g~e~~vs~P~V~y 596 (793)
++++ +.++|.++|.|+.++||+|+++++.+. ..||+|++||||||+|++|+|+|| |+|+.+++|+|+|
T Consensus 304 ~~~~---------d~~~l~~aL~kL~~eD~sl~~~~et~~~l~~g~~~~~~G~lHlei~~erl~re~~~~v~~~~P~V~y 374 (600)
T 2ywe_A 304 AEDT---------TYEELRDALEKYAINDAAIVYEPESSPALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTAPNVIY 374 (600)
T ss_dssp CTTC---------CHHHHHHHHHHHHTTCSSCEEEEEEETTTEEEEEEEESSHHHHHHHHHHHHHHSCCCEEECCCEECE
T ss_pred cccc---------cHHHHHHHHHHHhhhCCEEEEEECCccccccceEEEeccHHHHHHHHHHHHhhcCceEEEEeeeEEE
Confidence 8752 247899999999999999999975432 346999999999999999999987 9999999999999
Q ss_pred EEe---cC-------------------eeeCeEEEEEEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhh
Q psy1760 597 KTL---NG-------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRG 654 (793)
Q Consensus 597 re~---~g-------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~ 654 (793)
||+ +| .+||||++++|.||+||+|+||++|++|||++.+|++.+++++.|+|++|++|
T Consensus 375 reti~~~g~~~~~~~p~~~p~~~~~~~~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~P~~e 454 (600)
T 2ywe_A 375 RVKKKFTDEVIEVRNPMDFPDNAGLIEYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNTVYLEYEMPLSE 454 (600)
T ss_dssp EEEETTCSSCEEESSGGGSCSCGGGEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEEEHHH
T ss_pred EEEecCCCcEEEEeChhhCCCCCcccccccCCeEEEEEEecHHHHHHHHHHHHHcCcEEeccEEcCCCEEEEEEEEcHHH
Confidence 994 57 89999999999999999999999999999999999986667999999999999
Q ss_pred h-cchHHHHcccccceEEEEeEecceEeccCCCcCCCCccccceee-----------eccchhHHHHHHhcccccccccc
Q psy1760 655 L-IGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLI-----------SQYSGKAVAYSLWKLQDRGRLFI 722 (793)
Q Consensus 655 l-~gy~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~~~~~g~~v-----------~~~~g~~~~~~l~~~~~rg~~f~ 722 (793)
| +||+++|+|+|+|+|+|+++|+||+|+. ++++..+.||.+| +...|+..+-.|..+.+| ++|-
T Consensus 455 ~~~~~~~~L~s~T~G~g~~~~~f~~y~~~~---~~~~~~~~ng~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 530 (600)
T 2ywe_A 455 IIVDFHDKIKSISRGFASYDYEFIGYRPSD---LIKLTVLINKKPVDALSFIVHADRAQKFARRVAEKLRETIPR-QLFE 530 (600)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEEEEECC---EEEEEEEESSSBCGGGCEEEEGGGHHHHHHHHHHHHHHHSCC-CSSC
T ss_pred HHhhHHHhhhhcCCCeEEEEEEeccceEcc---ccccccccCCCEeccchhhhhhHHHHHHHHHHHHHHHhhCCc-cccc
Confidence 9 6999999999999999999999999985 6999999999999 788999999999999999 9999
Q ss_pred cccceeccceEEEeeC
Q psy1760 723 NHNDLVYEGMIIGIHS 738 (793)
Q Consensus 723 ~~~~~vy~gmivg~~~ 738 (793)
+|.|.+.++.||...+
T Consensus 531 ~~~qa~~~~~~~a~~~ 546 (600)
T 2ywe_A 531 VHIQVAKGGKVIASER 546 (600)
T ss_dssp EEEEEEETTEEEEEEE
T ss_pred eeeehhhCCEEEEeec
Confidence 9999999999999764
No 3
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2e-84 Score=776.86 Aligned_cols=448 Identities=28% Similarity=0.440 Sum_probs=387.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccc--cccccchhhccccceEEeeeeeEEeec-------CeEEEEecCC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYN-------GTRINIIDTP 281 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~--~~~~D~~~~e~erGiTi~~~~~~~~~~-------~~~i~iiDTP 281 (793)
|||+|+||+|||||||+++|+..+|.+.+.+.+. .+++|+.+.|++|||||.++..++.|+ ++.|||||||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 8999999999999999999999999887766654 689999999999999999999999996 5899999999
Q ss_pred CcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhc----
Q psy1760 282 GHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC---- 357 (793)
Q Consensus 282 Gh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~---- 357 (793)
||.||..|++++++.+|+||+||||.+|+++||+.+|++|.+.++|+|+||||||+..+++..+++++++.|...-
T Consensus 94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~~~~~~~ 173 (709)
T 4fn5_A 94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGHTPVPVQ 173 (709)
T ss_dssp SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHCSCEEESE
T ss_pred CCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhcccceeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987663200
Q ss_pred ----c-----------------------------------------------------c---------------------
Q psy1760 358 ----A-----------------------------------------------------T--------------------- 359 (793)
Q Consensus 358 ----~-----------------------------------------------------~--------------------- 359 (793)
. .
T Consensus 174 ~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~~~~~~ 253 (709)
T 4fn5_A 174 LAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSEAEIKE 253 (709)
T ss_dssp EEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCHHHHHH
T ss_pred cccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCccHHHHHH
Confidence 0 0
Q ss_pred ------ccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCc--------------------CCCCCCceEE
Q psy1760 360 ------EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK--------------------DNSNNPLQLQ 413 (793)
Q Consensus 360 ------~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~--------------------~~~~~p~~~~ 413 (793)
....-+|++++||.++. |++.||++|.+++|+|. +++++||.++
T Consensus 254 ~l~~~~~~~~~~pv~~gsa~~~~----------gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~ 323 (709)
T 4fn5_A 254 GLRLRTLACEIVPAVCGSSFKNK----------GVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSL 323 (709)
T ss_dssp HHHHHHHTTSCEEEEECBTTTTB----------THHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEE
T ss_pred HHHHhhhhceeeeeeeeecccCC----------chHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEE
Confidence 00012689999999987 99999999999999994 4678999999
Q ss_pred EEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCe
Q psy1760 414 IISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGST 493 (793)
Q Consensus 414 V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdt 493 (793)
|||+.++++.|+++++||+||+|++||.|++... | ...+|.+|+.++|.++.++++|.|||||+|.|++++.+|||
T Consensus 324 VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~--~--~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~~~gdT 399 (709)
T 4fn5_A 324 AFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVK--G--KKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDVTTGDT 399 (709)
T ss_dssp EEECCCBTTTBCCCEEEEEESCEETTCBCBCTTT--C--CCCBCCCEECCCSSCCCEESEECTTCEEEECSCSSCCTTCE
T ss_pred EEEeecccCCCceEEEeccCCCCCCCCEEEEecC--C--cEEeecceeEeecceeeEeeeecCCCeeeecCCCcCccCCE
Confidence 9999999999999999999999999999987654 3 46789999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCccCCCceEEEEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhH
Q psy1760 494 ICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHL 573 (793)
Q Consensus 494 l~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL 573 (793)
||+.+.+..++++++++|++++++.|.++ . +.+||.++|.|+.++||+|+++.++++++ ++|+|+|||||
T Consensus 400 l~~~~~~~~~~~~~~~~Pvv~vavep~~~---~------d~~kL~~~L~kL~~eDPsl~v~~~eetge-~vi~g~GELHL 469 (709)
T 4fn5_A 400 LCSIEKPIILERMDFPEPVISVAVEPKTK---A------DQEKMGIALGKLAQEDPSFRVKTDEESGQ-TIISGMGELHL 469 (709)
T ss_dssp EECSSSCCBCC----CCCSEEEEECBSST---T------THHHHHHHHHHHHHHCTTCEEEEETTTTE-EEEEESCHHHH
T ss_pred ecCCCccccCCCCCCCCcceEEEEecCCH---H------HhhhhHHHHHHHHHhCCeEEEEEecCCCc-EEEEEECHHHH
Confidence 99999999999999999999999998764 1 34789999999999999999999999999 99999999999
Q ss_pred HHHHHHHHhc-CceEEEecCEEEEEEe--c--------------------------------------------------
Q psy1760 574 TILIENMRRE-GYELSVSRPRVIFKTL--N-------------------------------------------------- 600 (793)
Q Consensus 574 ~il~e~lrre-g~e~~vs~P~V~yre~--~-------------------------------------------------- 600 (793)
+|++++|||+ |+|+.+++|+|+|||+ .
T Consensus 470 ei~l~rLr~e~gvev~vs~P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~g~~~~~~~f~~~~~~~ 549 (709)
T 4fn5_A 470 DIIVDRMKREFGVEANIGKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNITEGLVFENEVVGG 549 (709)
T ss_dssp HHHHHHHHTTTCCCBCCBCCCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCCBC-CCCBCCEEEEEECC-CC
T ss_pred HHHHHHHHHHhCceEEEeeceEEEEEEEecCCceecceeeeccCCcCcceeEEEEEeeccccccCCCcCceEEecccccc
Confidence 9999999976 9999999999999984 0
Q ss_pred --------------------C----------------------------------------------eeeCeEEEEEEEe
Q psy1760 601 --------------------G----------------------------------------------ELYEPYENLFVDI 614 (793)
Q Consensus 601 --------------------g----------------------------------------------~llEP~~~~~i~v 614 (793)
| +||||||+++|.|
T Consensus 550 ~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~veI~~ 629 (709)
T 4fn5_A 550 VVPKEYIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDSNEMAFKIAASMATKQLAQKGGGKVLEPIMKVEVVT 629 (709)
T ss_dssp SSCGGGHHHHHHHHHHHHHHCSSSSCCBSEEEEEEEECCCCTTTBCHHHHHHHHHHHHHTHHHHSCCEEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHhcCcccCCceeeeEEEEEEccccCCCCChHHHHHHHHHHHHHHHHHCCCEEECceEEEEEEE
Confidence 0 4799999999999
Q ss_pred CCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEecc
Q psy1760 615 EEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 615 p~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
|++|+|+||++|++|||++++|++. ++...|+|++|++|++||.++||++|+|+|+|+++|+||+++|
T Consensus 630 p~~~~G~V~~~L~~RRG~i~~~~~~-~~~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~~F~~y~~vp 697 (709)
T 4fn5_A 630 PEDYMGDVMGDLNRRRGLIQGMEDT-VSGKVIRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKYAEAP 697 (709)
T ss_dssp ETTTHHHHHHHHGGGTCEEEEEEEC-SSEEEEEEEEESGGGTTHHHHHHHHTTTCCEEECCEEEEEECC
T ss_pred CHHHHHHHHHHHHhcCCEEeceEec-CCCEEEEEEecHHHhhCHHHHHHhhCCCeEEEEEEECCcccCC
Confidence 9999999999999999999999984 5667899999999999999999999999999999999999998
No 4
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=1.9e-82 Score=740.34 Aligned_cols=491 Identities=25% Similarity=0.399 Sum_probs=421.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec-----CeEEEEecCCCccc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-----GTRINIIDTPGHAD 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~-----~~~i~iiDTPGh~d 285 (793)
+||+|+||+|||||||+++|++.++.+... ....+++|+.+.|+++|+|+.+....+.|. ++.++|||||||.|
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~-~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDR-EMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC---------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccc-cccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 799999999999999999999988877654 245788899999999999999999999886 38999999999999
Q ss_pred chHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 286 FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 286 f~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
|..++.++++.+|++|+|+|+++|++.||..+|..+...++|+|+|+||+|+.+++++++.+++.+.+ +.. ..
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~l---g~~----~~ 156 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIV---GID----AT 156 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHT---CCC----CT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHh---CCC----cc
Confidence 99999999999999999999999999999999999999999999999999999888777777776654 221 12
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEe
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 445 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~ 445 (793)
+++++||++|. |+++|+++|.+++|+|..+.++||+++|+++.++++.|+++++||++|+|++||.+.+.
T Consensus 157 ~vi~vSAktg~----------GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~ 226 (599)
T 3cb4_D 157 DAVRCSAKTGV----------GVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVM 226 (599)
T ss_dssp TCEEECTTTCT----------THHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEEEET
T ss_pred eEEEeecccCC----------CchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEEEec
Confidence 58999999998 99999999999999999889999999999999999999999999999999999999998
Q ss_pred cCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe-c---cceeecCCeEeCCCCC--CCCCCCccCCCceEEEEEe
Q psy1760 446 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT-G---IEEICIGSTICDPSKP--NGLPMLNIDEPTLTINFMV 519 (793)
Q Consensus 446 ~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~-g---l~~i~iGdtl~~~~~~--~~l~~~~~~~P~~~~~~~~ 519 (793)
+. + ...+|.+|+.+.+ ++++++++.|||++++. | ++++.+|||||+.+++ .++|.+.+++|++.+.+.+
T Consensus 227 ~~--~--~~~~v~~i~~~~~-~~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~P~v~~~i~p 301 (599)
T 3cb4_D 227 ST--G--QTYNADRLGIFTP-KQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGLFP 301 (599)
T ss_dssp TT--C--CEEECCEEEEESS-SEEECSEECTTCEEEEECCCSSGGGSCTTCEEEESSSCCSSCCTTCCCCCCCEEEEEEE
T ss_pred cc--c--ceeEEeeeeeccC-CceECCEEcCCCeeEeeccccccccCccCCEeeecCCccccccccccCCCcceEEEEEe
Confidence 76 3 3678999998885 48999999999998874 4 5688999999999888 7899999999999999998
Q ss_pred cCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCC--CCeEEEEecchhhHHHHHHHHHhc-CceEEEecCEEEE
Q psy1760 520 NNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHD--DSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIF 596 (793)
Q Consensus 520 ~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~--~~~~~v~g~GelhL~il~e~lrre-g~e~~vs~P~V~y 596 (793)
++++ +.+++.++|.|+.++||+|+++++.+. ..||++++||+|||+|++|+|+|| |+|+.+++|+|+|
T Consensus 302 ~~~~---------d~~~l~~aL~kL~~eD~sl~~~~et~~~l~~gfr~g~lG~lhlei~~erl~~e~~~~~~~~~P~V~y 372 (599)
T 3cb4_D 302 VSSD---------DYEAFRDALGKLSLNDASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVY 372 (599)
T ss_dssp SSGG---------GHHHHHHHHHHHHTTCSSCEEEEEEETTTEEEEEEEESSHHHHHHHHHHHHHTSCCCEEECCCEECE
T ss_pred cCcc---------CHHHHHHHHHHHHhhCcEEEEEeccccccccceEEEeccHHHHHHHHHHHHHHcCceEEEEeeeEEE
Confidence 7642 246899999999999999999865432 345899999999999999999987 9999999999999
Q ss_pred EEe--cC------------------eeeCeEEEEEEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhh-
Q psy1760 597 KTL--NG------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGL- 655 (793)
Q Consensus 597 re~--~g------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l- 655 (793)
||+ +| .+||||++++|.+|+||+|+||++|++|||++++|++. +++++|+|++|++||
T Consensus 373 reti~~g~~~~~~~p~~~p~~~~~~~llEP~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~~-~~~~~i~~~~P~~e~~ 451 (599)
T 3cb4_D 373 EVETTSREVIYVDSPSKLPAVNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYH-GNQVALTYEIPMAEVV 451 (599)
T ss_dssp EEEESSSCEEEESSGGGSCCGGGEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECC-TTEEEEEEEEEHHHHH
T ss_pred EEEecCCceEEecChhhCCCccccchhhccceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEec-CCeEEEEEEecHHHHH
Confidence 994 67 79999999999999999999999999999999999995 469999999999999
Q ss_pred cchHHHHcccccceEEEEeEecceEeccCCCcCCCCccccceee-----------eccchhHHHHHHhcccccccccccc
Q psy1760 656 IGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLI-----------SQYSGKAVAYSLWKLQDRGRLFINH 724 (793)
Q Consensus 656 ~gy~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~~~~~g~~v-----------~~~~g~~~~~~l~~~~~rg~~f~~~ 724 (793)
+||+++|+|+|+|+|+|+++|+||+|+. ++++..+.||.+| +...|+..+-.|..+.+| ++|-+|
T Consensus 452 ~~~~~~l~s~T~G~~~~~~~~~~y~~~~---~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 527 (599)
T 3cb4_D 452 LDFFDRLKSTSRGYASLDYNFKRFQASD---MVRVDVLINGERVDALALITHRDNSQNRGRELVEKMKDLIPR-QQFDIA 527 (599)
T ss_dssp TTTHHHHHHHTTSCCEEEEEEEEEEECC---EEEEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHHHHSCS-CSSCEE
T ss_pred HHHHHhhhhcCCcEEEEEEEecCceEec---ccccccccCCcEecccceeccHHHHHHHHHHHHHHHHhhCCh-hhccch
Confidence 6999999999999999999999999985 6999999999999 788999999999999999 999999
Q ss_pred cceeccceEEEeeC
Q psy1760 725 NDLVYEGMIIGIHS 738 (793)
Q Consensus 725 ~~~vy~gmivg~~~ 738 (793)
.|.+.++.||...+
T Consensus 528 ~q~~~~~~~~~~~~ 541 (599)
T 3cb4_D 528 IQAAIGTHIIARST 541 (599)
T ss_dssp EEEEETTEEEEEEE
T ss_pred hhhhhCCEEEEeec
Confidence 99999999999764
No 5
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=1.3e-86 Score=786.05 Aligned_cols=450 Identities=23% Similarity=0.315 Sum_probs=413.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccc--cccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~--~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 288 (793)
|||+|+||+|||||||+++|+..+|.+++.+.+. .+++|+.+.|++|||||.++..++.|++++|||||||||.||..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 7999999999999999999999999998887765 57899999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhc-----------
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC----------- 357 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~----------- 357 (793)
+++++++.+|+||+||||.+|+++||+.+|++|.++++|+|+||||||+..+++..+.+++++.|....
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 162 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPN 162 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCSCGG
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeEeecc
Confidence 999999999999999999999999999999999999999999999999999999999999887663100
Q ss_pred -----------------ccc--------------------------cccCccEEEeecCCCCcccccccccCCchhhHHH
Q psy1760 358 -----------------ATE--------------------------EQLDFPVIYTSALHGYANENSKARQGNMIPLFEA 394 (793)
Q Consensus 358 -----------------~~~--------------------------~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~ 394 (793)
.++ ...-+|++++||+++. |+++||++
T Consensus 163 ~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~----------Gv~~LLd~ 232 (638)
T 3j25_A 163 VCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNI----------GIDNLIEV 232 (638)
T ss_dssp GCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCC----------SHHHHHHH
T ss_pred ccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCC----------CchhHhhh
Confidence 000 0012799999999998 99999999
Q ss_pred HHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEeccc
Q psy1760 395 ILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEA 474 (793)
Q Consensus 395 I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a 474 (793)
|.+++|+|..+.++||+++||++.+|++.|+++++||+||+|++||.|++... .+.+|.+++.+.|.++.++++|
T Consensus 233 i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~-----~~~~v~~l~~~~g~~~~~v~~a 307 (638)
T 3j25_A 233 ITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEK-----EKIKVTEMYTSINGELCKIDRA 307 (638)
T ss_dssp HHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCC-----CCSSBCCCCSSCCCCBSCCCTT
T ss_pred hhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccC-----cceeEEeeeccccccccccccc
Confidence 99999999998899999999999999999999999999999999999987543 2478999999999999999999
Q ss_pred CCCcEEEEeccceeecCCeEeCCCCCCCCCCCccCCCceEEEEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEE
Q psy1760 475 LSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVT 554 (793)
Q Consensus 475 ~aGdIv~i~gl~~i~iGdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~ 554 (793)
.|||||+|.| ..+.+|||+++...+..++.+.+++|++++++.|.+. . +..||.++|.|+.++||+|+++
T Consensus 308 ~aGdIv~i~g-~~~~~~~tl~d~~~~~~~~~i~~p~Pv~~~aiep~~~----~-----d~~kL~~aL~kL~~eDPsl~v~ 377 (638)
T 3j25_A 308 YSGEIVILQN-EFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEPSKP----E-----QREMLLDALLEISDSDPLLRYY 377 (638)
T ss_dssp BCCCCSCCCS-SSCSSEECSSSSSSGGGCSCCCCCCCCCCCEEECCSH----H-----HHHHHHHHHHHHHHTCTTCCCC
T ss_pred ccceEEEEec-cccccCceecCCCCcccccCccCCCccceeeeccCCh----H-----HHHHHHHHHHHHhhcCCeeEEE
Confidence 9999999988 5788999999988888888899999999999987542 1 3478999999999999999999
Q ss_pred EecCCCCeEEEEecchhhHHHHHHHHHhc-CceEEEecCEEEEEEec---------------------------------
Q psy1760 555 QNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFKTLN--------------------------------- 600 (793)
Q Consensus 555 ~~~~~~~~~~v~g~GelhL~il~e~lrre-g~e~~vs~P~V~yre~~--------------------------------- 600 (793)
.++++++ ++|+|||||||+|++++|||+ |+|+.+++|+|+|||+-
T Consensus 378 ~~~et~e-~il~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrEti~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~~~g 456 (638)
T 3j25_A 378 VDSTTHE-IILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPLKNAEYTIHIEVPPNPFWASIGLSVSPLPLGSG 456 (638)
T ss_dssp CCSSSSC-CCCCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCBCCCSCCEECCCCCSSSCCCCCCCCEECCCCCSSCC
T ss_pred ecCCCce-EEEccccHHHHHHHHHHHHHHhCCcEEEeCCceeEEEEecccceEEEEEecCCCCceEEEEEEEecccCCCC
Confidence 9999999 999999999999999999976 99999999999999840
Q ss_pred ---------------------------------------------------------------------------CeeeC
Q psy1760 601 ---------------------------------------------------------------------------GELYE 605 (793)
Q Consensus 601 ---------------------------------------------------------------------------g~llE 605 (793)
.+|||
T Consensus 457 ~~f~~~~~~~~~~~~~~~av~~g~~~~~~~Gl~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LLE 536 (638)
T 3j25_A 457 MQYESSVSLGYLNQSFQNAVMEGIRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLE 536 (638)
T ss_dssp CCCCCCCCSSSTTHHHHHHHHHHHHHHHHSSSSCCCCCSCCCCCCCCCCSSCSCCSHHHHHHHHHHHHHHHHHHCCBCCC
T ss_pred cEEEeeeecccchhhhhhHHhhhHHHHHhccccCCcccceEEEEEECcccCCCCCHHHHHHHHHHHHHHHHHHCCCEEEc
Confidence 04689
Q ss_pred eEEEEEEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEeccCC
Q psy1760 606 PYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNK 685 (793)
Q Consensus 606 P~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~~~ 685 (793)
|||+++|.||++|+|+||++|++|||++++|++ .++++.|+|++|++||+||.++|||+|+|+|+|+++|+||++++
T Consensus 537 Pi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~-~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~vp-- 613 (638)
T 3j25_A 537 PYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQL-KNNEVILSGEIPARCIQEYRSDLTFFTNGRSVCLTELKGYHVTT-- 613 (638)
T ss_dssp CCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCC-CTTEEEEECCCSSCCHHHHHHHHHHTTTTCCEEECCCCCCCCCC--
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCcEEeCeEe-cCCeEEEEEEECHHHhhCHHHHHHhhCCCcEEEEEEECceEECC--
Confidence 999999999999999999999999999999998 57899999999999999999999999999999999999999999
Q ss_pred CcCCCC
Q psy1760 686 SKYDLG 691 (793)
Q Consensus 686 ~~~~i~ 691 (793)
|+..
T Consensus 614 --gdp~ 617 (638)
T 3j25_A 614 --GEPV 617 (638)
T ss_dssp --SCCS
T ss_pred --CCcc
Confidence 7653
No 6
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=5.6e-79 Score=727.14 Aligned_cols=448 Identities=29% Similarity=0.447 Sum_probs=409.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccc--cccccchhhccccceEEeeeeeEEeecC-------eEEEEecCC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNG-------TRINIIDTP 281 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~--~~~~D~~~~e~erGiTi~~~~~~~~~~~-------~~i~iiDTP 281 (793)
+||+|+||+|+|||||+++|+..++.+...+.+. .+++|+.+.|+++|+|+......+.|++ +.++|||||
T Consensus 11 ~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTP 90 (704)
T 2rdo_7 11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTP 90 (704)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCC
Confidence 7999999999999999999998877776554443 4788999999999999999999999988 999999999
Q ss_pred CcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhh-----
Q psy1760 282 GHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL----- 356 (793)
Q Consensus 282 Gh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l----- 356 (793)
||.||..++.++++.+|++|+|+|+++|++.||..+|+.+...++|.++|+||+|+..+++.++++++++.|...
T Consensus 91 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~~~~~~~ 170 (704)
T 2rdo_7 91 GHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQ 170 (704)
T ss_pred CccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCCCceeEE
Confidence 999999999999999999999999999999999999999999999999999999999988888888887765321
Q ss_pred ----------------------------ccc----------------------------c--------------------
Q psy1760 357 ----------------------------CAT----------------------------E-------------------- 360 (793)
Q Consensus 357 ----------------------------~~~----------------------------~-------------------- 360 (793)
+.. +
T Consensus 171 ~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~~~l~~ 250 (704)
T 2rdo_7 171 LAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAEIKG 250 (704)
T ss_pred ccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHH
Confidence 000 0
Q ss_pred -------cccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcC--------------------CCCCCceEE
Q psy1760 361 -------EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD--------------------NSNNPLQLQ 413 (793)
Q Consensus 361 -------~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~--------------------~~~~p~~~~ 413 (793)
...-+|++++||+++. |++.||++|.+++|+|.. +.++||.++
T Consensus 251 ~l~~~~~~~~~~Pv~~gSa~~~~----------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 320 (704)
T 2rdo_7 251 ALRQRVLNNEIILVTCGSAFKNK----------GVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSAL 320 (704)
T ss_pred HHHHHHHhCCeeEEEEeecccCc----------cHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEE
Confidence 0012799999999997 999999999999999854 257899999
Q ss_pred EEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCe
Q psy1760 414 IISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGST 493 (793)
Q Consensus 414 V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdt 493 (793)
|||+.++++.|+++++||+||+|++||.|++.+. + ...+|++|+.++|.+++++++|.|||||+|.|++++.+|||
T Consensus 321 VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~--~--~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~~~GdT 396 (704)
T 2rdo_7 321 AFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVK--A--ARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDT 396 (704)
T ss_pred EEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCC--C--cEEEeceEEEEeCCCceEcceeCCCCEEEEeCcccCccCCE
Confidence 9999999999999999999999999999998765 3 46899999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCccCCCceEEEEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhH
Q psy1760 494 ICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHL 573 (793)
Q Consensus 494 l~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL 573 (793)
||+.+++.+++++++++|+++++|.|+++. +.++|.++|.|+.++||+|+|++++++++ ++++|||||||
T Consensus 397 l~~~~~~~~l~~~~~~~Pv~~~ai~p~~~~---------d~~kl~~~L~~L~~eDp~l~v~~~~etge-~il~g~GelhL 466 (704)
T 2rdo_7 397 LCDPDAPIILERMEFPEPVISIAVEPKTKA---------DQEKMGLALGRLAKEDPSFRVWTDEESNQ-TIIAGMGELHL 466 (704)
T ss_pred EeCCCcccccCCCCCCCceEEEEEEECChH---------HHHHHHHHHHHHHhhCCEEEEEEcCCCCc-EEEEeCCHHHH
Confidence 999988889999999999999999998752 24789999999999999999999999999 99999999999
Q ss_pred HHHHHHHHhc-CceEEEecCEEEEEEe----c--------------------------------C---------------
Q psy1760 574 TILIENMRRE-GYELSVSRPRVIFKTL----N--------------------------------G--------------- 601 (793)
Q Consensus 574 ~il~e~lrre-g~e~~vs~P~V~yre~----~--------------------------------g--------------- 601 (793)
+|++++|||+ |+|+.+++|+|+|||+ . |
T Consensus 467 ei~~~rL~~~f~v~v~~~~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~~~~g~g~~f~~~~~g~~~p 546 (704)
T 2rdo_7 467 DIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIP 546 (704)
T ss_pred HHHHHHHHHHhCceEEEeCCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECCCCCCCCCcEEEEeccCCcCc
Confidence 9999999976 9999999999999993 1 1
Q ss_pred ----------------------------------------------------------------eeeCeEEEEEEEeCCc
Q psy1760 602 ----------------------------------------------------------------ELYEPYENLFVDIEEI 617 (793)
Q Consensus 602 ----------------------------------------------------------------~llEP~~~~~i~vp~e 617 (793)
++|||||+++|.||++
T Consensus 547 ~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~ 626 (704)
T 2rdo_7 547 GEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEE 626 (704)
T ss_pred HHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEeccccCCCCcHHHHHHHHHHHHHHHHHhcCCeeeeeEEEEEEEeCHH
Confidence 6899999999999999
Q ss_pred chHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEecc
Q psy1760 618 NQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 618 ~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
|+|+||++|++|||++++|++. ++++.|+|++|++||+||.++|||+|+|+|+|+++|+||++++
T Consensus 627 ~~G~v~~~l~~rrG~i~~~~~~-~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~ 691 (704)
T 2rdo_7 627 NTGDVIGDLSRRRGMLKGQESE-VTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAP 691 (704)
T ss_pred HHhHHHHHHHhCCceEeCceec-CCeEEEEEEecHHHHhhHHHHhHhhcCCceEEEEEeCcceECC
Confidence 9999999999999999999994 5789999999999999999999999999999999999999998
No 7
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2e-78 Score=721.83 Aligned_cols=448 Identities=27% Similarity=0.443 Sum_probs=387.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccc--cccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~--~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 288 (793)
++|+|+||+|+|||||+++|+..++.+...+.+. .+++|+.+.|+++|+|+......+.|+++.++|||||||.+|..
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 90 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTV 90 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchHH
Confidence 6999999999999999999998777665443332 46789999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhc-----------
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC----------- 357 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~----------- 357 (793)
++.++++.+|++|+|+|+.++++.++..+|+.+...++|+|+|+||+|+..+++.++++++++.+....
T Consensus 91 ~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~~~ipisa~~ 170 (693)
T 2xex_A 91 EVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAED 170 (693)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEESEEEECCGG
T ss_pred HHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCCceeEEeecccCC
Confidence 999999999999999999999999999999999999999999999999998888888888877653200
Q ss_pred ---------------cc-c-c-----------------------------------------------------------
Q psy1760 358 ---------------AT-E-E----------------------------------------------------------- 361 (793)
Q Consensus 358 ---------------~~-~-~----------------------------------------------------------- 361 (793)
.. + .
T Consensus 171 ~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~ 250 (693)
T 2xex_A 171 EFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIRQATTN 250 (693)
T ss_dssp GCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Confidence 00 0 0
Q ss_pred ccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcC--------------------CCCCCceEEEEEEeeeC
Q psy1760 362 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD--------------------NSNNPLQLQIISLEYSS 421 (793)
Q Consensus 362 ~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~--------------------~~~~p~~~~V~~~~~~~ 421 (793)
..-+||+++||+++. |++.||++|.+++|+|.. +.++||.++|||+.+++
T Consensus 251 ~~~~Pv~~gSA~~~~----------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~ 320 (693)
T 2xex_A 251 VEFYPVLCGTAFKNK----------GVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDP 320 (693)
T ss_dssp TSCEEEEECBTTTTB----------SHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEET
T ss_pred CCeeeEEEeecccCc----------CHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeecC
Confidence 001699999999998 999999999999999964 36789999999999999
Q ss_pred CCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCeEeCCCCCC
Q psy1760 422 YLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPN 501 (793)
Q Consensus 422 ~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~~~~~ 501 (793)
+.|+++++||+||+|++||.|++... + ...||.+|+.++|.+++++++|.|||||+|.|++++.+|||||+.+++.
T Consensus 321 ~~g~~~~~RV~sG~l~~g~~v~~~~~--~--~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdTl~~~~~~~ 396 (693)
T 2xex_A 321 YVGKLTFFRVYSGTMTSGSYVKNSTK--G--KRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDI 396 (693)
T ss_dssp TTEEEEEEEEEESEEETTEEEEETTT--T--EEEEECCEEEECSSCEEECSEEETTCEEEEESCSSCCTTCEEEETTCCE
T ss_pred CCceEEEEEEEeeeEecCCEEEecCC--C--ceEEeceEEEEeCCCceEccccCcCCEEEEeCcccCccCCEEecCCCcc
Confidence 99999999999999999999998754 3 4689999999999999999999999999999999999999999998888
Q ss_pred CCCCCccCCCceEEEEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHH
Q psy1760 502 GLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMR 581 (793)
Q Consensus 502 ~l~~~~~~~P~~~~~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lr 581 (793)
+++++++++|++++++.|+++. +.+||.++|.|+.++||+|+|++++++++ ++++|||||||+|++++||
T Consensus 397 ~~~~~~~~~Pv~~~av~p~~~~---------d~~kl~~~L~~l~~eDp~l~~~~~~et~e-~il~g~Gelhlei~~~rL~ 466 (693)
T 2xex_A 397 ILESMEFPEPVIHLSVEPKSKA---------DQDKMTQALVKLQEEDPTFHAHTDEETGQ-VIIGGMGELHLDILVDRMK 466 (693)
T ss_dssp ECCCCSSCSCSEEEEEEESSHH---------HHHHHHHHHHHHHHHCTTCEEEC---CCC-EEEEESSHHHHHHHHHHHH
T ss_pred ccCCcCCCCceEEEEEEeCCch---------hHHHHHHHHHHHHhhCCeEEEEEcCCCCc-EEEEeCCHHHHHHHHHHHH
Confidence 8999999999999999987641 35789999999999999999999999999 9999999999999999999
Q ss_pred hc-CceEEEecCEEEEEEe-c-----------------------------------------------------------
Q psy1760 582 RE-GYELSVSRPRVIFKTL-N----------------------------------------------------------- 600 (793)
Q Consensus 582 re-g~e~~vs~P~V~yre~-~----------------------------------------------------------- 600 (793)
|+ |+|+.+++|+|+|||+ .
T Consensus 467 ~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~ 546 (693)
T 2xex_A 467 KEFNVECNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPREYIPSVEAGLK 546 (693)
T ss_dssp HHSCCCEEECCCEECCEEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECCTTCCCEEEECCCTTSSCGGGHHHHHHHHH
T ss_pred HHhCceEEEeCCeEEEEEEeccccceeEeeccccCCCCceEEEEEEEEECCCCCCCEEEecCCCCcCCHHHHHHHHHHHH
Confidence 75 9999999999999994 0
Q ss_pred ---------------------------------------------------CeeeCeEEEEEEEeCCcchHHHHHHhhcc
Q psy1760 601 ---------------------------------------------------GELYEPYENLFVDIEEINQGIIMQKLNYR 629 (793)
Q Consensus 601 ---------------------------------------------------g~llEP~~~~~i~vp~e~~G~v~~~l~~r 629 (793)
.++|||||+++|.||++|+|+||++|++|
T Consensus 547 ~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~r 626 (693)
T 2xex_A 547 DAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSR 626 (693)
T ss_dssp HHHHTCSSSSCCBCSEEEEEEEEECCTTTCCHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHT
T ss_pred HHHhcCCccCCceeeEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHHHHHhC
Confidence 16899999999999999999999999999
Q ss_pred CceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEecc
Q psy1760 630 GGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 630 rG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
||++++|++. ++++.|+|++|++||+||.++|||+|+|+|+|+++|+||++++
T Consensus 627 rG~i~~~~~~-~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~ 679 (693)
T 2xex_A 627 RGRVDGMEPR-GNAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVP 679 (693)
T ss_dssp TCEEEEEEEE-TTEEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECC
T ss_pred CcEeeccccc-CCeEEEEEEeCHHHHHhHHHHhHHhcCCceEEEEEeCcceECC
Confidence 9999999995 5799999999999999999999999999999999999999998
No 8
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=2e-78 Score=721.66 Aligned_cols=448 Identities=27% Similarity=0.433 Sum_probs=346.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccc--cccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~--~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 288 (793)
+||+|+||+|+|||||+++|+..++.+...+.+. .+++|+...|+++|+|+......+.|+++.++|||||||.+|..
T Consensus 13 ~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 92 (691)
T 1dar_A 13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTI 92 (691)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTCHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchHH
Confidence 6999999999999999999998877765554443 47889999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhh------------
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL------------ 356 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l------------ 356 (793)
++.++++.+|++|+|+|+.++.+.|+..+|+.+...++|+++|+||+|+..+++.++++++++.+...
T Consensus 93 ~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~~~~Pi~~~~ 172 (691)
T 1dar_A 93 EVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGRED 172 (691)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEEEESCGG
T ss_pred HHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCccceeccccCCC
Confidence 99999999999999999999999999999999999999999999999999888888888877765310
Q ss_pred --------------------cc----------------------------ccc---------------------------
Q psy1760 357 --------------------CA----------------------------TEE--------------------------- 361 (793)
Q Consensus 357 --------------------~~----------------------------~~~--------------------------- 361 (793)
+. .++
T Consensus 173 ~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~~~~~~~ 252 (691)
T 1dar_A 173 TFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTID 252 (691)
T ss_dssp GCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred cccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Confidence 00 000
Q ss_pred ccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcC------------------CCCCCceEEEEEEeeeCCC
Q psy1760 362 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD------------------NSNNPLQLQIISLEYSSYL 423 (793)
Q Consensus 362 ~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~------------------~~~~p~~~~V~~~~~~~~~ 423 (793)
..-+||+++||++|. |+++||++|.+++|+|.. ++++||.++|||+.++++.
T Consensus 253 ~~~~Pv~~gSA~~~~----------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~ 322 (691)
T 1dar_A 253 LKITPVFLGSALKNK----------GVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYV 322 (691)
T ss_dssp TSCEEEEECBGGGTB----------SHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEEEETTT
T ss_pred CcEeEEEEeecccCc----------CHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEEEcCCC
Confidence 001799999999998 999999999999999964 3678999999999999999
Q ss_pred ceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCeEeCCCCC-CC
Q psy1760 424 GKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKP-NG 502 (793)
Q Consensus 424 G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~~~~-~~ 502 (793)
|+++++||+||+|++||.|++... + ...+|.+|+.++|.+++++++|.|||||+|.|++++.+|||||+.+++ .+
T Consensus 323 G~~~~~RV~sG~l~~g~~v~~~~~--~--~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~ 398 (691)
T 1dar_A 323 GRLTFIRVYSGTLTSGSYVYNTTK--G--RKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVI 398 (691)
T ss_dssp EEEEEEEEEESEEESSCEEEETTT--T--EEEECCEEEEECSSCEEEESEEETTCEEEEECCSSCCTTCEEEETTCCCCB
T ss_pred CcEEEEEEeeeeEecCCEEEecCC--C--cEEEEceEEEEeCCCceEcceecCCCEEEEeCcccCccCCEEecCCCcccc
Confidence 999999999999999999998755 3 468999999999999999999999999999999999999999998888 88
Q ss_pred CCCCccCCCceEEEEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHh
Q psy1760 503 LPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRR 582 (793)
Q Consensus 503 l~~~~~~~P~~~~~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrr 582 (793)
++++++++|+++++|.|+++. + .+||.++|.|+.++||+|+|++++++++ ++++|||||||+|++++|||
T Consensus 399 l~~~~~~~P~~~~ai~p~~~~---d------~~kl~~~L~~l~~eDp~l~v~~~~et~e-~i~~g~Gelhlei~~~rL~~ 468 (691)
T 1dar_A 399 LESIEVPEPVIDVAIEPKTKA---D------QEKLSQALARLAEEDPTFRVSTHPETGQ-TIISGMGELHLEIIVDRLKR 468 (691)
T ss_dssp CC-----------------------------------------CCCCSCEEEC-----C-EEEEESCCC---------CC
T ss_pred cCCCCCCCceEEEEEEECCch---h------HHHHHHHHHHHHhhCCeEEEEEcCCCCc-EEEEeCCHHHHHHHHHHHHH
Confidence 999999999999999987752 2 3689999999999999999999999999 99999999999999999997
Q ss_pred c-CceEEEecCEEEEEEe-c------------------------------------------------------------
Q psy1760 583 E-GYELSVSRPRVIFKTL-N------------------------------------------------------------ 600 (793)
Q Consensus 583 e-g~e~~vs~P~V~yre~-~------------------------------------------------------------ 600 (793)
+ |+|+.+++|+|+|||+ .
T Consensus 469 ~~~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~ 548 (691)
T 1dar_A 469 EFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEE 548 (691)
T ss_dssp CEEEBTTTBCCCBCCEEECSSCEEEEEEEEECCSSSCEEEEEEEEEEECCTTCCEEEEECCCTTSSCTTTHHHHHHHHHH
T ss_pred hhCceEEEeCCeEEEEEeeccceeeeeeeccccCCCCceEEEEEEEEECCCCCCCEEeecccCCcCcHHHHHHHHHHHHH
Confidence 6 9999999999999994 0
Q ss_pred --------------------------------------------------CeeeCeEEEEEEEeCCcchHHHHHHhhccC
Q psy1760 601 --------------------------------------------------GELYEPYENLFVDIEEINQGIIMQKLNYRG 630 (793)
Q Consensus 601 --------------------------------------------------g~llEP~~~~~i~vp~e~~G~v~~~l~~rr 630 (793)
.++|||||+++|.||++|+|+||++|++||
T Consensus 549 a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~rr 628 (691)
T 1dar_A 549 AMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARR 628 (691)
T ss_dssp HTTSCTTTSCCBCSEEEEEEEECCCTTTBCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHTT
T ss_pred HHhcCCccCCceeeEEEEEEeeeccccCcchHHHHHHHHHHHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHHHHHCC
Confidence 168999999999999999999999999999
Q ss_pred ceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEecc
Q psy1760 631 GDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 631 G~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
|++++|++. ++++.|+|++|++||+||.++|||+|+|+|+|+++|+||++++
T Consensus 629 G~i~~~~~~-~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~ 680 (691)
T 1dar_A 629 GQILGMEPR-GNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVP 680 (691)
T ss_dssp CCEEEEEEE-TTEEEEEEEEETTTSSSHHHHHHHHTTTCCEEEEEEEEEEECC
T ss_pred ceeecceec-CCeEEEEEEecHHHHhhHHHHHHHhcCCceEEEEEeCcceECC
Confidence 999999995 5799999999999999999999999999999999999999998
No 9
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=5.1e-75 Score=690.07 Aligned_cols=445 Identities=22% Similarity=0.380 Sum_probs=403.5
Q ss_pred cceeeeecccCCcceehhhhhhccCcccccccc--ccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNI--NARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v--~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 288 (793)
++|+|+||+|+|||||+++|++..+.....+.+ ...++|..+.++++|+|+......+.++++.++|||||||.+|..
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~ 89 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG 89 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred cEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHH
Confidence 689999999999999999999877665444443 246778888899999999999999999999999999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhh------------
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL------------ 356 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l------------ 356 (793)
++.++++.+|++++|+|+.+|+.+|++.+|+.+...++|+|+|+||+|+. ++..++.+++.+.+...
T Consensus 90 ~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~~~~~~~~Pi~~~~~ 168 (665)
T 2dy1_A 90 EIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLGPILPIDLPLYEGGK 168 (665)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHCSEEECEEEEEETTE
T ss_pred HHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhCCcceEEeeecCCCc
Confidence 99999999999999999999999999999999999999999999999999 87888888887765400
Q ss_pred -----------------c---------------------------cccc---------------------------ccCc
Q psy1760 357 -----------------C---------------------------ATEE---------------------------QLDF 365 (793)
Q Consensus 357 -----------------~---------------------------~~~~---------------------------~l~~ 365 (793)
+ ..++ ..-+
T Consensus 169 ~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~~~~~~ 248 (665)
T 2dy1_A 169 WVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVRRGLLY 248 (665)
T ss_dssp EEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCE
T ss_pred ccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCee
Confidence 0 0000 0116
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCC-CCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEE
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN-SNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVI 444 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~-~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~ 444 (793)
|++++||++|. |+++||++|.+++|+|... .++||.++|+++.++++.|+++++||++|+|++||.|++
T Consensus 249 pv~~~SA~~~~----------Gv~~Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g~~v~~ 318 (665)
T 2dy1_A 249 PVALASGEREI----------GVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQS 318 (665)
T ss_dssp EEEECBTTTTB----------SHHHHHHHHHHHSCCHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBC
T ss_pred EEEEeecccCc----------CHHHHHHHHHHhCCCccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecCCEEEc
Confidence 99999999998 9999999999999999754 689999999999999999999999999999999999986
Q ss_pred ecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCeEeCCCCC--CCCCCCccCCCceEEEEEecCC
Q psy1760 445 MNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKP--NGLPMLNIDEPTLTINFMVNNS 522 (793)
Q Consensus 445 ~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~~~~--~~l~~~~~~~P~~~~~~~~~~~ 522 (793)
.+ ...+|++|+.+.|.+++++++|.|||||+|.|++++.+|||||+.+++ .+++++++++|++++++.|+++
T Consensus 319 ~~------~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~~~~~i~p~~~ 392 (665)
T 2dy1_A 319 EA------GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFARLPDPNVPVALHPKGR 392 (665)
T ss_dssp TT------SCEEESSEEEEETTEEEEESCEETTCEEEESSCTTCCTTCEEESSSCCCGGGSCCCCCCCCCEEEEEEESSH
T ss_pred CC------CeEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccCccCCEEecCCCccccccCCCCCCCceEEEEEEECCh
Confidence 53 358999999999999999999999999999999999999999998887 7889999999999999998763
Q ss_pred CCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHhcCceEEEecCEEEEEEe-c-
Q psy1760 523 PLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTL-N- 600 (793)
Q Consensus 523 p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrreg~e~~vs~P~V~yre~-~- 600 (793)
+ +.++|.++|.|+.++||+|+|++++++++ ++++|||||||+|++++||++|+|+.+++|+|+|||+ .
T Consensus 393 ---~------d~~kl~~~L~~l~~edp~l~v~~~~et~e-~i~~g~Gelhlei~~~rl~~~~v~v~~~~p~V~yrEti~~ 462 (665)
T 2dy1_A 393 ---T------DEARLGEALRKLLEEDPSLKLERQEETGE-LLLWGHGELHLATAKERLQDYGVEVEFSVPKVPYRETIKK 462 (665)
T ss_dssp ---H------HHHHHHHHHHHHHHHCTTSEEEECTTTCC-EEEEESSHHHHHHHHHHHHHTTCCEEEECCCCCCEEEESS
T ss_pred ---h------hHHHHHHHHHHHHHhCCeEEEEEcCCCCC-EEEEecCHHHHHHHHHHHHHCCceEEEeCCEEEEEEeecc
Confidence 1 35789999999999999999999999999 9999999999999999999779999999999999994 0
Q ss_pred -----------------------------------------------------------------------------C--
Q psy1760 601 -----------------------------------------------------------------------------G-- 601 (793)
Q Consensus 601 -----------------------------------------------------------------------------g-- 601 (793)
|
T Consensus 463 ~~~~~~~~~k~~gg~g~~~~v~~~~eP~~g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~ 542 (665)
T 2dy1_A 463 VAEGQGKYKKQTGGHGQYGDVWLRLEPASEYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSY 542 (665)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEEECSSCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSCCBCSEEEEEEEEEC
T ss_pred ceeeeeecccccCCCcceEEEEEEEEECCCCEEeeeccCCcchHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeeec
Confidence 0
Q ss_pred ---------------------------eeeCeEEEEEEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhh
Q psy1760 602 ---------------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRG 654 (793)
Q Consensus 602 ---------------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~ 654 (793)
++|||||+++|.||++|+|+||++|++|||++++|++. ++++.|+|++|++|
T Consensus 543 h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~-~~~~~i~a~~P~~e 621 (665)
T 2dy1_A 543 HEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQE-GALSVVHAEVPLAE 621 (665)
T ss_dssp CTTTBCHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEE-TTEEEEEEEEEGGG
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEec-CCeEEEEEEECHHH
Confidence 58999999999999999999999999999999999995 57999999999999
Q ss_pred hcchHHHHcccccceEEEEeEecceEecc
Q psy1760 655 LIGFQNEFITLTRGTGLISHVFEEYAPFY 683 (793)
Q Consensus 655 l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 683 (793)
|+||.++|||+|+|+|+|+++|+||++++
T Consensus 622 ~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 650 (665)
T 2dy1_A 622 VLEYYKALPGLTGGAGAYTLEFSHYAEVP 650 (665)
T ss_dssp CTTHHHHHHHHHTTCCEEEEEEEEEEECC
T ss_pred HhhHHHHhHhhcCCcEEEEEEeCceeECC
Confidence 99999999999999999999999999998
No 10
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=1.3e-72 Score=684.19 Aligned_cols=467 Identities=27% Similarity=0.399 Sum_probs=383.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec----------------CeE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN----------------GTR 274 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~----------------~~~ 274 (793)
+||+|+||+|+|||||+++|+..++.+........+++|+.+.|+++|+|+.+....+.|+ ++.
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence 7999999999999999999999877776554444578899999999999999988888886 789
Q ss_pred EEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCC----C-------hh
Q psy1760 275 INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA----R-------PE 343 (793)
Q Consensus 275 i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a----~-------~~ 343 (793)
++|||||||.+|..++.++++.+|++|+|+|+.+|++.||..+|+.+...++|+|+|+||+|+..+ + +.
T Consensus 100 i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e~~~~~~ 179 (842)
T 1n0u_A 100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFA 179 (842)
T ss_dssp EEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHHHHHHHH
T ss_pred EEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999732 2 33
Q ss_pred hhHhHHHHHHhhhccc------ccccCccEEEeecCCCCccc-----------------------------cc-----cc
Q psy1760 344 WVVDATFDLFDKLCAT------EEQLDFPVIYTSALHGYANE-----------------------------NS-----KA 383 (793)
Q Consensus 344 ~v~~~i~~~~~~l~~~------~~~l~~Pvi~~SA~~g~~~~-----------------------------~~-----~~ 383 (793)
+.+++++..+..+... ......++.++||++||+.. +. ..
T Consensus 180 ~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~ 259 (842)
T 1n0u_A 180 RTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKWTN 259 (842)
T ss_dssp HHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETTTTEEES
T ss_pred HHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCCCCeEEE
Confidence 4444454444322110 11123468899998886421 00 00
Q ss_pred ---c--------------------------------------cCC--------------------------chhhHHHHH
Q psy1760 384 ---R--------------------------------------QGN--------------------------MIPLFEAIL 396 (793)
Q Consensus 384 ---~--------------------------------------~~g--------------------------i~~Ll~~I~ 396 (793)
+ ..| ++.||++|+
T Consensus 260 ~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~LLd~i~ 339 (842)
T 1n0u_A 260 KDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIV 339 (842)
T ss_dssp CSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHHHHHHHH
T ss_pred ecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHHHHHHHH
Confidence 0 011 278999999
Q ss_pred hhcCcCc-------------------------CCCCCCceEEEEEEeeeCCCce-EEEEEEeecccccCCEEEEecCC--
Q psy1760 397 KYVPVHK-------------------------DNSNNPLQLQIISLEYSSYLGK-IGIGRILSGRIKSLQDVVIMNGP-- 448 (793)
Q Consensus 397 ~~lp~p~-------------------------~~~~~p~~~~V~~~~~~~~~G~-v~~grV~sG~lk~G~~v~~~~~~-- 448 (793)
+++|+|. +++++||.++|||+.++++.|+ ++++||+||+|++||.|++.+.+
T Consensus 340 ~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~~~~~n 419 (842)
T 1n0u_A 340 LHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYV 419 (842)
T ss_dssp HHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTTCC
T ss_pred HhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEecccccc
Confidence 9999995 3568899999999999999996 99999999999999999887541
Q ss_pred CCCCC---ceeEeEEEEeecCceEEecccCCCcEEEEeccceeecC-CeEeCCCCCCCCCCCccC-CCceEEEEEecCCC
Q psy1760 449 DDKPN---KAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIG-STICDPSKPNGLPMLNID-EPTLTINFMVNNSP 523 (793)
Q Consensus 449 ~g~~~---~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iG-dtl~~~~~~~~l~~~~~~-~P~~~~~~~~~~~p 523 (793)
.++.. .+||++|+.++|.+++++++|.|||||+|.|++++.+| +|||+.+.+.+++++.++ +|++++++.|.+.
T Consensus 420 ~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~~~~l~~~~~~~~Pv~~~avep~~~- 498 (842)
T 1n0u_A 420 PGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVKNA- 498 (842)
T ss_dssp SSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTTCCCBCCCCCCCSCCEEEEEEESSG-
T ss_pred CCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCCCccccccCCCCCCceEEEEEEECCH-
Confidence 12222 58999999999999999999999999999999998665 799998888889999888 5999999998653
Q ss_pred CCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHhc--CceEEEecCEEEEEEe--
Q psy1760 524 LAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE--GYELSVSRPRVIFKTL-- 599 (793)
Q Consensus 524 ~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrre--g~e~~vs~P~V~yre~-- 599 (793)
. +.+||.++|.|+.++||+|+|+++ +++| ++|+|||||||+|++++|||+ |+|+.+++|+|+|||+
T Consensus 499 --~------d~~kl~~~L~kL~~eDp~l~v~~~-etge-~il~g~GelHLei~~~rL~~~f~~vev~~~~P~V~yrETi~ 568 (842)
T 1n0u_A 499 --N------DLPKLVEGLKRLSKSDPCVLTYMS-ESGE-HIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVE 568 (842)
T ss_dssp --G------GHHHHHHHHHHHHHHCTTCEEEEC-TTSC-EEEEESSHHHHHHHHHHHHHTTSCSCEEEECCCCCCEEEES
T ss_pred --H------HHHHHHHHHHHHHHhCCcEEEEEc-CCCC-EEEEeccHHHHHHHHHHHHHHhcCCceEecCcEEEEEEeec
Confidence 1 457899999999999999999998 7899 999999999999999999974 9999999999999994
Q ss_pred ----c---------------------------------------------------------------------------
Q psy1760 600 ----N--------------------------------------------------------------------------- 600 (793)
Q Consensus 600 ----~--------------------------------------------------------------------------- 600 (793)
.
T Consensus 569 ~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~~~p~~~~~~~f~~ 648 (842)
T 1n0u_A 569 SESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVID 648 (842)
T ss_dssp SCCSSCEEEECTTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEEESSTTTSSEEEEE
T ss_pred cccccceeeccCCcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhceeeeccCCCCCcEEEe
Confidence 0
Q ss_pred ---C----------------------------------------------------------------------eeeCeE
Q psy1760 601 ---G----------------------------------------------------------------------ELYEPY 607 (793)
Q Consensus 601 ---g----------------------------------------------------------------------~llEP~ 607 (793)
| +|||||
T Consensus 649 ~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~a~~~a~p~LLEPi 728 (842)
T 1n0u_A 649 QTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEPV 728 (842)
T ss_dssp CCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHHHHHSCEEEEEEE
T ss_pred cCCCccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHHHHHHHhCCCeEEeeE
Confidence 1 789999
Q ss_pred EEEEEEeCCcchHHHHHHhhccCceeeeeeecc-CCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEeccCCC
Q psy1760 608 ENLFVDIEEINQGIIMQKLNYRGGDLKNIEINE-KERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKS 686 (793)
Q Consensus 608 ~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~-~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~~~~ 686 (793)
|+|+|.||++|+|+||++|++|||++++|++.+ +++..|++++|++||+||.++|||+|+|+|+|+++|+||++++
T Consensus 729 ~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~~F~~y~~vp--- 805 (842)
T 1n0u_A 729 FLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLG--- 805 (842)
T ss_dssp EEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECC---
T ss_pred EEEEEEccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEEEEeccceeCC---
Confidence 999999999999999999999999999999853 3579999999999999999999999999999999999999999
Q ss_pred cCCCCc
Q psy1760 687 KYDLGK 692 (793)
Q Consensus 687 ~~~i~~ 692 (793)
+++..
T Consensus 806 -~~~~~ 810 (842)
T 1n0u_A 806 -SDPLD 810 (842)
T ss_dssp -SCTTC
T ss_pred -CCccc
Confidence 66543
No 11
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=1.2e-69 Score=629.28 Aligned_cols=364 Identities=22% Similarity=0.350 Sum_probs=311.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccc------cccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN------ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA 284 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~------~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~ 284 (793)
|||+|+||+|||||||+++||..+|.+.+.+.+. ++++|+.+.|++|||||.++..++.|++++|||||||||.
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 8999999999999999999999999988766654 4789999999999999999999999999999999999999
Q ss_pred cchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhc-------
Q psy1760 285 DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC------- 357 (793)
Q Consensus 285 df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~------- 357 (793)
||..+++++|+++|+||+||||.+|+++||+.+|++|.++++|+|+||||||+..+++.++++++++.|..--
T Consensus 112 DF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~~p~~~Pi 191 (548)
T 3vqt_A 112 DFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMTWPI 191 (548)
T ss_dssp GCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSEEEESEEEE
T ss_pred HHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCCceEeEEeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999998874200
Q ss_pred -------------------c-----------------cc----------------------------------cccCccE
Q psy1760 358 -------------------A-----------------TE----------------------------------EQLDFPV 367 (793)
Q Consensus 358 -------------------~-----------------~~----------------------------------~~l~~Pv 367 (793)
. .+ ...-+||
T Consensus 192 g~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~g~~~PV 271 (548)
T 3vqt_A 192 GMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGELTPV 271 (548)
T ss_dssp SCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHTTSEEEE
T ss_pred ecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHhCCccee
Confidence 0 00 0012799
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHhhcCcCcC---------CCCCCceEEEEEEeee---CCCceEEEEEEeecc
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD---------NSNNPLQLQIISLEYS---SYLGKIGIGRILSGR 435 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~---------~~~~p~~~~V~~~~~~---~~~G~v~~grV~sG~ 435 (793)
+++||+++. |+++||++|.+++|+|.. +.++||.++||++.++ ++.|+++++||+||+
T Consensus 272 ~~gSA~~~~----------Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~RV~sG~ 341 (548)
T 3vqt_A 272 FFGSAINNF----------GVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGT 341 (548)
T ss_dssp EECBGGGTB----------SHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEEEEESC
T ss_pred eecccccCc----------CHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEEEecce
Confidence 999999998 999999999999999964 3468999999999887 899999999999999
Q ss_pred cccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCeEeCCCCCCCCCCCccCCCceEE
Q psy1760 436 IKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTI 515 (793)
Q Consensus 436 lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~~~~~~l~~~~~~~P~~~~ 515 (793)
|++||.|++... ..++||.+++.+.|.+++++++|.|||||+|.|++++.+|||||+.+++.+++++++++|++++
T Consensus 342 l~~g~~v~~~~~----~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~~~~~~~~~~~i~~~~P~~~~ 417 (548)
T 3vqt_A 342 FTRGMRLKHHRT----GKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKFVGIPNFAPEHFR 417 (548)
T ss_dssp EETTCEEEETTT----TEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEESSSSCCCBCCCEEECCSEEE
T ss_pred ecCCCEEEeecc----ccccccchhhhhccccccccCEEecCCEEEecCCccCccCCEecCCCCccccCCCCCCCCccee
Confidence 999999999765 3478999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHhc-CceEE-----E
Q psy1760 516 NFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELS-----V 589 (793)
Q Consensus 516 ~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrre-g~e~~-----v 589 (793)
++.++++ + ...++.++|.|+.++|| +++.+++++++ ++|+|||||||+|++++|||| |+|+. +
T Consensus 418 av~p~~~---~------d~~kl~~~L~~L~eed~-~~v~~~~et~e-~il~g~GeLHLeI~~erL~~ey~vev~~e~v~~ 486 (548)
T 3vqt_A 418 RVRLKNP---L------KAKQLQKGLEQLAEEGA-VQLFRPLVNND-YILGAVGVLQFDVIVARLADEYGVDAVYEGVST 486 (548)
T ss_dssp EEEESCG---G------GHHHHHHHHHHHHHTTS-SEEEEESSSCC-CEEEESSTHHHHHHHHHHHHHHCCCEEEEECSC
T ss_pred eeeeCCc---h------hHHHHHHHHHHhhhcCc-eeEEEECCCCc-EEEEEECHHHHHHHHHHHHHHhCCCEEEeeccc
Confidence 9998764 2 24689999999998887 67888889999 999999999999999999975 99876 5
Q ss_pred ecCEEEEEEe
Q psy1760 590 SRPRVIFKTL 599 (793)
Q Consensus 590 s~P~V~yre~ 599 (793)
++|+|+|||+
T Consensus 487 ~~P~V~YrEt 496 (548)
T 3vqt_A 487 HTARWVYCED 496 (548)
T ss_dssp CEEEEEECSC
T ss_pred cCceEEecCC
Confidence 7899999996
No 12
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=100.00 E-value=6.9e-65 Score=536.99 Aligned_cols=207 Identities=34% Similarity=0.556 Sum_probs=172.6
Q ss_pred CcceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccC
Q psy1760 8 PVSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG 87 (793)
Q Consensus 8 ~~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~ 87 (793)
..+|||+||||+||||||||+|+||+|+.+||||+|||||+||||||||+|+|||+++||++.+|+|+++++||.+|||+
T Consensus 4 ~~~Gil~vdKP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~aTKl~~~l~~~~K~Y~~~~~lG~~TdT~ 83 (316)
T 1sgv_A 4 TGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTE 83 (316)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGTTTSCEEEEEEEEETEEETTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccccccccccCCCCCeEEEEEEECHHHhHHHHhCcCCcEEEEEEEECCccCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecC---
Q psy1760 88 DIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI--- 164 (793)
Q Consensus 88 d~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~--- 164 (793)
|++|+|++++++.++|++++++++++|+|+++|+||+|||+|+||+|||||||+|++|++++|+++||++++++|+.
T Consensus 84 D~eG~v~~~~~~~~~t~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkrlYelAR~G~~ve~~~R~v~I~~i~ll~~~~~~~ 163 (316)
T 1sgv_A 84 DAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQ 163 (316)
T ss_dssp BTTSCEEEECCCTTCCHHHHHHHHHHTCEEC----------------------------CCCCCCEEEEEEEEEEEEETT
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHhccccEEEeCCHHHhcccCChhHHHHHhCCCcccccceEEEEEEEEEEEeeccCC
Confidence 99999999998888999999999999999999999999999999999999999999999999999999999999863
Q ss_pred -CceeeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760 165 -PYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA 214 (793)
Q Consensus 165 -~~~~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa 214 (793)
+.+.|++.||+|||||+|++|||+.|+|++|+..|||+++|+|.++..+.
T Consensus 164 ~p~~~~~v~CskGTYIRsLa~DiG~~Lg~~a~~~~LrRt~~G~F~~~~a~t 214 (316)
T 1sgv_A 164 LIDIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQARS 214 (316)
T ss_dssp EEEEEEEEEESCCTTHHHHHHHHHHHHTSCEEEEEEEEEEETTEEGGGCBC
T ss_pred CceEEEEEEECCCCcHHHHHHHHHHHhCCCEEEeeEEEEEEccCcHHHccC
Confidence 68999999999999999999999999999999999999999998876553
No 13
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=100.00 E-value=3.1e-64 Score=531.35 Aligned_cols=205 Identities=36% Similarity=0.574 Sum_probs=199.8
Q ss_pred cceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccCC
Q psy1760 9 VSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 88 (793)
Q Consensus 9 ~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~d 88 (793)
.||||+||||+|||||+||+|+||+|+.+|+||+|||||+||||||||+|+|||+++||++.+|+|+++++||.+|||+|
T Consensus 2 ~~Gil~vdKP~G~TS~~vv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~aTKl~~~l~~~~K~Y~a~~~lG~~TdT~D 81 (309)
T 1r3e_A 2 KHGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLKKVYWVKMRLGLITETFD 81 (309)
T ss_dssp CCEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGGTTSCEEEEEEEEETEEESSSB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccceecccccCCCCcceeEEEEECHHHhHHHHhCccCcEEEEEEEECCcccCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCCcee
Q psy1760 89 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLT 168 (793)
Q Consensus 89 ~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~~~~ 168 (793)
++|+|+++++.. +|++++++++++|+|+++|+||+|||+|+||+|||+|||+|+++++++|+++||++++++|+.+.+.
T Consensus 82 ~eG~v~~~~~~~-~t~~~i~~~l~~f~G~i~Q~PP~~SAvKv~GkraYelAR~G~~ve~~~R~v~I~~i~ll~~~~p~~~ 160 (309)
T 1r3e_A 82 ITGEVVEERECN-VTEEEIREAIFSFVGEYDQVPPAYSAKKYKGERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDVS 160 (309)
T ss_dssp TTSCEEEECCCC-CCHHHHHHHHHSSSEEEEECCCSSSSCEETTEEHHHHHHTTCCCCCCCEEEEEEEEEEEEEETTEEE
T ss_pred CCCCEEEEecCC-CCHHHHHHHHHhccceEEEeCChHHhcccCCccHHHHHhCCCcccccceEEEEEEEEEEEeeCCEEE
Confidence 999999998775 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760 169 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA 214 (793)
Q Consensus 169 ~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa 214 (793)
|++.||+|||||+|++|||..|++++|+..|||+++|+|.++..+.
T Consensus 161 ~~v~CskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~~~~a~~ 206 (309)
T 1r3e_A 161 FRVEVSPGTYIRSLCMDIGYKLGCGATAVELVRESVGPHTIEESLN 206 (309)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTSCEEEEEEEEEEETTEEGGGCBC
T ss_pred EEEEECCCchHHHHHHHHHHHhCCCEEEEEEEEEEEcCCcHHHccC
Confidence 9999999999999999999999999999999999999998876543
No 14
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=100.00 E-value=9.8e-64 Score=531.35 Aligned_cols=207 Identities=48% Similarity=0.824 Sum_probs=202.5
Q ss_pred CCcceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeecc
Q psy1760 7 SPVSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTET 86 (793)
Q Consensus 7 ~~~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t 86 (793)
++++|||+||||+|||||+||+++||+|+.+||||+|||||+||||||||+|+|||+++||++.+|+|+++++||.+|||
T Consensus 22 ~~~~Gil~vdKP~G~TS~dvv~~vr~~l~~kKvGH~GTLDP~AtGvL~i~~G~aTKl~~~l~~~~K~Y~a~~~lG~~TdT 101 (327)
T 1k8w_A 22 MDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDT 101 (327)
T ss_dssp CCCCEEEEEEECTTCCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGTHHHHTSCEEEEEEEEETEEESS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhhccceeccCCCCCCCCeeEEEEEECHHHhHHHHhccCCcEEEEEEEECCcccC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCCc
Q psy1760 87 GDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPY 166 (793)
Q Consensus 87 ~d~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~~ 166 (793)
+|++|+|+++++. ++|++++++++++|+|+++|+||+|||+|+||+|||||||+|++|++++|+++||++++++|+.+.
T Consensus 102 ~D~eG~v~~~~~~-~~t~e~i~~~l~~f~G~i~Q~PP~~SAvKv~GkraYelAR~G~~ve~~~R~v~I~~i~ll~~~~~~ 180 (327)
T 1k8w_A 102 SDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE 180 (327)
T ss_dssp SBTTSCEEEECCC-CCCHHHHHHHHHTTSEEEEECCCSSSCCEETTEEHHHHHHTTCCCCCCCEEEEEEEEEEEEEETTE
T ss_pred CCCCCCEEeecCC-CCCHHHHHHHHHhccceEEEeCChhheeccCCccHHHHHhCCCcccccceEEEEEEEEEEEeeCCE
Confidence 9999999999887 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760 167 LTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA 214 (793)
Q Consensus 167 ~~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa 214 (793)
+.|++.||+|||||+|++|||..|+|++++..|||+++|+|.++..+.
T Consensus 181 ~~~~v~CskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~F~~~~a~~ 228 (327)
T 1k8w_A 181 LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVT 228 (327)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHTSCEEEEEEEEEEETTCCGGGCEE
T ss_pred EEEEEEEcCCchHHHHHHHHHHHhCCCeEEEEEEEEEEcCCccccccC
Confidence 999999999999999999999999999999999999999998877653
No 15
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=4.7e-57 Score=521.69 Aligned_cols=404 Identities=20% Similarity=0.289 Sum_probs=314.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccc------cccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN------ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA 284 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~------~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~ 284 (793)
++|+|+||+|+|||||+++|+...+.+...+.+. .+++|+.+.|+++|+|+......+.|+++.++|||||||.
T Consensus 14 ~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (529)
T 2h5e_A 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHE 93 (529)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCCh
Confidence 6999999999999999999998777665443322 4578889999999999999999999999999999999999
Q ss_pred cchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhh--------
Q psy1760 285 DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL-------- 356 (793)
Q Consensus 285 df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l-------- 356 (793)
+|..++.++++.+|++|+|+|+.++++.|+..+++.+...++|+++|+||+|+..++..++++++.+.+..-
T Consensus 94 df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~~~~~~pi 173 (529)
T 2h5e_A 94 DFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPI 173 (529)
T ss_dssp TCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESEEEE
T ss_pred hHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCccceecce
Confidence 999999999999999999999999999999999999999999999999999999887777777776654210
Q ss_pred ------------------------cc-----------c--------c---------------------------cccCcc
Q psy1760 357 ------------------------CA-----------T--------E---------------------------EQLDFP 366 (793)
Q Consensus 357 ------------------------~~-----------~--------~---------------------------~~l~~P 366 (793)
+. . + ....+|
T Consensus 174 ~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~P 253 (529)
T 2h5e_A 174 GCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEITP 253 (529)
T ss_dssp SCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHHTTSEEE
T ss_pred ecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHHhCceeE
Confidence 00 0 0 001269
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCC---------CCCCceEEEEEEee---eCCCceEEEEEEeec
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN---------SNNPLQLQIISLEY---SSYLGKIGIGRILSG 434 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~---------~~~p~~~~V~~~~~---~~~~G~v~~grV~sG 434 (793)
|+++||+++. |+++||++|.+++|+|... .++||.++|||+.. +++.|++++|||+||
T Consensus 254 v~~gSA~~~~----------Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~~RV~sG 323 (529)
T 2h5e_A 254 VFFGTALGNF----------GVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSG 323 (529)
T ss_dssp EEECBTTTTB----------SHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEEEEEEES
T ss_pred EEeeecccCC----------CHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEEEEEecC
Confidence 9999999998 9999999999999999642 15799999999976 467999999999999
Q ss_pred ccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCeEeCCCCCCCCCCCccCCCceE
Q psy1760 435 RIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLT 514 (793)
Q Consensus 435 ~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~~~~~~l~~~~~~~P~~~ 514 (793)
+|++||.|++.+. | ...||++|+.+.|.+++++++|.|||||+|.|++++.+|||||+.+ +..++++++++|+++
T Consensus 324 ~l~~g~~v~~~~~--~--~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~-~~~~~~~~~~~P~~~ 398 (529)
T 2h5e_A 324 KYEKGMKLRQVRT--A--KDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGE-MMKFTGIPNFAPELF 398 (529)
T ss_dssp CEETTCEEEETTT--T--EEEECSCEECCCC-----CCEECTTCEEEECCSSCCCTTCEEESSC-CCCBCCCEEECCSEE
T ss_pred eEcCCCEEEEeeC--C--CEEEeceeeEEeCCCceEcceECCCCEEEEeccCCCccCCEeecCC-ccccCCCCCCCccEE
Confidence 9999999999876 3 4689999999999999999999999999999999999999999977 567888889999999
Q ss_pred EEEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHhc-CceEEEecCE
Q psy1760 515 INFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPR 593 (793)
Q Consensus 515 ~~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrre-g~e~~vs~P~ 593 (793)
++|.+.+. .+ ..||.++|.|+++||| +++.+++++++ ++|+|||||||+|++++|+|| |+++.+++|+
T Consensus 399 ~~v~~~~~---~d------~~kl~~~L~~L~~ed~-~~~~~~~~t~~-~il~~~Gelhlev~~~rl~~ey~v~v~~~~~~ 467 (529)
T 2h5e_A 399 RRIRLKDP---LK------QKQLLKGLVQLSEEGA-VQVFRPISNND-LIVGAVGVLQFDVVVARLKSEYNVEAVYESVN 467 (529)
T ss_dssp EEEEESCC------------CTHHHHHHHHHHTTS-CEEEEETTSCC-EEEEESSTHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred EEEEECCh---HH------HHHHHHHHHHHHhhCC-EEEEEeCCCCc-EEEEEECHHHHHHHHHHHHHHhCcEEEEecCc
Confidence 99997653 22 2479999999999997 99999999999 999999999999999999975 9999999999
Q ss_pred EEEEEecCeeeCeEEEEEEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhcchH
Q psy1760 594 VIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQ 659 (793)
Q Consensus 594 V~yre~~g~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~ 659 (793)
|.|||+ |..++ ...++.+....+..+-.+. .| +..|..|.+=-+.|.
T Consensus 468 v~y~et------------i~~~~---~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~ 514 (529)
T 2h5e_A 468 VATARW------------VECAD---AKKFEEFKRKNESQLALDG--GD--NLAYIATSMVNLRLA 514 (529)
T ss_dssp CSEEEE------------EECSC---HHHHHHHHHHSGGGEEECT--TC--CEEEEESSHHHHHHH
T ss_pred eeEEEE------------EcCCc---hhhHHHHhhhccCeEEEeC--CC--CEEEEEeCHHHHHHH
Confidence 999994 65553 2335555555543333222 23 344555554444443
No 16
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=8.2e-57 Score=519.19 Aligned_cols=404 Identities=22% Similarity=0.290 Sum_probs=340.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccc------cccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN------ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA 284 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~------~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~ 284 (793)
+||+|+||+|+|||||+++|++.++.+...+.+. ..++|+...|+++|+|+......+.|+++.++|||||||.
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHA 93 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCch
Confidence 6999999999999999999998888775554432 3577889999999999999999999999999999999999
Q ss_pred cchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhccc-----
Q psy1760 285 DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT----- 359 (793)
Q Consensus 285 df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~----- 359 (793)
+|..++.++++.+|++|+|+|+++++..++..+|..+...++|+|+|+||+|+..+++.+.++++.+.+......
T Consensus 94 df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~~~~~~~pi 173 (528)
T 3tr5_A 94 DFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCAPVTWPI 173 (528)
T ss_dssp TCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESEEEE
T ss_pred hHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCCceeeeccc
Confidence 999999999999999999999999999999999999999999999999999999888877888877665320000
Q ss_pred ------------------------------------------------------------------------ccccCccE
Q psy1760 360 ------------------------------------------------------------------------EEQLDFPV 367 (793)
Q Consensus 360 ------------------------------------------------------------------------~~~l~~Pv 367 (793)
.....+||
T Consensus 174 g~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~PV 253 (528)
T 3tr5_A 174 GMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLKGELTPI 253 (528)
T ss_dssp SCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHTTSEEEE
T ss_pred ccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhcCceeEE
Confidence 00012499
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCC---------CCCCceEEEEEEee--eC-CCceEEEEEEeecc
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN---------SNNPLQLQIISLEY--SS-YLGKIGIGRILSGR 435 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~---------~~~p~~~~V~~~~~--~~-~~G~v~~grV~sG~ 435 (793)
+++||++|. |+++||++|.+++|+|... .++||.++|||+.. |+ +.|+++++||+||+
T Consensus 254 ~~gSA~~~~----------GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV~sG~ 323 (528)
T 3tr5_A 254 FFGSAINNF----------GVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRIASGQ 323 (528)
T ss_dssp EECBGGGTB----------SHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEEEESC
T ss_pred EeccccCCc----------cHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEEEecCe
Confidence 999999998 9999999999999999643 25899999999985 88 99999999999999
Q ss_pred cccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCeEeCCCCCCCCCCCccCCCceEE
Q psy1760 436 IKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTI 515 (793)
Q Consensus 436 lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~~~~~~l~~~~~~~P~~~~ 515 (793)
|++||.|++.+. | ...||.+++.+.|.++.++++|.|||||++.|++++.+|||||+. .+..++++++++|.+.+
T Consensus 324 l~~g~~v~~~~~--~--~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~~~GDtl~~~-~~~~~~~~~~~~P~~~~ 398 (528)
T 3tr5_A 324 YQKGMKAYHVRL--K--KEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQG-ERFKFTGIPNFASELFR 398 (528)
T ss_dssp EETTEEEEETTT--T--EEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSCCTTCEEESS-CCCCBCCCEEECCSEEE
T ss_pred EcCCCEEEecCC--C--ceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCCccCCEEcCC-CCcccCCCCCCCCCEEE
Confidence 999999999876 3 478999999999999999999999999999999999999999984 45567778888999999
Q ss_pred EEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHhc-CceEEEecCEE
Q psy1760 516 NFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRV 594 (793)
Q Consensus 516 ~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrre-g~e~~vs~P~V 594 (793)
++.+.+. + +..+|.++|.|+.+|||+ ++..++++++ ++|+|||||||+|+++||+|+ |+++.+++|+|
T Consensus 399 ~i~~~~~---~------d~~kl~~aL~~L~~ED~~-~~~~~~~~~~-~il~~~G~lhlev~~~rL~~ey~v~v~~~~~~v 467 (528)
T 3tr5_A 399 LVRLKDP---L------KQKALLKGLTQLSEEGAT-QLFRPLDSNE-LILGAVGLLQFDVVAYRLENEYNVKCVYESVNV 467 (528)
T ss_dssp EEEESCG---G------GHHHHHHHHHHHHHTTSC-EEEEETTCCC-EEEEESSTHHHHHHHHHHHHHHCCCEEEECCSC
T ss_pred EEEECCh---h------HHHHHHHHHHHHHhcCCe-EEEEcCCCCC-EEEEEEcHHHHHHHHHHHHHHhCcEEEEecCce
Confidence 9987543 2 246899999999999985 8888989999 999999999999999999965 99999999999
Q ss_pred EEEEecCeeeCeEEEEEEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhcchH
Q psy1760 595 IFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQ 659 (793)
Q Consensus 595 ~yre~~g~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~ 659 (793)
.|++ .|+.++. .-++.+.+..+..+-.+. +| +..|..|..=.+.|.
T Consensus 468 ~~~~------------~i~~~~~---~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~ 513 (528)
T 3tr5_A 468 VTAR------------WVICDDK---AVLERFNQEQSRNLAYDG--GG--HLTYLAPSRVNLEIT 513 (528)
T ss_dssp CEEE------------EEECSCH---HHHHHHHHHSGGGEEEET--TC--CEEEEESSHHHHHHH
T ss_pred EEEE------------EecCCCH---hHHHHHhhhhcceEEEcC--CC--CEEEEEcCHHHHHHH
Confidence 9998 4666543 355666665555444443 33 334555555444443
No 17
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=100.00 E-value=6.7e-48 Score=416.86 Aligned_cols=171 Identities=36% Similarity=0.514 Sum_probs=154.6
Q ss_pred cceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccCC
Q psy1760 9 VSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 88 (793)
Q Consensus 9 ~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~d 88 (793)
.+|||+||||+||||||||+|+||+|+.+|+||+|||||+||||||||+|+|||+++|+++.+|+|+|+++||.
T Consensus 65 ~~Gil~vdKP~G~TS~~vv~~vr~~l~~~KvGH~GTLDP~AtGvL~v~~G~aTk~~~~l~~~~K~Y~~~~~lG~------ 138 (357)
T 2apo_A 65 KYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERATKTIPMWHIPPKEYVCLMHLHR------ 138 (357)
T ss_dssp HTEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGTTSSCEEEEEEEEESS------
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCccccccccccCCCceeEEEEEeCHHHhHHHHhccCCcEEEEEEEECC------
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999993
Q ss_pred CcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCCcee
Q psy1760 89 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLT 168 (793)
Q Consensus 89 ~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~~~~ 168 (793)
++|++++++++++|+|++.|+||+|||+| +++|+++||++++++|+.+.+.
T Consensus 139 ------------~~~~~~i~~~l~~f~G~i~Q~PP~~SAvK-----------------~~~R~v~I~~~~l~~~~~~~~~ 189 (357)
T 2apo_A 139 ------------DASEEDILRVFKEFTGRIYQRPPLKAAVK-----------------RRLRIRKIHELELLDKDGKDVL 189 (357)
T ss_dssp ------------CCCHHHHHHHHHHHSEEEECC----------------------------CEEEEEEEEEEEEETTEEE
T ss_pred ------------CCCHHHHHHHHHhCcccEEEeCCchhhcc-----------------ccccceeEEEEEEEEeeCCEEE
Confidence 36899999999999999999999999976 5789999999999999999999
Q ss_pred eEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760 169 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA 214 (793)
Q Consensus 169 ~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa 214 (793)
|++.||+|||||+|++|||..|+|++++..|||+++|+|.++.++.
T Consensus 190 ~~v~cs~GTYIRsL~~DiG~~LG~~a~~~~LrRt~~G~f~~~~a~t 235 (357)
T 2apo_A 190 FRVKCQSGTYIRKLCEDIGEALGTSAHMQELRRTKSGCFEEKDAVY 235 (357)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTSCEEEEEEEEEEETTEEGGGCBC
T ss_pred EEEEECCCchHHHHHHHHHHhhCCCEEEEEEEEEEEccCcHHHccC
Confidence 9999999999999999999999999999999999999999887654
No 18
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=100.00 E-value=5.6e-48 Score=419.26 Aligned_cols=175 Identities=34% Similarity=0.505 Sum_probs=158.8
Q ss_pred CCCCCc-----ceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEE
Q psy1760 4 PSISPV-----SVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAII 78 (793)
Q Consensus 4 ~~~~~~-----~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~ 78 (793)
|.-|++ +|||+||||.||||||||+|+||+|+.+|+||+|||||+||||||||+|+|||+++|+++.+|+|+|++
T Consensus 48 p~~r~~~~~~~~Gil~ldKP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~v~iG~aTKl~~~l~~~~K~Y~a~~ 127 (400)
T 3u28_A 48 PLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIV 127 (400)
T ss_dssp GGGCCHHHHHHTEEEEEEECSSSCHHHHHHHHHHHHTCSCEEESSCCCTTCEEEEEEEEGGGGGGHHHHHHSCEEEEEEE
T ss_pred cCcCCHHHhccCcEEEEECCCCCCHHHHHHHHHHHhCcCcccccCCCCCCCeEEEEEEEChHHhHhHHhcCCCcEEEEEE
Confidence 334666 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEceeeccCCCcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEE
Q psy1760 79 HLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKIT 158 (793)
Q Consensus 79 ~~g~~t~t~d~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~ 158 (793)
+||..|+ |++++++++++|+|++.|+||+|||+|+ ++|.++||+++
T Consensus 128 ~lG~~~~-----------------~~~~i~~~l~~f~G~i~Q~PP~ySAvK~-----------------~~R~v~I~~i~ 173 (400)
T 3u28_A 128 RLHDALK-----------------DEKDLGRSLENLTGALFQRPPLISAVKR-----------------QLRVRTIYESN 173 (400)
T ss_dssp EESSCCS-----------------STTHHHHHHHHTCEEEEECCC-----CC-----------------CCEEEEEEEEE
T ss_pred EeCCCCC-----------------CHHHHHHHHHhCcCceEEECCceecccC-----------------CceeEEEEEEE
Confidence 9997542 5689999999999999999999999864 47899999999
Q ss_pred EEeecC--CceeeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhcccccccccc
Q psy1760 159 IIDYTI--PYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKN 212 (793)
Q Consensus 159 ~~d~~~--~~~~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~n 212 (793)
+++|+. +.+.|++.||+|||||+|++|||..|+|++|+..|||+++|+|+++.+
T Consensus 174 ll~~~~~~~~~~~~V~CskGTYIRsL~~DiG~~LG~gahm~~LrRt~~G~F~~~~a 229 (400)
T 3u28_A 174 LIEFDNKRNLGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDN 229 (400)
T ss_dssp EEEEETTTTEEEEEEEECTTCCHHHHHHHHHHHHSSCEEEEEEEEEEETTEETTSS
T ss_pred EEEEcCCCceEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEcCcchhhh
Confidence 999986 568999999999999999999999999999999999999999988764
No 19
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=100.00 E-value=2.1e-47 Score=412.73 Aligned_cols=168 Identities=38% Similarity=0.533 Sum_probs=151.9
Q ss_pred cceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccCC
Q psy1760 9 VSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 88 (793)
Q Consensus 9 ~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~d 88 (793)
.||||+||||.||||||||+++||+|+.+|+||+|||||+||||||||+|+|||+++|+++.+|+|+|+++||.
T Consensus 45 ~~Gil~vdKP~g~tS~~vv~~vr~~~~~~KvGH~GTLDP~atGvL~v~~g~aTk~~~~l~~~~K~Y~~~~~lg~------ 118 (334)
T 2aus_C 45 QYGVINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLPVALERATRVVQALLPAGKEYVALMHLHG------ 118 (334)
T ss_dssp HTEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGGTTCCEEEEEEEEESS------
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCcceeccccccCCccceeEEEEeChhhhhHHHhcccCcEEEEEEEECC------
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999993
Q ss_pred CcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCCcee
Q psy1760 89 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLT 168 (793)
Q Consensus 89 ~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~~~~ 168 (793)
++|++++++++++|+|+++|+||+|||+| +++|+++||++++++|+.+.+.
T Consensus 119 ------------~~~~~~i~~~l~~f~G~i~Q~pP~~SA~k-----------------~~~R~v~I~~~~~~~~~~~~~~ 169 (334)
T 2aus_C 119 ------------DVPEDKIRAVMKEFEGEIIQRPPLRSAVK-----------------RRLRTRKVYYIEILEIDGRDVL 169 (334)
T ss_dssp ------------CCCHHHHHHHHHHTSEEEECC-----------------------------EEEEEEEEEEEEETTEEE
T ss_pred ------------CCCHHHHHHHHHhCcCeEEEeCCccccCc-----------------CCcCCEEEEEEEEEEeeCCeEE
Confidence 46899999999999999999999999976 5789999999999999999999
Q ss_pred eEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccc
Q psy1760 169 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDK 211 (793)
Q Consensus 169 ~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~ 211 (793)
|++.||+|||||+|++|||..|+|++|+..|||+++|+|.++.
T Consensus 170 ~~v~cs~GTYIRsL~~Dig~~Lg~~a~~~~LrRt~~g~f~~~~ 212 (334)
T 2aus_C 170 FRVGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPFKEDE 212 (334)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHSSCEEEEEEEEEEETTEESST
T ss_pred EEEEECCCcHHHHHHHHHHHHhCCCEEEeEEEEEEEccCchhh
Confidence 9999999999999999999999999999999999999998876
No 20
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=5.6e-38 Score=355.74 Aligned_cols=278 Identities=26% Similarity=0.351 Sum_probs=236.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccc---------------cccccccchhhccccceEEeeeeeEEeecCeEE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQN---------------INARIMDSNEIEKERGITIFSKNCSIEYNGTRI 275 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~---------------v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i 275 (793)
.||+++||+|+|||||+++|++.++.+..... ..++++|....|+++|+|++.....+.++++.+
T Consensus 18 ~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~ 97 (439)
T 3j2k_7 18 VNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHF 97 (439)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeEE
Confidence 59999999999999999999998877654331 124688999999999999999999999999999
Q ss_pred EEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCC-------chhHHHHHHHHHcCCc-cEEEEecccCCCC-----Ch
Q psy1760 276 NIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPM-------PQTRFVTRKALKLGFK-PIVVVNKIDRSNA-----RP 342 (793)
Q Consensus 276 ~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~-------~qt~~~l~~~~~~~ip-~IvvINKiD~~~a-----~~ 342 (793)
+|||||||.+|...+.++++.+|++||||||.+|++ +||++++..+...++| +|+|+||+|+... ++
T Consensus 98 ~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~ 177 (439)
T 3j2k_7 98 TILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERY 177 (439)
T ss_pred EEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHH
Confidence 999999999999999999999999999999999986 7999999999999999 7899999999643 24
Q ss_pred hhhHhHHHHHHhhhcccccccCccEEEeecCCCCccccccc--ccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeee
Q psy1760 343 EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYS 420 (793)
Q Consensus 343 ~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~ 420 (793)
+++.+++.+++..++.... .++|++++||++|.++.++.+ +|.....|++.| +.+|+|....+.||+++|.+++.
T Consensus 178 ~~i~~~~~~~l~~~g~~~~-~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l-~~i~~~~~~~~~p~r~~v~~~~~- 254 (439)
T 3j2k_7 178 EECKEKLVPFLKKVGFNPK-KDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYL-DNLPNFNRSVDGPIRLPIVDKYK- 254 (439)
T ss_pred HHHHHHHHHHHHHhccccc-CCeeEEEeeccCCcccccccccccccCchHHHHHH-HhCCCCccCCCCCeEEEEEEEEc-
Confidence 5566677777766665432 157899999999998776543 456666788866 66888888889999999999875
Q ss_pred CCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEE--Eeccc--eeecCCeEeC
Q psy1760 421 SYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL--ITGIE--EICIGSTICD 496 (793)
Q Consensus 421 ~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~--i~gl~--~i~iGdtl~~ 496 (793)
+.|+++.|||.+|+|++||.|.+.|. + ...+|++|+.++ .++++|.|||+|+ ++|++ ++..||+||+
T Consensus 255 -~~G~v~~G~v~~G~l~~Gd~v~~~p~--~--~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~ 325 (439)
T 3j2k_7 255 -DMGTVVLGKLESGSIFKGQQLVMMPN--K--HNVEVLGILSDD----TETDFVAPGENLKIRLKGIEEEEILPGFILCD 325 (439)
T ss_pred -CCCeEEEEEEEeeEEecCCEEEEccC--C--ceEEEEEEEECC----eEcCEecCCCcceEEEeccchhhcCCcEEecC
Confidence 57999999999999999999999987 3 468999998654 7999999999999 56775 6788999999
Q ss_pred CCCC
Q psy1760 497 PSKP 500 (793)
Q Consensus 497 ~~~~ 500 (793)
++++
T Consensus 326 ~~~~ 329 (439)
T 3j2k_7 326 PSNL 329 (439)
T ss_pred CCCC
Confidence 8765
No 21
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=5.3e-38 Score=351.80 Aligned_cols=279 Identities=25% Similarity=0.343 Sum_probs=229.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++||+|+|||||+++|++.............+.+|....|+++|+|++.....+.++++.++|||||||.+|..++
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~ 83 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNM 83 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHHH
Confidence 48999999999999999999875221111111112346888889999999999888888888999999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCcc-EEEEecccCCCC--ChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNA--RPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~-IvvINKiD~~~a--~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
.++++.+|++|+|+|+.+|.++||+++|..+...++|. |+|+||+|+.+. .++.+.+++++++..++... ..+|+
T Consensus 84 ~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ 161 (397)
T 1d2e_A 84 ITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG--EETPI 161 (397)
T ss_dssp HHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT--TTSCE
T ss_pred HhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc--ccCcE
Confidence 99999999999999999999999999999999999995 789999999752 12344566777776665432 14789
Q ss_pred EEeecCCCCcccccccccCC-chhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEec
Q psy1760 368 IYTSALHGYANENSKARQGN-MIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMN 446 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~g-i~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~ 446 (793)
+++||++|.+..+.. +..+ +.+|+++|.+++|+|..+.++||+++|++++.+++.|++++|||++|+|++||.|.+.+
T Consensus 162 i~~SA~~g~n~~~~~-~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~ 240 (397)
T 1d2e_A 162 IVGSALCALEQRDPE-LGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLG 240 (397)
T ss_dssp EECCHHHHHTTCCTT-TTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEEE
T ss_pred EEeehhhcccccCCC-ccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEEeC
Confidence 999999987532211 1124 88999999999999988889999999999999999999999999999999999999987
Q ss_pred CCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--cc--ceeecCCeEeCCC
Q psy1760 447 GPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GI--EEICIGSTICDPS 498 (793)
Q Consensus 447 ~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--gl--~~i~iGdtl~~~~ 498 (793)
. +.....+|++|+.+. .++++|.|||+|++. |+ +++.+||+||+++
T Consensus 241 ~--~~~~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~ 290 (397)
T 1d2e_A 241 H--SKNIRTVVTGIEMFH----KSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPG 290 (397)
T ss_dssp T--TEEEEEEEEEEEETT----EEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred C--CCCeEEEEEEEEECC----cccCEecCCCceEEEecccchhccCceeEEeCCC
Confidence 6 212468999998764 789999999999885 65 6899999999865
No 22
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=2e-37 Score=348.07 Aligned_cols=281 Identities=27% Similarity=0.385 Sum_probs=228.7
Q ss_pred cceeeeecccCCcceehhhhhhccCcccc-ccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRK-NQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 289 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~-~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 289 (793)
.+|+++||+|+|||||+++|++....... ........+|....|+++|+|++.....+.++++.++|||||||.+|..+
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 91 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKN 91 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHHH
Confidence 58999999999999999999874211100 00011235788889999999999988888888999999999999999999
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCc-cEEEEecccCCCC--ChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNA--RPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip-~IvvINKiD~~~a--~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
+.++++.+|++|+|+|+.++.++|+++++..+...++| +|+|+||+|+.+. ..+.+.+++.+++..++... .++|
T Consensus 92 ~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~ 169 (405)
T 2c78_A 92 MITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG--DEVP 169 (405)
T ss_dssp HHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT--TTSC
T ss_pred HHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccc--cCCC
Confidence 99999999999999999999999999999999999999 6899999999752 12334456666666655421 1478
Q ss_pred EEEeecCCCCcccccc--------cccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeeccccc
Q psy1760 367 VIYTSALHGYANENSK--------ARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKS 438 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~--------~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~ 438 (793)
++++||++|.+..+.+ .+..++.+|+++|.+++|+|..+.++||+++|++++++++.|++++|||++|+|++
T Consensus 170 ~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~ 249 (405)
T 2c78_A 170 VIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKV 249 (405)
T ss_dssp EEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEETTTEEEEEEECCBSEEET
T ss_pred EEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcCCCceEEEEEEecccccC
Confidence 9999999997522110 01113789999999999999888899999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--cc--ceeecCCeEeCCC
Q psy1760 439 LQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GI--EEICIGSTICDPS 498 (793)
Q Consensus 439 G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--gl--~~i~iGdtl~~~~ 498 (793)
||.|.+.+. ++.....+|++|+.+. .++++|.|||+|++. |+ +++.+||+||+++
T Consensus 250 gd~v~~~~~-~~~~~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~ 308 (405)
T 2c78_A 250 GDEVEIVGL-APETRKTVVTGVEMHR----KTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPG 308 (405)
T ss_dssp TCEEEEESS-SSSCEEEEEEEEEETT----EEESEEETTCEEEEEESSCCTTTCCTTCEEESTT
T ss_pred CCEEEEeCC-CCCeeeEEEEEEEECC----cccCEEcCCCEEEEEECCCcHhhcCceEEEEcCC
Confidence 999999987 2112468999998764 789999999999885 65 6899999999875
No 23
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=6e-37 Score=347.18 Aligned_cols=279 Identities=27% Similarity=0.338 Sum_probs=222.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccc---------------cccccccchhhccccceEEeeeeeEEeecCeEE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQN---------------INARIMDSNEIEKERGITIFSKNCSIEYNGTRI 275 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~---------------v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i 275 (793)
.+|+++||+|+|||||+++|++.++.+..... ..++++|..+.|+++|+|++.....+.++++.+
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~ 86 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFF 86 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEE
Confidence 58999999999999999999987665543210 012568999999999999999999999999999
Q ss_pred EEecCCCcccchHHHHHHhhccCcEEEEEeCCCC-------CCchhHHHHHHHHHcCCc-cEEEEecccCCCCC-----h
Q psy1760 276 NIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-------PMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR-----P 342 (793)
Q Consensus 276 ~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g-------~~~qt~~~l~~~~~~~ip-~IvvINKiD~~~a~-----~ 342 (793)
+|||||||.+|..++.++++.+|++|+|+|+.++ +++||++++..+...++| +|+|+||+|+.+++ +
T Consensus 87 ~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~ 166 (435)
T 1jny_A 87 TIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRY 166 (435)
T ss_dssp EECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHH
T ss_pred EEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHH
Confidence 9999999999999999999999999999999999 889999999999999985 68999999998732 3
Q ss_pred hhhHhHHHHHHhhhcccccccCccEEEeecCCCCccccccc--ccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeee
Q psy1760 343 EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYS 420 (793)
Q Consensus 343 ~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~ 420 (793)
+.+.+++++++..++... ..+|++++||++|.++.+... +|..-..|+++| +.+++|....+.||+++|.++++.
T Consensus 167 ~~~~~~i~~~~~~~~~~~--~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l-~~~~~p~~~~~~~~~~~v~~v~~~ 243 (435)
T 1jny_A 167 KEIVDQVSKFMRSYGFNT--NKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYL-DQLELPPKPVDKPLRIPIQDVYSI 243 (435)
T ss_dssp HHHHHHHHHHHHHTTCCC--TTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHH-TTCCCCCCGGGSCCBEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCc--CCceEEEeecccCccccccccccccccchhHHHHH-hccCCCCCCCCCCeEEEEEEEEEe
Confidence 455677777776665432 147899999999997765432 222235799997 556777766688999999999999
Q ss_pred CCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--c--cceeecCCeEeC
Q psy1760 421 SYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--G--IEEICIGSTICD 496 (793)
Q Consensus 421 ~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--g--l~~i~iGdtl~~ 496 (793)
++.|++++|||++|+|++||.|.+.+. ....+|++|+.+. .++++|.|||+|++. | .+++.+||+||+
T Consensus 244 ~~~G~v~~g~v~~G~l~~gd~v~~~p~----~~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~ 315 (435)
T 1jny_A 244 SGVGTVPVGRVESGVLKVGDKIVFMPA----GKVGEVRSIETHH----TKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGH 315 (435)
T ss_dssp TTTEEEEEEECCBSCEETTCEEEEETT----TEEEEEEEEEETT----EEESEECTTCEEEEEEESSCGGGCCTTCEEEC
T ss_pred CCCcEEEEEEEecCeEEcCCEEEECCc----eeEEEEEEEEECC----cEEeEEcCCCEEEEEEecCCHHHcCCccEecC
Confidence 999999999999999999999999987 3578999998753 799999999999984 4 568999999998
Q ss_pred CCCC
Q psy1760 497 PSKP 500 (793)
Q Consensus 497 ~~~~ 500 (793)
++++
T Consensus 316 ~~~~ 319 (435)
T 1jny_A 316 PNNP 319 (435)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 7654
No 24
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=4e-36 Score=344.80 Aligned_cols=283 Identities=22% Similarity=0.263 Sum_probs=220.2
Q ss_pred cceeeeecccCCcceehhhhhhccCcccccc---------------ccccccccchhhccccceEEeeeeeEEeecCeEE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERGITIFSKNCSIEYNGTRI 275 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~---------------~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i 275 (793)
.+|+++|++|+|||||+++|++.++.+.... ....+++|....|+++|+|++.....+.++++.+
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~ 113 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANF 113 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCceE
Confidence 4899999999999999999998876654321 1124678999999999999999999999999999
Q ss_pred EEecCCCcccchHHHHHHhhccCcEEEEEeCCCC-------CCchhHHHHHHHHHcCCc-cEEEEecccCCCCC---hhh
Q psy1760 276 NIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-------PMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR---PEW 344 (793)
Q Consensus 276 ~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g-------~~~qt~~~l~~~~~~~ip-~IvvINKiD~~~a~---~~~ 344 (793)
+|||||||.+|...+.++++.+|++|||+|+.+| ..+|+++++..+...+++ +|+|+||+|+.+++ +++
T Consensus 114 ~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~ 193 (483)
T 3p26_A 114 TIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEE 193 (483)
T ss_dssp EEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHH
T ss_pred EEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHH
Confidence 9999999999999999999999999999999998 678999999999999976 78899999998743 445
Q ss_pred hHhHHHHHHhhhcccccccCccEEEeecCCCCccccccc-----ccC---CchhhHHHHHhhcCc--CcCCCCCCceEEE
Q psy1760 345 VVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA-----RQG---NMIPLFEAILKYVPV--HKDNSNNPLQLQI 414 (793)
Q Consensus 345 v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~-----~~~---gi~~Ll~~I~~~lp~--p~~~~~~p~~~~V 414 (793)
+.+++.+++..++.... .+|++++||++|.++.++.. .|. .+.++|+.+...+|+ |....+.||++.|
T Consensus 194 i~~~~~~~l~~~g~~~~--~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r~~v 271 (483)
T 3p26_A 194 IKSKLLPYLVDIGFFED--NINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSV 271 (483)
T ss_dssp HHHHHHHHHHHHTCCGG--GEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCEEEE
T ss_pred HHHHHHHHHHHcCCCcc--cceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceEEEE
Confidence 56666666666665432 46899999999998876532 233 344566666666665 6667889999999
Q ss_pred EEEeeeC---CCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEee----cCceEEecccCCCcEEEEe----
Q psy1760 415 ISLEYSS---YLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFK----GLDRVLVNEALSGDIVLIT---- 483 (793)
Q Consensus 415 ~~~~~~~---~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~----G~~~~~v~~a~aGdIv~i~---- 483 (793)
.+++..+ +.|+++.|||.+|+|++||.|.+.+. + ...+|++|+.+. |.++.++++|.|||+|+|.
T Consensus 272 ~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~--~--~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~ 347 (483)
T 3p26_A 272 LEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPS--E--QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKA 347 (483)
T ss_dssp EEEEC---CCSCCEEEEEEEEESEECTTCEEEEETT--T--EEEEEEEEEETTTC-----CCEESCEETTCEEEEEEESC
T ss_pred EEEEccCCcCCCceEEEEEEecceEccCCEEEEeCC--C--CeEEEEEEEEcCccccccccccccEECCCCEEEEEEEec
Confidence 9999887 48999999999999999999999987 3 468999999874 6678999999999999983
Q ss_pred ccceeecCCeEeCCCC
Q psy1760 484 GIEEICIGSTICDPSK 499 (793)
Q Consensus 484 gl~~i~iGdtl~~~~~ 499 (793)
+.+++.+||+||++++
T Consensus 348 ~~~di~rG~vl~~~~~ 363 (483)
T 3p26_A 348 YPEDIQNGDLAASVDY 363 (483)
T ss_dssp CGGGCCTTCEEECTTC
T ss_pred ccccCCceEEEEcCCC
Confidence 4478999999999876
No 25
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=1.4e-36 Score=346.79 Aligned_cols=279 Identities=25% Similarity=0.305 Sum_probs=201.8
Q ss_pred cceeeeecccCCcceehhhhhhccCcccccc---------------ccccccccchhhccccceEEeeeeeEEeecCeEE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERGITIFSKNCSIEYNGTRI 275 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~---------------~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i 275 (793)
.+|+++||+|+|||||+++|++.++.+...+ ....+++|....|+++|+|++.....+.++++.+
T Consensus 44 ~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~ 123 (467)
T 1r5b_A 44 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRF 123 (467)
T ss_dssp EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeEE
Confidence 5899999999999999999998776653211 1124678999999999999999999999999999
Q ss_pred EEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCC-------chhHHHHHHHHHcCCc-cEEEEecccCCCCC-----h
Q psy1760 276 NIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPM-------PQTRFVTRKALKLGFK-PIVVVNKIDRSNAR-----P 342 (793)
Q Consensus 276 ~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~-------~qt~~~l~~~~~~~ip-~IvvINKiD~~~a~-----~ 342 (793)
+|||||||.+|..++.++++.+|++|||||+.+|++ +||++++..+...++| +|||+||+|+...+ +
T Consensus 124 ~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~ 203 (467)
T 1r5b_A 124 SLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERY 203 (467)
T ss_dssp EECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHH
T ss_pred EEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHH
Confidence 999999999999999999999999999999999863 7999999999999998 78999999996533 3
Q ss_pred hhhHhHHHHHHhhh-cccccccCccEEEeecCCCCcccccc----cccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEE
Q psy1760 343 EWVVDATFDLFDKL-CATEEQLDFPVIYTSALHGYANENSK----ARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISL 417 (793)
Q Consensus 343 ~~v~~~i~~~~~~l-~~~~~~l~~Pvi~~SA~~g~~~~~~~----~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~ 417 (793)
+.+.+++.+++..+ +... ..++|++++||++|.++.++. .+|.....|++.| +.+|.|..+.++||+++|.++
T Consensus 204 ~~i~~e~~~~l~~~~g~~~-~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l-~~i~~~~~~~~~p~~~~v~~~ 281 (467)
T 1r5b_A 204 KECVDKLSMFLRRVAGYNS-KTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYL-DSMTHLERKVNAPFIMPIASK 281 (467)
T ss_dssp HHHHHHHHHHHHHHHCCCH-HHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHH-HHCCCCHHHHTSCCEEECCEE
T ss_pred HHHHHHHHHHHHHhcCCCc-cCCceEEecccccccccccccccccCccccchhHHHHH-HhCCCCcCCCCCCcEEEEEEE
Confidence 45566677776665 4321 114689999999999876643 2455556788776 678888777789999999999
Q ss_pred eeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEE--ec-cceeecCCeE
Q psy1760 418 EYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TG-IEEICIGSTI 494 (793)
Q Consensus 418 ~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i--~g-l~~i~iGdtl 494 (793)
+.+ .|++++|||.+|+|++||.|.+.+. + ...+|++|+.+ .+.++++|.|||+|++ +| .+++.+||+|
T Consensus 282 ~~~--~G~v~~G~v~~G~l~~gd~v~~~p~--~--~~~~V~~i~~~---~~~~~~~a~aG~~v~i~l~g~~~~i~rG~vl 352 (467)
T 1r5b_A 282 YKD--LGTILEGKIEAGSIKKNSNVLVMPI--N--QTLEVTAIYDE---ADEEISSSICGDQVRLRVRGDDSDVQTGYVL 352 (467)
T ss_dssp EES--SSEEEEEECCBSEEETTEEEEEETT--T--EEEEEEEEECT---TCCEESEEETTCEEEEEEESCCTTCCTTCEE
T ss_pred EeC--CCeEEEEEEeeeEEeeCCEEEEccC--C--eeEEEEEEecc---CCcEeeEEcCCCEEEEEEeccHhhCCceEEE
Confidence 764 7999999999999999999999987 3 46899999864 2478999999999998 56 6689999999
Q ss_pred eCCCCC
Q psy1760 495 CDPSKP 500 (793)
Q Consensus 495 ~~~~~~ 500 (793)
|+++++
T Consensus 353 ~~~~~~ 358 (467)
T 1r5b_A 353 TSTKNP 358 (467)
T ss_dssp ECSSSC
T ss_pred eCCCCC
Confidence 987653
No 26
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=7.8e-36 Score=339.92 Aligned_cols=278 Identities=26% Similarity=0.347 Sum_probs=232.0
Q ss_pred cceeeeecccCCcceehhhhhhccCcccccc--------------c-cccccccchhhccccceEEeeeeeEEeecCeEE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQ--------------N-INARIMDSNEIEKERGITIFSKNCSIEYNGTRI 275 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~--------------~-v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i 275 (793)
.+|+++||+|+|||||+++|++.++.+.... . -..+++|....|+++|+|++.....+.++++.+
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~ 87 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV 87 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceE
Confidence 5899999999999999999998765443211 0 113567888999999999999999999999999
Q ss_pred EEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCc-------hhHHHHHHHHHcCCc-cEEEEecccCCCCC---hhh
Q psy1760 276 NIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP-------QTRFVTRKALKLGFK-PIVVVNKIDRSNAR---PEW 344 (793)
Q Consensus 276 ~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~-------qt~~~l~~~~~~~ip-~IvvINKiD~~~a~---~~~ 344 (793)
+|||||||.+|..++.++++.+|++|||+||.++.++ ||++++..+...++| +|+|+||+|+.+++ ++.
T Consensus 88 ~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~ 167 (458)
T 1f60_A 88 TVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQE 167 (458)
T ss_dssp EEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHH
T ss_pred EEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHH
Confidence 9999999999999999999999999999999988765 999999999999997 78899999998532 345
Q ss_pred hHhHHHHHHhhhcccccccCccEEEeecCCCCccccccc--ccCC------------chhhHHHHHhhcCcCcCCCCCCc
Q psy1760 345 VVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGN------------MIPLFEAILKYVPVHKDNSNNPL 410 (793)
Q Consensus 345 v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~--~~~g------------i~~Ll~~I~~~lp~p~~~~~~p~ 410 (793)
+.+++.+++..++...+ ++|++++||++|.++.+... +|.. ...|+++| +.+++|....+.||
T Consensus 168 i~~~~~~~l~~~g~~~~--~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l-~~~~~p~~~~~~p~ 244 (458)
T 1f60_A 168 IVKETSNFIKKVGYNPK--TVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAI-DAIEQPSRPTDKPL 244 (458)
T ss_dssp HHHHHHHHHHHHTCCGG--GCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHH-HTSCCCCCCTTSCC
T ss_pred HHHHHHHHHHHcCCCcc--CceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHh-hccCCCcccCCCCc
Confidence 66677777766654321 47899999999998766532 2221 35799986 56788888889999
Q ss_pred eEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--cc--c
Q psy1760 411 QLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GI--E 486 (793)
Q Consensus 411 ~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--gl--~ 486 (793)
+++|.+++..++.|++++|||.+|++++||.|.+.|. ....+|++|+.+. .++++|.|||+|+|. |+ +
T Consensus 245 r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~----~~~~~V~~i~~~~----~~~~~a~aG~~v~i~l~gi~~~ 316 (458)
T 1f60_A 245 RLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPA----GVTTEVKSVEMHH----EQLEQGVPGDNVGFNVKNVSVK 316 (458)
T ss_dssp EEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETT----TEEEEEEEEEETT----EECSCBCTTCEEEEEESSCCTT
T ss_pred EEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCC----CceEEEeEEEECC----eEEEEEcCCCEEEEEEcCCccc
Confidence 9999999999999999999999999999999999987 3578999998654 789999999999984 66 5
Q ss_pred eeecCCeEeCCCC
Q psy1760 487 EICIGSTICDPSK 499 (793)
Q Consensus 487 ~i~iGdtl~~~~~ 499 (793)
++..||+|+++++
T Consensus 317 ~i~rG~vl~~~~~ 329 (458)
T 1f60_A 317 EIRRGNVCGDAKN 329 (458)
T ss_dssp TSCTTCEEEETTS
T ss_pred ccCceeEEecCCC
Confidence 7899999999865
No 27
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-36 Score=354.16 Aligned_cols=278 Identities=22% Similarity=0.270 Sum_probs=195.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccc---------------cccccccchhhccccceEEeeeeeEEeecCeEE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQN---------------INARIMDSNEIEKERGITIFSKNCSIEYNGTRI 275 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~---------------v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i 275 (793)
.||+++||+|+|||||+++|++.++.+...+. ...+++|....|+++|+|++.....+.++++.+
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i 257 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIY 257 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEE
Confidence 58999999999999999999987666543311 115788999999999999999999999999999
Q ss_pred EEecCCCcccchHHHHHHhhccCcEEEEEeCCCCC-------CchhHHHHHHHHHcCCc-cEEEEecccCCCCC---hhh
Q psy1760 276 NIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-------MPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR---PEW 344 (793)
Q Consensus 276 ~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~-------~~qt~~~l~~~~~~~ip-~IvvINKiD~~~a~---~~~ 344 (793)
+|||||||.+|..++.++++.+|++|||||+.+|. ++||++++..+...++| +|+|+||+|+.+++ +..
T Consensus 258 ~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~ 337 (592)
T 3mca_A 258 EIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQE 337 (592)
T ss_dssp -CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHH
T ss_pred EEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHH
Confidence 99999999999999999999999999999999864 89999999999999998 78899999998644 344
Q ss_pred hHhHHHHHH-hhhcccccccCccEEEeecCCCCcccccc----cccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEee
Q psy1760 345 VVDATFDLF-DKLCATEEQLDFPVIYTSALHGYANENSK----ARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEY 419 (793)
Q Consensus 345 v~~~i~~~~-~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~----~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~ 419 (793)
+.+++.+++ ..++.... .+|++++||++|.++.+.. .+|.....|++.|...+| |....+.||+++|.+++.
T Consensus 338 i~~el~~~l~~~~g~~~~--~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p-p~~~~~~p~r~~v~~v~~ 414 (592)
T 3mca_A 338 IKNIVSDFLIKMVGFKTS--NVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PEKPYRKPLRLSIDDVYR 414 (592)
T ss_dssp HHHHHHHHHTTTSCCCGG--GEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-CSCTTTSCCEEEEEEEEE
T ss_pred HHHHHHHHHHHhhCCCcc--ceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc-ccccccccchheeeEEEe
Confidence 556666666 55554322 4689999999999876533 346666799999977766 556778999999999999
Q ss_pred eCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEec-ccCCCcEEEE--eccc--eeecCCeE
Q psy1760 420 SSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVN-EALSGDIVLI--TGIE--EICIGSTI 494 (793)
Q Consensus 420 ~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~-~a~aGdIv~i--~gl~--~i~iGdtl 494 (793)
. +.|++++|||.+|+|++||.|.++|. + ...+|++|+.+. .+++ +|.|||+|+| +|++ ++.+||+|
T Consensus 415 ~-~~g~v~~G~v~~G~l~~Gd~v~i~p~--~--~~~~V~~i~~~~----~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl 485 (592)
T 3mca_A 415 S-PRSVTVTGRVEAGNVQVNQVLYDVSS--Q--EDAYVKNVIRNS----DPSSTWAVAGDTVTLQLADIEVNQLRPGDIL 485 (592)
T ss_dssp E-TTEEEEEEEEEESEEETTCEEEETTT--T--EEEEEEEEECSS----SCSCCEEETTCEEEEEESSSCGGGCCTTCEE
T ss_pred c-CCeEEEEEEEeeeeEccCCEEEEccC--C--ceEEEEEEEEcC----ccCcceecCCCEEEEEEccccccccceEEEe
Confidence 9 99999999999999999999999987 3 468999999654 6899 9999999996 5754 68999999
Q ss_pred eCCCCC
Q psy1760 495 CDPSKP 500 (793)
Q Consensus 495 ~~~~~~ 500 (793)
|++++|
T Consensus 486 ~~~~~~ 491 (592)
T 3mca_A 486 SNYENP 491 (592)
T ss_dssp ECSSSC
T ss_pred ccCCCC
Confidence 997654
No 28
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=5.4e-35 Score=331.12 Aligned_cols=279 Identities=23% Similarity=0.274 Sum_probs=223.8
Q ss_pred cceeeeecccCCcceehhhhhhccCcccccc------------c-----cccccccchhhccccceEEeeeeeEEeecCe
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQ------------N-----INARIMDSNEIEKERGITIFSKNCSIEYNGT 273 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~------------~-----v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~ 273 (793)
.+|+++||+|+|||||+++|++..+.+.... . ...+.+|....|+++|+|++.....+.+++.
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~ 104 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKR 104 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSE
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCc
Confidence 5899999999999999999998765443211 0 0124578999999999999999999999999
Q ss_pred EEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCc-cEEEEecccCCCCC---hhhhHhHH
Q psy1760 274 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR---PEWVVDAT 349 (793)
Q Consensus 274 ~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip-~IvvINKiD~~~a~---~~~v~~~i 349 (793)
.++|||||||.+|..++.++++.+|++|||+|+.++.++||++++..+...++| +|+|+||+|+.+++ ++.+.+++
T Consensus 105 ~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~ 184 (434)
T 1zun_B 105 KFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADY 184 (434)
T ss_dssp EEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHH
T ss_pred eEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999986 68899999998643 23345566
Q ss_pred HHHHhhhcccccccCccEEEeecCCCCccccccc--ccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEE
Q psy1760 350 FDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIG 427 (793)
Q Consensus 350 ~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~ 427 (793)
.+++..++.. ...+|++++||++|.++.+... +|.....|++.| +.+|.|..+.+.||++.|..++...+.|+..
T Consensus 185 ~~~~~~~g~~--~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l-~~i~~~~~~~~~~~~~~v~~v~~~~~~~~g~ 261 (434)
T 1zun_B 185 LKFAEGIAFK--PTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEIL-ETVEIASDRNYTDLRFPVQYVNRPNLNFRGF 261 (434)
T ss_dssp HHHHHTTTCC--CSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHH-HHSCCTTCCCSSSCEEECCEEECSSSSCCEE
T ss_pred HHHHHHhCCC--ccCceEEEEeccCCCCcccccccCccccCchHHHHH-hcCCCcccCCCCCcEEEEEEEeccCCCceEE
Confidence 6666555421 1236899999999997765432 344445577654 6788888778899999999998888888999
Q ss_pred EEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEeccc--eeecCCeEeCCCCC
Q psy1760 428 IGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIE--EICIGSTICDPSKP 500 (793)
Q Consensus 428 ~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~--~i~iGdtl~~~~~~ 500 (793)
.|||.+|+|++||.|.+.+. + ...+|++|+.+. .++++|.|||+|++...+ ++.+||+|++++++
T Consensus 262 ~G~v~~G~l~~gd~v~~~p~--~--~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~~~~~i~~G~~l~~~~~~ 328 (434)
T 1zun_B 262 AGTLASGIVHKGDEIVVLPS--G--KSSRVKSIVTFE----GELEQAGPGQAVTLTMEDEIDISRGDLLVHADNV 328 (434)
T ss_dssp EEECCBSCEETTCEEEETTT--C--CEEEEEEEEETT----EEESEECTTCEEEEEESSCCCCCTTCEEEETTSC
T ss_pred EEEEecceEeCCCEEEEecC--C--eEEEEEEEEEcC----cceeEecCCCEEEEEeCCccccCCccEEECCCCC
Confidence 99999999999999999886 3 478999999876 589999999999997544 57899999987654
No 29
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=1.7e-35 Score=357.69 Aligned_cols=279 Identities=28% Similarity=0.374 Sum_probs=215.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++||+|+|||||+++|++.............+.+|....|+++|+|++.....+.++++.++|||||||.+|..++
T Consensus 297 lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~m 376 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNM 376 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHH
Confidence 58999999999999999999865211110001112356888899999999999888888889999999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCc-cEEEEecccCCCC--ChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNA--RPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip-~IvvINKiD~~~a--~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
.++++.+|++|||||+.+|+++||++++..+...++| +|+|+||+|+.+. ..+.+.+++.+++..++... .++|+
T Consensus 377 i~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~--~~vp~ 454 (1289)
T 3avx_A 377 ITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG--DDTPI 454 (1289)
T ss_dssp HHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT--TTCCE
T ss_pred HHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc--cceeE
Confidence 9999999999999999999999999999999999999 5889999999752 12334566777776665432 24799
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecC
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNG 447 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~ 447 (793)
+++||++|++.. . .+..|+.+|+++|.+++|.|..+.++||+++|.+++.+++.|++++|||.+|+|++||.|.+.+.
T Consensus 455 IpvSAktG~ng~-~-~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps 532 (1289)
T 3avx_A 455 VRGSALKALEGD-A-EWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGI 532 (1289)
T ss_dssp EECCSTTTTTCC-H-HHHHHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESS
T ss_pred EEEEeccCCCCC-c-cccccchhhHhHHhhhcCCCccccccceeeeccccccccCCcEEEEEEEeccEEecCCEEEEecC
Confidence 999999995321 0 11237899999999999998888889999999999999999999999999999999999999987
Q ss_pred CCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--cc--ceeecCCeEeCCCC
Q psy1760 448 PDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GI--EEICIGSTICDPSK 499 (793)
Q Consensus 448 ~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--gl--~~i~iGdtl~~~~~ 499 (793)
+.....+|++|+.+. .++++|.|||+|++. |+ +++.+||+|++++.
T Consensus 533 --~~~~~~kVksI~~~~----~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~~ 582 (1289)
T 3avx_A 533 --KETQKSTCTGVEMFR----KLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGT 582 (1289)
T ss_dssp --SSCEEEEEEEEECSS----CEESEEETTCEEEEEESSCCGGGCCTTCEEESTTS
T ss_pred --CCceeEEEEEEeecC----ceeeEEecCCcceeEeeecchhcCCcccEEecCCC
Confidence 212468999998764 689999999999875 66 68999999998764
No 30
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=3.4e-35 Score=325.37 Aligned_cols=237 Identities=19% Similarity=0.142 Sum_probs=203.2
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
||+++||+|+|||||+++|+ ++|+|++.....+.++++.++|||||||.+|..++.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~ 78 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLI 78 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------------------------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH------------------------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHH
Confidence 89999999999999999996 578999999999999999999999999999999999
Q ss_pred HHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCcc-EEEEe-cccCCCCC-hhhhHhHHHHHHhhhcccccccCccEE
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVN-KIDRSNAR-PEWVVDATFDLFDKLCATEEQLDFPVI 368 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~-IvvIN-KiD~~~a~-~~~v~~~i~~~~~~l~~~~~~l~~Pvi 368 (793)
++++.+|++|+|+| .+|+++||++++..+...++|. |+++| |+|+ +.+ .+++.+++++++...+. ..+|++
T Consensus 79 ~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~----~~~~ii 152 (370)
T 2elf_A 79 TALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVL----QDWECI 152 (370)
T ss_dssp HHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTT----TTCEEE
T ss_pred HHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCC----CceEEE
Confidence 99999999999999 9999999999999999999999 99999 9999 432 23345666666654432 247999
Q ss_pred E--eecCC---CCcccccccccCCchhhHHHHHhhcCcCcC---C-CCCCceEEEEEEeeeCCCceEEEEEEeecccccC
Q psy1760 369 Y--TSALH---GYANENSKARQGNMIPLFEAILKYVPVHKD---N-SNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSL 439 (793)
Q Consensus 369 ~--~SA~~---g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~---~-~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G 439 (793)
+ +||++ |. |+++|++.|.+.+|++.. . ...|++++|..++..++.|++++|||++|+|++|
T Consensus 153 ~~~~SA~~~~~g~----------gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~g 222 (370)
T 2elf_A 153 SLNTNKSAKNPFE----------GVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDK 222 (370)
T ss_dssp ECCCCTTSSSTTT----------THHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETT
T ss_pred ecccccccCcCCC----------CHHHHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeC
Confidence 9 99999 76 999999999998876521 1 3456788899999999999999999999999999
Q ss_pred CEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--c--cceeecCCeEeC
Q psy1760 440 QDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--G--IEEICIGSTICD 496 (793)
Q Consensus 440 ~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--g--l~~i~iGdtl~~ 496 (793)
|.|.+.+. ....+|++|+.+. .++++|.|||+|++. | .+++.+||+|++
T Consensus 223 d~v~~~p~----~~~~~V~~i~~~~----~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 223 DKTKIFPL----DRDIEIRSIQSHD----VDIDSAPAGTRVGMRLKNVQAKDIERGFIISD 275 (370)
T ss_dssp CEEEEETT----TEEEEEEEEEETT----EEESEEETTCEEEEEEESCCGGGCCTTCEEES
T ss_pred CEEEECCC----CcEEEEeEEEECC----CCccEEcCCCcceEEEeccCHHHcCCceEEEC
Confidence 99999987 3578999998664 899999999999986 4 468999999997
No 31
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-35 Score=345.06 Aligned_cols=283 Identities=22% Similarity=0.263 Sum_probs=234.2
Q ss_pred cceeeeecccCCcceehhhhhhccCcccccc---------------ccccccccchhhccccceEEeeeeeEEeecCeEE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERGITIFSKNCSIEYNGTRI 275 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~---------------~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i 275 (793)
.+|+++||+|+|||||+++|++..+.+...+ ....+++|....++++|+|++.....+.+.++.+
T Consensus 168 lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~~ 247 (611)
T 3izq_1 168 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANF 247 (611)
T ss_dssp CEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCceE
Confidence 4899999999999999999998866554321 1125678889999999999999999999999999
Q ss_pred EEecCCCcccchHHHHHHhhccCcEEEEEeCCCC-------CCchhHHHHHHHHHcCCc-cEEEEecccCCCCC---hhh
Q psy1760 276 NIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-------PMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR---PEW 344 (793)
Q Consensus 276 ~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g-------~~~qt~~~l~~~~~~~ip-~IvvINKiD~~~a~---~~~ 344 (793)
+|||||||.+|...+..+++.+|++|+|||+.+| ..+||++++..+...++| +|+|+||+|+.+++ +++
T Consensus 248 ~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~e 327 (611)
T 3izq_1 248 TIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEE 327 (611)
T ss_dssp EEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHH
T ss_pred EEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHH
Confidence 9999999999999999999999999999999987 578999999999999987 78899999998643 445
Q ss_pred hHhHHHHHHhhhcccccccCccEEEeecCCCCcccccc-----cccCCchhhHHHHHh---hcCc--CcCCCCCCceEEE
Q psy1760 345 VVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSK-----ARQGNMIPLFEAILK---YVPV--HKDNSNNPLQLQI 414 (793)
Q Consensus 345 v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~-----~~~~gi~~Ll~~I~~---~lp~--p~~~~~~p~~~~V 414 (793)
+.+++.+++..++.... .+|++++||++|.++.++. ..|.....|++.|.. .+|. |....+.||+++|
T Consensus 328 i~~~l~~~l~~~g~~~~--~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r~~V 405 (611)
T 3izq_1 328 IKSKLLPYLVDIGFFED--NINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSV 405 (611)
T ss_dssp HHHHHHHHHHHHTCCGG--GCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCEEEC
T ss_pred HHHHHHHHHHhhccccc--CccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchhhhe
Confidence 56666676666665432 4689999999999887653 235444556666533 3343 4456789999999
Q ss_pred EEEeeeC---CCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEee----cCceEEecccCCCcEEEE--ec-
Q psy1760 415 ISLEYSS---YLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFK----GLDRVLVNEALSGDIVLI--TG- 484 (793)
Q Consensus 415 ~~~~~~~---~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~----G~~~~~v~~a~aGdIv~i--~g- 484 (793)
.+++..+ +.|+++.|||.+|+|++||.|.+.|. + ...+|++|+.+. |..+.++++|.|||+|+| .|
T Consensus 406 ~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~--~--~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~ 481 (611)
T 3izq_1 406 LEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPS--E--QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKA 481 (611)
T ss_dssp CEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTT--T--EEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSC
T ss_pred eeeeccCccCCCeeEEEEEEEeceeccCCEEEEecC--C--ceEEEEEEEEcccccccccccccceecCCCcceEEeeec
Confidence 9999987 48999999999999999999999987 3 468999999874 777899999999999998 34
Q ss_pred -cceeecCCeEeCCCC
Q psy1760 485 -IEEICIGSTICDPSK 499 (793)
Q Consensus 485 -l~~i~iGdtl~~~~~ 499 (793)
..++.+||+||++++
T Consensus 482 ~~~di~rGdvl~~~~~ 497 (611)
T 3izq_1 482 YPEDIQNGDLAASVDY 497 (611)
T ss_dssp CTTSCCTTCEEBCSTT
T ss_pred cHhhCcceEEccCCCC
Confidence 478999999999877
No 32
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=4.7e-34 Score=321.14 Aligned_cols=258 Identities=28% Similarity=0.383 Sum_probs=207.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec-------------------
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN------------------- 271 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~------------------- 271 (793)
.+|+++||+|+|||||+++|++. ..|....|+++|+|+......+.+.
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~-------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~ 77 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGH 77 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC-------------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC-------------ccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCc
Confidence 58999999999999999999743 1255667888999997766555441
Q ss_pred ----CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCC-CchhHHHHHHHHHcCC-ccEEEEecccCCCCC-hhh
Q psy1760 272 ----GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALKLGF-KPIVVVNKIDRSNAR-PEW 344 (793)
Q Consensus 272 ----~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~~~i-p~IvvINKiD~~~a~-~~~ 344 (793)
...++|||||||.+|..++.+.++.+|++|||+||.+|. ++||++++..+..+++ |+|+|+||+|+.+.+ ..+
T Consensus 78 ~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~ 157 (410)
T 1kk1_A 78 ETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALE 157 (410)
T ss_dssp BCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHH
T ss_pred ccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHH
Confidence 178999999999999999999999999999999999997 9999999999888887 567889999997643 123
Q ss_pred hHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEe------
Q psy1760 345 VVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLE------ 418 (793)
Q Consensus 345 v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~------ 418 (793)
..+++.+++.... ...+|++++||++|. |++.|+++|.+.+|.|..+.+.|++++|.+++
T Consensus 158 ~~~~i~~~l~~~~----~~~~~~i~vSA~~g~----------gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~~~g 223 (410)
T 1kk1_A 158 NYRQIKEFIEGTV----AENAPIIPISALHGA----------NIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPG 223 (410)
T ss_dssp HHHHHHHHHTTST----TTTCCEEECBTTTTB----------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCSCCC
T ss_pred HHHHHHHHHHhcC----cCCCeEEEeeCCCCC----------CHHHHHHHHHHhCCCCccccCCCcEEEEEEEEeccCCC
Confidence 4555655554322 125799999999998 99999999999999998888899999999876
Q ss_pred --eeCCCceEEEEEEeecccccCCEEEEecCC----CCC----CCceeEeEEEEeecCceEEecccCCCcEEEEe-c---
Q psy1760 419 --YSSYLGKIGIGRILSGRIKSLQDVVIMNGP----DDK----PNKAKINQIRVFKGLDRVLVNEALSGDIVLIT-G--- 484 (793)
Q Consensus 419 --~~~~~G~v~~grV~sG~lk~G~~v~~~~~~----~g~----~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~-g--- 484 (793)
++++.|++++|||++|+|++||.|.+.+.. +|+ ....+|++|+.+ +.++++|.|||+|++. +
T Consensus 224 ~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~----~~~v~~a~aG~~v~~~~~~~~ 299 (410)
T 1kk1_A 224 TPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAG----GQFVEEAYPGGLVGVGTKLDP 299 (410)
T ss_dssp ----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEET----TEEESEECSSSCEEEEESSCG
T ss_pred ccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEEC----CeEecEEcCCCEEEEEEecCc
Confidence 346789999999999999999999998741 010 014688888854 4789999999999985 2
Q ss_pred -c--ceeecCCeEeCCCC
Q psy1760 485 -I--EEICIGSTICDPSK 499 (793)
Q Consensus 485 -l--~~i~iGdtl~~~~~ 499 (793)
+ .++..||+||+++.
T Consensus 300 ~~~~~d~~~G~vl~~~~~ 317 (410)
T 1kk1_A 300 YLTKGDLMAGNVVGKPGK 317 (410)
T ss_dssp GGTGGGTTTTCEEECTTC
T ss_pred ccchhhccceeEEecCCC
Confidence 2 46788999998764
No 33
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=2.1e-33 Score=315.70 Aligned_cols=258 Identities=27% Similarity=0.345 Sum_probs=198.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee---------------c----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY---------------N---- 271 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~---------------~---- 271 (793)
.+|+++||+|+|||||+++|++. ..|....|+++|+|+......+.+ .
T Consensus 9 ~~I~iiG~~d~GKSTLi~~L~g~-------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~ 75 (408)
T 1s0u_A 9 VNIGMVGHVDHGKTSLTKALTGV-------------WTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLA 75 (408)
T ss_dssp EEEEEESCTTSSHHHHHHHHHSC-------------CCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCC
T ss_pred eEEEEEcCCCCCHHHHHHHHhCC-------------ccccCcccccCCcEEEecccccccccccccccccccccccccCc
Confidence 58999999999999999999743 125566788899998766544332 1
Q ss_pred ----CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCC-CchhHHHHHHHHHcCC-ccEEEEecccCCCCC-hhh
Q psy1760 272 ----GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALKLGF-KPIVVVNKIDRSNAR-PEW 344 (793)
Q Consensus 272 ----~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~~~i-p~IvvINKiD~~~a~-~~~ 344 (793)
...++|||||||.+|..++.+.++.+|++|||+|+.+|. ++||++++..+..+++ |+|+|+||+|+...+ ..+
T Consensus 76 ~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~ 155 (408)
T 1s0u_A 76 ETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEE 155 (408)
T ss_dssp BCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTT
T ss_pred ccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHH
Confidence 178999999999999999999999999999999999997 8999999998888887 578999999997653 234
Q ss_pred hHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEee-----
Q psy1760 345 VVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEY----- 419 (793)
Q Consensus 345 v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~----- 419 (793)
..+++++++.... ...+|++++||++|. |+++|+++|.+.+|.|..+.+.|++++|.+++.
T Consensus 156 ~~~~i~~~l~~~~----~~~~~~i~vSA~~g~----------gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v~~~g 221 (408)
T 1s0u_A 156 NYEQIKEFVKGTI----AENAPIIPISAHHEA----------NIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPG 221 (408)
T ss_dssp HHHHHHHHHTTST----TTTCCEEEC----------------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCSS
T ss_pred HHHHHHHHHhhcC----CCCCeEEEeeCCCCC----------CHHHHHHHHHHhCCCCcccCCCCeEEEEEEEEeecCCC
Confidence 5566666655432 125789999999998 999999999999999988889999999998864
Q ss_pred ---eCCCceEEEEEEeecccccCCEEEEecCC----CCC----CCceeEeEEEEeecCceEEecccCCCcEEEEec----
Q psy1760 420 ---SSYLGKIGIGRILSGRIKSLQDVVIMNGP----DDK----PNKAKINQIRVFKGLDRVLVNEALSGDIVLITG---- 484 (793)
Q Consensus 420 ---~~~~G~v~~grV~sG~lk~G~~v~~~~~~----~g~----~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~g---- 484 (793)
+++.|.++.|+|.+|+|++||.|.+.|.. +|+ ....+|++|+.+. .++++|.|||+|++..
T Consensus 222 ~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~----~~~~~a~~G~~v~~~~~~~~ 297 (408)
T 1s0u_A 222 TEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGN----TILRKAHPGGLIGVGTTLDP 297 (408)
T ss_dssp CCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETT----EEESEECSSSCEEEECSSCG
T ss_pred cccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEECC----EEcCEEeCCCeEEEEeccCc
Confidence 45689999999999999999999998641 121 1257899998754 7899999999999952
Q ss_pred -c--ceeecCCeEeCCCC
Q psy1760 485 -I--EEICIGSTICDPSK 499 (793)
Q Consensus 485 -l--~~i~iGdtl~~~~~ 499 (793)
+ +++.+||+||+++.
T Consensus 298 ~~~~~~~~~G~vl~~~~~ 315 (408)
T 1s0u_A 298 YLTKSDALTGSVVGLPGT 315 (408)
T ss_dssp GGTGGGTTTTCEEESTTC
T ss_pred ccchhhccceeEEECCCC
Confidence 2 36788999998764
No 34
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=2.1e-34 Score=329.93 Aligned_cols=256 Identities=25% Similarity=0.316 Sum_probs=205.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++||+|+|||||+++|++... ...+|....|+++|+|++.....+.++++.++|||||||.+|..++
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~---------~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~ 90 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIAS---------TSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAV 90 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC-----------------------------CCCEEEETTEEEEECCCSSHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHCCCc---------ccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHH
Confidence 5899999999999999999975421 2346778889999999999999999999999999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCC-ChhhhHhHHHHHHhhh-cccccccCccEE
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-RPEWVVDATFDLFDKL-CATEEQLDFPVI 368 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a-~~~~v~~~i~~~~~~l-~~~~~~l~~Pvi 368 (793)
.++++.+|++|||+|+.+|+++||++++..+...++|.|+|+||+|+.+. +++.+.+++.+++... +.. .+|++
T Consensus 91 ~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~----~~~ii 166 (482)
T 1wb1_A 91 VSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLK----NSSII 166 (482)
T ss_dssp HHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGG----GCCEE
T ss_pred HHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccc----cceEE
Confidence 99999999999999999999999999999999999999999999999753 2445566666666544 222 47899
Q ss_pred EeecCCCCcccccccccCCchhhHHHHHhhcCcC--cCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEec
Q psy1760 369 YTSALHGYANENSKARQGNMIPLFEAILKYVPVH--KDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMN 446 (793)
Q Consensus 369 ~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p--~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~ 446 (793)
++||++|. |+++|+++|.+.++.| ..+.++||+++|.+++..++.|+++.|+|.+|+|++||.|.+.+
T Consensus 167 ~vSA~~g~----------gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p 236 (482)
T 1wb1_A 167 PISAKTGF----------GVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLP 236 (482)
T ss_dssp ECCTTTCT----------THHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTT
T ss_pred EEECcCCC----------CHHHHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEEEECC
Confidence 99999998 9999999999988766 66678899999999999999999999999999999999999987
Q ss_pred CCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--ccc--eeecCCeE-eCC
Q psy1760 447 GPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GIE--EICIGSTI-CDP 497 (793)
Q Consensus 447 ~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--gl~--~i~iGdtl-~~~ 497 (793)
. + ...+|++|+.+. .++++|.|||.|++. |++ ++..||+| +++
T Consensus 237 ~--~--~~~~V~~i~~~~----~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~ 284 (482)
T 1wb1_A 237 I--N--MSTKVRSIQYFK----ESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKD 284 (482)
T ss_dssp T--C--CCEEECCBCGGG----SCBCCCCSSCCCCEECSSCCSSCCCSSCBCCCTT
T ss_pred C--C--cEEEEeEEEECC----eEeeEecCCCEEEEEecCCCHhhccccceEecCC
Confidence 6 3 457999998664 689999999999884 754 68999999 543
No 35
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=3.4e-33 Score=325.96 Aligned_cols=297 Identities=23% Similarity=0.284 Sum_probs=219.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee------------------cC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY------------------NG 272 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~------------------~~ 272 (793)
.+|+++||+|||||||+++|++...... ..+|+|.......+.+ ..
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~~----------------e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~ 69 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAVASR----------------EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETL 69 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSCC--------------------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTC
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCccc----------------cCCceecccCeEEEeechhhhhcccccccccccccc
Confidence 4799999999999999999986522110 0123443322222222 22
Q ss_pred eEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCC-C----------
Q psy1760 273 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-R---------- 341 (793)
Q Consensus 273 ~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a-~---------- 341 (793)
..++|||||||.+|..++.++++.+|++|+|+|+++|+++||.++|+.+...++|+|+|+||+|+... .
T Consensus 70 ~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~ 149 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMET 149 (594)
T ss_dssp CEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999642 1
Q ss_pred ----hhhh-------HhHHHHHHhhhccccc--------ccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 342 ----PEWV-------VDATFDLFDKLCATEE--------QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 342 ----~~~v-------~~~i~~~~~~l~~~~~--------~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
.+.+ +.++.+.+...+...+ ...+|++++||++|. |+++|+++|...+|.+
T Consensus 150 sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~----------GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 150 FSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGE----------GIPELLTMLMGLAQQY 219 (594)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCT----------THHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCC----------CchhHHHHHHhhcccc
Confidence 0111 1122222222222211 234699999999998 9999999998877643
Q ss_pred c-----CCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEee--------cCceE
Q psy1760 403 K-----DNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFK--------GLDRV 469 (793)
Q Consensus 403 ~-----~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~--------G~~~~ 469 (793)
. .++++|++++|+++..+++.|+++++||++|+|++||.|++.+. ++ ....||++|+.+. +.+..
T Consensus 220 ~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~-~~-~~~~rV~~i~~~~~~~elr~~~~~~~ 297 (594)
T 1g7s_A 220 LREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTS-KD-VISTRIRSLLKPRPLEEMRESRKKFQ 297 (594)
T ss_dssp CSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBS-SS-EEEEECCEEEEECCCC----CCCSEE
T ss_pred chhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCC-CC-ceeEEEeEEEeccccchhhhccCCce
Confidence 2 35688999999999999999999999999999999999999876 33 2346999999873 56678
Q ss_pred EecccC--CCcEEEEeccceeecCCeEeCCCCCC--------CCCCCccCCCceEEEEEecCCCCCCcCccccchHHHHH
Q psy1760 470 LVNEAL--SGDIVLITGIEEICIGSTICDPSKPN--------GLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKN 539 (793)
Q Consensus 470 ~v~~a~--aGdIv~i~gl~~i~iGdtl~~~~~~~--------~l~~~~~~~P~~~~~~~~~~~p~~g~e~~~~~~~~l~~ 539 (793)
++++|. ||++|++.|++++.+||||+..+++. .+..+.+..+.+.+.+.+.. .| +.+.|.+
T Consensus 298 ~v~ea~~~aG~~v~~~~l~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkad~------~g---s~eal~~ 368 (594)
T 1g7s_A 298 KVDEVVAAAGIKIVAPGIDDVMAGSPLRVVTDPEKVREEILSEIEDIKIDTDEAGVVVKADT------LG---SLEAVVK 368 (594)
T ss_dssp ECSEEESSEEEEEECSSCTTBCTTCEEEECSSHHHHHHHHHHHHHTTSCBCSSSCCEEEESS------HH---HHHHHHH
T ss_pred EccEEcCCCCcEEEEcccCCCCCCCEEEecCCHHHHHHHHHHHHHhcccccccccEEEEeCC------CC---CHHHHHH
Confidence 999988 99999999999999999999876541 01122233444555554322 12 3466777
Q ss_pred Hhhhh
Q psy1760 540 RLDHE 544 (793)
Q Consensus 540 ~L~k~ 544 (793)
.|.++
T Consensus 369 ~l~~~ 373 (594)
T 1g7s_A 369 ILRDM 373 (594)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 77775
No 36
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=1.7e-32 Score=307.68 Aligned_cols=269 Identities=26% Similarity=0.264 Sum_probs=204.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee-----cCeEEEEecCCCccc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-----NGTRINIIDTPGHAD 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~-----~~~~i~iiDTPGh~d 285 (793)
.+|+++||+|+|||||+++|++..... ..+...............++++.......+.+ ....++|||||||.+
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~ 87 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAITGIWTSK-KLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEV 87 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHHSCCCCS-SSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhCccccc-ccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHH
Confidence 589999999999999999998642111 00111111111122233344443322211111 237899999999999
Q ss_pred chHHHHHHhhccCcEEEEEeCCCCC-CchhHHHHHHHHHcCC-ccEEEEecccCCCCC-hhhhHhHHHHHHhhhcccccc
Q psy1760 286 FGGEVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALKLGF-KPIVVVNKIDRSNAR-PEWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 286 f~~ev~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~~~i-p~IvvINKiD~~~a~-~~~v~~~i~~~~~~l~~~~~~ 362 (793)
|..++.++++.+|++|+|+|+.++. ++||++++..+...+. |+|+|+||+|+.+.+ ..+..+++.+++.....
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~---- 163 (403)
T 3sjy_A 88 LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWA---- 163 (403)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTT----
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCC----
Confidence 9999999999999999999999997 9999999999998887 678999999997642 23344455555443322
Q ss_pred cCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEee--------eCCCceEEEEEEeec
Q psy1760 363 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEY--------SSYLGKIGIGRILSG 434 (793)
Q Consensus 363 l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~--------~~~~G~v~~grV~sG 434 (793)
..+|++++||++|. |+++|+++|.+.+|.|..+.+.||+++|.+++. +++.|++++|+|.+|
T Consensus 164 ~~~~ii~vSA~~g~----------gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G 233 (403)
T 3sjy_A 164 ENVPIIPVSALHKI----------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQG 233 (403)
T ss_dssp TTCCEEECBTTTTB----------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEEEES
T ss_pred CCCEEEEEECCCCc----------ChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEEEeC
Confidence 25789999999998 999999999999999988889999999998764 556899999999999
Q ss_pred ccccCCEEEEecCCCCC----------CCceeEeEEEEeecCceEEecccCCCcEEEEe-----cc--ceeecCCeEeCC
Q psy1760 435 RIKSLQDVVIMNGPDDK----------PNKAKINQIRVFKGLDRVLVNEALSGDIVLIT-----GI--EEICIGSTICDP 497 (793)
Q Consensus 435 ~lk~G~~v~~~~~~~g~----------~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~-----gl--~~i~iGdtl~~~ 497 (793)
+|++||.|.+.|. ++ ....+|++|+.+. .++++|.|||+|++. ++ +++..||+||++
T Consensus 234 ~~~~gd~v~~~p~--~~~~~~~~~~~~~~~~~v~~i~~~~----~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G~vl~~~ 307 (403)
T 3sjy_A 234 LFKVDQEIKVLPG--LRVEKQGKVSYEPIFTKISSIRFGD----EEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLA 307 (403)
T ss_dssp CEETTCEEEEEEE--EEEEETTEEEEEEEEEEEEEEEETT----EEESEECSSSCEEEEESSCHHHHGGGTTTTCEEEET
T ss_pred EEecCCEEEEeCC--cccccccccccccccEEEEEEEECC----EEcCEEeCCCEEEEEeccccccchhhhccccEEeCC
Confidence 9999999999875 21 0146899998754 899999999999984 33 477899999987
Q ss_pred CCC
Q psy1760 498 SKP 500 (793)
Q Consensus 498 ~~~ 500 (793)
+++
T Consensus 308 ~~~ 310 (403)
T 3sjy_A 308 DAE 310 (403)
T ss_dssp TCC
T ss_pred CCC
Confidence 754
No 37
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.97 E-value=2.8e-33 Score=321.89 Aligned_cols=253 Identities=27% Similarity=0.326 Sum_probs=211.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee-cCeEEEEecCCCcccchHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGHADFGGE 289 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~-~~~~i~iiDTPGh~df~~e 289 (793)
..|+++||+|+|||||+++|.+... .....+|+|.+.....+.+ ++..++|||||||.+|...
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~~~----------------~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~ 68 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKTQV----------------AAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAM 68 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHHHH----------------HHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc----------------ccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHH
Confidence 4789999999999999999986521 1223467887777777776 5778999999999999999
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEE
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIY 369 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~ 369 (793)
+.++++.+|++|||+|+.++.++||.++|..+...++|+|+|+||+|+++++.+.+.+++.+.- +.......++|+++
T Consensus 69 ~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~--~~~e~~~~~~~iv~ 146 (537)
T 3izy_P 69 RARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYD--VVCEDYGGDVQAVH 146 (537)
T ss_dssp BBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTT--SCCCCSSSSEEECC
T ss_pred HHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhh--hhHHhcCCCceEEE
Confidence 9999999999999999999999999999999999999999999999998876666555554321 11112223578999
Q ss_pred eecCCCCcccccccccCCchhhHHHHHhhcC--cCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecC
Q psy1760 370 TSALHGYANENSKARQGNMIPLFEAILKYVP--VHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNG 447 (793)
Q Consensus 370 ~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp--~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~ 447 (793)
+||++|. |+++|+++|...++ .+..+++.|+++.|++++.+++.|++++|+|.+|+|++||.+..
T Consensus 147 vSAktG~----------GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~~--- 213 (537)
T 3izy_P 147 VSALTGE----------NMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVA--- 213 (537)
T ss_dssp CCSSSSC----------SSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEECC---
T ss_pred EECCCCC----------CchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEEe---
Confidence 9999998 99999999987654 44456788999999999999999999999999999999998743
Q ss_pred CCCCCCceeEeEEEEeecCceEEecccCCCcEEEEecccee-ecCCeEeCCCCC
Q psy1760 448 PDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEI-CIGSTICDPSKP 500 (793)
Q Consensus 448 ~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i-~iGdtl~~~~~~ 500 (793)
| ....+|++|+.+.| .++++|.|||+|+|+|++++ ..||+|+..+++
T Consensus 214 --g-~~~~kVr~i~~~~g---~~v~~A~~G~~V~i~g~~~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 214 --G-KSWAKVRLMFDENG---RAVNEAYPSMPVGIIGWRDLPSAGDEILEVESE 261 (537)
T ss_dssp --S-SCCEEEEEEEECCC---CCSCCSCCSTTCCCCSSEEEEEEESSCCSCCSS
T ss_pred --C-CceEEEEEEEcCCC---CCCcEEcCCCEEEEECCCCCCCCCCEEEecCCh
Confidence 2 23579999998766 67999999999999999986 899999988665
No 38
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.97 E-value=1.6e-32 Score=313.04 Aligned_cols=251 Identities=25% Similarity=0.256 Sum_probs=206.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++||+|||||||+++|+.... .....+|+|++.....+.+++..++|||||||.+|...+
T Consensus 5 ~~V~IvGhvd~GKTTLl~~L~~~~v----------------~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~ 68 (501)
T 1zo1_I 5 PVVTIMGHVDHGKTSLLEYIRSTKV----------------ASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMR 68 (501)
T ss_dssp CCEEEEESTTSSSHHHHHHHHHHHH----------------SBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSB
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC----------------ccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHH
Confidence 5899999999999999999975411 112247888888888888899999999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccc--cCccEE
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ--LDFPVI 368 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~--l~~Pvi 368 (793)
.++++.+|++|||+|+.+|+++||.+++..+...++|+|+++||+|+.+++++++.+++. ..+...+. ..+|++
T Consensus 69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~----~~~~~~~~~~~~~~~v 144 (501)
T 1zo1_I 69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELS----QYGILPEEWGGESQFV 144 (501)
T ss_dssp CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCC----CCCCCTTCCSSSCEEE
T ss_pred HHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHH----HhhhhHHHhCCCccEE
Confidence 999999999999999999999999999999999999999999999998766554433321 11111111 247999
Q ss_pred EeecCCCCcccccccccCCchhhHHHHHhhc--CcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEec
Q psy1760 369 YTSALHGYANENSKARQGNMIPLFEAILKYV--PVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMN 446 (793)
Q Consensus 369 ~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l--p~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~ 446 (793)
++||++|. |+++|+++|.... +.+..+++.|+++.|++++.+++.|++++++|.+|+|++||.+.+.+
T Consensus 145 ~vSAktG~----------gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~ 214 (501)
T 1zo1_I 145 HVSAKAGT----------GIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGF 214 (501)
T ss_dssp ECCTTTCT----------TCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEB
T ss_pred EEeeeecc----------CcchhhhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEcc
Confidence 99999998 9999999997643 33445568899999999999999999999999999999999998754
Q ss_pred CCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEecccee-ecCCeEeCCCCC
Q psy1760 447 GPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEI-CIGSTICDPSKP 500 (793)
Q Consensus 447 ~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i-~iGdtl~~~~~~ 500 (793)
. ..+|++|+...| .++++|.||+.|.+.|++++ ..||+++...++
T Consensus 215 ~------~~kVr~i~~~~g---~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~~~~~ 260 (501)
T 1zo1_I 215 E------YGRVRAMRNELG---QEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDE 260 (501)
T ss_dssp S------SCEEEEECCTTT---TSEEEECCSSCSSSEEECSCCCTTEEEEEECSS
T ss_pred c------eeEEEEEEecCC---CcCcEeccCCcEEEeCCCCCCCCCCEEEecCCH
Confidence 3 468888876554 56889999999999999885 789999865543
No 39
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.82 E-value=2e-21 Score=221.46 Aligned_cols=236 Identities=19% Similarity=0.204 Sum_probs=138.3
Q ss_pred CCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCCceeeEEeccchhHHHH
Q psy1760 102 NSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRV 181 (793)
Q Consensus 102 ~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~~~~~~~~~s~gtyIRs 181 (793)
-|+.+++.|++++.|.+++....|.. ++-+ ...+....+||+++++.......-...+..
T Consensus 153 ~t~~~~~~a~~~l~G~ls~~i~~lr~------~L~~--------------~~a~iea~iDf~eedi~~~~~~~l~~~i~~ 212 (476)
T 3gee_A 153 RTESAYRTAVSQMKGDLSVRLGGLRE------QLIR--------------SCALIELELDFSEEDVEFQSRDELTMQIET 212 (476)
T ss_dssp CSHHHHHHHHHHHHTHHHHHHHHHHT------HHHH--------------HHHTTTTCSSCCSSCCSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhCCcHHHHHHHHHH------HHHH--------------HHHHhheecCCCcccccchhHHHHHHHHHH
Confidence 37788899999999998887777765 1111 111222346787765443211112233444
Q ss_pred HHHHHhhhhccchHHHHHHhhcccccccccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEE
Q psy1760 182 LSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITI 261 (793)
Q Consensus 182 L~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi 261 (793)
+..++.+.+......+.+| ..+ +|+++|++|+|||||+|+|++. +........|+|+
T Consensus 213 l~~~l~~~~~~~~~~~~~r----~~~----kV~ivG~~nvGKSSLln~L~~~---------------~~a~vs~~~gtT~ 269 (476)
T 3gee_A 213 LRSEVNRLIDSYQHGRIVS----EGV----STVIAGKPNAGKSTLLNTLLGQ---------------ERAIVSHMPGTTR 269 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HCE----EEEEECCTTSSHHHHHHHCC------------------------------
T ss_pred HHHHHHHHHHHHHhhHhhc----CCC----EEEEECCCCCCHHHHHHHHhCC---------------CCcccCCCCCceE
Confidence 4444444433222222222 223 6999999999999999999865 2233455678899
Q ss_pred eeeeeEEeecCeEEEEecCCCcccchHHHHH--------HhhccCcEEEEEeCCCCCCc----hhHHHHHHHHHcCCccE
Q psy1760 262 FSKNCSIEYNGTRINIIDTPGHADFGGEVER--------ILSMVDNVLLLIDAVEGPMP----QTRFVTRKALKLGFKPI 329 (793)
Q Consensus 262 ~~~~~~~~~~~~~i~iiDTPGh~df~~ev~~--------~l~~aD~allVVDa~~g~~~----qt~~~l~~~~~~~ip~I 329 (793)
+.....+.+++..++||||||+.++...++. .+..+|++|+|+|++++... ....++..+. ++|+|
T Consensus 270 d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piI 347 (476)
T 3gee_A 270 DYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFL 347 (476)
T ss_dssp ---CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEE
T ss_pred EEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEE
Confidence 9888899999999999999999887766544 46789999999999998766 3334444433 78999
Q ss_pred EEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC-cCc
Q psy1760 330 VVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP-VHK 403 (793)
Q Consensus 330 vvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp-~p~ 403 (793)
+|+||+|+...+.... +.+.+.+ ..|++++||++|. |+++|+++|.+.++ .+.
T Consensus 348 vV~NK~Dl~~~~~~~~-----~~l~~~~------~~~~i~vSAktg~----------GI~eL~~~i~~~~~~~~~ 401 (476)
T 3gee_A 348 TVANKLDRAANADALI-----RAIADGT------GTEVIGISALNGD----------GIDTLKQHMGDLVKNLDK 401 (476)
T ss_dssp EEEECTTSCTTTHHHH-----HHHHHHH------TSCEEECBTTTTB----------SHHHHHHHHTHHHHSSCC
T ss_pred EEEECcCCCCccchhH-----HHHHhcC------CCceEEEEECCCC----------CHHHHHHHHHHHHhhccC
Confidence 9999999986543211 1122211 1579999999998 99999999998887 543
No 40
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.78 E-value=1.4e-19 Score=202.96 Aligned_cols=178 Identities=22% Similarity=0.333 Sum_probs=132.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCe-EEEEecCCCcccchHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT-RINIIDTPGHADFGGE 289 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~-~i~iiDTPGh~df~~e 289 (793)
.+|+++|++|+|||||+++|+... ....+..+|+|++.....+.+.+. .++||||||+.+|...
T Consensus 35 ~kI~IvG~~~vGKSTLin~L~~~~---------------~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l 99 (423)
T 3qq5_A 35 RYIVVAGRRNVGKSSFMNALVGQN---------------VSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGEL 99 (423)
T ss_dssp EEEEEECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEETTTEEEEEEECSSTTCCCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC---------------CCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccch
Confidence 689999999999999999998652 223455678899988888988876 9999999999988643
Q ss_pred -------HHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccc
Q psy1760 290 -------VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 290 -------v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~ 362 (793)
+..++..+|++|+|+|+ +...++..++..+.+.++|+|+|+||+|+..++..+..++ + ...
T Consensus 100 ~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~----l------~~~ 167 (423)
T 3qq5_A 100 GRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGL----Y------ESR 167 (423)
T ss_dssp CCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHH----S------SCC
T ss_pred hHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHH----H------HHH
Confidence 45678889999999999 7788999999999999999999999999987654322211 1 123
Q ss_pred cCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcC-------CCCCCceEEEEEEeeeCCCce
Q psy1760 363 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD-------NSNNPLQLQIISLEYSSYLGK 425 (793)
Q Consensus 363 l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~-------~~~~p~~~~V~~~~~~~~~G~ 425 (793)
.++|++++||++|. |++++++.|.+.++.+.. -..+.+.+++..+......|+
T Consensus 168 ~g~~v~~vSAktg~----------gI~eL~~~L~~~l~~~~e~~l~~dLv~~gd~v~lv~pid~~~pkgr 227 (423)
T 3qq5_A 168 YEAKVLLVSALQKK----------GFDDIGKTISEILPGDEEIPYLGDLIDGGDLVILVVPIDLGAPKGR 227 (423)
T ss_dssp TTCCCCCCSSCCTT----------STTTHHHHHHHHSCCCCCCCSCSCCCCTTCCEEEECCCSCCSSTTC
T ss_pred cCCCEEEEECCCCC----------CHHHHHHHHHHhhhhhccCcchhhccccCceEEEEeeccccCcCCc
Confidence 35789999999998 999999999999966521 123456777776666555555
No 41
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.78 E-value=3.7e-20 Score=210.27 Aligned_cols=234 Identities=21% Similarity=0.206 Sum_probs=149.1
Q ss_pred CCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCCceeeEEeccchhHHHH
Q psy1760 102 NSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRV 181 (793)
Q Consensus 102 ~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~~~~~~~~~s~gtyIRs 181 (793)
-|+.+++.|++++.|.+.+....|.. .......+.+..+||++ ++.....-.-...+..
T Consensus 145 ~t~~~~~~a~~~l~g~~~~~~~~~r~--------------------~l~~~~a~iEa~iDf~e-d~~~~~~~~~~~~i~~ 203 (462)
T 3geh_A 145 RSPQAAQTALAGLQGKLAHPIRQLRA--------------------NCLDILAEIEARIDFEE-DLPPLDDEAIISDIEN 203 (462)
T ss_dssp CSHHHHHHHHHHHHTTTHHHHHHHHH--------------------HHHHHHHHHHHHTTSSS-SSCCCCTTTHHHHHHH
T ss_pred CCHHHHHHHHHHhchhHHHHHHHHHH--------------------HHHHHHHHHHhhccccc-cCChhhHHHHHHHHHH
Confidence 37888999999999998877665554 11111112222356755 3332212222344555
Q ss_pred HHHHHhhhhccchHHHHHHhhcccccccccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEE
Q psy1760 182 LSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITI 261 (793)
Q Consensus 182 L~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi 261 (793)
+..++...+........+| ..+ +|+++|++|+|||||+|+|++... .......|+|.
T Consensus 204 l~~~l~~~~~~~~~~~~~r----~~~----kV~ivG~~nvGKSSLln~L~~~~~---------------a~v~~~~gtT~ 260 (462)
T 3geh_A 204 IAAEISQLLATKDKGELLR----TGL----KVAIVGRPNVGKSSLLNAWSQSDR---------------AIVTDLPGTTR 260 (462)
T ss_dssp HHHHHHHHTTTHHHHHHHH----HCE----EEEEEECTTSSHHHHHHHHHHHHB---------------SCCSCCTTCCH
T ss_pred HHHHHHHHHHHhhhhhhhc----CCC----EEEEEcCCCCCHHHHHHHHhCCCc---------------ccccCCCCeeE
Confidence 5556655554433222222 223 699999999999999999987622 22333457777
Q ss_pred eeeeeEEeecCeEEEEecCCCcccchHHHHH--------HhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEe
Q psy1760 262 FSKNCSIEYNGTRINIIDTPGHADFGGEVER--------ILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 333 (793)
Q Consensus 262 ~~~~~~~~~~~~~i~iiDTPGh~df~~ev~~--------~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvIN 333 (793)
+.....+.+++..++||||||+.++...++. .+..+|++|+|+|++++...+...+++.+.. .|+|+|+|
T Consensus 261 d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~N 338 (462)
T 3geh_A 261 DVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMN 338 (462)
T ss_dssp HHHHHEEEETTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEE
T ss_pred EEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEE
Confidence 7777778889999999999999887666554 3678999999999999888777777776643 68999999
Q ss_pred cccCCCCChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCc
Q psy1760 334 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 403 (793)
Q Consensus 334 KiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 403 (793)
|+|+...+... . +..+ ....|++++||++|. |+++|++.|.+.+....
T Consensus 339 K~Dl~~~~~~~---~----~~~~-----~~~~~~i~iSAktg~----------Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 339 KIDLVEKQLIT---S----LEYP-----ENITQIVHTAAAQKQ----------GIDSLETAILEIVQTGK 386 (462)
T ss_dssp CTTSSCGGGST---T----CCCC-----TTCCCEEEEBTTTTB----------SHHHHHHHHHHHHTTSS
T ss_pred CCCCCcchhhH---H----HHHh-----ccCCcEEEEECCCCC----------CHHHHHHHHHHHHhccC
Confidence 99997643211 0 1111 124689999999998 99999999998876543
No 42
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.77 E-value=1.3e-18 Score=187.97 Aligned_cols=161 Identities=29% Similarity=0.332 Sum_probs=123.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec-CeEEEEecCCCcccch--
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-GTRINIIDTPGHADFG-- 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~-~~~i~iiDTPGh~df~-- 287 (793)
-.|+++|++|+|||||+|+|++.... ......++|+......+.++ +..++||||||+.++.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~---------------i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~ 75 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVS---------------IISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKS 75 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCS---------------CCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcc---------------ccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccc
Confidence 46899999999999999999876322 23344567777777777888 9999999999997655
Q ss_pred --------HHHHHHhhccCcEEEEEeCCCCCCchhHHH-HHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcc
Q psy1760 288 --------GEVERILSMVDNVLLLIDAVEGPMPQTRFV-TRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA 358 (793)
Q Consensus 288 --------~ev~~~l~~aD~allVVDa~~g~~~qt~~~-l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~ 358 (793)
..+..++..+|++|+|+|++++...++... ++.+...++|+++|+||+|+... .....+.+..+...++
T Consensus 76 ~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~-~~~~~~~~~~l~~~~~- 153 (308)
T 3iev_A 76 DVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGP-AKNVLPLIDEIHKKHP- 153 (308)
T ss_dssp CHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSS-GGGGHHHHHHHHHHCT-
T ss_pred hhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCC-HHHHHHHHHHHHHhcc-
Confidence 566778899999999999999988888887 77778889999999999999732 1222222222211111
Q ss_pred cccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 359 TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 359 ~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
...+++++||++|. |+++|++.|.+++|..
T Consensus 154 ----~~~~i~~vSA~~g~----------gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 154 ----ELTEIVPISALKGA----------NLDELVKTILKYLPEG 183 (308)
T ss_dssp ----TCCCEEECBTTTTB----------SHHHHHHHHHHHSCBC
T ss_pred ----CCCeEEEEeCCCCC----------CHHHHHHHHHHhCccC
Confidence 12579999999998 9999999999998753
No 43
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.77 E-value=9.2e-19 Score=188.50 Aligned_cols=156 Identities=25% Similarity=0.290 Sum_probs=119.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCccc-----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD----- 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d----- 285 (793)
..|+++|++|+|||||+|+|++..... .....++|.......+.+++.+++||||||+.+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~i---------------vs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l 72 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAP---------------ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDAL 72 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSC---------------CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceee---------------ecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHH
Confidence 468999999999999999999763321 112234444444455667899999999999887
Q ss_pred ---chHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHc--CCccEEEEecccCCCCChhhhHhHHHHHHhhhcccc
Q psy1760 286 ---FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 360 (793)
Q Consensus 286 ---f~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~--~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~ 360 (793)
|...+..+++.+|++|+|+|++++....+..+++.+... +.|+|+|+||+|+...+.. +.+.+ ..+ .
T Consensus 73 ~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~----~~~-~-- 144 (301)
T 1wf3_A 73 GEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE-AMKAY----HEL-L-- 144 (301)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH-HHHHH----HHT-S--
T ss_pred HHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH-HHHHH----HHh-c--
Confidence 566777889999999999999998888888788888777 8999999999999754221 22222 222 1
Q ss_pred cccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 361 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 361 ~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
...+++++||++|. |++.|++.|.+.+|.
T Consensus 145 --~~~~~~~iSA~~g~----------gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 145 --PEAEPRMLSALDER----------QVAELKADLLALMPE 173 (301)
T ss_dssp --TTSEEEECCTTCHH----------HHHHHHHHHHTTCCB
T ss_pred --CcCcEEEEeCCCCC----------CHHHHHHHHHHhccc
Confidence 12368999999998 999999999988864
No 44
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.75 E-value=1.9e-18 Score=195.60 Aligned_cols=192 Identities=21% Similarity=0.251 Sum_probs=132.0
Q ss_pred eEEeccchhHHHHHHHHHhhhhccchHHHHHHhhcccccccccceeeeecccCCcceehhhhhhccCccccccccccccc
Q psy1760 169 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIM 248 (793)
Q Consensus 169 ~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~ 248 (793)
+.+.+..|.-+..|...+.+.+.... ....-.-..+|+++|++|+|||||+|+|++..
T Consensus 142 ~~iSA~~g~gv~~L~~~i~~~l~~~~--------~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~-------------- 199 (436)
T 2hjg_A 142 YPISGTHGLGLGDLLDAVAEHFKNIP--------ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE-------------- 199 (436)
T ss_dssp EECBTTTTBTHHHHHHHHHHTGGGCC--------SSCCCTTCEEEEEECSTTSSHHHHHHHHHTST--------------
T ss_pred EEEeCcCCCChHHHHHHHHHhcCccc--------cccccccCcEEEEEcCCCCCHHHHHHHHhCCC--------------
Confidence 34555667777777777765553110 00000112489999999999999999998652
Q ss_pred cchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH----------H-HHHHhhccCcEEEEEeCCCCCCchhHHH
Q psy1760 249 DSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG----------E-VERILSMVDNVLLLIDAVEGPMPQTRFV 317 (793)
Q Consensus 249 D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~----------e-v~~~l~~aD~allVVDa~~g~~~qt~~~ 317 (793)
....+..+|+|++.....+.+++..++||||||+.++.. . ..++++.+|++|+|+|++++...|+..+
T Consensus 200 -~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~ 278 (436)
T 2hjg_A 200 -RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRI 278 (436)
T ss_dssp -TEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHH
T ss_pred -ceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHH
Confidence 222345678999998889999999999999999965443 1 2357888999999999999999999999
Q ss_pred HHHHHHcCCccEEEEecccCCCCCh---hhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHH
Q psy1760 318 TRKALKLGFKPIVVVNKIDRSNARP---EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEA 394 (793)
Q Consensus 318 l~~~~~~~ip~IvvINKiD~~~a~~---~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~ 394 (793)
+..+...+.|+|+|+||+|+...+. ++..+++.+.+... ..+|++++||++|. |+++|++.
T Consensus 279 ~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~SA~tg~----------~v~~l~~~ 342 (436)
T 2hjg_A 279 AGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL------DYAPILFMSALTKK----------RIHTLMPA 342 (436)
T ss_dssp HHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGG------TTSCEEECCTTTCT----------TGGGHHHH
T ss_pred HHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccC------CCCCEEEEecccCC----------CHHHHHHH
Confidence 9988889999999999999976532 23333444333221 24689999999998 77777776
Q ss_pred HHhhc
Q psy1760 395 ILKYV 399 (793)
Q Consensus 395 I~~~l 399 (793)
+.+.+
T Consensus 343 i~~~~ 347 (436)
T 2hjg_A 343 IIKAS 347 (436)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 45
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.75 E-value=3.8e-18 Score=164.09 Aligned_cols=152 Identities=25% Similarity=0.315 Sum_probs=112.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCccc-----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD----- 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d----- 285 (793)
.+|+++|++|+|||||+++|++.... ..+...++|.......+.+++..+.+|||||+.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 66 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSA---------------VVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWE 66 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEETTEEEEEEECGGGCSSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCee---------------eccCCCCceecceEEEEEeCCceEEEEECCCCCCccchH
Confidence 47899999999999999999865311 1223345666666777888899999999999987
Q ss_pred --chHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 286 --FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 286 --f~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
+.......++.+|++++|+|+.++.......+.+.+...+.|+++|+||+|+...+ +++.++. . .
T Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-----~~~~~~~-~-------~ 133 (161)
T 2dyk_A 67 KKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE-----LYLGPLY-G-------L 133 (161)
T ss_dssp HHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG-----GGCGGGG-G-------G
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch-----HhHHHHH-h-------C
Confidence 34555667899999999999999877766777777777899999999999997541 1111111 1 2
Q ss_pred Cc-cEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 364 DF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 364 ~~-Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
.+ +++++||++|. |++++++.|.+.+|
T Consensus 134 ~~~~~~~~Sa~~~~----------gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 134 GFGDPIPTSSEHAR----------GLEELLEAIWERLP 161 (161)
T ss_dssp SSCSCEECBTTTTB----------SHHHHHHHHHHHCC
T ss_pred CCCCeEEEecccCC----------ChHHHHHHHHHhCc
Confidence 34 68999999998 99999999988875
No 46
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.75 E-value=1.3e-18 Score=177.58 Aligned_cols=170 Identities=18% Similarity=0.119 Sum_probs=120.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEe-ecCeEEEEecCCCcccc---
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE-YNGTRINIIDTPGHADF--- 286 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~-~~~~~i~iiDTPGh~df--- 286 (793)
.+|+++|++|+|||||+++|++.... .......|+|.......+. +++..++||||||+.+.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 95 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQKRL--------------AFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVP 95 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCSSS--------------SCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcc--------------eeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCC
Confidence 58999999999999999999876311 1122334556555555555 56789999999997442
Q ss_pred -------hHHHHHHhhc---cCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCC-hhhhHhHHHHHHhh
Q psy1760 287 -------GGEVERILSM---VDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDK 355 (793)
Q Consensus 287 -------~~ev~~~l~~---aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~-~~~v~~~i~~~~~~ 355 (793)
...+...++. +|++++|+|+.++.......++..+...++|+++|+||+|+...+ .....+++.+.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~ 175 (223)
T 4dhe_A 96 GAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDA 175 (223)
T ss_dssp STHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHh
Confidence 3334444544 788999999999888888888888888899999999999997532 22234444444433
Q ss_pred hcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcC
Q psy1760 356 LCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD 404 (793)
Q Consensus 356 l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~ 404 (793)
..........|++++||++|. |+++|++.|.+.++.+..
T Consensus 176 ~~~~~~~~~~~~~~~SA~~g~----------gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 176 YRDAGYAGKLTVQLFSALKRT----------GLDDAHALIESWLRPAAA 214 (223)
T ss_dssp HHHHTCCSCEEEEEEBTTTTB----------SHHHHHHHHHHHHC----
T ss_pred hhhcccCCCCeEEEeecCCCc----------CHHHHHHHHHHhcCccCC
Confidence 211011235689999999998 999999999999987654
No 47
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.74 E-value=1.3e-18 Score=170.53 Aligned_cols=160 Identities=31% Similarity=0.388 Sum_probs=121.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|.+|+|||||+++|+...... ...+++|.......+.+++..+++|||||+.+|....
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 72 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHSKVTE----------------QEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMR 72 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTTCSSC----------------SSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcccc----------------CCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHH
Confidence 489999999999999999998652211 1122334444445677788999999999999998887
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc--CccEE
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL--DFPVI 368 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l--~~Pvi 368 (793)
.+.+..+|++|+|+|+.++...++...+..+...++|+++|+||+|+...+.+++. +.+.......... .++++
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 148 (178)
T 2lkc_A 73 ARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVM----QELMEYNLVPEEWGGDTIFC 148 (178)
T ss_dssp CSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHH----HHHTTTTCCBTTTTSSEEEE
T ss_pred HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHH----HHHHhcCcChhHcCCcccEE
Confidence 78889999999999999988888888888888889999999999999875433332 2222222211122 26899
Q ss_pred EeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 369 YTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 369 ~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
++||++|. |+++|++.|.+.+.
T Consensus 149 ~~Sa~~~~----------gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 149 KLSAKTKE----------GLDHLLEMILLVSE 170 (178)
T ss_dssp ECCSSSSH----------HHHHHHHHHHHHHH
T ss_pred EEecCCCC----------CHHHHHHHHHHhhh
Confidence 99999998 89999999877654
No 48
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.74 E-value=6.2e-19 Score=201.06 Aligned_cols=230 Identities=20% Similarity=0.207 Sum_probs=150.4
Q ss_pred CHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecCCceeeEEeccchhHHHHH
Q psy1760 103 SIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVL 182 (793)
Q Consensus 103 t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~~~~~~~~~~s~gtyIRsL 182 (793)
|+.+++.|++++.|.+.+..-.|.. ++..++ .. ++ ..+||+++ +.....- -...++.+
T Consensus 166 t~~~~~~a~~~l~g~l~~~~~~~r~------~l~~~~-~~--ie-----------~~idf~ee-i~~~~~~-i~~~~~~l 223 (482)
T 1xzp_A 166 SETSLKLSLRNLKGGLRDFVDSLRR------ELIEVL-AE--IR-----------VELDYPDE-IETNTGE-VVTRLERI 223 (482)
T ss_dssp SHHHHHHHHHHHTTHHHHHHHHHHH------HHHHHH-HH--HH-----------HHHHSTTT-CCCCHHH-HHHHHHHH
T ss_pred cHHHHHHHHHhcchhHhHHHHHHHH------HHHHHH-HH--hh-----------hcCCCCcc-ccchHHH-HHHHHHHH
Confidence 6778888999999988776555543 111111 00 11 11566654 3320000 22233333
Q ss_pred HHHHhhhhccchHHHHHHhhcccccccccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEe
Q psy1760 183 SEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIF 262 (793)
Q Consensus 183 ~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~ 262 (793)
..+|...+........+| .. .+|+|+|.+|+|||||+|+|++.. ...+....|+|++
T Consensus 224 ~~eL~~l~~~~~~~~~~r----~~----~kV~ivG~pnvGKSSLln~L~~~~---------------~a~vs~~~gTT~d 280 (482)
T 1xzp_A 224 KEKLTEELKKADAGILLN----RG----LRMVIVGKPNVGKSTLLNRLLNED---------------RAIVTDIPGTTRD 280 (482)
T ss_dssp HHHHHHHHHHHHHHHHHH----HC----EEEEEECCHHHHTCHHHHHHHHHT---------------BCCCCCSSCCSSC
T ss_pred HHHHHHHHHhhhhhhhcc----CC----CEEEEECcCCCcHHHHHHHHHCCC---------------CCccCCCCCeeee
Confidence 444433332211111111 12 379999999999999999998762 2233445688888
Q ss_pred eeeeEEeecCeEEEEecCCCcc-cchH--------HHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEe
Q psy1760 263 SKNCSIEYNGTRINIIDTPGHA-DFGG--------EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 333 (793)
Q Consensus 263 ~~~~~~~~~~~~i~iiDTPGh~-df~~--------ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvIN 333 (793)
.....+.+++..++||||||+. ++.. .....+..+|++|+|+|++++...+...+++.+ .+.|+|+|+|
T Consensus 281 ~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~N 358 (482)
T 1xzp_A 281 VISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVIN 358 (482)
T ss_dssp SCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEE
T ss_pred eEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEE
Confidence 8888899999999999999998 6542 234678899999999999988776666666655 3789999999
Q ss_pred cccCCCCChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 334 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 334 KiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
|+|+.... ..+++.+.+ + ...|++++||++|. |+++|+++|.+.+.
T Consensus 359 K~DL~~~~---~~~~~~~~~---~-----~~~~~i~iSAktg~----------Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 359 KVDVVEKI---NEEEIKNKL---G-----TDRHMVKISALKGE----------GLEKLEESIYRETQ 404 (482)
T ss_dssp ECSSCCCC---CHHHHHHHH---T-----CSTTEEEEEGGGTC----------CHHHHHHHHHHHTH
T ss_pred Cccccccc---CHHHHHHHh---c-----CCCcEEEEECCCCC----------CHHHHHHHHHHHHh
Confidence 99997531 123333321 1 13589999999998 99999999987654
No 49
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.73 E-value=3.7e-18 Score=183.82 Aligned_cols=157 Identities=21% Similarity=0.245 Sum_probs=116.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcc-c----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA-D---- 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~-d---- 285 (793)
..|+|+|++|+|||||+|+|++....+ .....++|.......+.+++..++++||||+. .
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i---------------~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~ 73 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISI---------------TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRA 73 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEE---------------CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccc---------------cCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhh
Confidence 479999999999999999998763211 11223444444445567889999999999997 3
Q ss_pred ----chHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccc
Q psy1760 286 ----FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 361 (793)
Q Consensus 286 ----f~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~ 361 (793)
|...+.+++..+|++++|+|+.+ +..+++.+++.+...+.|.|+|+||+|+... .....+.+.++...
T Consensus 74 l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~-~~~~~~~l~~l~~~------ 145 (301)
T 1ega_A 74 INRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQE-KADLLPHLQFLASQ------ 145 (301)
T ss_dssp HHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCC-HHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCcc-HHHHHHHHHHHHHh------
Confidence 33334556788999999999988 8888888888888788999999999999752 22222333322211
Q ss_pred ccCc-cEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 362 QLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 362 ~l~~-Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
..+ +++++||++|. |++.|++.|.+.+|.
T Consensus 146 -~~~~~~i~iSA~~g~----------~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 146 -MNFLDIVPISAETGL----------NVDTIAAIVRKHLPE 175 (301)
T ss_dssp -SCCSEEEECCTTTTT----------THHHHHHHHHTTCCB
T ss_pred -cCcCceEEEECCCCC----------CHHHHHHHHHHhCCc
Confidence 123 58999999998 999999999988874
No 50
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.71 E-value=2.6e-17 Score=187.27 Aligned_cols=193 Identities=21% Similarity=0.244 Sum_probs=135.3
Q ss_pred EEeccchhHHHHHHHHHhhhhccchHHHHHHhhcccccccccceeeeecccCCcceehhhhhhccCcccccccccccccc
Q psy1760 170 RIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMD 249 (793)
Q Consensus 170 ~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D 249 (793)
.+.+..|.-+..|...+.+.+... . .........+|+++|++|+|||||+++|++..
T Consensus 163 ~iSA~~g~gv~~L~~~i~~~l~~~-------~-~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~--------------- 219 (456)
T 4dcu_A 163 PISGTHGLGLGDLLDAVAEHFKNI-------P-ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE--------------- 219 (456)
T ss_dssp ECCTTTCTTHHHHHHHHHTTGGGS-------C-SSCCCTTCEEEEEECSTTSSHHHHHHHHHTST---------------
T ss_pred EeecccccchHHHHHHHHhhcccc-------c-ccccccccceeEEecCCCCCHHHHHHHHhCCC---------------
Confidence 344556667777777666544211 0 00011122589999999999999999998652
Q ss_pred chhhccccceEEeeeeeEEeecCeEEEEecCCCc----------ccchHH-HHHHhhccCcEEEEEeCCCCCCchhHHHH
Q psy1760 250 SNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH----------ADFGGE-VERILSMVDNVLLLIDAVEGPMPQTRFVT 318 (793)
Q Consensus 250 ~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh----------~df~~e-v~~~l~~aD~allVVDa~~g~~~qt~~~l 318 (793)
....+...|+|.+.....+.+++..++||||||+ ..|... ...+++.+|++|+|+|++++...++..++
T Consensus 220 ~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~ 299 (456)
T 4dcu_A 220 RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIA 299 (456)
T ss_dssp TEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHH
T ss_pred ccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHH
Confidence 2233455688988888889999999999999994 444433 23468899999999999999999999999
Q ss_pred HHHHHcCCccEEEEecccCCCCCh---hhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHH
Q psy1760 319 RKALKLGFKPIVVVNKIDRSNARP---EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAI 395 (793)
Q Consensus 319 ~~~~~~~ip~IvvINKiD~~~a~~---~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I 395 (793)
..+...+.|+|+|+||+|+...+. ++..+.+.+.+..+ ...|++++||++|. |+++|++.+
T Consensus 300 ~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~SA~~g~----------gv~~l~~~i 363 (456)
T 4dcu_A 300 GYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL------DYAPILFMSALTKK----------RIHTLMPAI 363 (456)
T ss_dssp HHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGG------TTSCEEECCTTTCT----------TGGGHHHHH
T ss_pred HHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccC------CCCCEEEEcCCCCc----------CHHHHHHHH
Confidence 999999999999999999976432 22333333332211 13689999999998 888899888
Q ss_pred HhhcCc
Q psy1760 396 LKYVPV 401 (793)
Q Consensus 396 ~~~lp~ 401 (793)
.+.+..
T Consensus 364 ~~~~~~ 369 (456)
T 4dcu_A 364 IKASEN 369 (456)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776643
No 51
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.70 E-value=1.6e-17 Score=174.80 Aligned_cols=150 Identities=22% Similarity=0.296 Sum_probs=114.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH-
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE- 289 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e- 289 (793)
.+|+++|++|+|||||+|+|++.. ......+|+|++.....+.+++..++||||||+.++...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~----------------~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~ 65 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN----------------QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANA 65 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS----------------EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC----------------CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccc
Confidence 479999999999999999997652 112334688888888899999999999999999887642
Q ss_pred ---------HHHHh--hccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCC-hhhhHhHHHHHHhhhc
Q psy1760 290 ---------VERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKLC 357 (793)
Q Consensus 290 ---------v~~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~-~~~v~~~i~~~~~~l~ 357 (793)
....+ ..+|++|+|+|+++ ......++..+.+.++|+++|+||+|+...+ .....+++.+.
T Consensus 66 ~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~----- 138 (256)
T 3iby_A 66 EGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESL----- 138 (256)
T ss_dssp ---CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHH-----
T ss_pred cCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHH-----
Confidence 22334 78999999999987 3445566777778899999999999986432 11122222222
Q ss_pred ccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 358 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 358 ~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
+.+|++++||++|. |+++|++.|.+.
T Consensus 139 -----lg~~vi~~SA~~g~----------gi~el~~~i~~~ 164 (256)
T 3iby_A 139 -----LGCSVIPIQAHKNI----------GIPALQQSLLHC 164 (256)
T ss_dssp -----HCSCEEECBGGGTB----------SHHHHHHHHHTC
T ss_pred -----cCCCEEEEECCCCC----------CHHHHHHHHHhh
Confidence 24689999999998 999999999776
No 52
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.70 E-value=9.3e-18 Score=178.25 Aligned_cols=154 Identities=23% Similarity=0.337 Sum_probs=116.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH--
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG-- 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~-- 288 (793)
.+|+++|++|+|||||+|+|++.. ......+|+|+......+.+++..++||||||+.+|..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~----------------~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 67 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR----------------QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTIS 67 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC----------------EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC--
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC----------------cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCcccccc
Confidence 479999999999999999997652 12234568888888888999999999999999988762
Q ss_pred ---HH----HH-H--hhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCC-hhhhHhHHHHHHhhhc
Q psy1760 289 ---EV----ER-I--LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKLC 357 (793)
Q Consensus 289 ---ev----~~-~--l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~-~~~v~~~i~~~~~~l~ 357 (793)
.. .+ . ...+|++|+|+|+++ ......++..+.+.++|+++|+||+|+...+ .....+++.+
T Consensus 68 ~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~------ 139 (274)
T 3i8s_A 68 SQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSA------ 139 (274)
T ss_dssp --CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHH------
T ss_pred ccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHH------
Confidence 11 11 1 368999999999987 3455566777788899999999999986432 1111222222
Q ss_pred ccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 358 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 358 ~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
.+.+|++++||++|. |+++|+++|.+.++..
T Consensus 140 ----~lg~~~i~~SA~~g~----------gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 140 ----RLGCPVIPLVSTRGR----------GIEALKLAIDRYKANE 170 (274)
T ss_dssp ----HHTSCEEECCCGGGH----------HHHHHHHHHHTCCCCC
T ss_pred ----hcCCCEEEEEcCCCC----------CHHHHHHHHHHHHhcC
Confidence 124789999999998 9999999998887653
No 53
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.69 E-value=1.4e-16 Score=180.40 Aligned_cols=153 Identities=24% Similarity=0.325 Sum_probs=113.4
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccc-----
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF----- 286 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df----- 286 (793)
.|+|+|.+|+|||||+|+|++... ..++...|+|++.....+.|++..+.+|||||+..+
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~---------------~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~ 67 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKK---------------AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDII 67 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-----------------------------CCSEEEEEETTEEEEEEECTTTTSSGGGCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---------------ceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchH
Confidence 689999999999999999986521 223456799999999999999999999999997642
Q ss_pred ----hHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHH-HHHHhhhccccc
Q psy1760 287 ----GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDAT-FDLFDKLCATEE 361 (793)
Q Consensus 287 ----~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i-~~~~~~l~~~~~ 361 (793)
...+..+++.||++|+|+|+.++.......+.+.+...++|+++|+||+|+... ...++ .++ ..+
T Consensus 68 ~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~----~~~~~~~~~-~~l----- 137 (439)
T 1mky_A 68 SQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE----FEREVKPEL-YSL----- 137 (439)
T ss_dssp CHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH----HHHHTHHHH-GGG-----
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc----cHHHHHHHH-Hhc-----
Confidence 344566789999999999999998887777777777789999999999997531 11222 222 122
Q ss_pred ccCc-cEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 362 QLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 362 ~l~~-Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
.+ +++++||++|. |+.+|++.|.+.+|.
T Consensus 138 --g~~~~~~iSA~~g~----------gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 138 --GFGEPIPVSAEHNI----------NLDTMLETIIKKLEE 166 (439)
T ss_dssp --SSCSCEECBTTTTB----------SHHHHHHHHHHHHHH
T ss_pred --CCCCEEEEeccCCC----------CHHHHHHHHHHhccc
Confidence 23 57999999998 999999999988874
No 54
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.68 E-value=8.5e-17 Score=160.18 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=107.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCc-------
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH------- 283 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh------- 283 (793)
.+|+++|++|+|||||+++|++.... .......|.|...... .+ +..+.+|||||+
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~t~~~~~~--~~-~~~~~l~Dt~G~~~~~~~~ 86 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRKNL--------------ARTSSKPGKTQTLNFY--II-NDELHFVDVPGYGFAKVSK 86 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEEE--EE-TTTEEEEECCCBCCCSSCH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc--------------cccCCCCCceeeEEEE--EE-CCcEEEEECCCCCccccCH
Confidence 58999999999999999999865211 1112223444433322 22 347999999994
Q ss_pred ---ccchHHHHHHhhcc---CcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCC-hhhhHhHHHHHHhhh
Q psy1760 284 ---ADFGGEVERILSMV---DNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKL 356 (793)
Q Consensus 284 ---~df~~ev~~~l~~a---D~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~-~~~v~~~i~~~~~~l 356 (793)
..|...+...++.+ |++++|+|++++...+...+++.+...+.|+++|+||+|+...+ .....+++.+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~--- 163 (195)
T 1svi_A 87 SEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTL--- 163 (195)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHH---
Confidence 44444455556655 99999999999887777777788888899999999999997642 222233333332
Q ss_pred cccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 357 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 357 ~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
.. ....+++++||++|. |++++++.|.+.++
T Consensus 164 ~~---~~~~~~~~~Sa~~~~----------gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 164 NI---DPEDELILFSSETKK----------GKDEAWGAIKKMIN 194 (195)
T ss_dssp TC---CTTSEEEECCTTTCT----------THHHHHHHHHHHHT
T ss_pred cc---cCCCceEEEEccCCC----------CHHHHHHHHHHHhc
Confidence 21 124689999999998 99999999987664
No 55
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.68 E-value=5.2e-17 Score=183.76 Aligned_cols=153 Identities=22% Similarity=0.342 Sum_probs=109.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcc------
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA------ 284 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~------ 284 (793)
..|+|+|++|+|||||+|+|++.. ....+...|+|++.....+.|++..+.+|||||+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~---------------~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~ 68 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGER---------------ISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPF 68 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEE---------------CC-----------CEEEECTTCSSCCEEEC---------CH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---------------ceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhH
Confidence 479999999999999999998652 12345567899998888999999999999999985
Q ss_pred --cchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccc
Q psy1760 285 --DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 285 --df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~ 362 (793)
.+...+..+++.||++|+|+|+.++.......+.+.+...++|+++|+||+|+...+. ++.+++ .+
T Consensus 69 ~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~-----~~~~~~-~l------ 136 (436)
T 2hjg_A 69 LAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA-----NIYDFY-SL------ 136 (436)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC----------CCCSSG-GG------
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh-----hHHHHH-Hc------
Confidence 4556667789999999999999999988888888888888999999999999865321 111111 11
Q ss_pred cCc-cEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 363 LDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 363 l~~-Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
.+ +++++||++|. |+.+|+++|.+.+|.
T Consensus 137 -g~~~~~~iSA~~g~----------gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 137 -GFGEPYPISGTHGL----------GLGDLLDAVAEHFKN 165 (436)
T ss_dssp -SSCCCEECBTTTTB----------THHHHHHHHHHTGGG
T ss_pred -CCCCeEEEeCcCCC----------ChHHHHHHHHHhcCc
Confidence 22 57999999998 999999999998874
No 56
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.68 E-value=8e-17 Score=158.35 Aligned_cols=151 Identities=21% Similarity=0.217 Sum_probs=108.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
..|+++|.+|+|||||+++|.+.... ......|+|++.....+.+++..+.+|||||+.++....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 69 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAA---------------IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 69 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCS---------------CCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcc---------------eeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHH
Confidence 47899999999999999999865211 112234566665566778888899999999987653222
Q ss_pred --------HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHc---CCccEEEEecccCCCCChhhhHhHHHHHHhhhccc
Q psy1760 291 --------ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 359 (793)
Q Consensus 291 --------~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~---~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~ 359 (793)
...++.+|++++|+|+++........++..+... ++|+|+|+||+|+.+.... ..
T Consensus 70 ~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~------------~~-- 135 (172)
T 2gj8_A 70 ERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG------------MS-- 135 (172)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE------------EE--
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhh------------hh--
Confidence 2357889999999999887655555555555443 6899999999998543211 00
Q ss_pred ccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 360 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 360 ~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
.....+++++||++|. |++++++.|.+.+..
T Consensus 136 -~~~~~~~~~~SA~~g~----------gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 136 -EVNGHALIRLSARTGE----------GVDVLRNHLKQSMGF 166 (172)
T ss_dssp -EETTEEEEECCTTTCT----------THHHHHHHHHHHC--
T ss_pred -hccCCceEEEeCCCCC----------CHHHHHHHHHHHhhh
Confidence 1124579999999998 999999999887754
No 57
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.2e-16 Score=158.55 Aligned_cols=160 Identities=18% Similarity=0.183 Sum_probs=108.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+..... . ... |+......+.+++..+.+|||||+.+|....
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~~~~--~-------------~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 77 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMNEVV--H-------------TSP----TIGSNVEEIVINNTRFLMWDIGGQESLRSSW 77 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCE--E-------------EEC----CSCSSCEEEEETTEEEEEEECCC----CGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--c-------------CcC----CCccceEEEEECCEEEEEEECCCCHhHHHHH
Confidence 48999999999999999999854211 0 000 1222234566788999999999999998888
Q ss_pred HHHhhccCcEEEEEeCCCCCCc-hhHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
...++.+|++|+|+|+++.... ....++..+.. .+.|+++|+||+|+..... .+++.+.+..... ....+
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~--~~~~~ 152 (187)
T 1zj6_A 78 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT---VAEISQFLKLTSI--KDHQW 152 (187)
T ss_dssp HHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTGGGC--CSSCE
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCC---HHHHHHHhChhhh--cCCCc
Confidence 8899999999999999886432 22334444433 4789999999999975421 2233333321111 12346
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcC
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD 404 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~ 404 (793)
+++++||++|. |+++++++|.+.++.+..
T Consensus 153 ~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 153 HIQACCALTGE----------GLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp EEEECBTTTTB----------THHHHHHHHHHHHCC---
T ss_pred EEEEccCCCCc----------CHHHHHHHHHHHHHHHhh
Confidence 89999999998 999999999998876543
No 58
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=9.9e-17 Score=160.08 Aligned_cols=161 Identities=17% Similarity=0.212 Sum_probs=114.4
Q ss_pred ccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH
Q psy1760 210 DKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 289 (793)
Q Consensus 210 e~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 289 (793)
..+|+++|.+|+|||||+++|+..... .......|.+.......+......+.||||||+.+|...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 88 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFD--------------HNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSL 88 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCC--------------TTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGG
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCC--------------CCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhh
Confidence 358999999999999999999865311 011223355555444444445678999999999999999
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHHc---CCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~~---~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
....++.+|++|+|+|+++....+. ..++..+... ++|+++|+||+|+...+ ....+++.++... ..+
T Consensus 89 ~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~-~v~~~~~~~~~~~-------~~~ 160 (192)
T 2fg5_A 89 APMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIR-EVPLKDAKEYAES-------IGA 160 (192)
T ss_dssp THHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC-CSCHHHHHHHHHT-------TTC
T ss_pred hHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc-ccCHHHHHHHHHH-------cCC
Confidence 9999999999999999987533222 2334444443 78999999999996422 1122344444332 246
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
|++++||++|. |++++++.|.+.++..
T Consensus 161 ~~~~~Sa~~~~----------gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 161 IVVETSAKNAI----------NIEELFQGISRQIPPL 187 (192)
T ss_dssp EEEECBTTTTB----------SHHHHHHHHHHTCC--
T ss_pred EEEEEeCCCCc----------CHHHHHHHHHHHHHhh
Confidence 89999999998 9999999999888654
No 59
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.68 E-value=1.2e-16 Score=156.84 Aligned_cols=160 Identities=16% Similarity=0.192 Sum_probs=109.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+....... .....|.+.......+......+.||||||+.+|....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 78 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEF--------------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA 78 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTT--------------SCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGT
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCc--------------CCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhh
Confidence 5899999999999999999986521110 01111222222222222234689999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCC-chhHHHHHHHHHc---CCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~~---~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
...++.+|++|+|+|+++... .....++..+... ++|+++|+||+|+...+. ...+++.++... ..+|
T Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~-~~~~~~~~~~~~-------~~~~ 150 (181)
T 2efe_B 79 PMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARK-VTAEDAQTYAQE-------NGLF 150 (181)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC-SCHHHHHHHHHH-------TTCE
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccccc-CCHHHHHHHHHH-------cCCE
Confidence 999999999999999987533 2223344444443 678999999999965431 122333433322 2467
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
++++||++|. |++++++.|.+.++..
T Consensus 151 ~~~~Sa~~g~----------gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 151 FMETSAKTAT----------NVKEIFYEIARRLPRV 176 (181)
T ss_dssp EEECCSSSCT----------THHHHHHHHHHTCC--
T ss_pred EEEEECCCCC----------CHHHHHHHHHHHHHhc
Confidence 9999999998 9999999999888654
No 60
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.68 E-value=1.3e-16 Score=154.37 Aligned_cols=158 Identities=16% Similarity=0.180 Sum_probs=110.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+...... ......|.+.......+...+..+++|||||+.+|....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 72 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHE--------------FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCT--------------TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhh
Confidence 489999999999999999998642110 011223444444444444446789999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHHc---CCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~~---~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
...++.+|++|+|+|+++....+ ...++..+... ++|+++|.||+|+...+. ...++..++... ..+|
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~~~ 144 (170)
T 1r2q_A 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRA-VDFQEAQSYADD-------NSLL 144 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC-SCHHHHHHHHHH-------TTCE
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccc-cCHHHHHHHHHH-------cCCe
Confidence 99999999999999998753222 22333444432 678889999999865321 112233333222 2467
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
++++||++|. |++++++.|.+.++
T Consensus 145 ~~~~Sa~~g~----------gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 145 FMETSAKTSM----------NVNEIFMAIAKKLP 168 (170)
T ss_dssp EEECCTTTCT----------THHHHHHHHHHTSC
T ss_pred EEEEeCCCCC----------CHHHHHHHHHHHHh
Confidence 9999999998 99999999988775
No 61
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.68 E-value=1.3e-16 Score=158.20 Aligned_cols=156 Identities=19% Similarity=0.279 Sum_probs=110.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCc-------
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH------- 283 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh------- 283 (793)
.+|+++|++|+|||||+++|++.... ......|+|..... ...+..+.+|||||+
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~~~---------------~~~~~~~~t~~~~~---~~~~~~~~i~Dt~G~~~~~~~~ 85 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRKIA---------------FVSKTPGKTRSINF---YLVNSKYYFVDLPGYGYAKVSK 85 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSCCS---------------CCCSSCCCCCCEEE---EEETTTEEEEECCCBSSSCCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCccc---------------cccCCCCCccCeEE---EEECCcEEEEECCCCccccCCh
Confidence 48999999999999999999876311 11122333433222 222457899999993
Q ss_pred ---ccchHHHHHHhhc---cCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCC-hhhhHhHHHHHHhhh
Q psy1760 284 ---ADFGGEVERILSM---VDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKL 356 (793)
Q Consensus 284 ---~df~~ev~~~l~~---aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~-~~~v~~~i~~~~~~l 356 (793)
..|...+...++. +|++++|+|+..+.......+++.+...++|+++|+||+|+.... .....+++.+.+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~ 165 (195)
T 3pqc_A 86 KERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY 165 (195)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc
Confidence 3344444444444 499999999998888877888888888899999999999997532 333344444443322
Q ss_pred cccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 357 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 357 ~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
+ .++++++||++|. |+++++++|.+.++
T Consensus 166 ~------~~~~~~~Sa~~~~----------gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 166 G------EYTIIPTSSVTGE----------GISELLDLISTLLK 193 (195)
T ss_dssp C------CSCEEECCTTTCT----------THHHHHHHHHHHHC
T ss_pred C------CCceEEEecCCCC----------CHHHHHHHHHHHhh
Confidence 1 3689999999998 99999999988775
No 62
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.67 E-value=9.4e-17 Score=159.51 Aligned_cols=166 Identities=19% Similarity=0.197 Sum_probs=109.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeee-EEeecCeEEEEecCCCcccchHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNC-SIEYNGTRINIIDTPGHADFGGE 289 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~-~~~~~~~~i~iiDTPGh~df~~e 289 (793)
.+|+++|++|+|||||++.|.+........ . ............|.+...... .+......++||||||+.+|...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~~~~~-~---~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKG-E---MVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCGGGBC-C---CEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred cEEEEECCCCCCHHHHHHHHHhhccccccc-c---ccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 589999999999999997775432111000 0 000000011111222222111 23334568999999999999999
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHH---------cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccc
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK---------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 360 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~---------~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~ 360 (793)
....++.+|++|+|+|++++...+....+..+.. .++|+++|+||+|+... ...+++.+++..
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~----- 162 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA---LPVEMVRAVVDP----- 162 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC---CCHHHHHHHHCT-----
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc---cCHHHHHHHHHh-----
Confidence 9999999999999999997655554444433322 47899999999999764 223344444432
Q ss_pred cccCc-cEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 361 EQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 361 ~~l~~-Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
..+ +++.+||++|. |++++++.|.+.+.
T Consensus 163 --~~~~~~~~~Sa~~~~----------gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 163 --EGKFPVLEAVATEGK----------GVFETLKEVSRLVL 191 (198)
T ss_dssp --TCCSCEEECBGGGTB----------THHHHHHHHHHHHH
T ss_pred --cCCceEEEEecCCCc----------CHHHHHHHHHHHHH
Confidence 234 79999999998 99999999877653
No 63
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.67 E-value=1.3e-16 Score=159.16 Aligned_cols=161 Identities=17% Similarity=0.236 Sum_probs=112.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+........ .....| .....+.+.+..++||||||+.+|...+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~-------------~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 80 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKH-------------ITATVG----YNVETFEKGRVAFTVFDMGGAKKFRGLW 80 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC----C-------------CCCCSS----EEEEEEEETTEEEEEEEECCSGGGGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCcccc-------------cccccc----eeEEEEEeCCEEEEEEECCCCHhHHHHH
Confidence 58999999999999999999865321100 011122 2234456889999999999999999888
Q ss_pred HHHhhccCcEEEEEeCCCCCCc-hhHHHHHHHHHc-----------CCccEEEEecccCCCCChhhhHhHHHHHHhhhcc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALKL-----------GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA 358 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~~-----------~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~ 358 (793)
...++.+|++|+|+|+++.... ....++..+... ++|+|+|+||+|+..... .+++.+.+.....
T Consensus 81 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~ 157 (199)
T 4bas_A 81 ETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT---AAELVEILDLTTL 157 (199)
T ss_dssp GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC---HHHHHHHHTHHHH
T ss_pred HHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC---HHHHHHHhcchhh
Confidence 8889999999999999975422 223444444433 889999999999976532 2222222211110
Q ss_pred cccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 359 TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 359 ~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
.....++++.+||++|. |++++++.|.+.+...
T Consensus 158 -~~~~~~~~~~~Sa~~g~----------gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 158 -MGDHPFVIFASNGLKGT----------GVHEGFSWLQETASRQ 190 (199)
T ss_dssp -HTTSCEEEEECBTTTTB----------THHHHHHHHHHHHHHH
T ss_pred -ccCCeeEEEEeeCCCcc----------CHHHHHHHHHHHHHHH
Confidence 01235789999999998 9999999998877543
No 64
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.67 E-value=4.6e-16 Score=150.09 Aligned_cols=155 Identities=16% Similarity=0.132 Sum_probs=108.1
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+|+++|++|+|||||+++|+...... . .. |+......+.+++..+++|||||+.+|.....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~------------~---~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 62 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVT------------T---IP----TIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 62 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC------------C---CC----CSSCCEEEEECSSCEEEEEECCCCGGGHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCc------------c---cC----cCceeEEEEEECCEEEEEEEcCCChhhHHHHH
Confidence 68999999999999999998652110 0 00 11122345667889999999999999988888
Q ss_pred HHhhccCcEEEEEeCCCCCCch-hHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
..++.+|++++|+|+++..... ...++..... .+.|+++|+||+|+..... .+++.+.+..... ....+|
T Consensus 63 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~--~~~~~~ 137 (164)
T 1r8s_A 63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL--RHRNWY 137 (164)
T ss_dssp HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGGC--SSCCEE
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC---HHHHHHHhCcccc--cCccEE
Confidence 8999999999999998752222 2223333332 3789999999999976421 1223322221111 123568
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
++.+||++|. |++++++.|.+.++
T Consensus 138 ~~~~Sa~~~~----------gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 138 IQATCATSGD----------GLYEGLDWLSNQLR 161 (164)
T ss_dssp EEECBTTTTB----------THHHHHHHHHHHC-
T ss_pred EEEcccCCCc----------CHHHHHHHHHHHHh
Confidence 9999999998 99999999988774
No 65
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.67 E-value=1.6e-16 Score=154.28 Aligned_cols=156 Identities=17% Similarity=0.137 Sum_probs=110.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+..... . ... |+......+.+++..+.+|||||+.+|...+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~~~--~-------------~~~----t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~ 68 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGEVV--T-------------TIP----TIGFNVETVTYKNLKFQVWDLGGLTSIRPYW 68 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC--C-------------CCC----CSSEEEEEEEETTEEEEEEEECCCGGGGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--C-------------cCC----cCccceEEEEECCEEEEEEECCCChhhhHHH
Confidence 48999999999999999999764211 0 001 1222334567779999999999999998888
Q ss_pred HHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
...++.+|++++|+|+++..... ....+..... .+.|+++|+||+|+..... .+++.+.+..... ....+
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~--~~~~~ 143 (171)
T 1upt_A 69 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT---SSEMANSLGLPAL--KDRKW 143 (171)
T ss_dssp GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTGGGC--TTSCE
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC---HHHHHHHhCchhc--cCCce
Confidence 88899999999999998764322 2233333332 4789999999999976532 1223332221111 12356
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
+++++||++|. |++++++.|.+.++
T Consensus 144 ~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 144 QIFKTSATKGT----------GLDEAMEWLVETLK 168 (171)
T ss_dssp EEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred EEEECcCCCCc----------CHHHHHHHHHHHHh
Confidence 89999999998 99999999987764
No 66
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.66 E-value=4.2e-17 Score=171.21 Aligned_cols=164 Identities=15% Similarity=0.092 Sum_probs=114.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|++........ ...++|+......+.|++..++||||||+.++....
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~ 88 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQAFESKL--------------GSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHC 88 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSCCSCCCT--------------TSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcccCC--------------CCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCH
Confidence 589999999999999999998763222110 012256666666788899999999999998874322
Q ss_pred -----------HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHc-----CCccEEEEe-cccCCCCChhhhH-----hH
Q psy1760 291 -----------ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL-----GFKPIVVVN-KIDRSNARPEWVV-----DA 348 (793)
Q Consensus 291 -----------~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~-----~ip~IvvIN-KiD~~~a~~~~v~-----~~ 348 (793)
..+++.+|++|+|+|+.. +..+...+++.+.+. +.|.|+++| |+|+...+....+ ++
T Consensus 89 ~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~ 167 (260)
T 2xtp_A 89 EALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKA 167 (260)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHH
Confidence 225678999999999985 677777777777765 678888888 9999865443322 12
Q ss_pred HHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 349 TFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 349 i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+.+.+..++.... .+..+++||++|. |+++|++.|.+.++.
T Consensus 168 ~~~~~~~~~~~~~--~~~~~~~SA~~~~----------gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 168 LSKLVAACGGRIC--AFNNRAEGSNQDD----------QVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHHHHTTTCEE--ECCTTCCHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCeEE--EecCcccccccHH----------HHHHHHHHHHHHHHh
Confidence 3333333332110 0212778999987 899999999888764
No 67
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.66 E-value=1.6e-16 Score=167.22 Aligned_cols=154 Identities=27% Similarity=0.414 Sum_probs=114.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH--
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG-- 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~-- 288 (793)
.+|+++|++|+|||||+++|++... .....+|+|+......+.+++..+.||||||+.+|..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~----------------~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 69 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQ----------------YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSS 69 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCE----------------EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCC----------------cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCC
Confidence 4799999999999999999976421 1223458888888888999999999999999987754
Q ss_pred ---HH-HHHh--hccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccc
Q psy1760 289 ---EV-ERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 289 ---ev-~~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~ 362 (793)
.+ ...+ ..+|++++|+|+++. .....++..+.+.++|+++|+||+|+...+.. ..+...+...
T Consensus 70 ~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i--~~~~~~l~~~------- 138 (258)
T 3a1s_A 70 IDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTGM--KIDRYELQKH------- 138 (258)
T ss_dssp HHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTC--CBCHHHHHHH-------
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccch--HHHHHHHHHH-------
Confidence 12 2333 479999999999873 34445667777889999999999998543211 1112222212
Q ss_pred cCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 363 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 363 l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+.+|++++||++|. |+++|++.|.+.++.
T Consensus 139 lg~~vi~~SA~~g~----------gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 139 LGIPVVFTSSVTGE----------GLEELKEKIVEYAQK 167 (258)
T ss_dssp HCSCEEECCTTTCT----------THHHHHHHHHHHHHS
T ss_pred cCCCEEEEEeeCCc----------CHHHHHHHHHHHhhc
Confidence 24789999999998 999999999887653
No 68
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.66 E-value=2.2e-16 Score=152.88 Aligned_cols=158 Identities=18% Similarity=0.202 Sum_probs=110.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+...... ......|.+.......+......+.+|||||+.+|....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~ 72 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDP--------------NINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALA 72 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCT--------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGT
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCC--------------CCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhccc
Confidence 589999999999999999998653110 112223445444444443345789999999999999888
Q ss_pred HHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHHc---CCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~~---~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
...++.+|++++|+|+++....+. ..++..+... ++|+++|+||+|+...+. ...++...+... ..+|
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~-v~~~~~~~~~~~-------~~~~ 144 (170)
T 1z0j_A 73 PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVRE-VMERDAKDYADS-------IHAI 144 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCC-SCHHHHHHHHHH-------TTCE
T ss_pred HhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccc-cCHHHHHHHHHH-------cCCE
Confidence 899999999999999987533232 2333444433 567889999999975321 112222222221 2467
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
++++||++|. |++++++.|.+.++
T Consensus 145 ~~~~Sa~~~~----------~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 145 FVETSAKNAI----------NINELFIEISRRIP 168 (170)
T ss_dssp EEECBTTTTB----------SHHHHHHHHHHHCC
T ss_pred EEEEeCCCCc----------CHHHHHHHHHHHHh
Confidence 9999999998 99999999988775
No 69
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.66 E-value=2.4e-16 Score=153.45 Aligned_cols=152 Identities=24% Similarity=0.303 Sum_probs=104.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH--
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG-- 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~-- 288 (793)
.+|+++|++|+|||||+++|.+.... .+..+|+|+......+.+++..+.+|||||+.+|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 67 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVY----------------IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS 67 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSS----------------CC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCee----------------ccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcc
Confidence 47899999999999999999754211 112245666666667778899999999999988752
Q ss_pred ----HHHHHhh--ccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccc
Q psy1760 289 ----EVERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 289 ----ev~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~ 362 (793)
....+++ .+|++++|+|+.+. .+...++..+.+.+.|+++|.||+|+...+. +..+..++...+
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~------ 137 (165)
T 2wji_A 68 IDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLG--IEIDVDKLEKIL------ 137 (165)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHHHTT--CCCCHHHHHHHH------
T ss_pred hhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhccccC--hhhHHHHHHHHh------
Confidence 1223333 79999999999862 2333455566667899999999999864221 101122221111
Q ss_pred cCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 363 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 363 l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.+|++++||++|. |++++++.|.+.+
T Consensus 138 -~~~~~~~SA~~~~----------~v~~l~~~l~~~~ 163 (165)
T 2wji_A 138 -GVKVVPLSAAKKM----------GIEELKKAISIAV 163 (165)
T ss_dssp -TSCEEECBGGGTB----------SHHHHHHHHHHHT
T ss_pred -CCCEEEEEcCCCC----------CHHHHHHHHHHHh
Confidence 3579999999998 9999999998765
No 70
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.66 E-value=3.1e-16 Score=151.62 Aligned_cols=159 Identities=18% Similarity=0.208 Sum_probs=107.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+....... .....|.+.......+......+.+|||||+.+|....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 69 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAEN--------------KEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLA 69 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTT--------------CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCC--------------CCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhh
Confidence 4799999999999999999986532110 11112333333333333234589999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH---cCCccEEEEecccCCCCCh-hhhH-hHHHHHHhhhcccccccC
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARP-EWVV-DATFDLFDKLCATEEQLD 364 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~ip~IvvINKiD~~~a~~-~~v~-~~i~~~~~~l~~~~~~l~ 364 (793)
...++.+|++++|+|+++....+. ..++..+.. .++|+++|+||+|+..... ..+. ++..++... ..
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-------~~ 142 (170)
T 1ek0_A 70 PXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEE-------KG 142 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHH-------HT
T ss_pred hhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHH-------cC
Confidence 999999999999999987532222 223333332 3788899999999965421 1111 222222222 23
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
++++++||++|. |++++++.|.+.++
T Consensus 143 ~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 143 LLFFETSAKTGE----------NVNDVFLGIGEKIP 168 (170)
T ss_dssp CEEEECCTTTCT----------THHHHHHHHHTTSC
T ss_pred CEEEEEeCCCCC----------CHHHHHHHHHHHHh
Confidence 579999999998 99999999988764
No 71
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.66 E-value=1.9e-16 Score=167.68 Aligned_cols=152 Identities=22% Similarity=0.298 Sum_probs=115.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH-
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE- 289 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e- 289 (793)
.+|+++|++|+|||||+++|++... .....+|+|+......+.+++..++||||||+.+|...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 67 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQ----------------HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHS 67 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCE----------------EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc----------------ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCC
Confidence 5899999999999999999976521 22345678888888889999999999999999887652
Q ss_pred -----HHHHh--hccCcEEEEEeCCCCCCchhHHHHHHHHHcC-CccEEEEecccCCCCC-hhhhHhHHHHHHhhhcccc
Q psy1760 290 -----VERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLG-FKPIVVVNKIDRSNAR-PEWVVDATFDLFDKLCATE 360 (793)
Q Consensus 290 -----v~~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~~-ip~IvvINKiD~~~a~-~~~v~~~i~~~~~~l~~~~ 360 (793)
....+ ..+|++++|+|++.+ .+...++..+...+ +|+++|+||+|+...+ .....+++.+.
T Consensus 68 ~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~-------- 137 (271)
T 3k53_A 68 IDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKE-------- 137 (271)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHH--------
T ss_pred HHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHH--------
Confidence 22333 579999999999884 45666777777888 9999999999975321 11112222222
Q ss_pred cccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 361 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 361 ~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
+.+|++++||++|. |+++|++.|.+.+.
T Consensus 138 --lg~~~~~~Sa~~g~----------gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 138 --LGVPVIPTNAKKGE----------GVEELKRMIALMAE 165 (271)
T ss_dssp --HSSCEEECBGGGTB----------THHHHHHHHHHHHH
T ss_pred --cCCcEEEEEeCCCC----------CHHHHHHHHHHHHh
Confidence 24789999999998 99999999987664
No 72
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.66 E-value=1.7e-16 Score=156.71 Aligned_cols=154 Identities=17% Similarity=0.174 Sum_probs=108.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+.... . ......|. ....+.+++..+.||||||+.+|....
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~~--~-------------~~~~t~~~----~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 82 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNEV--V-------------HTSPTIGS----NVEEIVINNTRFLMWDIGGQESLRSSW 82 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTSC--E-------------EEECCSSS----SCEEEEETTEEEEEEEESSSGGGTCGG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--C-------------ccCCcCce----eeEEEEECCEEEEEEECCCCHhHHHHH
Confidence 5899999999999999999986521 0 00111122 224566788999999999999998888
Q ss_pred HHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
...++.+|++|+|+|+++....+ ....+..+.. .++|+++|+||+|+..... .+++.+.+..... ....+
T Consensus 83 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~--~~~~~ 157 (181)
T 2h17_A 83 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT---VAEISQFLKLTSI--KDHQW 157 (181)
T ss_dssp GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGGC--CSSCE
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCC---HHHHHHHhCcccc--cCCce
Confidence 88899999999999998864322 2334444432 5789999999999976421 2233333221111 12356
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
+++++||++|. |++++++.|.+.
T Consensus 158 ~~~~~Sa~~g~----------gi~~l~~~l~~~ 180 (181)
T 2h17_A 158 HIQACCALTGE----------GLCQGLEWMMSR 180 (181)
T ss_dssp EEEECBTTTTB----------THHHHHHHHHTC
T ss_pred EEEEccCCCCc----------CHHHHHHHHHhh
Confidence 89999999998 999999998764
No 73
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.65 E-value=3.2e-16 Score=156.04 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=80.3
Q ss_pred eEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH-cCCccEEEEecccCCCCChhhhHhHHH
Q psy1760 273 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK-LGFKPIVVVNKIDRSNARPEWVVDATF 350 (793)
Q Consensus 273 ~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~-~~ip~IvvINKiD~~~a~~~~v~~~i~ 350 (793)
..+.||||||+.+|.......++.+|++|+|+|++++...+. ..++..+.. .+.|+++|+||+|... .....+++.
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~--~~~~~~~~~ 170 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNK--FQVDILEVQ 170 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC---CCSCHHHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCccc--ccCCHHHHH
Confidence 789999999999999999999999999999999987543333 223333333 5689999999999322 122234444
Q ss_pred HHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 351 DLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 351 ~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
+++... .+|++++||++|. |+++++++|.+.+.
T Consensus 171 ~~~~~~-------~~~~~~~Sa~~~~----------~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 171 KYAQDN-------NLLFIQTSAKTGT----------NIKNIFYMLAEEIY 203 (208)
T ss_dssp HHHHHT-------TCEEEEECTTTCT----------THHHHHHHHHHHHH
T ss_pred HHHHHc-------CCcEEEEecCCCC----------CHHHHHHHHHHHHH
Confidence 444332 4589999999998 99999999877653
No 74
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=2.7e-16 Score=154.06 Aligned_cols=158 Identities=19% Similarity=0.197 Sum_probs=101.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+....... ...+.++.......+.+++ ..+.+|||||+.+|..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~ 75 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAG---------------TFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS 75 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCC---------------CCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCC---------------CcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHH
Confidence 5899999999999999999986532110 1111222222233334444 5889999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.+...++.+|++|+|+|+++....+. ..++..+.. .+.|+++|+||+|+...+. ...++..++.... .
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~-------~ 147 (180)
T 2g6b_A 76 VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERV-VKREDGEKLAKEY-------G 147 (180)
T ss_dssp ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCC-SCHHHHHHHHHHH-------T
T ss_pred HHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccc-cCHHHHHHHHHHc-------C
Confidence 88888999999999999987533222 233333333 5789999999999975431 1122233332222 4
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+|++++||++|. |++++++.|.+.+..
T Consensus 148 ~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 148 LPFMETSAKTGL----------NVDLAFTAIAKELKR 174 (180)
T ss_dssp CCEEECCTTTCT----------THHHHHHHHHHHHHC
T ss_pred CeEEEEeCCCCC----------CHHHHHHHHHHHHHH
Confidence 679999999998 999999999877643
No 75
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.65 E-value=3.6e-16 Score=152.72 Aligned_cols=157 Identities=16% Similarity=0.140 Sum_probs=108.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+....... .....|.+.......+......+.||||||+.+|....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 81 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKKFMAD--------------CPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 81 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSS--------------CTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhH
Confidence 5899999999999999999986532110 01112333333333333334689999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhH-HHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
...++.+|++|+|+|+++....+.. .++..+.. .+.|+++|+||+|+...+. ...+++.++... ..++
T Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~~~ 153 (179)
T 1z0f_A 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRD-VTYEEAKQFAEE-------NGLL 153 (179)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC-SCHHHHHHHHHH-------TTCE
T ss_pred HHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc-cCHHHHHHHHHH-------cCCE
Confidence 9999999999999999875332222 23333332 5788999999999964321 122344444332 2457
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
++++||++|. |++++++.|.+.+
T Consensus 154 ~~~~Sa~~~~----------gi~~l~~~l~~~i 176 (179)
T 1z0f_A 154 FLEASAKTGE----------NVEDAFLEAAKKI 176 (179)
T ss_dssp EEECCTTTCT----------THHHHHHHHHHHH
T ss_pred EEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 9999999998 9999999987765
No 76
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.65 E-value=4.2e-16 Score=155.00 Aligned_cols=158 Identities=15% Similarity=0.128 Sum_probs=109.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+....... .. .|+......+.+++..+.||||||+.+|...+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~----~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 84 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQFNED--------------MI----PTVGFNMRKITKGNVTIKLWDIGGQPRFRSMW 84 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCS--------------CC----CCCSEEEEEEEETTEEEEEEEECCSHHHHTTH
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCCCCc--------------cC----CCCceeEEEEEeCCEEEEEEECCCCHhHHHHH
Confidence 5899999999999999999986522100 00 11222223466789999999999999999889
Q ss_pred HHHhhccCcEEEEEeCCCCCCc-hhHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
...++.+|++|+|+|+++.... .....+..+.. .++|+++|+||+|+..... .+++.+.+..... ....+
T Consensus 85 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~--~~~~~ 159 (188)
T 1zd9_A 85 ERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD---EKELIEKMNLSAI--QDREI 159 (188)
T ss_dssp HHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC---HHHHHHHTTGGGC--CSSCE
T ss_pred HHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCC---HHHHHHHhChhhh--ccCCe
Confidence 9999999999999999874222 22233333332 5789999999999976421 1222222211111 12356
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+++++||++|. |+++++++|.+.+..
T Consensus 160 ~~~~~SA~~g~----------gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 160 CCYSISCKEKD----------NIDITLQWLIQHSKS 185 (188)
T ss_dssp EEEECCTTTCT----------THHHHHHHHHHTCC-
T ss_pred eEEEEECCCCC----------CHHHHHHHHHHHHHh
Confidence 89999999998 999999999887754
No 77
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.65 E-value=1.5e-16 Score=156.70 Aligned_cols=157 Identities=18% Similarity=0.154 Sum_probs=85.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+..... .+..+.++.+.....+.+++ ..++||||||+.+|..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 72 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFN----------------STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 72 (183)
T ss_dssp EEEEEECCCCC--------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC--------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC----------------CCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhh
Confidence 58999999999999999999754211 11122334444445556666 7899999999999887
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCc-hhHHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.....++.+|++|+|+|+++.... ....++..+.. .++|+++|+||+|+...+. ...++..++.... .
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~~~~~-------~ 144 (183)
T 2fu5_C 73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQ-VSKERGEKLALDY-------G 144 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCC-SCHHHHHHHHHHH-------T
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCc-CCHHHHHHHHHHc-------C
Confidence 777788999999999999874321 22233444443 3689999999999975421 1123333333222 3
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+|++++||++|. |++++++.|.+.+..
T Consensus 145 ~~~~~~Sa~~~~----------~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 145 IKFMETSAKANI----------NVENAFFTLARDIKA 171 (183)
T ss_dssp CEEEECCC---C----------CHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCC----------CHHHHHHHHHHHHHH
Confidence 679999999998 999999998876643
No 78
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.65 E-value=4.1e-16 Score=155.13 Aligned_cols=157 Identities=18% Similarity=0.199 Sum_probs=111.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+..... .+..+.++.......+.+++ +.+.||||||+.+|..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 80 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTYT----------------ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 80 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC----------------SCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCT
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCC----------------CCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhh
Confidence 58999999999999999999864211 11223344445555666666 6799999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHHc---CCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~~---~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.....++.+|++|+|+|+++....+. ..++..+... ++|+++|+||+|+...+.. ..++...+... ..
T Consensus 81 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~-------~~ 152 (196)
T 3tkl_A 81 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVV-DYTTAKEFADS-------LG 152 (196)
T ss_dssp THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCS-CHHHHHHHHHH-------TT
T ss_pred hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccccc-CHHHHHHHHHH-------cC
Confidence 99999999999999999987432222 2333334333 7899999999999764321 11222222222 24
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+|++++||++|. |++++++.|.+.+..
T Consensus 153 ~~~~~~Sa~~g~----------gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 153 IPFLETSAKNAT----------NVEQSFMTMAAEIKK 179 (196)
T ss_dssp CCEEEECTTTCT----------THHHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCC----------CHHHHHHHHHHHHHH
Confidence 689999999998 899999988876643
No 79
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.65 E-value=1.2e-16 Score=156.31 Aligned_cols=157 Identities=18% Similarity=0.184 Sum_probs=110.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+..... .+..++++.......+.+++ ..++||||||+.+|..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 73 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNTFS----------------GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRT 73 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC-------------------CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC----------------CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhh
Confidence 58999999999999999999754211 12223445555556666777 7899999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH-HHHHHHHHc--CCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~~--~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
.....++.+|++|+|+|++++...+.. .++..+... ++|+++|+||+|+...+.. ...+...+.... .+
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~-------~~ 145 (181)
T 3tw8_B 74 ITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVV-ETEDAYKFAGQM-------GI 145 (181)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCS-CHHHHHHHHHHH-------TC
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhccc-CHHHHHHHHHHc-------CC
Confidence 888889999999999999875322222 233333332 5788999999998754311 112222222222 35
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
|++++||++|. |++++++.|.+.+..
T Consensus 146 ~~~~~Sa~~~~----------gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 146 QLFETSAKENV----------NVEEMFNCITELVLR 171 (181)
T ss_dssp CEEECBTTTTB----------SHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCC----------CHHHHHHHHHHHHHH
Confidence 79999999998 999999999876644
No 80
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.65 E-value=3.6e-16 Score=150.89 Aligned_cols=157 Identities=14% Similarity=0.160 Sum_probs=104.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+........ ....+... .....+......+.+|||||+.+|....
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~~~--------------~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 68 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKY--------------DPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMR 68 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCSC--------------CCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC--------------CCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 47999999999999999999864211100 00011111 1111222235679999999999999989
Q ss_pred HHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
...++.+|++++|+|+.+....+. ..++..+.. .+.|+++|+||+|+.+.+. ...++..++...+ ..+
T Consensus 69 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~------~~~ 141 (167)
T 1c1y_A 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV-VGKEQGQNLARQW------CNC 141 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC-SCHHHHHHHHHHT------TSC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccccc-CCHHHHHHHHHHc------cCC
Confidence 899999999999999987422111 223333332 4789999999999975321 1123333332222 146
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
|++++||++|. |++++++.|.+.+
T Consensus 142 ~~~~~Sa~~~~----------gi~~l~~~l~~~i 165 (167)
T 1c1y_A 142 AFLESSAKSKI----------NVNEIFYDLVRQI 165 (167)
T ss_dssp EEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred cEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 79999999998 9999999998765
No 81
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.65 E-value=2.2e-16 Score=156.19 Aligned_cols=157 Identities=16% Similarity=0.227 Sum_probs=110.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+... .... ....| .....+.+++..+++|||||+.+|...+
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~--~~~~-------------~~t~~----~~~~~~~~~~~~~~~~Dt~G~~~~~~~~ 79 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED--VDTI-------------SPTLG----FNIKTLEHRGFKLNIWDVGGQKSLRSYW 79 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC--CSSC-------------CCCSS----EEEEEEEETTEEEEEEEECCSHHHHTTG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCcc-------------cccCc----cceEEEEECCEEEEEEECCCCHhHHHHH
Confidence 589999999999999999998653 1100 01112 2234566688999999999999988888
Q ss_pred HHHhhccCcEEEEEeCCCCCCc-hhHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
...++.+|++++|+|+++.... ....++..+.. .+.|+++|+||+|+..... .+++.+.+..... ....+
T Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~--~~~~~ 154 (186)
T 1ksh_A 80 RNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS---CNAIQEALELDSI--RSHHW 154 (186)
T ss_dssp GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGGC--CSSCE
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC---HHHHHHHhChhhc--cCCce
Confidence 8889999999999999875322 22233443332 4789999999999976422 2333333221111 12356
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
|++++||++|. |++++++.|.+.++.
T Consensus 155 ~~~~~Sa~~~~----------gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 155 RIQGCSAVTGE----------DLLPGIDWLLDDISS 180 (186)
T ss_dssp EEEECCTTTCT----------THHHHHHHHHHHHHT
T ss_pred EEEEeeCCCCC----------CHHHHHHHHHHHHHh
Confidence 89999999998 999999999887754
No 82
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.65 E-value=3.6e-16 Score=152.94 Aligned_cols=158 Identities=18% Similarity=0.134 Sum_probs=108.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC---eEEEEecCCCcccch
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG---TRINIIDTPGHADFG 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~---~~i~iiDTPGh~df~ 287 (793)
.+|+++|++|+|||||+++|+...... +..+.++.+.....+.+++ ..+++|||||+..|.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 70 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFGK----------------QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG 70 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTTH----------------HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCCC----------------CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcccc
Confidence 489999999999999999998652110 0011111222334455555 789999999999999
Q ss_pred HHHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH-----cCCc-cEEEEecccCCCCChhhhHhHHHHHHhhhcccc
Q psy1760 288 GEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK-----LGFK-PIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 360 (793)
Q Consensus 288 ~ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~-----~~ip-~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~ 360 (793)
......++.+|++|+|+|+++....+. ..++..+.. .+.| +++|+||+|+...+. ...++..++...
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~-~~~~~~~~~~~~----- 144 (178)
T 2hxs_A 71 KMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT-IKPEKHLRFCQE----- 144 (178)
T ss_dssp TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS-SCHHHHHHHHHH-----
T ss_pred chhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccc-cCHHHHHHHHHH-----
Confidence 889999999999999999987533222 233333333 2566 688999999975321 112233333222
Q ss_pred cccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 361 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 361 ~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
..+|++++||++|. |++++++.|.+.++..
T Consensus 145 --~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 145 --NGFSSHFVSAKTGD----------SVFLCFQKVAAEILGI 174 (178)
T ss_dssp --HTCEEEEECTTTCT----------THHHHHHHHHHHHTTC
T ss_pred --cCCcEEEEeCCCCC----------CHHHHHHHHHHHHHhh
Confidence 24679999999998 9999999998887543
No 83
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.65 E-value=1.2e-15 Score=151.07 Aligned_cols=157 Identities=19% Similarity=0.200 Sum_probs=109.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|..... .......|.+ ...+.+++..+.+|||||+..|...+
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~---------------~~~~~t~g~~----~~~~~~~~~~l~i~Dt~G~~~~~~~~ 77 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDI---------------SHITPTQGFN----IKSVQSQGFKLNVWDIGGQRKIRPYW 77 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCC---------------EEEEEETTEE----EEEEEETTEEEEEEECSSCGGGHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---------------CcccCcCCeE----EEEEEECCEEEEEEECCCCHHHHHHH
Confidence 5899999999999999999975411 0111122332 24566778999999999999999888
Q ss_pred HHHhhccCcEEEEEeCCCCCCch-hHHHHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
...++.+|++++|+|+++....+ ....+..+. ..+.|+++|+||+|+..+.. .+++.+.+..... ....+
T Consensus 78 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~--~~~~~ 152 (181)
T 1fzq_A 78 RSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP---ASEIAEGLNLHTI--RDRVW 152 (181)
T ss_dssp HHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC---HHHHHHHTTGGGC--CSSCE
T ss_pred HHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC---HHHHHHHhCchhc--cCCce
Confidence 88999999999999998753222 223333332 24789999999999976532 2233333221111 12246
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+++++||++|. |+++++++|.+.+..
T Consensus 153 ~~~~~Sa~~g~----------gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 153 QIQSCSALTGE----------GVQDGMNWVCKNVNA 178 (181)
T ss_dssp EEEECCTTTCT----------THHHHHHHHHHTC--
T ss_pred EEEEccCCCCC----------CHHHHHHHHHHHHHh
Confidence 89999999998 999999999887753
No 84
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.64 E-value=6.4e-16 Score=150.99 Aligned_cols=156 Identities=20% Similarity=0.209 Sum_probs=107.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+...... +..+.++.......+.+++ ..+.||||||+.+|..
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 71 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDT----------------QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRS 71 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC--------------------CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhh
Confidence 489999999999999999998652110 1112222333334455555 5899999999999998
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH-HHHHHHHH-------cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK-------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 360 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~-------~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~ 360 (793)
.....++.+|++++|+|+.+....+.. .++..+.. .++|+++|+||+|+.... ...+++.++...
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~--~~~~~~~~~~~~----- 144 (177)
T 1wms_A 72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ--VSTEEAQAWCRD----- 144 (177)
T ss_dssp HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS--SCHHHHHHHHHH-----
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc--cCHHHHHHHHHh-----
Confidence 888889999999999999875332222 22232222 567999999999997321 222333333321
Q ss_pred cccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 361 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 361 ~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
...+|++++||++|. |++++++.|.+.+.
T Consensus 145 -~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 145 -NGDYPYFETSAKDAT----------NVAAAFEEAVRRVL 173 (177)
T ss_dssp -TTCCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred -cCCceEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 124689999999998 99999999987764
No 85
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.64 E-value=5.6e-16 Score=151.30 Aligned_cols=157 Identities=20% Similarity=0.195 Sum_probs=108.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+...... ...+.++++.....+.+++ ..+.||||||+.+|..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~ 78 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDN----------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 78 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCS----------------SCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHH
Confidence 489999999999999999998642211 1112233334444555555 5899999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.+...++.+|++++|+|+++....+ ...++..+.. .++|+++|+||+|+...+. ...++........ .
T Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~-------~ 150 (179)
T 2y8e_A 79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ-VSTEEGERKAKEL-------N 150 (179)
T ss_dssp GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCC-SCHHHHHHHHHHH-------T
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCc-CCHHHHHHHHHHc-------C
Confidence 9999999999999999998642211 2223333332 4788999999999865321 1122223332222 4
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+|++.+||++|. |++++++.|.+.++.
T Consensus 151 ~~~~~~Sa~~~~----------~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 151 VMFIETSAKAGY----------NVKQLFRRVAAALPG 177 (179)
T ss_dssp CEEEEEBTTTTB----------SHHHHHHHHHHTCC-
T ss_pred CeEEEEeCCCCC----------CHHHHHHHHHHHHhh
Confidence 679999999998 999999999887753
No 86
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.64 E-value=3.3e-16 Score=155.76 Aligned_cols=158 Identities=13% Similarity=0.113 Sum_probs=110.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+........ ...|+......+.+++..+.||||||+.+|...+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 84 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQN-----------------ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLW 84 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGGGCCSS-----------------CCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------------cCCccceeEEEEEECCEEEEEEECCCCHHHHHHH
Confidence 48999999999999999999865311100 1112223345667778999999999999998888
Q ss_pred HHHhhccCcEEEEEeCCCCCC-chhHHHHHHHHH------cCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~------~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
...++.+|++|+|+|+++... ......+..+.. .+.|+++|+||+|+..... .+++.+.+..... ...
T Consensus 85 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~--~~~ 159 (190)
T 2h57_A 85 EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVT---SVKVSQLLCLENI--KDK 159 (190)
T ss_dssp GGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCC---HHHHHHHHTGGGC--CSS
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCC---HHHHHHHhChhhc--cCC
Confidence 888999999999999987421 122233333333 4789999999999975421 2333333321110 112
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
.++++.+||++|. |++++++.|.+.+.
T Consensus 160 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 160 PWHICASDAIKGE----------GLQEGVDWLQDQIQ 186 (190)
T ss_dssp CEEEEECBTTTTB----------THHHHHHHHHHHC-
T ss_pred ceEEEEccCCCCc----------CHHHHHHHHHHHHH
Confidence 5689999999998 99999999987764
No 87
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.64 E-value=2.6e-16 Score=151.52 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=103.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+......... ...+ +. ....+.+++ ..+.+|||||+.+|..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------------~~~~-~~--~~~~~~~~~~~~~~~l~D~~G~~~~~~ 66 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYD--------------PTIE-DF--YRKEIEVDSSPSVLEILDTAGTEQFAS 66 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCC--------------TTCC-EE--EEEEEEETTEEEEEEEEECCCTTCCHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCC--------------CCcc-ee--EEEEEEECCEEEEEEEEECCCchhhHH
Confidence 479999999999999999998653211000 0001 11 122333444 5689999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCch-hHHHHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
.....++.+|++++|+|+.+....+ ...++..+. ..+.|+++|+||+|+...+. ...++..++... .
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~-------~ 138 (167)
T 1kao_A 67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESERE-VSSSEGRALAEE-------W 138 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC-SCHHHHHHHHHH-------H
T ss_pred HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccccc-CCHHHHHHHHHH-------h
Confidence 8889999999999999998742211 122232222 24789999999999864321 112222333222 2
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.+|++++||++|. |++++++.|.+.+
T Consensus 139 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 164 (167)
T 1kao_A 139 GCPFMETSAKSKT----------MVDELFAEIVRQM 164 (167)
T ss_dssp TSCEEEECTTCHH----------HHHHHHHHHHHHH
T ss_pred CCCEEEecCCCCc----------CHHHHHHHHHHHH
Confidence 4689999999998 8999999997765
No 88
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.64 E-value=4.3e-16 Score=155.57 Aligned_cols=156 Identities=17% Similarity=0.195 Sum_probs=106.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+...... ...+.++.+.....+.+++ ..+.||||||+.+|..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 90 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFCE----------------ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS 90 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC------------------------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCc----------------CCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHH
Confidence 589999999999999999997542110 0111222233334455555 6789999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH-HHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.....++.+|++|+|+|+++....+.. .++..+.. .+.|+++|+||+|+...+. ...++..++...+ ..
T Consensus 91 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~-v~~~~~~~~~~~~------~~ 163 (192)
T 2il1_A 91 ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDRE-ITRQQGEKFAQQI------TG 163 (192)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC-SCHHHHHHHHHTS------TT
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc-cCHHHHHHHHHhc------CC
Confidence 999999999999999999875433332 22333333 3788999999999965321 1122333332211 14
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
++++.+||++|. |++++++.|.+.+
T Consensus 164 ~~~~~~SA~~g~----------gi~~l~~~l~~~i 188 (192)
T 2il1_A 164 MRFCEASAKDNF----------NVDEIFLKLVDDI 188 (192)
T ss_dssp CEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 679999999998 9999999987765
No 89
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.64 E-value=5.5e-16 Score=155.64 Aligned_cols=158 Identities=20% Similarity=0.159 Sum_probs=108.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+....... .....|++.......+......+.||||||+.+|....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 74 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPA--------------FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTIT 74 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSC--------------CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--------------cCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchH
Confidence 5899999999999999999986532110 01112444433333333345689999999999999888
Q ss_pred HHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
...++.+|++|+|+|+++...... ..++..+.. .+.|+++|+||+|+...+. ...++..++...+ .+|
T Consensus 75 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~-------~~~ 146 (203)
T 1zbd_A 75 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERV-VSSERGRQLADHL-------GFE 146 (203)
T ss_dssp HTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCC-SCHHHHHHHHHHH-------TCE
T ss_pred HHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccc-cCHHHHHHHHHHC-------CCe
Confidence 889999999999999987532222 233344443 3789999999999975421 1122333332222 357
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
++++||++|. |++++++.|.+.+.
T Consensus 147 ~~~~Sa~~~~----------gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 147 FFEASAKDNI----------NVKQTFERLVDVIC 170 (203)
T ss_dssp EEECBTTTTB----------SSHHHHHHHHHHHH
T ss_pred EEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 9999999998 88888888876553
No 90
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.64 E-value=2e-16 Score=157.96 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=109.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|....... . ..|+......+.+++..+++|||||+.+|....
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~~---------------~----~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 84 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLAT---------------L----QPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 84 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCC---------------C----CCCCSCEEEEEEETTEEEEEEECCCSGGGTTSG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCc---------------c----ccCCCCCeEEEEECCEEEEEEECCCCHHHHHHH
Confidence 479999999999999999998652110 0 112222345677888999999999999988877
Q ss_pred HHHhhccCcEEEEEeCCCCCCch-hHHHHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhccc-----c
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT-----E 360 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~-----~ 360 (793)
...++.+|++++|+|+++....+ ....+..+. ..+.|+++|+||+|+.... ..+++.+.+...... .
T Consensus 85 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~ 161 (190)
T 1m2o_B 85 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV---SEAELRSALGLLNTTGSQRIE 161 (190)
T ss_dssp GGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTCSSCCC---CC
T ss_pred HHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCC---CHHHHHHHhCCcccccccccc
Confidence 77889999999999998753222 223333333 2578999999999997632 123444443322100 1
Q ss_pred cccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 361 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 361 ~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
....++++++||++|. |++++++.|.+.+
T Consensus 162 ~~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~l 190 (190)
T 1m2o_B 162 GQRPVEVFMCSVVMRN----------GYLEAFQWLSQYI 190 (190)
T ss_dssp SSCCEEEEECBTTTTB----------SHHHHHHHHHTTC
T ss_pred ccceEEEEEeECCcCC----------CHHHHHHHHHhhC
Confidence 1234689999999998 9999999987653
No 91
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.64 E-value=2.9e-16 Score=157.96 Aligned_cols=157 Identities=17% Similarity=0.206 Sum_probs=104.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|...... . .. .|+......+.+++..+.+|||||+.+|....
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~~--~-------------~~----~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 86 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRLG--Q-------------HV----PTLHPTSEELTIAGMTFTTFDLGGHIQARRVW 86 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-------------------------CCCCCSCEEEEETTEEEEEEEECC----CCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--c-------------cC----CCCCceeEEEEECCEEEEEEECCCcHhhHHHH
Confidence 47999999999999999999754210 0 00 12222335677788999999999999988877
Q ss_pred HHHhhccCcEEEEEeCCCCCCc-hhHHHHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhc--------
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMP-QTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC-------- 357 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~-------- 357 (793)
...++.+|++++|+|+++.... .....+..+. ..++|+++|+||+|+..+. ..+++.+.+....
T Consensus 87 ~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~ 163 (198)
T 1f6b_A 87 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI---SEERLREMFGLYGQTTGKGSV 163 (198)
T ss_dssp GGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC---CHHHHHHHHTCTTTCCCSSCC
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccC---CHHHHHHHhCccccccccccc
Confidence 7889999999999999875322 2223333333 2478999999999997532 2334444443221
Q ss_pred -cc-ccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 358 -AT-EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 358 -~~-~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.. .....++++++||++|. |+++++++|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~SA~~g~----------gv~~l~~~l~~~l 197 (198)
T 1f6b_A 164 SLKELNARPLEVFMCSVLKRQ----------GYGEGFRWMAQYI 197 (198)
T ss_dssp CTTTCCSCCEEEEECBTTTTB----------SHHHHHHHHHTTC
T ss_pred ccccccCceEEEEEEECCCCC----------CHHHHHHHHHHhc
Confidence 00 01134689999999998 9999999997654
No 92
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=7.5e-16 Score=149.21 Aligned_cols=159 Identities=17% Similarity=0.118 Sum_probs=106.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+......... ...+.+.. ...........+.+|||||+.+|....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~--------------~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~ 68 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYI--------------PTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQ 68 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCC--------------CCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------------CCccccEE-EEEEECCEEEEEEEEECCCchhhHHHH
Confidence 479999999999999999998642211000 00111111 111222234678999999999999988
Q ss_pred HHHhhccCcEEEEEeCCCCCC-chhHHHHHHHHH-----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 291 ERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~-----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
...++.+|++++|+|+++... .....++..+.+ .+.|+++|+||+|+...+.. ...+...+... ..
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v-~~~~~~~~~~~-------~~ 140 (172)
T 2erx_A 69 RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREV-QSSEAEALART-------WK 140 (172)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCS-CHHHHHHHHHH-------HT
T ss_pred HHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccccccc-CHHHHHHHHHH-------hC
Confidence 899999999999999986422 222334444443 36899999999998653211 11122222211 24
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
+|++++||++|. |++++++.|.+.+..+
T Consensus 141 ~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 141 CAFMETSAKLNH----------NVKELFQELLNLEKRR 168 (172)
T ss_dssp CEEEECBTTTTB----------SHHHHHHHHHHTCCSS
T ss_pred CeEEEecCCCCc----------CHHHHHHHHHHHHhhh
Confidence 679999999998 9999999999887654
No 93
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.64 E-value=6e-16 Score=175.18 Aligned_cols=199 Identities=23% Similarity=0.239 Sum_probs=129.1
Q ss_pred eEEeccchhHHHHHHHHHhhhhccchHHHHHHhhcccccccccceeeeecccCCcceehhhhhhccCccccccccccccc
Q psy1760 169 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIM 248 (793)
Q Consensus 169 ~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~ 248 (793)
+.+.+..|.-+..|...+.+.+..... .. .....-....+++|+|++|+|||||+++|++..
T Consensus 143 ~~iSA~~g~gv~~L~~~i~~~l~~~~~--~~--~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~-------------- 204 (439)
T 1mky_A 143 IPVSAEHNINLDTMLETIIKKLEEKGL--DL--ESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE-------------- 204 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHTTC--CS--SSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST--------------
T ss_pred EEEeccCCCCHHHHHHHHHHhcccccc--cc--hhccccccCceEEEECCCCCCHHHHHHHHhCCc--------------
Confidence 345666677777777766554421000 00 000000112489999999999999999998652
Q ss_pred cchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH------------HHHHhhccCcEEEEEeCCCCCCchhHH
Q psy1760 249 DSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE------------VERILSMVDNVLLLIDAVEGPMPQTRF 316 (793)
Q Consensus 249 D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e------------v~~~l~~aD~allVVDa~~g~~~qt~~ 316 (793)
........|+|++.....+.++|..+.+|||||+..+... ...++..+|++++|+|+.++...+...
T Consensus 205 -~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~ 283 (439)
T 1mky_A 205 -RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQR 283 (439)
T ss_dssp -TEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHH
T ss_pred -ccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHH
Confidence 1223445688888888889999999999999998543321 245678899999999999988888777
Q ss_pred HHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHh-hhcccccccCccEEEeecCCCCcccccccccCCchhhHHHH
Q psy1760 317 VTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFD-KLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAI 395 (793)
Q Consensus 317 ~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~-~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I 395 (793)
++..+...+.|+++|+||+|+...+. ...+++.+.+. .+.. ....|++++||++|. |++.|++.+
T Consensus 284 i~~~l~~~~~~~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~SA~~g~----------gv~~l~~~i 349 (439)
T 1mky_A 284 MAGLMERRGRASVVVFNKWDLVVHRE-KRYDEFTKLFREKLYF---IDYSPLIFTSADKGW----------NIDRMIDAM 349 (439)
T ss_dssp HHHHHHHTTCEEEEEEECGGGSTTGG-GCHHHHHHHHHHHCGG---GTTSCEEECBTTTTB----------SHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEEECccCCCchh-hHHHHHHHHHHHHhcc---CCCCcEEEEECCCCC----------CHHHHHHHH
Confidence 77888888999999999999975431 11222222221 1111 123689999999998 899999998
Q ss_pred HhhcC
Q psy1760 396 LKYVP 400 (793)
Q Consensus 396 ~~~lp 400 (793)
.+.++
T Consensus 350 ~~~~~ 354 (439)
T 1mky_A 350 NLAYA 354 (439)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 94
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.64 E-value=4.8e-16 Score=153.34 Aligned_cols=157 Identities=18% Similarity=0.161 Sum_probs=109.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+...... .....++.......+.+++ ..+.||||||+.+|..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 74 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKFKD----------------DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 74 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCT----------------TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHH
Confidence 589999999999999999998652211 1112233333344455555 6899999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH-HHHHHHH---HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKAL---KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~---~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.....++.+|++|+|+|+++....+.. .++..+. ..++|+++|+||+|+...+. ...++..++... ..
T Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~ 146 (186)
T 2bme_A 75 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADRE-VTFLEASRFAQE-------NE 146 (186)
T ss_dssp HHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC-SCHHHHHHHHHH-------TT
T ss_pred HHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc-cCHHHHHHHHHH-------cC
Confidence 888899999999999999874332222 2232222 35789999999999964321 112233333222 24
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
++++.+||++|. |++++++.|.+.+..
T Consensus 147 ~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 147 LMFLETSALTGE----------NVEEAFVQCARKILN 173 (186)
T ss_dssp CEEEECCTTTCT----------THHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCC----------CHHHHHHHHHHHHHH
Confidence 689999999998 899999998876643
No 95
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.64 E-value=4.3e-16 Score=151.72 Aligned_cols=155 Identities=17% Similarity=0.197 Sum_probs=98.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCccc--c
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD--F 286 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~d--f 286 (793)
.+|+++|++|+|||||+++|++.... ......|.+..... +.+++ ..+.+|||||+.. +
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~---------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~D~~g~~~~~~ 67 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQER---------------DLHEQLGEDVYERT--LTVDGEDTTLVVVDTWEAEKLDK 67 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC--------------------CCCSSSSEEEEE--EEETTEEEEEEEECCC-------
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCc---------------cccCccccceeEEE--EEECCEEEEEEEEecCCCCccch
Confidence 48999999999999999999865211 11112344443333 33444 5789999999987 4
Q ss_pred hHHHHHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHHc----CCccEEEEecccCCCCChhhhHhHHHHHHhhhccccc
Q psy1760 287 GGEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALKL----GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 361 (793)
Q Consensus 287 ~~ev~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~~----~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~ 361 (793)
.......++.+|++++|+|+++....+ ...++..+... ++|+++|+||+|+...+.. ..++...+...
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v-~~~~~~~~~~~------ 140 (175)
T 2nzj_A 68 SWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREV-SVEEGRACAVV------ 140 (175)
T ss_dssp CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCS-CHHHHHHHHHH------
T ss_pred hhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcccccc-CHHHHHHHHHH------
Confidence 444555678899999999998642211 22334444443 7899999999999754311 11222222211
Q ss_pred ccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 362 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 362 ~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
..+|++++||++|. |++++++.|.+.+.
T Consensus 141 -~~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 141 -FDCKFIETSATLQH----------NVAELFEGVVRQLR 168 (175)
T ss_dssp -HTSEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred -cCCeEEEEecCCCC----------CHHHHHHHHHHHHH
Confidence 24679999999998 99999999987764
No 96
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.63 E-value=4.3e-16 Score=157.33 Aligned_cols=156 Identities=19% Similarity=0.187 Sum_probs=108.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+...... +....++.......+.+++ ..+.||||||+.+|..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 84 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDKFNP----------------SFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT 84 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCC----------------SSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc----------------ccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH
Confidence 589999999999999999998652111 1112223333344556666 6899999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.+...++.+|++|+|+|+.+....+. ..++..+.. .++|+++|+||+|+.... ...++..++...+ .
T Consensus 85 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~-------~ 155 (213)
T 3cph_A 85 ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV--VTADQGEALAKEL-------G 155 (213)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCC--SCHHHHHHHHHHH-------T
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc--cCHHHHHHHHHHc-------C
Confidence 88889999999999999987432222 233444433 368999999999994322 1222333332222 3
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+|++++||++|. |+++++++|.+.++.
T Consensus 156 ~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 156 IPFIESSAKNDD----------NVNEIFFTLAKLIQE 182 (213)
T ss_dssp CCEEECBTTTTB----------SSHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCC----------CHHHHHHHHHHHHHH
Confidence 579999999998 899999998876643
No 97
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.63 E-value=6.4e-16 Score=148.88 Aligned_cols=154 Identities=16% Similarity=0.194 Sum_probs=101.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+......... ...+.+ ....+.+++ ..+.||||||+.+|..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--------------~t~~~~---~~~~~~~~~~~~~~~l~D~~G~~~~~~ 67 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYE--------------PTKADS---YRKKVVLDGEEVQIDILDTAGQEDYAA 67 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCC--------------TTCCEE---EEEEEEETTEEEEEEEEECCC---CHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCccCCCCC--------------CCcceE---EEEEEEECCEEEEEEEEECCCcchhHH
Confidence 489999999999999999998653111000 001111 112233444 5789999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
.....++.+|++++|+|+.+...... ..++..+.. .++|+++|+||+|+...+. ...++..+.....
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~------- 139 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ-VSVEEAKNRADQW------- 139 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC-SCHHHHHHHHHHH-------
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCc-cCHHHHHHHHHHc-------
Confidence 99999999999999999986422111 222233322 3789999999999975321 1123333333222
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.+|++++||++|. |++++++.|.+.+
T Consensus 140 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~i 165 (168)
T 1u8z_A 140 NVNYVETSAKTRA----------NVDKVFFDLMREI 165 (168)
T ss_dssp TCEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred CCeEEEeCCCCCC----------CHHHHHHHHHHHH
Confidence 3579999999998 9999999997765
No 98
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.63 E-value=1.4e-15 Score=152.10 Aligned_cols=156 Identities=19% Similarity=0.148 Sum_probs=105.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+..... + .. -|+......+.+++..++||||||+.+|....
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~~~~------------~---~~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 90 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLGEIV------------T---TI----PTIGFNVETVEYKNICFTVWDVGGQDKIRPLW 90 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSSCCE------------E---EE----EETTEEEEEEEETTEEEEEEECC-----CTTH
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCcc------------c---cC----CcCceeEEEEEECCEEEEEEECCCCHhHHHHH
Confidence 48999999999999999999754210 0 01 12223334567789999999999999998888
Q ss_pred HHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
...++.+|++|+|+|+++....+ ....+..+.. .+.|+++|+||+|+..... .+++.+.+..... ....+
T Consensus 91 ~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~--~~~~~ 165 (192)
T 2b6h_A 91 RHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP---VSELTDKLGLQHL--RSRTW 165 (192)
T ss_dssp HHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGGC--SSCCE
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC---HHHHHHHhCcccc--cCCce
Confidence 88999999999999998753222 2233333332 3789999999999976421 2233332221111 12356
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
|++++||++|. |++++++.|.+.+.
T Consensus 166 ~~~~~SA~~g~----------gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 166 YVQATCATQGT----------GLYDGLDWLSHELS 190 (192)
T ss_dssp EEEECBTTTTB----------THHHHHHHHHHHTT
T ss_pred EEEECcCCCcC----------CHHHHHHHHHHHHh
Confidence 89999999998 99999999987764
No 99
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.63 E-value=8.1e-16 Score=151.72 Aligned_cols=155 Identities=15% Similarity=0.151 Sum_probs=102.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+........ .+++.......+.+++ ..+.||||||+.+|..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 67 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFVDEY-----------------DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA 67 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCCCC-----------------CTTCCEEEEEEEEETTEEEEEEEEECCCC---CT
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCCC-----------------CCCchheEEEEEEECCcEEEEEEEECCCcHHHHH
Confidence 48999999999999999999865321110 1111112223334444 4578899999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
.....++.+|++++|+|+.+....+. ..++..+.. .+.|+++|+||+|+..... ..++..++...+
T Consensus 68 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~--~~~~~~~~~~~~------- 138 (189)
T 4dsu_A 68 MRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTV--DTKQAQDLARSY------- 138 (189)
T ss_dssp THHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSS--CHHHHHHHHHHH-------
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCccccc--CHHHHHHHHHHc-------
Confidence 99999999999999999987422222 223333332 4789999999999975321 122223322222
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
.+|++++||++|. |++++++.|.+.+..
T Consensus 139 ~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 139 GIPFIETSAKTRQ----------GVDDAFYTLVREIRK 166 (189)
T ss_dssp TCCEEECCTTTCT----------THHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCC----------CHHHHHHHHHHHHHH
Confidence 4679999999998 999999999877643
No 100
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.63 E-value=2.9e-16 Score=155.95 Aligned_cols=158 Identities=20% Similarity=0.174 Sum_probs=110.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+....... .....|++.......+......++||||||+.+|....
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 88 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFTPA--------------FVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTIT 88 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCS--------------CCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--------------cCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhH
Confidence 5899999999999999999986532110 01122444443333444445789999999999998888
Q ss_pred HHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHHc---CCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~~---~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
...++.+|++|+|+|+++....+ ...++..+... +.|+++|+||+|+...+. ...++..++...+ .++
T Consensus 89 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~-------~~~ 160 (189)
T 2gf9_A 89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERV-VPAEDGRRLADDL-------GFE 160 (189)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC-SCHHHHHHHHHHH-------TCE
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccC-CCHHHHHHHHHHc-------CCe
Confidence 88899999999999998743222 23344444443 789999999999965321 1122333333222 357
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
++++||++|. |++++++.|.+.++
T Consensus 161 ~~~~Sa~~g~----------gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 161 FFEASAKENI----------NVKQVFERLVDVIC 184 (189)
T ss_dssp EEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred EEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 9999999998 99999999987764
No 101
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.63 E-value=2.9e-16 Score=160.25 Aligned_cols=157 Identities=15% Similarity=0.197 Sum_probs=113.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+.... ........|++.......+...+..++||||||+..|....
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 81 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEF--------------EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 81 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHH--------------TCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--------------CCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHH
Confidence 5899999999999999999764311 01122334667766666666667899999999999998888
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhH-HHHHHHHHc--CCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccE
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~~--~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pv 367 (793)
...++.+|++|+|+|+++....+.. .++..+... ++|+++|+||+|+.+..... +...+.. ...+++
T Consensus 82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~---~~~~~~~-------~~~~~~ 151 (221)
T 3gj0_A 82 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA---KSIVFHR-------KKNLQY 151 (221)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCG---GGCCHHH-------HHTCEE
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccH---HHHHHHH-------HcCCEE
Confidence 8899999999999999975433332 233333332 78999999999997654222 1111111 124679
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+.+||++|. |++++++.|.+.+..
T Consensus 152 ~~~Sa~~~~----------gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 152 YDISAKSNY----------NFEKPFLWLARKLIG 175 (221)
T ss_dssp EECBGGGTB----------TTTHHHHHHHHHHHT
T ss_pred EEEeCCCCC----------CHHHHHHHHHHHHHh
Confidence 999999998 999999999887643
No 102
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.63 E-value=3.4e-16 Score=153.29 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=96.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec---CeEEEEecCCCcccch
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---GTRINIIDTPGHADFG 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~---~~~i~iiDTPGh~df~ 287 (793)
.+|+++|++|+|||||+++|+...... ...+.++.+.....+.++ ...+.||||||+.+|.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 72 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDKYSQ----------------QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ 72 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCT----------------TC---CCCSCEEEEECCSSSCCEEEEEECCC------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcCCc----------------ccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh
Confidence 489999999999999999998652111 001111222223344444 4689999999999998
Q ss_pred HHHHHHhhccCcEEEEEeCCCCCCchhH-HHHHHHHH-------cCCccEEEEecccCCCCChhhhHhHHHHHHhhhccc
Q psy1760 288 GEVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK-------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 359 (793)
Q Consensus 288 ~ev~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~-------~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~ 359 (793)
......++.+|++|+|+|+++....+.. .++..+.. .++|+++|+||+|+.........++..++...
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~---- 148 (182)
T 1ky3_A 73 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS---- 148 (182)
T ss_dssp ----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH----
T ss_pred hhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh----
Confidence 8888889999999999999875332222 22222222 57899999999999543211112333333221
Q ss_pred ccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 360 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 360 ~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
....|++++||++|. |++++++.|.+.+
T Consensus 149 --~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 149 --LGDIPLFLTSAKNAI----------NVDTAFEEIARSA 176 (182)
T ss_dssp --TTSCCEEEEBTTTTB----------SHHHHHHHHHHHH
T ss_pred --cCCCeEEEEecCCCC----------CHHHHHHHHHHHH
Confidence 124689999999998 9999999987765
No 103
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.63 E-value=3.8e-16 Score=158.62 Aligned_cols=168 Identities=18% Similarity=0.151 Sum_probs=108.0
Q ss_pred HHhhcccccccccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec-------
Q psy1760 199 LRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN------- 271 (793)
Q Consensus 199 LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~------- 271 (793)
+++...+.+....+|+++|++|+|||||+++|+...... +....++.......+.++
T Consensus 14 ~~~~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~ 77 (217)
T 2f7s_A 14 LVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNP----------------KFITTVGIDFREKRVVYNAQGPNGS 77 (217)
T ss_dssp -------CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCC----------------EEEEEEEEEEEEEEEEEEC------
T ss_pred cCcCcCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCc----------------CCCCceeEEEEEEEEEECCcccccc
Confidence 334444455555689999999999999999998642110 011112222222233333
Q ss_pred -----CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHH-HHHHHHH----cCCccEEEEecccCCCCC
Q psy1760 272 -----GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRF-VTRKALK----LGFKPIVVVNKIDRSNAR 341 (793)
Q Consensus 272 -----~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~-~l~~~~~----~~ip~IvvINKiD~~~a~ 341 (793)
...++||||||+.+|...+...++.+|++|+|+|+++....+... ++..+.. .++|+++|+||+|+...+
T Consensus 78 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~ 157 (217)
T 2f7s_A 78 SGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQR 157 (217)
T ss_dssp -CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGC
T ss_pred ccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccccc
Confidence 568999999999999988899999999999999998743222222 2222222 467899999999996532
Q ss_pred hhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 342 PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 342 ~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
. ...+++.++... ..++++++||++|. |++++++.|.+.+.
T Consensus 158 ~-v~~~~~~~~~~~-------~~~~~~~~Sa~~g~----------gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 158 E-VNERQARELADK-------YGIPYFETSAATGQ----------NVEKAVETLLDLIM 198 (217)
T ss_dssp C-SCHHHHHHHHHH-------TTCCEEEEBTTTTB----------THHHHHHHHHHHHH
T ss_pred c-cCHHHHHHHHHH-------CCCcEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 1 112233333222 24679999999998 88889998877653
No 104
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.63 E-value=8.7e-16 Score=151.89 Aligned_cols=158 Identities=18% Similarity=0.141 Sum_probs=107.0
Q ss_pred ccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec-----------CeEEEEe
Q psy1760 210 DKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-----------GTRINII 278 (793)
Q Consensus 210 e~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~-----------~~~i~ii 278 (793)
..+|+++|++|+|||||+++|+........ ....|.+... ...+.++ ...+.||
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 75 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKF--------------ITTVGIDFRE-KRVVYRANGPDGAVGRGQRIHLQLW 75 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSC--------------CCCCSEEEEE-EEEEECTTSCCCSSCCCEEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcCc--------------ccccceeeee-EEEEEecCCcccccccCcEEEEEEE
Confidence 358999999999999999999864221100 0001111110 1223333 3589999
Q ss_pred cCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHH
Q psy1760 279 DTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLF 353 (793)
Q Consensus 279 DTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~ 353 (793)
||||+.+|.......++.+|++|+|+|+++....+. ..++..+.. .++|+++|+||+|+...+. ...+++.++.
T Consensus 76 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~ 154 (195)
T 3bc1_A 76 DTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRA-VKEEEARELA 154 (195)
T ss_dssp EECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCC-SCHHHHHHHH
T ss_pred eCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccc-cCHHHHHHHH
Confidence 999999999999999999999999999987533333 233343433 5789999999999965321 1123333333
Q ss_pred hhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 354 DKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 354 ~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
... .+|++++||++|. |++++++.|.+.+.
T Consensus 155 ~~~-------~~~~~~~Sa~~~~----------~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 155 EKY-------GIPYFETSAANGT----------NISHAIEMLLDLIM 184 (195)
T ss_dssp HHH-------TCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HHc-------CCCEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 222 3579999999998 99999999877654
No 105
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.63 E-value=4.9e-16 Score=155.92 Aligned_cols=159 Identities=19% Similarity=0.133 Sum_probs=104.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+...... ......|.+.......+......+.||||||+.+|....
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 94 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNEFRE--------------NISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIA 94 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCCCC------------------------CEEEEEEETTEEEEEEEEECTTCTTCHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCc--------------cCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhH
Confidence 589999999999999999998652110 011112333322233333334679999999999999999
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhH-HHHHHHHH---cCCccEEEEecccCCCCC----hhhh-HhHHHHHHhhhccccc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNAR----PEWV-VDATFDLFDKLCATEE 361 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~ip~IvvINKiD~~~a~----~~~v-~~~i~~~~~~l~~~~~ 361 (793)
...++.+|++|+|+|+++....+.. .++..+.. .++|+++|+||+|+.... ...+ .++...+...
T Consensus 95 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~------ 168 (199)
T 2p5s_A 95 KSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMT------ 168 (199)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHH------
T ss_pred HHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHH------
Confidence 9999999999999999875433332 23333333 378999999999986311 0111 1122222211
Q ss_pred ccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 362 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 362 ~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
..+|++++||++|. |++++++.|.+.+.
T Consensus 169 -~~~~~~~~SA~~g~----------gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 169 -YGALFCETSAKDGS----------NIVEAVLHLAREVK 196 (199)
T ss_dssp -HTCEEEECCTTTCT----------THHHHHHHHHHHHT
T ss_pred -cCCeEEEeeCCCCC----------CHHHHHHHHHHHHH
Confidence 24679999999998 99999999987664
No 106
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.63 E-value=4.5e-16 Score=150.65 Aligned_cols=156 Identities=20% Similarity=0.187 Sum_probs=106.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+...... ...+.++.......+.+++ ..+.||||||+.+|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 67 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNP----------------SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT 67 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-----------------------CCEEEEEEESSSCEEEEEEECCTTGGGTSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCC----------------CCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhh
Confidence 479999999999999999998652110 1112222233334455554 5789999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.+...++.+|++++|+|+++....+. ..++..+.. .+.|+++|+||+|+.... ...++..++.... .
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~-------~ 138 (170)
T 1g16_A 68 ITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV--VTADQGEALAKEL-------G 138 (170)
T ss_dssp CCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC--SCHHHHHHHHHHH-------T
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCc--cCHHHHHHHHHHc-------C
Confidence 88889999999999999987432222 233344433 378999999999994322 1122333332222 3
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+|++++||++|. |++++++.|.+.+..
T Consensus 139 ~~~~~~Sa~~~~----------gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 139 IPFIESSAKNDD----------NVNEIFFTLAKLIQE 165 (170)
T ss_dssp CCEEECBTTTTB----------SHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCC----------CHHHHHHHHHHHHHH
Confidence 579999999998 999999999877653
No 107
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.63 E-value=5.9e-16 Score=149.62 Aligned_cols=155 Identities=16% Similarity=0.096 Sum_probs=89.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|++.... ......|.+.. ....+......+.+|||||+..|....
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~---------------~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~ 66 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDG---------------PEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGRWLP 66 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC-------------------------CEEE-EEEEETTEEEEEEEEECC---------
T ss_pred EEEEEECCCCCCHHHHHHHHcCcccc---------------CCCCccccceE-EEEEECCEEEEEEEEECCCCccchhhh
Confidence 37899999999999999999754211 11122333432 222333334678999999999998888
Q ss_pred HHHhhccCcEEEEEeCCCCCCc-hhHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
...++.+|++++|+|+++.... ....++..+.. .++|+++|+||+|+...+. ...++...+... ..+
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~~ 138 (166)
T 3q72_A 67 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE-VSVDEGRACAVV-------FDC 138 (166)
T ss_dssp ------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCC-SCHHHHHHHHHH-------TTC
T ss_pred hhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccc-cCHHHHHHHHHH-------hCC
Confidence 8889999999999999864221 12233344433 3789999999999975431 111222222111 246
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
|++++||++|. |++++++.|.+.+
T Consensus 139 ~~~~~Sa~~~~----------gi~~l~~~l~~~~ 162 (166)
T 3q72_A 139 KFIETSAALHH----------NVQALFEGVVRQI 162 (166)
T ss_dssp EEEECBGGGTB----------SHHHHHHHHHHHH
T ss_pred cEEEeccCCCC----------CHHHHHHHHHHHH
Confidence 89999999998 9999999998765
No 108
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.63 E-value=5.9e-16 Score=153.12 Aligned_cols=155 Identities=23% Similarity=0.305 Sum_probs=111.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH--
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG-- 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~-- 288 (793)
.+|+++|++|+|||||+++|++... ..+...|+|++.....+.+++..+++|||||+.+|..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 71 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENV----------------YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS 71 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCE----------------EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc----------------cccCCCCeeccceEEEEEeCCcEEEEEECCCcCcccccc
Confidence 4899999999999999999986411 1123346677777777888899999999999988742
Q ss_pred ----HHHHHhh--ccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccc
Q psy1760 289 ----EVERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 289 ----ev~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~ 362 (793)
.....+. .+|++++|+|+.. ......++..+...+.|+++|+||+|+...+. +..+..++...+
T Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~------ 141 (188)
T 2wjg_A 72 IDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLG--IEIDVDKLEKIL------ 141 (188)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTT--CCCCHHHHHHHH------
T ss_pred HHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhcccccc--chHHHHHHHHHh------
Confidence 2233343 4999999999875 23344566666777899999999999864321 111222222222
Q ss_pred cCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 363 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 363 l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
.++++++||++|. |++++++.|.+.++..
T Consensus 142 -~~~~~~~Sa~~~~----------~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 142 -GVKVVPLSAAKKM----------GIEELKKAISIAVKDK 170 (188)
T ss_dssp -TSCEEECBGGGTB----------SHHHHHHHHHHHHTTC
T ss_pred -CCCeEEEEecCCC----------CHHHHHHHHHHHHHhc
Confidence 3579999999998 9999999998887654
No 109
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.63 E-value=3.5e-16 Score=177.98 Aligned_cols=155 Identities=21% Similarity=0.285 Sum_probs=113.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCC--------
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPG-------- 282 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPG-------- 282 (793)
.+|+|+|.+|+|||||+|+|++.. ...+....|+|.+.....+.|.+..+++|||||
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~---------------~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~ 88 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGER---------------ISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPF 88 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEE---------------EC-----------CEEEECTTCSSCCEEECCCC------CC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC---------------CcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHH
Confidence 479999999999999999998652 223345579999998899999999999999999
Q ss_pred cccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccc
Q psy1760 283 HADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 283 h~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~ 362 (793)
+..+...+..+++.+|++|+|+|+.++.......+++.+...+.|+|+|+||+|+.... ....++ ..++.
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~-----~~~~e~-~~lg~---- 158 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR-----ANIYDF-YSLGF---- 158 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC--------------CCS-GGGSS----
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh-----hhHHHH-HHcCC----
Confidence 55566667778899999999999999999999999999988999999999999986431 111111 11221
Q ss_pred cCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 363 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 363 l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
-+++++||++|. |+.+|++.+.+.++..
T Consensus 159 --~~~~~iSA~~g~----------gv~~L~~~i~~~l~~~ 186 (456)
T 4dcu_A 159 --GEPYPISGTHGL----------GLGDLLDAVAEHFKNI 186 (456)
T ss_dssp --SSEEECCTTTCT----------THHHHHHHHHTTGGGS
T ss_pred --CceEEeeccccc----------chHHHHHHHHhhcccc
Confidence 146799999998 9999999999888654
No 110
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.62 E-value=5.2e-16 Score=152.65 Aligned_cols=157 Identities=15% Similarity=0.172 Sum_probs=106.2
Q ss_pred ccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH
Q psy1760 210 DKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 289 (793)
Q Consensus 210 e~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 289 (793)
..+|+++|++|+|||||+++|+.... .. .....| .....+.+++..+.+|||||+.+|...
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~~--~~-------------~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 78 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGEV--VT-------------TKPTIG----FNVETLSYKNLKLNVWDLGGQTSIRPY 78 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEE--EE-------------ECSSTT----CCEEEEEETTEEEEEEEEC----CCTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCc--Cc-------------cCCcCc----cceEEEEECCEEEEEEECCCCHhHHHH
Confidence 35899999999999999999974321 00 011112 223456677899999999999998888
Q ss_pred HHHHhhccCcEEEEEeCCCCCCch-hHHHHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
+...++.+|++++|+|+++....+ ...++..+. ..+.|+++|+||+|+..... .+++.+.+...... ...
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~i~~~~~~~~~~--~~~ 153 (183)
T 1moz_A 79 WRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS---ASEVSKELNLVELK--DRS 153 (183)
T ss_dssp GGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC---HHHHHHHTTTTTCC--SSC
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCC---HHHHHHHhCccccc--CCc
Confidence 888899999999999998764322 233344443 25789999999999975421 23333333221111 234
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
++++++||++|. |+++++++|.+.++
T Consensus 154 ~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 154 WSIVASSAIKGE----------GITEGLDWLIDVIK 179 (183)
T ss_dssp EEEEEEBGGGTB----------THHHHHHHHHHHHH
T ss_pred eEEEEccCCCCc----------CHHHHHHHHHHHHH
Confidence 689999999998 99999999987764
No 111
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.62 E-value=8.7e-16 Score=152.91 Aligned_cols=158 Identities=19% Similarity=0.200 Sum_probs=109.2
Q ss_pred ccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHH
Q psy1760 210 DKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 289 (793)
Q Consensus 210 e~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 289 (793)
..+|+++|++|+|||||+++|+........ ....|.+.......+...+..+.||||||+.+|...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDS--------------RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI 90 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSC--------------CCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTT
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCC--------------CCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhh
Confidence 358999999999999999999875321110 111233433333334334578999999999999988
Q ss_pred HHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 290 VERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 290 v~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
....++.+|++|+|+|+++...... ..++..+.. .++|+++|+||+|+...+. ...++...+... ..+
T Consensus 91 ~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~~ 162 (193)
T 2oil_A 91 TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQARE-VPTEEARMFAEN-------NGL 162 (193)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCC-SCHHHHHHHHHH-------TTC
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccc-cCHHHHHHHHHH-------cCC
Confidence 9999999999999999987432222 233444433 3678999999999975321 112333333222 246
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
+++++||++|. |++++++.|.+.+
T Consensus 163 ~~~~~Sa~~~~----------gi~~l~~~l~~~i 186 (193)
T 2oil_A 163 LFLETSALDST----------NVELAFETVLKEI 186 (193)
T ss_dssp EEEEECTTTCT----------THHHHHHHHHHHH
T ss_pred EEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 79999999998 9999999987665
No 112
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.62 E-value=3.2e-16 Score=154.25 Aligned_cols=157 Identities=13% Similarity=0.095 Sum_probs=105.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec--CeEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~--~~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+......... .+. +.. ....+.++ ...+.+|||||+.+|..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~~~~~----~t~----------~~~---~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 68 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYI----PTV----------FDN---YSANVMVDGKPVNLGLWDTAGQEDYDR 68 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSSCC----CCS----------CCE---EEEEEEETTEEEEEEEECCCCSGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCcC----Ccc----------cce---eEEEEEECCEEEEEEEEECCCCHhHHH
Confidence 489999999999999999998642211000 000 111 11222333 35677999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH--HHHHHHHHc--CCccEEEEecccCCCCChhhhHh-------------HHHH
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALKL--GFKPIVVVNKIDRSNARPEWVVD-------------ATFD 351 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~~--~ip~IvvINKiD~~~a~~~~v~~-------------~i~~ 351 (793)
.....++.+|++++|+|+++....+.. .++..+... +.|+++|+||+|+.... ...+ +..+
T Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~ 146 (186)
T 1mh1_A 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK--DTIEKLKEKKLTPITYPQGLA 146 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCH--HHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccc--hhhhhhcccccccCCHHHHHH
Confidence 777788999999999999875332222 233444443 78999999999997542 1111 1111
Q ss_pred HHhhhcccccccCc-cEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCc
Q psy1760 352 LFDKLCATEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 403 (793)
Q Consensus 352 ~~~~l~~~~~~l~~-Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 403 (793)
+.. ...+ |++++||++|. |++++++.|.+.+..+.
T Consensus 147 ~~~-------~~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 147 MAK-------EIGAVKYLECSALTQR----------GLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp HHH-------HTTCSEEEECCTTTCT----------THHHHHHHHHHHHSCCC
T ss_pred HHH-------hcCCcEEEEecCCCcc----------CHHHHHHHHHHHHhccc
Confidence 111 1233 89999999998 99999999998886653
No 113
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.62 E-value=8.4e-16 Score=151.33 Aligned_cols=154 Identities=18% Similarity=0.223 Sum_probs=104.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+......... ...+... ...+.+++ ..+.+|||||+.+|..
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~--------------~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~ 81 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKIFVDDYD--------------PTIEDSY---LKHTEIDNQWAILDVLDTAGQEEFSA 81 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCC--------------TTCCEEE---EEEEEETTEEEEEEEEECCSCGGGCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------------CCcccee---EEEEEeCCcEEEEEEEECCCchhhHH
Confidence 589999999999999999998552111100 0011111 23333444 4567799999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHH----HHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKA----LKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~----~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
.....++.+|++++|+|+++....+. ..++..+ ...++|+++|+||+|+...+ ....++..++...+
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~v~~~~~~~~~~~~------- 153 (183)
T 3kkq_A 82 MREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR-KVTRDQGKEMATKY------- 153 (183)
T ss_dssp SHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTC-CSCHHHHHHHHHHH-------
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhcc-CcCHHHHHHHHHHh-------
Confidence 89999999999999999987522111 2222222 23678999999999987532 11223333333222
Q ss_pred CccEEEeecC-CCCcccccccccCCchhhHHHHHhhc
Q psy1760 364 DFPVIYTSAL-HGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 364 ~~Pvi~~SA~-~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.+|++++||+ +|. |++++++.|.+.+
T Consensus 154 ~~~~~~~Sa~~~~~----------~v~~l~~~l~~~i 180 (183)
T 3kkq_A 154 NIPYIETSAKDPPL----------NVDKTFHDLVRVI 180 (183)
T ss_dssp TCCEEEEBCSSSCB----------SHHHHHHHHHHHH
T ss_pred CCeEEEeccCCCCC----------CHHHHHHHHHHHH
Confidence 3679999999 888 9999999997765
No 114
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.62 E-value=1.3e-15 Score=154.22 Aligned_cols=164 Identities=21% Similarity=0.247 Sum_probs=103.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec---CeEEEEecCCCcccch
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---GTRINIIDTPGHADFG 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~---~~~i~iiDTPGh~df~ 287 (793)
.+|+++|++|+|||||+++|+....... ...++ .....+.++ +..++||||||+.+|.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~~~~~-----------------~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 68 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQYRDT-----------------QTSIT--DSSAIYKVNNNRGNSLTLIDLPGHESLR 68 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCCB-----------------CCCCS--CEEEEEECSSTTCCEEEEEECCCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcccc-----------------cCCcc--eeeEEEEecCCCccEEEEEECCCChhHH
Confidence 4899999999999999999986531100 01111 112225555 6789999999999998
Q ss_pred H-HHHHHhhccCcEEEEEeCCCCCCchhHH---HHHHHH------HcCCccEEEEecccCCCCC-hhhhHhHHHHHHhhh
Q psy1760 288 G-EVERILSMVDNVLLLIDAVEGPMPQTRF---VTRKAL------KLGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKL 356 (793)
Q Consensus 288 ~-ev~~~l~~aD~allVVDa~~g~~~qt~~---~l~~~~------~~~ip~IvvINKiD~~~a~-~~~v~~~i~~~~~~l 356 (793)
. .+...++.+|++|+|+|+++ ...+... .|.... ..++|+++|+||+|+...+ .+...+.+.+.+..+
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~ 147 (214)
T 2fh5_B 69 FQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTL 147 (214)
T ss_dssp HHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHH
Confidence 7 56677899999999999986 2122222 222221 2368999999999997653 444555555544311
Q ss_pred ---------------------ccc-----cccc--CccEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 357 ---------------------CAT-----EEQL--DFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 357 ---------------------~~~-----~~~l--~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
+.. ...+ .++++.+||++|.+.. ...|+++++++|.+.
T Consensus 148 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~----~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 148 RVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDT----GSADIQDLEKWLAKI 213 (214)
T ss_dssp HHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-----------CCBCHHHHHHHHHH
T ss_pred hccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccc----cccChHHHHHHHHHh
Confidence 000 0011 5679999999992110 012999999998764
No 115
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=7.6e-16 Score=152.90 Aligned_cols=158 Identities=20% Similarity=0.182 Sum_probs=110.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+...... ......|.+.......+......+.||||||+.+|....
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 81 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFDP--------------ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLT 81 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCT--------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCc--------------cCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhh
Confidence 489999999999999999998652111 011122344433333444445789999999999999889
Q ss_pred HHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
...++.+|++|+|+|+.+...... ..++..+.. .++|+++|+||+|+..... ..++..++... ..+
T Consensus 82 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~-------~~~ 152 (195)
T 1x3s_A 82 PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREV--DRNEGLKFARK-------HSM 152 (195)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCS--CHHHHHHHHHH-------TTC
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCccccc--CHHHHHHHHHH-------cCC
Confidence 999999999999999987533222 223344433 3678899999999954321 12233333322 246
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+++++||++|. |++++++.|.+.+..
T Consensus 153 ~~~~~Sa~~~~----------gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 153 LFIEASAKTCD----------GVQCAFEELVEKIIQ 178 (195)
T ss_dssp EEEECCTTTCT----------THHHHHHHHHHHHHT
T ss_pred EEEEecCCCCC----------CHHHHHHHHHHHHHh
Confidence 79999999998 999999999887754
No 116
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.62 E-value=1.6e-15 Score=145.56 Aligned_cols=153 Identities=14% Similarity=0.129 Sum_probs=103.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec--CeEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~--~~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+......... .++.......+.++ .+.+.+|||||+.+|..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 66 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECD-----------------PTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA 66 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCC-----------------TTCCEEEEEEEEETTEEEEEEEEECCCCSSCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccC-----------------CccceEEEEEEEECCEEEEEEEEECCCchhhhH
Confidence 379999999999999999998652211000 00001111223333 35688999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
.....+..+|++++|+|+.+....+ ...++..+.. .++|+++|+||+|+.... ...++..++....
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~------- 137 (166)
T 2ce2_X 67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAART--VESRQAQDLARSY------- 137 (166)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC--SCHHHHHHHHHHH-------
T ss_pred HHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcc--cCHHHHHHHHHHc-------
Confidence 8888999999999999998642211 2233333333 278999999999987532 1223333333222
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.+|++++||++|. |++++++.|.+.+
T Consensus 138 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 138 GIPYIETSAKTRQ----------GVEDAFYTLVREI 163 (166)
T ss_dssp TCCEEEECTTTCT----------THHHHHHHHHHHH
T ss_pred CCeEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 3589999999998 9999999998765
No 117
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=152.98 Aligned_cols=157 Identities=17% Similarity=0.176 Sum_probs=108.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+...... +....++.+.....+.+++ ..+.||||||+.+|..
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 93 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFSE----------------RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRT 93 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC--------------------------CEEEEEEEETTEEEEEEEECCTTCGGGHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCC----------------CCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHH
Confidence 589999999999999999998652110 0111122233334555665 6899999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.....++.+|++|+|+|+++....+ ...++..+.. .++|+++|+||+|+...+. ...+++.++.... .
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~-v~~~~~~~~~~~~-------~ 165 (201)
T 2hup_A 94 ITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELRE-VSLAEAQSLAEHY-------D 165 (201)
T ss_dssp HHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC-SCHHHHHHHHHHT-------T
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccc-cCHHHHHHHHHHc-------C
Confidence 8999999999999999998642222 2233444443 4688999999999975321 1123344433322 3
Q ss_pred c-cEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 365 F-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 365 ~-Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+ +++.+||++|. |++++++.|.+.+..
T Consensus 166 ~~~~~~~SA~~g~----------gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 166 ILCAIETSAKDSS----------NVEEAFLRVATELIM 193 (201)
T ss_dssp CSEEEECBTTTTB----------SHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCC----------CHHHHHHHHHHHHHH
Confidence 4 79999999998 999999999887754
No 118
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.62 E-value=6.8e-16 Score=149.11 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=105.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec--CeEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~--~~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+........ ....|.+. ....+.++ ...+.+|||||+.+|..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~--------------~~t~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 69 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDY--------------KKTIGVDF--LERQIQVNDEDVRLMLWDTAGQEEFDA 69 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCS--------------SCCCSSSE--EEEEEEETTEEEEEEEECCTTGGGTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCC--------------CCceEEEE--EEEEEEECCEEEEEEEEcCCCcHhHHH
Confidence 48999999999999999999865211100 00011122 22333334 35899999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHH--cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK--LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~--~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
.....++.+|++++|+|+++....+ ...++..+.. .+.|+++|+||+|+...+. ...+++.++.... .+
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~-------~~ 141 (168)
T 1z2a_A 70 ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSC-IKNEEAEGLAKRL-------KL 141 (168)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCS-SCHHHHHHHHHHH-------TC
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccc-cCHHHHHHHHHHc-------CC
Confidence 8888999999999999998743222 2223333333 3789999999999865321 1123333333222 35
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
|++++||++|. |++++++.|.+.+
T Consensus 142 ~~~~~Sa~~~~----------~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 142 RFYRTSVKEDL----------NVSEVFKYLAEKH 165 (168)
T ss_dssp EEEECBTTTTB----------SSHHHHHHHHHHH
T ss_pred eEEEEecCCCC----------CHHHHHHHHHHHH
Confidence 79999999998 9999999987755
No 119
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.62 E-value=7.9e-16 Score=150.51 Aligned_cols=156 Identities=17% Similarity=0.172 Sum_probs=105.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+........ ....+... ...+.+++ ..+.||||||+.+|..
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------~~t~~~~~---~~~~~~~~~~~~~~~~Dt~G~~~~~~ 72 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSYFVSDY--------------DPTIEDSY---TKICSVDGIPARLDILDTAGQEEFGA 72 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCCSSC--------------CTTCCEEE---EEEEEETTEEEEEEEEECCCTTTTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcccc--------------CCCcCceE---EEEEEECCEEEEEEEEECCCchhhHH
Confidence 58999999999999999999876221100 00011111 13344554 5788999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCc-hhHHHHHHH----HHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKA----LKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~----~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
.....++.+|++++|+|+.+.... ....++..+ ...++|+++|+||+|+...+. ...++...+... .
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~~~~-------~ 144 (181)
T 2fn4_A 73 MREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ-VPRSEASAFGAS-------H 144 (181)
T ss_dssp CHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC-SCHHHHHHHHHH-------T
T ss_pred HHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccc-cCHHHHHHHHHH-------c
Confidence 888899999999999999874211 112222222 234789999999999965321 111222222111 2
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
.++++++||++|. |++++++.|.+.+..
T Consensus 145 ~~~~~~~Sa~~~~----------gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 145 HVAYFEASAKLRL----------NVDEAFEQLVRAVRK 172 (181)
T ss_dssp TCEEEECBTTTTB----------SHHHHHHHHHHHHHH
T ss_pred CCeEEEecCCCCC----------CHHHHHHHHHHHHHH
Confidence 4679999999998 999999999877654
No 120
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.62 E-value=6.1e-16 Score=155.47 Aligned_cols=156 Identities=19% Similarity=0.166 Sum_probs=106.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+....... ....++.+.....+.+++ ..+.||||||+.+|..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 72 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQ----------------YKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS 72 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSS----------------CCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCC----------------CCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH
Confidence 5899999999999999999986532110 111222333333444444 6899999999999888
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhHH-HHHHHHH-------cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTRF-VTRKALK-------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 360 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~~-~l~~~~~-------~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~ 360 (793)
.....++.+|++|+|+|++++...+... ++..+.. .++|+++|+||+|+.... ...+++..+...
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~----- 145 (207)
T 1vg8_A 73 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ--VATKRAQAWCYS----- 145 (207)
T ss_dssp SCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC--SCHHHHHHHHHH-----
T ss_pred hHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccc--cCHHHHHHHHHh-----
Confidence 7778899999999999998753322222 2222221 478999999999997432 122333333221
Q ss_pred cccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 361 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 361 ~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
...+|++++||++|. |++++++.|.+.+.
T Consensus 146 -~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 146 -KNNIPYFETSAKEAI----------NVEQAFQTIARNAL 174 (207)
T ss_dssp -TTSCCEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred -cCCceEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 224689999999998 99999999987764
No 121
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.62 E-value=1.4e-15 Score=149.62 Aligned_cols=155 Identities=16% Similarity=0.174 Sum_probs=106.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+........ ..++.......+.+++ +.+.||||||+.+|..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 81 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDEFVEDY-----------------EPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAA 81 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSC-----------------CTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCcC-----------------CCccceEEEEEEEECCEEEEEEEEECCCCcccHH
Confidence 58999999999999999999865311100 0111111122334444 5789999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
.....++.+|++++|+|+.+....+. ..++..+.. .++|+++|+||+|+...+. ...+++.++... .
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~-------~ 153 (187)
T 2a9k_A 82 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ-VSVEEAKNRAEQ-------W 153 (187)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC-SCHHHHHHHHHH-------T
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc-cCHHHHHHHHHH-------c
Confidence 99999999999999999986422111 222233222 3789999999999965321 122334443322 2
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
.+|++++||++|. |++++++.|.+.+.
T Consensus 154 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 154 NVNYVETSAKTRA----------NVDKVFFDLMREIR 180 (187)
T ss_dssp TCEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred CCeEEEeCCCCCC----------CHHHHHHHHHHHHH
Confidence 4679999999998 99999999987664
No 122
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=4.1e-16 Score=155.30 Aligned_cols=161 Identities=17% Similarity=0.133 Sum_probs=112.3
Q ss_pred ccccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccch
Q psy1760 208 TLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 287 (793)
Q Consensus 208 ~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 287 (793)
....+|+++|++|+|||||+++|+....... .....|++.......+...+..+.||||||+..|.
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 86 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPA--------------FVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYR 86 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCC--------------EEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcc--------------cCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 3345899999999999999999986531110 01112344444445555567899999999999999
Q ss_pred HHHHHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 288 GEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 288 ~ev~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
......++.+|++|+|+|+++....+ ...++..+.. .++|+++|+||+|+...+. ...++...+....
T Consensus 87 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~------- 158 (191)
T 3dz8_A 87 TITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERV-VPTEKGQLLAEQL------- 158 (191)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC-SCHHHHHHHHHHH-------
T ss_pred HHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc-cCHHHHHHHHHHc-------
Confidence 99999999999999999998742222 2334444444 4789999999999865421 1122223322222
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
.++++.+||++|. |++++++.|.+.+.
T Consensus 159 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 159 GFDFFEASAKENI----------SVRQAFERLVDAIC 185 (191)
T ss_dssp TCEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 4579999999998 99999999887653
No 123
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.61 E-value=3.6e-16 Score=165.81 Aligned_cols=153 Identities=21% Similarity=0.274 Sum_probs=109.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH--
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG-- 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~-- 288 (793)
.+|+++|++|+|||||+++|.+... ......|+|+......+.+ +..+.+|||||+.+|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~----------------~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~ 66 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQ----------------RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYS 66 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCC----------------CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCC----------------cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCC
Confidence 4799999999999999999975421 1122347777776666766 78999999999988752
Q ss_pred ----HHHHHhh--ccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccc
Q psy1760 289 ----EVERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 289 ----ev~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~ 362 (793)
.....+. .+|++++|+|+++. .....++..+.+.++|+++|+||+|+...+. +..+...+-. .
T Consensus 67 ~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~--~~~~~~~l~~-------~ 135 (272)
T 3b1v_A 67 PEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQG--KKINVDKLSY-------H 135 (272)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHTT--CCCCHHHHHH-------H
T ss_pred hHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcCC--cHHHHHHHHH-------H
Confidence 2233444 59999999999862 3344555666778999999999999864211 1111222211 1
Q ss_pred cCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 363 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 363 l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+++|++++||++|. |+++|++.|.+.+..
T Consensus 136 lg~~vi~~SA~~g~----------gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 136 LGVPVVATSALKQT----------GVDQVVKKAAHTTTS 164 (272)
T ss_dssp HTSCEEECBTTTTB----------SHHHHHHHHHHSCTT
T ss_pred cCCCEEEEEccCCC----------CHHHHHHHHHHHHhh
Confidence 24689999999998 999999999877643
No 124
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=5.9e-16 Score=154.25 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=106.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+......... .+. +.. ....+.+++ ..+.||||||+.+|..
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~~~~~~----~t~----------~~~---~~~~~~~~~~~~~~~i~D~~G~~~~~~ 81 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAFPEEYV----PTV----------FDH---YAVSVTVGGKQYLLGLYDTAGQEDYDR 81 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCCCSCC----CSS----------CCC---EEEEEESSSCEEEEEEECCCCSSSSTT
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCC----Ccc----------cce---eEEEEEECCEEEEEEEEECCCCcchhH
Confidence 589999999999999999998652211000 000 111 112334444 6889999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH--HHHHHHHHc--CCccEEEEecccCCCCCh-----------hhhHhHHHHHH
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALKL--GFKPIVVVNKIDRSNARP-----------EWVVDATFDLF 353 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~~--~ip~IvvINKiD~~~a~~-----------~~v~~~i~~~~ 353 (793)
.....++.+|++|+|+|+++....+.. .++..+... ++|+++|+||+|+..... .-..++..++.
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (194)
T 2atx_A 82 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA 161 (194)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH
T ss_pred HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHH
Confidence 888889999999999999875322222 334445544 789999999999975421 00112222222
Q ss_pred hhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 354 DKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 354 ~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
..++ ..+++.+||++|. |++++++.|.+.+..
T Consensus 162 ~~~~------~~~~~~~Sa~~g~----------gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 162 KEIG------ACCYVECSALTQK----------GLKTVFDEAIIAILT 193 (194)
T ss_dssp HHHT------CSCEEECCTTTCT----------THHHHHHHHHHHHHC
T ss_pred HHcC------CcEEEEeeCCCCC----------CHHHHHHHHHHHHhc
Confidence 2221 1379999999998 999999999877644
No 125
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.61 E-value=9.6e-16 Score=152.20 Aligned_cols=156 Identities=21% Similarity=0.214 Sum_probs=102.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccch-
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG- 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~- 287 (793)
.+|+++|++|+|||||+++|+....... ....++.+.....+.+++ ..++||||||+.+|.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 84 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDR----------------TEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK 84 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSS----------------CCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCC----------------CCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhh
Confidence 5899999999999999999986522110 011112222233444444 689999999999887
Q ss_pred HHHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccc
Q psy1760 288 GEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 288 ~ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~ 362 (793)
......++.+|++|+|+|+++....+. ..++..+. ..++|+++|+||+|+...+. ...++...+...
T Consensus 85 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~~~~------- 156 (189)
T 1z06_A 85 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQ-VPTDLAQKFADT------- 156 (189)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC-SCHHHHHHHHHH-------
T ss_pred hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccce-eCHHHHHHHHHH-------
Confidence 667788999999999999987422222 22233332 34789999999999965321 112222222221
Q ss_pred cCccEEEeecCCC---CcccccccccCCchhhHHHHHhhcC
Q psy1760 363 LDFPVIYTSALHG---YANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 363 l~~Pvi~~SA~~g---~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
..++++.+||++| . |++++++.|.+.++
T Consensus 157 ~~~~~~~~Sa~~~~~~~----------~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 157 HSMPLFETSAKNPNDND----------HVEAIFMTLAHKLK 187 (189)
T ss_dssp TTCCEEECCSSSGGGGS----------CHHHHHHHHC----
T ss_pred cCCEEEEEeCCcCCccc----------CHHHHHHHHHHHHh
Confidence 2467999999998 5 89999999977664
No 126
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.60 E-value=4.7e-15 Score=152.34 Aligned_cols=159 Identities=16% Similarity=0.109 Sum_probs=105.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccch---
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG--- 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~--- 287 (793)
.+|+++|.+|+|||||+++|+..... .....++|.......+.+++..+.||||||+.++.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 93 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRANVD----------------VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFEN 93 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTCEE----------------EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc----------------cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccch
Confidence 58999999999999999999865211 11224556666666677788999999999994321
Q ss_pred ------HHHHHHhhccCcEEEEEeCCCCCCch---hHHHHHHHHHc--CCccEEEEecccCCCCCh-h-hhHhHHHHHHh
Q psy1760 288 ------GEVERILSMVDNVLLLIDAVEGPMPQ---TRFVTRKALKL--GFKPIVVVNKIDRSNARP-E-WVVDATFDLFD 354 (793)
Q Consensus 288 ------~ev~~~l~~aD~allVVDa~~g~~~q---t~~~l~~~~~~--~ip~IvvINKiD~~~a~~-~-~v~~~i~~~~~ 354 (793)
..+......+|++|+|+|+++..... ...++..+... ++|+++|+||+|+...+. . ...+.+.++..
T Consensus 94 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 173 (228)
T 2qu8_A 94 RNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILD 173 (228)
T ss_dssp CCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHH
Confidence 12233467789999999998764432 23455555554 789999999999975421 1 11112222221
Q ss_pred hhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 355 KLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 355 ~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
..+ ..++++++||++|. |++++++.|.+.+.
T Consensus 174 ~~~-----~~~~~~~~SA~~g~----------gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 174 NVK-----NPIKFSSFSTLTGV----------GVEQAKITACELLK 204 (228)
T ss_dssp HCC-----SCEEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred hcC-----CCceEEEEecccCC----------CHHHHHHHHHHHHH
Confidence 111 12579999999998 99999999887664
No 127
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.60 E-value=2.3e-15 Score=150.90 Aligned_cols=156 Identities=16% Similarity=0.173 Sum_probs=106.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+........ .+++.......+.+++ ..+.||||||+.+|..
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 77 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDEFVEDY-----------------EPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAA 77 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTC-----------------CTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCCC-----------------CCccceEEEEEEEECCEEEEEEEEcCCChhhhHH
Confidence 58999999999999999999865311100 0111111123344444 5789999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
.....++.+|++++|+|+.+...... ..++..+.. .++|+++|+||+|+...+. ...+++.++....
T Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~------- 149 (206)
T 2bov_A 78 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ-VSVEEAKNRAEQW------- 149 (206)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCC-SCHHHHHHHHHHH-------
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccccc-ccHHHHHHHHHHh-------
Confidence 99999999999999999987422111 222333332 3789999999999975321 1223344433222
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
.+|++++||++|. |++++++.|.+.+..
T Consensus 150 ~~~~~~~Sa~~g~----------gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 150 NVNYVETSAKTRA----------NVDKVFFDLMREIRA 177 (206)
T ss_dssp TCEEEEECTTTCT----------THHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCC----------CHHHHHHHHHHHHHH
Confidence 3579999999998 999999999877643
No 128
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.60 E-value=1.8e-15 Score=158.19 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=113.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCc-------
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH------- 283 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh------- 283 (793)
.+|+++|++|+|||||+|+|++........ ...|+|.......+.+++..++||||||+
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~~~~~~--------------~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~ 87 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRRFFSRL--------------GATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSK 87 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCCC-----------------------CCSCEEEEEEETTEEEEEEECCSCSSTTHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccccC--------------CCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCc
Confidence 589999999999999999998763322110 11245666666778889999999999998
Q ss_pred -ccchHHHHHHh----hccCcEEEEEeCCCCCCchhHHHHHHHHHc------CCccEEEEecccCCCCChhhhHh-----
Q psy1760 284 -ADFGGEVERIL----SMVDNVLLLIDAVEGPMPQTRFVTRKALKL------GFKPIVVVNKIDRSNARPEWVVD----- 347 (793)
Q Consensus 284 -~df~~ev~~~l----~~aD~allVVDa~~g~~~qt~~~l~~~~~~------~ip~IvvINKiD~~~a~~~~v~~----- 347 (793)
.++..++.+++ +.+|++|+|+|+.. ....+...++.+.+. +.|+|+|.||+|+.+.+.++.+.
T Consensus 88 ~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~ 166 (247)
T 3lxw_A 88 TDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENR 166 (247)
T ss_dssp HSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccH
Confidence 56667777776 89999999999975 666666667776654 77899999999998766555443
Q ss_pred HHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 348 ATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 348 ~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
.+++++...+. ++++.++....+ ....++.+|++.|.+.++.
T Consensus 167 ~l~~l~~~~g~-------~~~~~~~~~~~~-----~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 167 ALRELVAECGG-------RVCAFDNRATGR-----EQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HHHHHHHHTTT-------CEEECCTTCCHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-------eEEEEeCCCCcc-----ccHHHHHHHHHHHHHHHHH
Confidence 24444444332 345555443210 0012889999999887764
No 129
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.60 E-value=1e-15 Score=151.82 Aligned_cols=157 Identities=12% Similarity=0.145 Sum_probs=109.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+..... +. ....| .....+.+++..+++|||||+.+|....
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~~~~------------~~---~~t~~----~~~~~~~~~~~~~~~~Dt~G~~~~~~~~ 83 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLGDVV------------TT---VPTVG----VNLETLQYKNISFEVWDLGGQTGVRPYW 83 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSCCE------------EE---CSSTT----CCEEEEEETTEEEEEEEECCSSSSCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC------------Cc---CCCCc----eEEEEEEECCEEEEEEECCCCHhHHHHH
Confidence 58999999999999999999743211 00 00112 2234566778999999999999888777
Q ss_pred HHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
...++.+|++|+|+|+++....+ ....+..... .+.|+++|+||+|+..... .+++.+.+..... ....+
T Consensus 84 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~--~~~~~ 158 (189)
T 2x77_A 84 RCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS---EAEIAEQLGVSSI--MNRTW 158 (189)
T ss_dssp SSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGGC--CSSCE
T ss_pred HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC---HHHHHHHhChhhc--cCCce
Confidence 77889999999999998753322 2233333333 3789999999999976432 1223332221111 12356
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
|++++||++|. |++++++.|.+.++.
T Consensus 159 ~~~~~Sa~~~~----------gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 159 TIVKSSSKTGD----------GLVEGMDWLVERLRE 184 (189)
T ss_dssp EEEECCTTTCT----------THHHHHHHHHHHHHH
T ss_pred EEEEccCCCcc----------CHHHHHHHHHHHHHh
Confidence 89999999998 999999999887754
No 130
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.60 E-value=8.2e-16 Score=149.03 Aligned_cols=156 Identities=16% Similarity=0.103 Sum_probs=99.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+....... ....++.......+.+++ ..+.+|||||+.+|..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 70 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDK----------------HITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA 70 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSS----------------CCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcC----------------CCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh
Confidence 4899999999999999999986532110 011111222223344443 5788999999999888
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHH---HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKAL---KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~---~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.....++.+|++++|+|+++....+. ..++..+. ..++|+++|+||+|+...+. ...++..++... ..
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~ 142 (170)
T 1z08_A 71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERH-VSIQEAESYAES-------VG 142 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCC-SCHHHHHHHHHH-------TT
T ss_pred hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccc-cCHHHHHHHHHH-------cC
Confidence 77778899999999999987432222 22333332 25789999999999965321 112333333322 23
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
++++++||++|. |++++++.|.+.++
T Consensus 143 ~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 143 AKHYHTSAKQNK----------GIEELFLDLCKRMI 168 (170)
T ss_dssp CEEEEEBTTTTB----------SHHHHHHHHHHHHH
T ss_pred CeEEEecCCCCC----------CHHHHHHHHHHHHh
Confidence 678999999998 99999999987654
No 131
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.60 E-value=1.1e-15 Score=152.29 Aligned_cols=157 Identities=17% Similarity=0.115 Sum_probs=106.4
Q ss_pred ccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccch
Q psy1760 210 DKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG 287 (793)
Q Consensus 210 e~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~ 287 (793)
..+|+++|++|+|||||+++|+........ ....|.+.. ...+.+++ ..++||||||+.+|.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~ 84 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------------DLTIGVEFG--ARMVNIDGKQIKLQIWDTAGQESFR 84 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCSSEE--EEEEEETTEEEEEEEECCTTGGGTS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCC--------------CCcccceeE--EEEEEECCEEEEEEEEECCCchhhh
Confidence 358999999999999999999865221100 011122222 23344444 689999999999998
Q ss_pred HHHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 288 GEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 288 ~ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
......++.+|++|+|+|+++....+. ..++..+.. .+.|+++|+||+|+...+. ...++..++... .
T Consensus 85 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~~~~-------~ 156 (191)
T 2a5j_A 85 SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRD-VKREEGEAFARE-------H 156 (191)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC-SCHHHHHHHHHH-------H
T ss_pred hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccc-cCHHHHHHHHHH-------c
Confidence 888889999999999999987432222 233444443 3788999999999965321 112233333222 2
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
.++++.+||++|. |++++++.|.+.+.
T Consensus 157 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 157 GLIFMETSAKTAC----------NVEEAFINTAKEIY 183 (191)
T ss_dssp TCEEEEECTTTCT----------THHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 4579999999998 99999999877654
No 132
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.60 E-value=7e-16 Score=154.77 Aligned_cols=158 Identities=15% Similarity=0.143 Sum_probs=80.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec----CeEEEEecCCCcccc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN----GTRINIIDTPGHADF 286 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~----~~~i~iiDTPGh~df 286 (793)
.+|+++|++|+|||||+++|+.....+.. +....+..+.....+.++ ...+.||||||+.+|
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 86 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGSKFLK--------------DYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLY 86 (208)
T ss_dssp EEEEEC------------------------------------------------CEEEECTTSSEEEEEEEEETTTTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccC--------------CCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHH
Confidence 48999999999999999999865111110 000111122334455555 468999999999999
Q ss_pred hHHHHHHhhccCcEEEEEeCCCCCCc-hhHHHHHHHHH------cCCccEEEEecccCCC-CChhhhHhHHHHHHhhhcc
Q psy1760 287 GGEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK------LGFKPIVVVNKIDRSN-ARPEWVVDATFDLFDKLCA 358 (793)
Q Consensus 287 ~~ev~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~------~~ip~IvvINKiD~~~-a~~~~v~~~i~~~~~~l~~ 358 (793)
.......++.+|++|+|+|+++.... ....++..+.. .++|+++|+||+|+.. .+ ....+++.++...+
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~-~v~~~~~~~~~~~~-- 163 (208)
T 2yc2_C 87 KEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRH-QVRLDMAQDWATTN-- 163 (208)
T ss_dssp HHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC--------CCCHHHHHHHHHHT--
T ss_pred HHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhc-cCCHHHHHHHHHHc--
Confidence 88888889999999999999875322 22334444443 4789999999999975 22 11123444443332
Q ss_pred cccccCccEEEeecCC-CCcccccccccCCchhhHHHHHhhcC
Q psy1760 359 TEEQLDFPVIYTSALH-GYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 359 ~~~~l~~Pvi~~SA~~-g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
.++++++||++ |. |++++++.|.+.+.
T Consensus 164 -----~~~~~~~Sa~~~~~----------gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 164 -----TLDFFDVSANPPGK----------DADAPFLSIATTFY 191 (208)
T ss_dssp -----TCEEEECCC-----------------CHHHHHHHHHHH
T ss_pred -----CCEEEEeccCCCCc----------CHHHHHHHHHHHHH
Confidence 36799999999 98 88899998877654
No 133
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.60 E-value=6.7e-16 Score=151.79 Aligned_cols=157 Identities=16% Similarity=0.151 Sum_probs=103.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+....... .....+.+. ...+.+++ +.++||||||+.+|..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~---~~~~~~~~~~~~~~l~Dt~G~~~~~~ 69 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQFVDS--------------YDPTIENTF---TKLITVNGQEYHLQLVDTAGQDEYSI 69 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSC--------------CCTTCCEEE---EEEEEETTEEEEEEEEECCCCCTTCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCC--------------CCCCccccE---EEEEEECCEEEEEEEEeCCCchhhhH
Confidence 4899999999999999999985421110 001112222 23334444 6779999999999877
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh-HHHH----HHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT-RFVT----RKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l----~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
.....++.+|++++|+|+.+....+. ..++ +.+...++|+++|+||+|+...+. ...++..++...+
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~------- 141 (181)
T 3t5g_A 70 FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV-ISYEEGKALAESW------- 141 (181)
T ss_dssp CCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCC-SCHHHHHHHHHHT-------
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcce-ecHHHHHHHHHHh-------
Confidence 77778899999999999986322111 1122 222234789999999999865431 1223333333222
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
.+|++++||++|. |++++++.|.+.+...
T Consensus 142 ~~~~~~~Sa~~~~----------~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 142 NAAFLESSAKENQ----------TAVDVFRRIILEAEKM 170 (181)
T ss_dssp TCEEEECCTTSHH----------HHHHHHHHHHHHHHTC
T ss_pred CCcEEEEecCCCC----------CHHHHHHHHHHHHHHh
Confidence 4579999999998 8999999998877543
No 134
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=153.58 Aligned_cols=159 Identities=17% Similarity=0.166 Sum_probs=105.5
Q ss_pred ccccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCccc
Q psy1760 208 TLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 285 (793)
Q Consensus 208 ~le~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~d 285 (793)
....+|+++|++|+|||||+++|+...... .....++.......+.+++ ..+.||||||+.+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 86 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQ----------------DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC----------------------------CCEEEEEEEETTEEEEEEEECCTTHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCc----------------cCCCcccceeEEEEEEECCeeeEEEEEcCCCcHh
Confidence 334689999999999999999998542111 0111222222233444555 7899999999988
Q ss_pred chHHHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccc
Q psy1760 286 FGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 361 (793)
Q Consensus 286 f~~ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~ 361 (793)
|.......++.+|++|+|+|+++....+. ..++..+.. .++|+++|+||+|+...+.. ...+..++...
T Consensus 87 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~~------ 159 (200)
T 2o52_A 87 FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREV-TFLEASRFAQE------ 159 (200)
T ss_dssp HSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCS-CHHHHHHHHHH------
T ss_pred HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccc-CHHHHHHHHHH------
Confidence 88888888999999999999987533222 223333332 47899999999999643211 11223333222
Q ss_pred ccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 362 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 362 ~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
..++++++||++|. |++++++.|.+.+.
T Consensus 160 -~~~~~~~~SA~~g~----------gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 160 -NELMFLETSALTGE----------NVEEAFLKCARTIL 187 (200)
T ss_dssp -TTCEEEEECTTTCT----------THHHHHHHHHHHHH
T ss_pred -cCCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 24679999999998 89999998877664
No 135
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.59 E-value=1.9e-15 Score=152.20 Aligned_cols=156 Identities=19% Similarity=0.208 Sum_probs=107.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+...... ...+.++.......+.+++ ..+.||||||+.+|..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 72 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTN----------------DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT 72 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCT----------------TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC----------------CCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHH
Confidence 589999999999999999998653211 0111222222333444554 5899999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH-HHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.....++.+|++|+|+|+++....+.. .++..+.. .++|+++|+||+|+...+. ...++..++... ..
T Consensus 73 ~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~ 144 (206)
T 2bcg_Y 73 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRV-VEYDVAKEFADA-------NK 144 (206)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC-SCHHHHHHHHHH-------TT
T ss_pred HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc-cCHHHHHHHHHH-------cC
Confidence 888889999999999999875332222 23333333 3578899999999976431 112233333222 24
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
+|++++||++|. |++++++.|.+.+.
T Consensus 145 ~~~~~~Sa~~g~----------gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 145 MPFLETSALDST----------NVEDAFLTMARQIK 170 (206)
T ss_dssp CCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 689999999998 89999998887664
No 136
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=2.6e-15 Score=151.72 Aligned_cols=158 Identities=20% Similarity=0.149 Sum_probs=108.2
Q ss_pred ccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccch
Q psy1760 210 DKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG 287 (793)
Q Consensus 210 e~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~ 287 (793)
..+|+++|.+|+|||||+++|+...... .....++.+.....+.+++ ..++||||||+.+|.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 89 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPP----------------GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFR 89 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCT----------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC----------------CCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHH
Confidence 3589999999999999999998652110 1111222333334555555 578999999999998
Q ss_pred HHHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 288 GEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 288 ~ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
......++.+|++|+|+|+++....+. ..++..+.. .++|+++|+||+|+...+. ...++...+... .
T Consensus 90 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~-v~~~~~~~~~~~-------~ 161 (201)
T 2ew1_A 90 SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERRE-VSQQRAEEFSEA-------Q 161 (201)
T ss_dssp HHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCS-SCHHHHHHHHHH-------H
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc-cCHHHHHHHHHH-------c
Confidence 888888999999999999987432222 233333333 3678899999999964321 112222222221 2
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
.++++++||++|. |++++++.|.+.+..
T Consensus 162 ~~~~~~~Sa~~g~----------gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 162 DMYYLETSAKESD----------NVEKLFLDLACRLIS 189 (201)
T ss_dssp TCCEEECCTTTCT----------THHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCC----------CHHHHHHHHHHHHHH
Confidence 4679999999998 999999998877643
No 137
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=3.4e-15 Score=148.88 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=105.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+......... ...+.+.. ....+......+.||||||+.+|....
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--------------~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 73 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGTFRDTYI--------------PTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQ 73 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCTTS--------------CCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCccc--------------Ccccccee-EEEEECCEEEEEEEEeCCChHHhHHHH
Confidence 489999999999999999998642211000 00111111 112222234578999999999999888
Q ss_pred HHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHH-----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~-----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
...++.+|++|+|+|+++....+ ...++..+.. .++|+++|+||+|+..... ..++...+... ..
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~-------~~ 144 (199)
T 2gf0_A 74 RLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREV--DTREAQAVAQE-------WK 144 (199)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSS--CHHHHHHHHHH-------HT
T ss_pred HHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcccc--CHHHHHHHHHH-------hC
Confidence 88999999999999998642211 1223333332 3679999999999975321 12222222222 23
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
++++++||++|. |+++|+++|.+.+...
T Consensus 145 ~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 145 CAFMETSAKMNY----------NVKELFQELLTLETRR 172 (199)
T ss_dssp CEEEECBTTTTB----------SHHHHHHHHHHHCSSS
T ss_pred CeEEEEecCCCC----------CHHHHHHHHHHHHhhh
Confidence 579999999998 9999999999887654
No 138
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.59 E-value=8.3e-16 Score=155.23 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=103.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+....... ...++.......+.+++ +.++||||||+.+|..
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 93 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTNAFPGE-----------------YIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR 93 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCC------------------CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTT
T ss_pred EEEEEECcCCCCHHHHHHHHHhCCCCCC-----------------cCCeecceeEEEEEECCEEEEEEEEECCCchhhHH
Confidence 4899999999999999999986522111 01111222222333444 4566999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH--HHHHHHHHc--CCccEEEEecccCCCCChh-hh----------HhHHHHHH
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALKL--GFKPIVVVNKIDRSNARPE-WV----------VDATFDLF 353 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~~--~ip~IvvINKiD~~~a~~~-~v----------~~~i~~~~ 353 (793)
.....++.+|++|+|+|+++....+.. .++..+... ++|+++|+||+|+...+.. +. .++...+.
T Consensus 94 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 173 (204)
T 4gzl_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 173 (204)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHH
Confidence 888889999999999999875433332 234444444 7899999999999764210 00 11111111
Q ss_pred hhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 354 DKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 354 ~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
..++ ..|++++||++|. |++++++.|.+.+
T Consensus 174 ~~~~------~~~~~~~SA~~g~----------gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 174 KEIG------AVKYLECSALTQR----------GLKTVFDEAIRAV 203 (204)
T ss_dssp HHTT------CSEEEECCTTTCT----------THHHHHHHHHHTT
T ss_pred HhcC------CcEEEEeeCCCCC----------CHHHHHHHHHHHh
Confidence 1111 2469999999998 9999999997653
No 139
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.59 E-value=4.7e-16 Score=152.65 Aligned_cols=161 Identities=16% Similarity=0.108 Sum_probs=100.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+......... .+..+ .. .....+......+.||||||+.+|....
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~~~~~~~----~t~~~----------~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 73 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYV----PTVFD----------NF-SANVVVNGATVNLGLWDTAGQEDYNRLR 73 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCC------------------------C-BCCCC-------CEEECCCC-CTTTTTG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCC----Ceeee----------eE-EEEEEECCEEEEEEEEECCCChhhhhhH
Confidence 489999999999999999998653111000 00000 00 0011122234567799999999998888
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhH--HHHHHHHHc--CCccEEEEecccCCCCChh---------hhHhHHHHHHhhhc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALKL--GFKPIVVVNKIDRSNARPE---------WVVDATFDLFDKLC 357 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~~--~ip~IvvINKiD~~~a~~~---------~v~~~i~~~~~~l~ 357 (793)
...++.+|++++|+|+++....+.. .++..+... ++|+++|+||+|+...+.. ...++..++...++
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 153 (182)
T 3bwd_D 74 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG 153 (182)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT
T ss_pred HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC
Confidence 8889999999999999874322222 233334332 7899999999998754211 01222233222222
Q ss_pred ccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 358 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 358 ~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
. .|++++||++|. |++++++.|.+.+..|
T Consensus 154 ~------~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 154 A------PAYIECSSKSQE----------NVKGVFDAAIRVVLQP 182 (182)
T ss_dssp C------SEEEECCTTTCT----------THHHHHHHHHHHHSCC
T ss_pred C------CEEEEEECCCCC----------CHHHHHHHHHHHHhcC
Confidence 1 378999999998 9999999998877543
No 140
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.59 E-value=2e-15 Score=150.57 Aligned_cols=157 Identities=16% Similarity=0.108 Sum_probs=106.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+......... ...+.+. ...+.+++ +.++||||||+.+|..
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~--------------~t~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~~~~ 86 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYV--------------PTVFENF---SHVMKYKNEEFILHLWDTAGQEEYDR 86 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCC--------------CCSEEEE---EEEEEETTEEEEEEEEEECCSGGGTT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCccC--------------Ceeeeee---EEEEEECCEEEEEEEEECCCcHHHHH
Confidence 589999999999999999998653211000 0011111 12233444 5679999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh--HHHHHHHHHc--CCccEEEEecccCCCCC-hhhhHhHHHHHHhhhccccccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT--RFVTRKALKL--GFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt--~~~l~~~~~~--~ip~IvvINKiD~~~a~-~~~v~~~i~~~~~~l~~~~~~l 363 (793)
.....++.+|++|+|+|+++...... ..++..+... ++|+++|+||+|+...+ .....++..++...+
T Consensus 87 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~------- 159 (194)
T 3reg_A 87 LRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKL------- 159 (194)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHH-------
T ss_pred HhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhc-------
Confidence 88888999999999999987532222 2233333333 68999999999997532 122233344443333
Q ss_pred Ccc-EEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 364 DFP-VIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 364 ~~P-vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
.++ ++++||++|. |++++++.|.+.+..
T Consensus 160 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 160 GCVAYIEASSVAKI----------GLNEVFEKSVDCIFS 188 (194)
T ss_dssp TCSCEEECBTTTTB----------SHHHHHHHHHHHHHC
T ss_pred CCCEEEEeecCCCC----------CHHHHHHHHHHHHHh
Confidence 344 8999999998 999999999887644
No 141
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.59 E-value=2.7e-15 Score=148.72 Aligned_cols=154 Identities=14% Similarity=0.158 Sum_probs=95.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|.+|+|||||+++|+........ .+++.......+.+++ ..+.||||||+.+|..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 84 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEY-----------------DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA 84 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSCC-----------------CTTCCEEEEEEEEETTEEEEEEEEECCC------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCcccc-----------------CCccceEEEEEEEECCEEEEEEEEECCChHHHHH
Confidence 48999999999999999999865211100 0011111122344444 5689999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
.....+..+|++++|+|+.+....+. ..++..+.. .++|+++|+||+|+.... ...+++.++....
T Consensus 85 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~------- 155 (190)
T 3con_A 85 MRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRT--VDTKQAHELAKSY------- 155 (190)
T ss_dssp -----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC--SCHHHHHHHHHHH-------
T ss_pred HHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCccc--CCHHHHHHHHHHc-------
Confidence 88889999999999999987532222 223333332 378999999999987522 1223333333322
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
.+|++++||++|. |++++++.|.+.+.
T Consensus 156 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 182 (190)
T 3con_A 156 GIPFIETSAKTRQ----------GVEDAFYTLVREIR 182 (190)
T ss_dssp TCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 3579999999998 99999999987664
No 142
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.58 E-value=1.7e-15 Score=153.93 Aligned_cols=158 Identities=17% Similarity=0.139 Sum_probs=104.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+...... ......|.+...... ...++ ..++||||||+.++..
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~~~~~~ 76 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGRFEK--------------NYNATVGAVNHPVTF-LDDQGNVIKFNVWDTAGQEKKAV 76 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCSTTC--------------EEETTTTEEEEEEEE-EBTTSCEEEEEEEEECSGGGTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccceeeEEEEE-EeCCCcEEEEEEEecCCchhhch
Confidence 489999999999999999998542110 001111222211111 11122 6799999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH-HHHHHHH---HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKAL---KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~---~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.....+..+|++|+|+|++++...+.. .++..+. ..+.|+++|+||+|+...+ ....++...+.. ...
T Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~-------~~~ 148 (218)
T 4djt_A 77 LKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQ-KISKKLVMEVLK-------GKN 148 (218)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-----CCHHHHHHHTT-------TCC
T ss_pred HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-ccCHHHHHHHHH-------HcC
Confidence 888889999999999999986443333 2223333 2368999999999997532 111122222211 235
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
++++++||++|. |++++++.|.+.+..
T Consensus 149 ~~~~~~Sa~~g~----------gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 149 YEYFEISAKTAH----------NFGLPFLHLARIFTG 175 (218)
T ss_dssp CEEEEEBTTTTB----------TTTHHHHHHHHHHHC
T ss_pred CcEEEEecCCCC----------CHHHHHHHHHHHHhc
Confidence 689999999998 999999999887654
No 143
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.58 E-value=3.7e-15 Score=144.38 Aligned_cols=155 Identities=19% Similarity=0.165 Sum_probs=95.0
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH-
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG- 288 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~- 288 (793)
+|+++|++|+|||||+++|++....... ....+.......+.+++ ..+.+|||||+.++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 67 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQGDHAH----------------EMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW 67 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC----------------------------CEEEEEEEETTEEEEEEEECCCCC------
T ss_pred EEEEECCCCCCHHHHHHHHHhccCcccc----------------cCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh
Confidence 7899999999999999999754221110 01112222233344444 6788999999998876
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCc-hhHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
.....++.+|++++|+|+++.... ....++..+.. .++|+++|+||+|+.+.+. ...++..++... .
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~-------~ 139 (169)
T 3q85_A 68 LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSRE-VSLEEGRHLAGT-------L 139 (169)
T ss_dssp --CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCC-SCHHHHHHHHHH-------T
T ss_pred hhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhccc-CCHHHHHHHHHH-------c
Confidence 344557889999999999873221 12233333333 2789999999999874321 112222322222 2
Q ss_pred CccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 364 ~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
.+|++++||++|. |++++++.|.+.+.
T Consensus 140 ~~~~~~~Sa~~~~----------~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 140 SCKHIETSAALHH----------NTRELFEGAVRQIR 166 (169)
T ss_dssp TCEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred CCcEEEecCccCC----------CHHHHHHHHHHHHH
Confidence 4679999999998 99999999987653
No 144
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.58 E-value=2.4e-15 Score=163.87 Aligned_cols=155 Identities=15% Similarity=0.125 Sum_probs=106.6
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 291 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~ 291 (793)
+|+++|++|+|||||+++|+..... .. . -|+......+.+++..++||||||+.+|.....
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~~------------~~-----~--pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 227 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEIV------------TT-----I--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 227 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCCE------------EE-----E--EETTEEEEEEEETTEEEEEEECC-----CCSHH
T ss_pred eEEEECCCCccHHHHHHHHhCCCCC------------Cc-----c--cccceEEEEEecCcEEEEEEECCCCHhHHHHHH
Confidence 7999999999999999999754210 00 0 133344456778899999999999999999999
Q ss_pred HHhhccCcEEEEEeCCCCCCch-hHHHHHHH-HH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCcc
Q psy1760 292 RILSMVDNVLLLIDAVEGPMPQ-TRFVTRKA-LK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 366 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~~~q-t~~~l~~~-~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~P 366 (793)
..++.+|++|+|+|+++..... ....+..+ .. .++|+|+|+||+|+.+... .+++.+.+..... ....+|
T Consensus 228 ~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~i~~~~~~~~~--~~~~~~ 302 (329)
T 3o47_A 228 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL--RHRNWY 302 (329)
T ss_dssp HHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTCTTC--CSSCEE
T ss_pred HHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC---HHHHHHHhchhhh--hcCCCE
Confidence 9999999999999998643322 22223222 22 3789999999999976532 2233333322111 123578
Q ss_pred EEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 367 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
++++||++|. |+++|++.|.+.+.
T Consensus 303 ~~~vSAk~g~----------gi~el~~~l~~~l~ 326 (329)
T 3o47_A 303 IQATCATSGD----------GLYEGLDWLSNQLR 326 (329)
T ss_dssp EEECBTTTTB----------THHHHHHHHHHHHT
T ss_pred EEEEECCCCc----------CHHHHHHHHHHHHH
Confidence 9999999998 99999999988764
No 145
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.58 E-value=3.7e-15 Score=149.23 Aligned_cols=159 Identities=16% Similarity=0.171 Sum_probs=103.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEe---ecCeEEEEecCCCcccch
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE---YNGTRINIIDTPGHADFG 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~---~~~~~i~iiDTPGh~df~ 287 (793)
.+|+++|.+|+|||||+++|.+..... ...+.+.......+. .....++||||||+.+|.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 83 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKMSPN-----------------ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFF 83 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCCCGG-----------------GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCCc-----------------ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHH
Confidence 589999999999999999886541110 011111112222222 245789999999999988
Q ss_pred HHH---HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHH-----cCCccEEEEecccCCCCCh-----hhhHhHHHHHHh
Q psy1760 288 GEV---ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK-----LGFKPIVVVNKIDRSNARP-----EWVVDATFDLFD 354 (793)
Q Consensus 288 ~ev---~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~-----~~ip~IvvINKiD~~~a~~-----~~v~~~i~~~~~ 354 (793)
... ...++.+|++|+|+|+++........+...+.. .++|+++|.||+|+...+. ..+..+..+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~ 163 (196)
T 3llu_A 84 DPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLA 163 (196)
T ss_dssp CTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHH
Confidence 777 788999999999999998633333333333333 3789999999999865311 111111122222
Q ss_pred hhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 355 KLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 355 ~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.... ....++++.+||++ . |++++++.|.+.+
T Consensus 164 ~~~~--~~~~~~~~e~Sa~~-~----------~v~~~f~~l~~~l 195 (196)
T 3llu_A 164 DAGL--EKLHLSFYLTSIYD-H----------SIFEAFSKVVQKL 195 (196)
T ss_dssp HTTC--TTSCEEEEEECTTS-T----------HHHHHHHHHHHHT
T ss_pred Hhhh--hcCCcceEEEEech-h----------hHHHHHHHHHHHh
Confidence 2111 13457899999999 8 8999999987654
No 146
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.58 E-value=2.3e-16 Score=158.27 Aligned_cols=157 Identities=18% Similarity=0.195 Sum_probs=100.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+..... .+..++++.......+.+++ +.++||||||+.+|..
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 97 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTYT----------------ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 97 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCCC----------------CHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC----------------CCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHH
Confidence 58999999999999999999754211 11122333344445555665 6799999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHHc---CCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~~---~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.....++.+|++|+|+|+++....+. ..++..+... ++|+++|+||+|+...+... .++...+.. ...
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~-~~~~~~~~~-------~~~ 169 (199)
T 3l0i_B 98 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVD-YTTAKEFAD-------SLG 169 (199)
T ss_dssp CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCC-SCC-CHHHH-------TTT
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCC-HHHHHHHHH-------HcC
Confidence 88888999999999999987533222 2333334333 68999999999997543110 111112211 224
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+|++++||++|. |+++++++|.+.+..
T Consensus 170 ~~~~~vSA~~g~----------gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 170 IPFLETSAKNAT----------NVEQSFMTMAAEIKK 196 (199)
T ss_dssp CCBCCCCC---H----------HHHHHHHHHTTTTTT
T ss_pred CeEEEEECCCCC----------CHHHHHHHHHHHHHH
Confidence 678999999998 999999999877643
No 147
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.4e-15 Score=153.92 Aligned_cols=158 Identities=16% Similarity=0.172 Sum_probs=105.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+....... ..+.++.......+.+++ ..+.||||||+..|..
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 77 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMD----------------SKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRA 77 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC----------------------CCSEEEEEEEETTEEEEEEEECCTTTTTTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCC----------------CCCcccceeEEEEEEECCEEEEEEEEECCCccchhh
Confidence 5899999999999999999986532110 011122222233455555 6899999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.+...++.+|++|+|+|+++....+. ..++..+.. .++|+++|+||+|+...+. ...++..++... ..
T Consensus 78 ~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~~~~-------~~ 149 (223)
T 3cpj_B 78 ITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRA-VPTEESKTFAQE-------NQ 149 (223)
T ss_dssp CCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCC-SCHHHHHHHHHH-------TT
T ss_pred hHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc-cCHHHHHHHHHH-------cC
Confidence 88888999999999999987533222 223334443 3788999999999965321 112233333222 24
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
++++++||++|. |+++++++|.+.+...
T Consensus 150 ~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 150 LLFTETSALNSE----------NVDKAFEELINTIYQK 177 (223)
T ss_dssp CEEEECCCC-CC----------CHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCC----------CHHHHHHHHHHHHHHH
Confidence 679999999998 9999999998877543
No 148
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.57 E-value=3.5e-15 Score=147.45 Aligned_cols=156 Identities=26% Similarity=0.319 Sum_probs=98.7
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCc--------
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH-------- 283 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh-------- 283 (793)
+|+++|++|+|||||+++|++.... ....+|+|..... +.+. .+++|||||+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~~~~~~~ 62 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKVR----------------RGKRPGVTRKIIE--IEWK--NHKIIDMPGFGFMMGLPK 62 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCS----------------SSSSTTCTTSCEE--EEET--TEEEEECCCBSCCTTSCH
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCc----------------cCCCCCccceeEE--EecC--CEEEEECCCccccccCCH
Confidence 7899999999999999999865211 1112244433222 2333 7899999995
Q ss_pred ---ccchHHHHHHhhc----cCcEEEEEeCCC-----------CCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhh
Q psy1760 284 ---ADFGGEVERILSM----VDNVLLLIDAVE-----------GPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWV 345 (793)
Q Consensus 284 ---~df~~ev~~~l~~----aD~allVVDa~~-----------g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v 345 (793)
..|.......++. +++++.|+|+.. +...++...+..+...++|+++|+||+|+...+ .+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~ 141 (190)
T 2cxx_A 63 EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEV 141 (190)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHH
Confidence 3344444444443 556666666643 222333445556666789999999999997654 222
Q ss_pred HhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 346 VDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 346 ~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
.+ ++...++........+++++||++|. |++++++.|.+.+..
T Consensus 142 ~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~----------~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 142 IN---FLAEKFEVPLSEIDKVFIPISAKFGD----------NIERLKNRIFEVIRE 184 (190)
T ss_dssp HH---HHHHHHTCCGGGHHHHEEECCTTTCT----------THHHHHHHHHHHHHH
T ss_pred HH---HHHHHhhhhhhccCCcEEEEecCCCC----------CHHHHHHHHHHhcch
Confidence 23 33333333211113468999999998 999999999887754
No 149
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.57 E-value=3.7e-15 Score=158.06 Aligned_cols=167 Identities=16% Similarity=0.189 Sum_probs=97.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+|+|+........... ......+++++......+.+++ ..++||||||+.++..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~ 80 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPG--------PSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD 80 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC-----------------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCC--------cccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccccc
Confidence 58999999999999999999765221111000 0001133444455555566665 4899999999855422
Q ss_pred -------HH-------HHHhhc-------------cCcEEEEEeCC-CCCCchhHHHHHHHHHcCCccEEEEecccCCCC
Q psy1760 289 -------EV-------ERILSM-------------VDNVLLLIDAV-EGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA 340 (793)
Q Consensus 289 -------ev-------~~~l~~-------------aD~allVVDa~-~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a 340 (793)
.+ ..++.. +|++++++++. ++..+....+++.+.. ++|+|+|+||+|+...
T Consensus 81 ~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 81 NSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTP 159 (274)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCH
Confidence 11 333333 77899988665 4788888888888877 8999999999998642
Q ss_pred -ChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCc
Q psy1760 341 -RPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 403 (793)
Q Consensus 341 -~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 403 (793)
......+++.+.+.. ..++++.+||+++. |++.+++.|.+.+|-..
T Consensus 160 ~e~~~~~~~i~~~l~~-------~~i~v~~~sa~~~~----------~~~~l~~~l~~~~p~~v 206 (274)
T 3t5d_A 160 EECQQFKKQIMKEIQE-------HKIKIYEFPETDDE----------EENKLVKKIKDRLPLAV 206 (274)
T ss_dssp HHHHHHHHHHHHHHHH-------TTCCCCCC---------------------CHHHHHTCSEEC
T ss_pred HHHHHHHHHHHHHHHH-------cCCeEEcCCCCCCh----------hHHHHHHHHhcCCCcEE
Confidence 122222333333322 24578889999987 88899999988876543
No 150
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=2.6e-15 Score=151.67 Aligned_cols=164 Identities=15% Similarity=0.111 Sum_probs=104.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+........ ....+.+. ...+.+++ ..+.||||||+.+|..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~~~~ 88 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFPEVY--------------VPTVFENY---VADIEVDGKQVELALWDTAGQEDYDR 88 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC---------------------CCEE---EEEEEETTEEEEEEEEECTTCTTCTT
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCCCcC--------------CCcccceE---EEEEEECCEEEEEEEEECCCcHHHHH
Confidence 48999999999999999999865321100 00001111 12233444 5789999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh--HHHHHHHHHc--CCccEEEEecccCCCCChhhhHhHHHHHHhh-h-----cc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT--RFVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDK-L-----CA 358 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt--~~~l~~~~~~--~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~-l-----~~ 358 (793)
.....++.+|++|+|+|+++....+. ..++..+... ++|+++|+||+|+.... ...+.+.+.... + ..
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~ 166 (207)
T 2fv8_A 89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE--HVRTELARMKQEPVRTDDGRA 166 (207)
T ss_dssp TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCH--HHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccc--cchhhhhhcccCCCCHHHHHH
Confidence 87788899999999999987422121 2334444443 78999999999997542 111111111000 0 00
Q ss_pred cccccCc-cEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCc
Q psy1760 359 TEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 403 (793)
Q Consensus 359 ~~~~l~~-Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 403 (793)
......+ +++++||++|. |+++|++.|.+.+..+.
T Consensus 167 ~~~~~~~~~~~~~SA~~g~----------gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 167 MAVRIQAYDYLECSAKTKE----------GVREVFETATRAALQKR 202 (207)
T ss_dssp HHHHTTCSEEEECCTTTCT----------THHHHHHHHHHHHHSCC
T ss_pred HHHhcCCCEEEEeeCCCCC----------CHHHHHHHHHHHHHHHh
Confidence 0001123 78999999998 99999999988775543
No 151
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.56 E-value=2.2e-15 Score=151.43 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=105.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|.+|+|||||+++|+........ ....+.+. .....+......+.||||||+.+|....
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 89 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGEFSEGY--------------DPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILP 89 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCC--------------CCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCC--------------CCccceEE-EEEEEECCEEEEEEEEECCCccchHHHH
Confidence 58999999999999999999865322110 01111122 2233334456889999999999998888
Q ss_pred HHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
...++.+|++|+|+|+++....+. ..++..+.. .++|+++|+||+|+...+.. ...+...+... ..+
T Consensus 90 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~~-------~~~ 161 (201)
T 3oes_A 90 YSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREV-QAVEGKKLAES-------WGA 161 (201)
T ss_dssp GGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCS-CHHHHHHHHHH-------HTC
T ss_pred HHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcccccc-CHHHHHHHHHH-------hCC
Confidence 888999999999999986422222 223333332 37899999999998753211 11222222222 245
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
|++.+||++|. |++++++.|.+.+...
T Consensus 162 ~~~~~Sa~~~~----------~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 162 TFMESSARENQ----------LTQGIFTKVIQEIARV 188 (201)
T ss_dssp EEEECCTTCHH----------HHHHHHHHHHHHHHHC
T ss_pred eEEEEeCCCCC----------CHHHHHHHHHHHHHhh
Confidence 79999999998 8999999998877543
No 152
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.56 E-value=4.6e-15 Score=148.62 Aligned_cols=159 Identities=17% Similarity=0.078 Sum_probs=103.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+...... ....++.......+.+++ +.+.||||||+.+|..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 83 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNGYPT-----------------EYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDK 83 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-------------------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-----------------CCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHH
Confidence 589999999999999999998652110 000111111123344555 4677999999999888
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH--HHHHHHHHc--CCccEEEEecccCCCCCh-----------hhhHhHHHHHH
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALKL--GFKPIVVVNKIDRSNARP-----------EWVVDATFDLF 353 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~~--~ip~IvvINKiD~~~a~~-----------~~v~~~i~~~~ 353 (793)
.....+..+|++|+|+|+++....... .++..+... ++|+++|+||+|+..... ....++...+.
T Consensus 84 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 163 (201)
T 2q3h_A 84 LRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLA 163 (201)
T ss_dssp SGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred HhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHH
Confidence 777789999999999999874322222 233333332 789999999999975310 00112222222
Q ss_pred hhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 354 DKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 354 ~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
..++ ..+++.+||++|. |++++++.|.+.+..+
T Consensus 164 ~~~~------~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 164 EEIK------AASYIECSALTQK----------NLKEVFDAAIVAGIQY 196 (201)
T ss_dssp HHHT------CSEEEECCTTTCT----------THHHHHHHHHHHHHHH
T ss_pred HhcC------CcEEEEEecCCCC----------CHHHHHHHHHHHHhcc
Confidence 2221 1379999999998 9999999998876543
No 153
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.56 E-value=3e-15 Score=151.47 Aligned_cols=160 Identities=13% Similarity=0.063 Sum_probs=105.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec--CeEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~--~~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+......... .+ .|... ...+.++ ...+.||||||+.+|..
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~~~~~~----~t----------~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~~~~ 72 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYI----PT----------VFDNF---SANVAVDGQIVNLGLWDTAGQEDYSR 72 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCC----CS----------SCCCE---EEEEECSSCEEEEEEECCCCCCCCCC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCC----Cc----------cceeE---EEEEEECCEEEEEEEEECCCcHHHHH
Confidence 489999999999999999998653211000 00 01111 1223333 36899999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH--HHHHHHHHc--CCccEEEEecccCCCCChh-------hhHhHHHHHHhhhc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALKL--GFKPIVVVNKIDRSNARPE-------WVVDATFDLFDKLC 357 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~~--~ip~IvvINKiD~~~a~~~-------~v~~~i~~~~~~l~ 357 (793)
.....++.+|++|+|+|+++....+.. .++..+... ++|+++|+||+|+...+.. ...++..++...++
T Consensus 73 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (212)
T 2j0v_A 73 LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG 152 (212)
T ss_dssp --CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC
Confidence 888889999999999999874322221 233444443 7899999999998654210 01233333332222
Q ss_pred ccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCc
Q psy1760 358 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 403 (793)
Q Consensus 358 ~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 403 (793)
. .+++++||++|. |++++++.|.+.+..+.
T Consensus 153 ~------~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 153 A------AAYIECSSKTQQ----------NVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp C------SEEEECCTTTCT----------THHHHHHHHHHHHHCC-
T ss_pred C------ceEEEccCCCCC----------CHHHHHHHHHHHHhhhh
Confidence 1 378999999998 99999999988876554
No 154
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.55 E-value=3.1e-15 Score=150.40 Aligned_cols=155 Identities=17% Similarity=0.109 Sum_probs=102.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+.......... + .+.+. ...+.+++ ..+.||||||+.+|..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~----t----------~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~ 88 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVP----T----------VFENY---IADIEVDGKQVELALWDTAGQEDYDR 88 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSSCCC----S----------SCCCC---EEEEEETTEEEEEEEECCCCSGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCcccCC----c----------ccceE---EEEEEECCEEEEEEEEECCCchhHHH
Confidence 5899999999999999999986532111000 0 01111 11233444 5889999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh--HHHHHHHHHc--CCccEEEEecccCCCCChh-hh----------HhHHHHHH
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT--RFVTRKALKL--GFKPIVVVNKIDRSNARPE-WV----------VDATFDLF 353 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt--~~~l~~~~~~--~ip~IvvINKiD~~~a~~~-~v----------~~~i~~~~ 353 (793)
.....++.+|++|+|+|+++....+. ..++..+... +.|+++|+||+|+...... +. .++..++.
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 168 (201)
T 2gco_A 89 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMA 168 (201)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHH
Confidence 88888999999999999987422222 2334444444 7899999999999754210 00 01111111
Q ss_pred hhhcccccccCc-cEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 354 DKLCATEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 354 ~~l~~~~~~l~~-Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.. ..+ +++++||++|. |++++++.|.+.+
T Consensus 169 ~~-------~~~~~~~~~SA~~g~----------gi~~l~~~i~~~~ 198 (201)
T 2gco_A 169 NR-------ISAFGYLECSAKTKE----------GVREVFEMATRAG 198 (201)
T ss_dssp HH-------TTCSEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred Hh-------CCCcEEEEeeCCCCC----------CHHHHHHHHHHHH
Confidence 11 123 78999999998 9999999987653
No 155
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.55 E-value=2.3e-14 Score=158.00 Aligned_cols=163 Identities=23% Similarity=0.202 Sum_probs=105.7
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccc-----
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF----- 286 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df----- 286 (793)
.|+|+|++|+|||||+++|++... ..+...+.|++.....+.+++..+.++||||+...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~----------------~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~l 244 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ----------------KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQI 244 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc----------------cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHH
Confidence 589999999999999999986521 12334567777777888899999999999997331
Q ss_pred h---HHHHHHhhccCcEEEEEeCCCCC--C-chhHHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhc
Q psy1760 287 G---GEVERILSMVDNVLLLIDAVEGP--M-PQTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC 357 (793)
Q Consensus 287 ~---~ev~~~l~~aD~allVVDa~~g~--~-~qt~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~ 357 (793)
. ..+...+..+|++++|+|+++.. . .+...+...+.. .+.|+|+|.||+|+.+.......+.+.++...+.
T Consensus 245 ve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~ 324 (364)
T 2qtf_A 245 VDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELY 324 (364)
T ss_dssp HHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhc
Confidence 1 11233478899999999998753 1 122222233333 4678999999999976432222222222222221
Q ss_pred ccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcC
Q psy1760 358 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD 404 (793)
Q Consensus 358 ~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~ 404 (793)
. ...+++++||++|. |++.|++.|.+.++.|.+
T Consensus 325 ~----~~~~~~~~SA~~g~----------gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 325 S----PIFDVIPISALKRT----------NLELLRDKIYQLATQLSL 357 (364)
T ss_dssp S----CEEEEEECBTTTTB----------SHHHHHHHHHHHHHHHC-
T ss_pred C----CCCcEEEEECCCCc----------CHHHHHHHHHHHhcccCC
Confidence 1 12357999999998 999999999888776554
No 156
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.55 E-value=4.7e-15 Score=150.80 Aligned_cols=157 Identities=14% Similarity=0.063 Sum_probs=88.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+........ ..++.......+.+++ ..+.||||||+.+|..
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 97 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAFPESY-----------------TPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDR 97 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC------------------------CCCCCEEEEEEEEETTEEEEEEEEEC--------
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCC-----------------CCccceeEEEEEEECCEEEEEEEEECCCchhhhH
Confidence 48999999999999999999854211000 0001111112233443 4789999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH--HHHHHHHH--cCCccEEEEecccCCCCChh-hh----------HhHHHHHH
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALK--LGFKPIVVVNKIDRSNARPE-WV----------VDATFDLF 353 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~--~~ip~IvvINKiD~~~a~~~-~v----------~~~i~~~~ 353 (793)
.....++.+|++|+|+|+++....+.. .++..+.. .++|+++|+||+|+...+.. +. .++..++.
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 177 (214)
T 2j1l_A 98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMA 177 (214)
T ss_dssp -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHH
Confidence 888889999999999999874322222 23333333 37899999999999764211 00 11112221
Q ss_pred hhhcccccccCc-cEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 354 DKLCATEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 354 ~~l~~~~~~l~~-Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
.. ..+ +++++||++|. |++++++.|.+.+..
T Consensus 178 ~~-------~~~~~~~~~SA~~g~----------gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 178 RS-------VGAVAYLECSARLHD----------NVHAVFQEAAEVALS 209 (214)
T ss_dssp HH-------TTCSEEEECBTTTTB----------SHHHHHHHHHHHHHH
T ss_pred Hh-------cCCCEEEEecCCCCC----------CHHHHHHHHHHHHHH
Confidence 11 233 79999999998 999999999876643
No 157
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.55 E-value=4.4e-15 Score=151.26 Aligned_cols=160 Identities=14% Similarity=0.103 Sum_probs=106.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|.+|+|||||+++|+......... ...|.+. .....+....+.+.||||||+.+|....
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~--------------~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 92 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDCYPETYV--------------PTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVR 92 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCC--------------CCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTG
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCcC--------------CeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHH
Confidence 589999999999999999998653211100 0011121 1122333445789999999999998888
Q ss_pred HHHhhccCcEEEEEeCCCCCCchh--HHHHHHHHHc--CCccEEEEecccCCCCC-----------hhhhHhHHHHHHhh
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQT--RFVTRKALKL--GFKPIVVVNKIDRSNAR-----------PEWVVDATFDLFDK 355 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt--~~~l~~~~~~--~ip~IvvINKiD~~~a~-----------~~~v~~~i~~~~~~ 355 (793)
...++.+|++|+|+|+++...... ..++..+... ++|+++|.||+|+.... .....++...+...
T Consensus 93 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 172 (214)
T 3q3j_B 93 PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQ 172 (214)
T ss_dssp GGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred HHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHH
Confidence 888999999999999987533222 2344444444 78999999999997531 01112222333222
Q ss_pred hcccccccCc-cEEEeecCCCCcccccccccCC-chhhHHHHHhhcCcC
Q psy1760 356 LCATEEQLDF-PVIYTSALHGYANENSKARQGN-MIPLFEAILKYVPVH 402 (793)
Q Consensus 356 l~~~~~~l~~-Pvi~~SA~~g~~~~~~~~~~~g-i~~Ll~~I~~~lp~p 402 (793)
+ .+ +++.+||++|. | ++++++.|.+.+..+
T Consensus 173 ~-------~~~~~~e~SA~~g~----------g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 173 L-------GAEIYLEGSAFTSE----------KSIHSIFRTASMLCLNK 204 (214)
T ss_dssp H-------TCSEEEECCTTTCH----------HHHHHHHHHHHHHHHC-
T ss_pred c-------CCCEEEEeccCCCc----------ccHHHHHHHHHHHHhcc
Confidence 2 34 79999999998 7 999999998876443
No 158
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.55 E-value=1.1e-14 Score=157.01 Aligned_cols=159 Identities=13% Similarity=0.186 Sum_probs=107.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEee-cCeEEEEecCCCcccc---
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGHADF--- 286 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~-~~~~i~iiDTPGh~df--- 286 (793)
.+|+++|.+|+|||||+++|+..... ......|.|+......+.+ ++..++||||||+.+|
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~---------------~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 68 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSA---------------FDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMEN 68 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCT---------------GGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC---------------ccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhh
Confidence 47999999999999999999765211 1222445666666666665 5789999999999988
Q ss_pred --hHHHHHHhhccCcEEEEEeCCCCCCchhHHHH----HHHHH--cCCccEEEEecccCCCCChh-----hhHhHHHHHH
Q psy1760 287 --GGEVERILSMVDNVLLLIDAVEGPMPQTRFVT----RKALK--LGFKPIVVVNKIDRSNARPE-----WVVDATFDLF 353 (793)
Q Consensus 287 --~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l----~~~~~--~~ip~IvvINKiD~~~a~~~-----~v~~~i~~~~ 353 (793)
.......++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+...+.. ...+++.++.
T Consensus 69 ~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~ 148 (307)
T 3r7w_A 69 YFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETS 148 (307)
T ss_dssp HHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHH
Confidence 45566678899999999999986544433222 22222 27899999999999752211 1123333333
Q ss_pred hhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 354 DKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 354 ~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
..++.. .+|++.+||++ . ++.+++..++..+
T Consensus 149 ~~~g~~----~~~~~~tSa~~-~----------~i~e~~~~iv~~l 179 (307)
T 3r7w_A 149 SEFGFP----NLIGFPTSIWD-E----------SLYKAWSQIVCSL 179 (307)
T ss_dssp HTTTCC----SCEEEECCTTS-S----------HHHHHHHHHHHTT
T ss_pred HHcCCC----CeEEEEeeecC-C----------hHHHHHHHHHHHH
Confidence 333321 36899999998 4 5666666665544
No 159
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.54 E-value=1.3e-14 Score=144.14 Aligned_cols=150 Identities=19% Similarity=0.165 Sum_probs=100.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|.+|+|||||+++|+....... ..+ . +.. ....+.+++ +.+.||||||+.+|.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~~~~~-----------~~~---t-~~~---~~~~~~~~~~~~~l~i~Dt~G~~~~~- 81 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGTYVQE-----------ESP---E-GGR---FKKEIVVDGQSYLLLIRDEGGPPELQ- 81 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSSCCCC-----------CCT---T-CEE---EEEEEEETTEEEEEEEEECSSSCCHH-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC-----------cCC---C-cce---EEEEEEECCEEEEEEEEECCCChhhh-
Confidence 4899999999999999999986522110 000 0 111 113444555 567889999998886
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH----cCCccEEEEecccCCCCCh-hhhHhHHHHHHhhhcccccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARP-EWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~ip~IvvINKiD~~~a~~-~~v~~~i~~~~~~l~~~~~~ 362 (793)
.++.+|++++|+|+++....+. ..++..+.. .++|+++|.||+|+..... ....++..++...++
T Consensus 82 ----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~----- 152 (184)
T 3ihw_A 82 ----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLK----- 152 (184)
T ss_dssp ----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTT-----
T ss_pred ----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcC-----
Confidence 7788999999999987543333 334444443 3678999999999853211 112233333333322
Q ss_pred cCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 363 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 363 l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.++++.+||++|. |++++++.|.+.+
T Consensus 153 -~~~~~e~Sa~~~~----------gv~~lf~~l~~~i 178 (184)
T 3ihw_A 153 -RCTYYETCATYGL----------NVERVFQDVAQKV 178 (184)
T ss_dssp -TCEEEEEBTTTTB----------THHHHHHHHHHHH
T ss_pred -CCeEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 2578999999998 9999999987755
No 160
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.54 E-value=2.1e-14 Score=143.51 Aligned_cols=157 Identities=20% Similarity=0.209 Sum_probs=101.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+......... ...+... .....+......+.||||||+.+ ....
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~--------------~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~ 92 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKRFIWEYD--------------PTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQR 92 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCC--------------TTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccC--------------CCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccch
Confidence 489999999999999999998753211000 0011111 11122222346799999999988 6667
Q ss_pred HHHhhccCcEEEEEeCCCCCCc-hhHHHHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMP-QTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
...++.+|++++|+|+++.... ....++..+. ..++|+++|+||+|+...+. ...++..++.... .+
T Consensus 93 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~-v~~~~~~~~~~~~-------~~ 164 (196)
T 2atv_A 93 EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQ-VSTEEGEKLATEL-------AC 164 (196)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC-SCHHHHHHHHHHH-------TS
T ss_pred hhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccc-cCHHHHHHHHHHh-------CC
Confidence 7889999999999999863211 1222233333 25789999999999975321 1122333332222 46
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
+++++||++|. .|++++++.|.+.+.
T Consensus 165 ~~~~~Sa~~g~---------~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 165 AFYECSACTGE---------GNITEIFYELCREVR 190 (196)
T ss_dssp EEEECCTTTCT---------TCHHHHHHHHHHHHH
T ss_pred eEEEECCCcCC---------cCHHHHHHHHHHHHH
Confidence 79999999984 168888888877653
No 161
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.54 E-value=2.4e-14 Score=143.67 Aligned_cols=159 Identities=19% Similarity=0.158 Sum_probs=104.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|.+|+|||||+++|.+....... ..+++.+.....+.+++ ..+.+|||||+.++..
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~ 87 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAH----------------EPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGG 87 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEECCGGG----------------TTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGH
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCCccC----------------CCCcccceEEEEEEECCEEEEEEEEecCCCccchh
Confidence 48999999999999999999754322110 01112112222334444 5678899999988765
Q ss_pred -HHHHHhhccCcEEEEEeCCCCCCc-hhHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccc
Q psy1760 289 -EVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 289 -ev~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~ 362 (793)
.....++.+|++|+|+|+++.... ....++..+.. .++|+|+|.||+|+...+. ...++..++...
T Consensus 88 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~a~~------- 159 (195)
T 3cbq_A 88 WLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSRE-VSLEEGRHLAGT------- 159 (195)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCC-SCHHHHHHHHHH-------
T ss_pred hhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCC-cCHHHHHHHHHH-------
Confidence 445568889999999999863221 12233333333 3789999999999975431 112233332222
Q ss_pred cCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCc
Q psy1760 363 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 403 (793)
Q Consensus 363 l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 403 (793)
..++++.+||++|. |++++++.|.+.+....
T Consensus 160 ~~~~~~e~Sa~~~~----------~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 160 LSCKHIETSAALHH----------NTRELFEGAVRQIRLRR 190 (195)
T ss_dssp TTCEEEEEBTTTTB----------SHHHHHHHHHHHHHTTC
T ss_pred hCCEEEEEcCCCCC----------CHHHHHHHHHHHHHHhc
Confidence 23578999999998 99999999988876543
No 162
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.53 E-value=1.8e-14 Score=141.14 Aligned_cols=151 Identities=17% Similarity=0.160 Sum_probs=97.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+++|.+|+|||||+++|+...... . ....|... ...+.+++ ..+.||||||+..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~-------------~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~--- 66 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQV--L-------------EKTESEQY---KKEMLVDGQTHLVLIREEAGAPD--- 66 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCC--C-------------SSCSSSEE---EEEEEETTEEEEEEEEECSSSCC---
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--c-------------CCCcceeE---EEEEEECCEEEEEEEEECCCCch---
Confidence 489999999999999999998653211 0 00011111 12233344 5789999999977
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhHHH-HHHHHH------cCCccEEEEecccCCCCCh-hhhHhHHHHHHhhhcccc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTRFV-TRKALK------LGFKPIVVVNKIDRSNARP-EWVVDATFDLFDKLCATE 360 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~~~-l~~~~~------~~ip~IvvINKiD~~~a~~-~~v~~~i~~~~~~l~~~~ 360 (793)
...++.+|++|+|+|+++....+.... +..+.. .++|+++|.||+|+..... ....++..++.....
T Consensus 67 --~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~--- 141 (178)
T 2iwr_A 67 --AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMK--- 141 (178)
T ss_dssp --HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHS---
T ss_pred --hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhc---
Confidence 356788999999999987432222222 112222 3689999999999842111 111233333332221
Q ss_pred cccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 361 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 361 ~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
.+|++.+||++|. |++++++.|.+.+.
T Consensus 142 ---~~~~~~~Sa~~~~----------~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 142 ---RCSYYETXATYGL----------NVDRVFQEVAQKVV 168 (178)
T ss_dssp ---SEEEEEEBTTTTB----------THHHHHHHHHHHHH
T ss_pred ---CCeEEEEeccccC----------CHHHHHHHHHHHHH
Confidence 3579999999998 99999999877653
No 163
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.52 E-value=6.6e-15 Score=145.64 Aligned_cols=158 Identities=15% Similarity=0.083 Sum_probs=100.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+......... ...+... .....+......+.||||||+.+|....
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~--------------~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 72 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCFPENYV--------------PTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVR 72 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCC--------------CCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCC--------------CccceeE-EEEEEECCEEEEEEEEECCCChhhhhhH
Confidence 489999999999999999998652211000 0001111 1111222234678999999999988777
Q ss_pred HHHhhccCcEEEEEeCCCCCCchhH--HHHHHHHH--cCCccEEEEecccCCCCCh-----------hhhHhHHHHHHhh
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALK--LGFKPIVVVNKIDRSNARP-----------EWVVDATFDLFDK 355 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~--~~ip~IvvINKiD~~~a~~-----------~~v~~~i~~~~~~ 355 (793)
...++.+|++|+|+|+++....+.. .++..+.. .+.|+++|.||+|+..... .-..++..++...
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 152 (184)
T 1m7b_A 73 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ 152 (184)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHH
Confidence 7788999999999999874322221 22233333 3789999999999974310 0011222233222
Q ss_pred hcccccccCccEEEeecC-CCCcccccccccCCchhhHHHHHhhc
Q psy1760 356 LCATEEQLDFPVIYTSAL-HGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 356 l~~~~~~l~~Pvi~~SA~-~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
++ ..|++.+||+ +|. |++++++.|.+.+
T Consensus 153 ~~------~~~~~e~Sa~~~~~----------gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 153 IG------AATYIECSALQSEN----------SVRDIFHVATLAC 181 (184)
T ss_dssp HT------CSEEEECBTTTBHH----------HHHHHHHHHHHHH
T ss_pred cC------CcEEEEeeecCCCc----------CHHHHHHHHHHHH
Confidence 22 2579999999 576 8999999887654
No 164
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.28 E-value=9.3e-16 Score=154.36 Aligned_cols=159 Identities=13% Similarity=0.089 Sum_probs=101.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeee--EEeecCeEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNC--SIEYNGTRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~--~~~~~~~~i~iiDTPGh~df~~ 288 (793)
.+|+++|.+|+|||||+++|+....... ...++...... .+......+.||||||+.+|..
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 93 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTNAFPGE-----------------YIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR 93 (204)
Confidence 4899999999999999999975421100 00111111111 2222345677999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH--HHHHHHHHc--CCccEEEEecccCCCCChhhhHhHHHHH----H--hhhcc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDL----F--DKLCA 358 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~~--~ip~IvvINKiD~~~a~~~~v~~~i~~~----~--~~l~~ 358 (793)
.....++.+|++|+|+|+++....+.. .++..+... ++|+++|+||+|+...+. ..+.+.+. . .....
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~ 171 (204)
T 3th5_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD--TIEKLKEKKLTPITYPQGLA 171 (204)
Confidence 888889999999999999876433332 333444433 789999999999975421 11111000 0 00000
Q ss_pred cccccCc-cEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 359 TEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 359 ~~~~l~~-Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
......+ |++++||++|. |++++++.|.+.
T Consensus 172 ~~~~~~~~~~~~vSA~~g~----------gi~~l~~~l~~~ 202 (204)
T 3th5_A 172 MAKEIGAVKYLECSALTQR----------GLKTVFDEAIRA 202 (204)
Confidence 1112234 78999999998 888899888654
No 165
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.51 E-value=2.5e-14 Score=164.34 Aligned_cols=157 Identities=13% Similarity=0.101 Sum_probs=112.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|.+|+|||||+++|+...... . ..|+......+.++++.++||||||+.+|....
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~~~---------------~----~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 383 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQSVT---------------T----IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 383 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCC---------------C----CCCSSEEEEEEESSSCEEEEEEECCCGGGSGGG
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCC---------------c----CCccceeEEEEEeCCEEEEEEECCCcHHHHHHH
Confidence 589999999999999999998653110 0 013334445677889999999999999999888
Q ss_pred HHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 365 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~ 365 (793)
..+++.+|++|+|+|+++....+. ...+..+.. .++|+|+|+||+|+..... .+++.+.+..... ....+
T Consensus 384 ~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~---~~~~~~~~~~~~~--~~~~~ 458 (497)
T 3lvq_E 384 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEIQEKLGLTRI--RDRNW 458 (497)
T ss_dssp GGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCC---HHHHHHHTTCTTC--CSSCE
T ss_pred HHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCC---HHHHHHHhchhhh--hcCCe
Confidence 889999999999999987532222 223333322 4789999999999976432 2233332221111 12346
Q ss_pred cEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 366 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 366 Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
+++++||++|. |+++++++|.+.+..
T Consensus 459 ~~~~~SA~~g~----------gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 459 YVQPSCATSGD----------GLYEGLTWLTSNYKS 484 (497)
T ss_dssp EEEECBTTTTB----------THHHHHHHHHHHCC-
T ss_pred EEEEEECCCCC----------CHHHHHHHHHHHHHh
Confidence 89999999998 999999999887754
No 166
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.51 E-value=2.3e-14 Score=142.45 Aligned_cols=155 Identities=15% Similarity=0.135 Sum_probs=99.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|.+|+|||||+++|+........ . ...+.+. .....+......+.||||||+.+|.. +
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~~~~~~----~----------~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~-~ 85 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKRFISEY----D----------PNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRN-C 85 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSCC----C----------TTCCEEE-EEEEEETTEEEEEEEEECCC---CCC-T
T ss_pred EEEEEECCCCCcHHHHHHHHHhCCCCccc----C----------CCcccee-eEEEEECCEEEEEEEEECCCCCcchh-H
Confidence 48999999999999999999865311100 0 0011111 11122223346788999999988866 4
Q ss_pred HHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHH------cCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 291 ERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 291 ~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~------~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
.+.++.+|++|+|+|+++....+ ...++..+.. .++|+++|+||+|+...+. ...++..++...+
T Consensus 86 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~~~~~------- 157 (187)
T 3c5c_A 86 ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ-VTKAEGVALAGRF------- 157 (187)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS-SCHHHHHHHHHHH-------
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc-cCHHHHHHHHHHc-------
Confidence 67889999999999998642222 1223333333 4789999999999965321 1123333333322
Q ss_pred CccEEEeec-CCCCcccccccccCCchhhHHHHHhhc
Q psy1760 364 DFPVIYTSA-LHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 364 ~~Pvi~~SA-~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.++++.+|| ++|. |++++++.|.+.+
T Consensus 158 ~~~~~e~Sa~~~g~----------gv~~lf~~l~~~i 184 (187)
T 3c5c_A 158 GCLFFEVSACLDFE----------HVQHVFHEAVREA 184 (187)
T ss_dssp TCEEEECCSSSCSH----------HHHHHHHHHHHHH
T ss_pred CCcEEEEeecCccc----------cHHHHHHHHHHHH
Confidence 357999999 8988 8999999987765
No 167
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.51 E-value=8.9e-15 Score=159.86 Aligned_cols=156 Identities=18% Similarity=0.228 Sum_probs=107.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC-eEEEEecCCCccc----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-TRINIIDTPGHAD---- 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~-~~i~iiDTPGh~d---- 285 (793)
..|+++|.+|+|||||+++|+.....+ +....+|+......+.+++ ..+.|+||||+.+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i----------------~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~ 222 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKI----------------ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ 222 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEE----------------SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCcc----------------ccCCccccCceEEEEEeCCCceEEEecCCCCcccccc
Confidence 368999999999999999997652111 1223445555556677775 8999999999643
Q ss_pred ---chHHHHHHhhccCcEEEEEeCCCC----CCchhHHHHHHHHH-----cCCccEEEEecccCCCCChhhhHhHHHHHH
Q psy1760 286 ---FGGEVERILSMVDNVLLLIDAVEG----PMPQTRFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLF 353 (793)
Q Consensus 286 ---f~~ev~~~l~~aD~allVVDa~~g----~~~qt~~~l~~~~~-----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~ 353 (793)
+.....+.+..+|++|+|+|+++. +..+...++..+.. .++|+++|+||+|+... .+..+++.+.
T Consensus 223 ~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~e~~~~l~~~- 299 (342)
T 1lnz_A 223 GVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AENLEAFKEK- 299 (342)
T ss_dssp TTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HHHHHHHHHH-
T ss_pred cchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--HHHHHHHHHH-
Confidence 445556667779999999999762 22222334445544 36899999999999753 2222333222
Q ss_pred hhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 354 DKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 354 ~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
+.. ..+++++||+++. |+++|+++|.+.+...
T Consensus 300 --l~~-----~~~v~~iSA~tg~----------gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 300 --LTD-----DYPVFPISAVTRE----------GLRELLFEVANQLENT 331 (342)
T ss_dssp --CCS-----CCCBCCCSSCCSS----------TTHHHHHHHHHHHTSC
T ss_pred --hhc-----CCCEEEEECCCCc----------CHHHHHHHHHHHHhhC
Confidence 211 1578999999998 9999999998887643
No 168
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.50 E-value=1.2e-13 Score=152.08 Aligned_cols=154 Identities=22% Similarity=0.202 Sum_probs=104.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH--
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG-- 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~-- 288 (793)
..++++|++|+|||||+++|++.... .....+.|.......+.+++..+.+|||||+.++..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 231 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKPE----------------IASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISE 231 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCCE----------------EECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc----------------cCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhh
Confidence 47899999999999999999765211 111223444444556667788999999999866431
Q ss_pred ------H-HHHHhhccCcEEEEEeCCCCC--Cchh-HHHHHHHHH-c-CCccEEEEecccCCCCChhhhHhHHHHHHhhh
Q psy1760 289 ------E-VERILSMVDNVLLLIDAVEGP--MPQT-RFVTRKALK-L-GFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 356 (793)
Q Consensus 289 ------e-v~~~l~~aD~allVVDa~~g~--~~qt-~~~l~~~~~-~-~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l 356 (793)
. +......+|.+|+|+|++... .... ..++..+.. . +.|+|+|+||+|+.... . +++..+.+.
T Consensus 232 ~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~--~-~~~~~~~~~-- 306 (357)
T 2e87_A 232 RNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEE--N-IKRLEKFVK-- 306 (357)
T ss_dssp SCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHH--H-HHHHHHHHH--
T ss_pred hhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChH--H-HHHHHHHHH--
Confidence 1 111234689999999987643 2232 234444433 2 78999999999997531 1 233333322
Q ss_pred cccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 357 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 357 ~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
...+|++++||++|. |+++|+++|.+.+.
T Consensus 307 -----~~~~~~~~iSA~~g~----------gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 307 -----EKGLNPIKISALKGT----------GIDLVKEEIIKTLR 335 (357)
T ss_dssp -----HTTCCCEECBTTTTB----------THHHHHHHHHHHHH
T ss_pred -----hcCCCeEEEeCCCCc----------CHHHHHHHHHHHHH
Confidence 124689999999998 99999999987764
No 169
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.49 E-value=6.7e-14 Score=143.28 Aligned_cols=157 Identities=20% Similarity=0.191 Sum_probs=104.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec--CeEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~--~~~i~iiDTPGh~df~~ 288 (793)
..|+++|.+++|||||+++++...... +..+.+..+.....+..+ .+.+.||||+|+..|..
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~----------------~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~ 77 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDN----------------TYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS 77 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC--------------------------CEEEEEECSSCEEEEEEECCSCTTTCGG
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCC----------------CcCCccceEEEEEEEEecceEEEEEEEECCCchhhhh
Confidence 379999999999999999998542110 001111112222223333 36788999999999999
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCc-hhHHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.....++.+|++++|+|.++...- ....++..+.. .++|+|+|.||+|+...+. -..++..++...+ +
T Consensus 78 l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~-V~~~e~~~~a~~~-------~ 149 (216)
T 4dkx_A 78 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQ-VSIEEGERKAKEL-------N 149 (216)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCC-SCHHHHHHHHHHH-------T
T ss_pred HHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCc-ccHHHHhhHHHHh-------C
Confidence 999999999999999999864222 22234444332 4678899999999975431 1123333333222 4
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
++++.+||++|. |++++|+.|.+.++.
T Consensus 150 ~~~~e~SAktg~----------nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 150 VMFIETSAKAGY----------NVKQLFRRVAAALPG 176 (216)
T ss_dssp CEEEEEBTTTTB----------SHHHHHHHHHHHC--
T ss_pred CeeEEEeCCCCc----------CHHHHHHHHHHHHHh
Confidence 578999999998 999999999888764
No 170
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.49 E-value=1.5e-14 Score=146.39 Aligned_cols=156 Identities=15% Similarity=0.099 Sum_probs=100.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec--CeEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~--~~~i~iiDTPGh~df~~ 288 (793)
.+|+++|.+|+|||||+++|+......... ...+.+. ...+.++ ...+.||||||+.+|..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~--------------~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~ 91 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCFPENYV--------------PTVFENY---TASFEIDTQRIELSLWDTSGSPYYDN 91 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCC--------------CCSEEEE---EEEEESSSSEEEEEEEEECCSGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcC--------------CccceeE---EEEEEECCEEEEEEEEeCCCcHhhhH
Confidence 589999999999999999998652211000 0001111 1123333 46899999999999887
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh--HHHHHHHHH--cCCccEEEEecccCCCCCh-----------hhhHhHHHHHH
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT--RFVTRKALK--LGFKPIVVVNKIDRSNARP-----------EWVVDATFDLF 353 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt--~~~l~~~~~--~~ip~IvvINKiD~~~a~~-----------~~v~~~i~~~~ 353 (793)
.....++.+|++|+|+|+++...... ..++..+.. .+.|+++|.||+|+..... .-..++..++.
T Consensus 92 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 171 (205)
T 1gwn_A 92 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA 171 (205)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHH
Confidence 77778899999999999987432222 123333333 3789999999999974310 00112222332
Q ss_pred hhhcccccccCccEEEeecC-CCCcccccccccCCchhhHHHHHhhc
Q psy1760 354 DKLCATEEQLDFPVIYTSAL-HGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 354 ~~l~~~~~~l~~Pvi~~SA~-~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
..++ ..+++++||+ +|. |++++++.|.+.+
T Consensus 172 ~~~~------~~~~~e~SAk~~~~----------gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 172 KQIG------AATYIECSALQSEN----------SVRDIFHVATLAC 202 (205)
T ss_dssp HHHT------CSEEEECCTTTCHH----------HHHHHHHHHHHHH
T ss_pred HHcC------CCEEEEeeeccCCc----------CHHHHHHHHHHHH
Confidence 2222 2478999999 576 8999999887653
No 171
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.49 E-value=3.3e-14 Score=156.72 Aligned_cols=194 Identities=19% Similarity=0.257 Sum_probs=96.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCe--EEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT--RINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~--~i~iiDTPGh~df~~ 288 (793)
.+|+++|++|+|||||+++|+.... +.. ..++....+..+++++......+.+++. .+++|||||+.++..
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~-~~~------~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~ 110 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDL-YPE------RVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAIN 110 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC----------------------CEEEEEEEEC----CEEEEEEEEC---------
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCC-CCC------CcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCc
Confidence 5899999999999999999875421 110 0111111122234444443444445554 789999999955433
Q ss_pred H-------HH-------HHhhcc-------------CcEEEEEeC-CCCCCchhHHHHHHHHHcCCccEEEEecccCCCC
Q psy1760 289 E-------VE-------RILSMV-------------DNVLLLIDA-VEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA 340 (793)
Q Consensus 289 e-------v~-------~~l~~a-------------D~allVVDa-~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a 340 (793)
. +. .+++.+ |+++++|++ .++.......+++.+ ..++|+|+|+||+|+...
T Consensus 111 ~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 111 CRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -----CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECCSSSCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEECCCCCCH
Confidence 2 22 333332 457888876 455555555555544 467899999999999753
Q ss_pred ChhhhH---hHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEE
Q psy1760 341 RPEWVV---DATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISL 417 (793)
Q Consensus 341 ~~~~v~---~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~ 417 (793)
+ ++. +++.+.+ ...++|++++||++|.+ . ..+..+++.|.+.+|.+....+.++.+
T Consensus 190 ~--ev~~~k~~i~~~~-------~~~~i~~~~~Sa~~~~~-~------e~~~~l~~~i~~~ip~~vv~s~~~~~~----- 248 (361)
T 2qag_A 190 K--ERERLKKRILDEI-------EEHNIKIYHLPDAESDE-D------EDFKEQTRLLKASIPFSVVGSNQLIEA----- 248 (361)
T ss_dssp H--HHHHHHHHHHHHT-------TCC-CCSCCCC----------------CHHHHHHHHHTCSCEECCCSEEC-------
T ss_pred H--HHHHHHHHHHHHH-------HHCCCCEEeCCCcCCCc-c------hhHHHHHHHHHhcCCCCEeCCCCcccc-----
Confidence 1 211 2222222 23357899999999874 2 257788899988888776554443321
Q ss_pred eeeCCCceEEEEEEee-ccccc
Q psy1760 418 EYSSYLGKIGIGRILS-GRIKS 438 (793)
Q Consensus 418 ~~~~~~G~v~~grV~s-G~lk~ 438 (793)
.|+.+.||.|. |.+.+
T Consensus 249 -----~g~~~~gr~ypwg~~~v 265 (361)
T 2qag_A 249 -----KGKKVRGRLYPWGVVEV 265 (361)
T ss_dssp ---------CEEECCSSCCEES
T ss_pred -----CCeEEEEEecCCceEec
Confidence 36667777774 55543
No 172
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.48 E-value=6.8e-14 Score=151.13 Aligned_cols=158 Identities=13% Similarity=0.095 Sum_probs=105.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCe--EEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT--RINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~--~i~iiDTPGh~df~~ 288 (793)
.+|+++|.+|+|||||+++|+....... ..+++.......+..++. .+.||||||+.+|..
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 218 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAFPGE-----------------YIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR 218 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCCS-----------------CCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTT
T ss_pred eEEEEECCCCCChHHHHHHHHhCCCCcc-----------------cCCcccceeEEEEEECCEEEEEEEEeCCCchhhhH
Confidence 4899999999999999999986522110 111222222333445554 456999999999988
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhH--HHHHHHHHc--CCccEEEEecccCCCCChh-----------hhHhHHHHHH
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALKL--GFKPIVVVNKIDRSNARPE-----------WVVDATFDLF 353 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~~--~ip~IvvINKiD~~~a~~~-----------~v~~~i~~~~ 353 (793)
.....++.+|++++|+|+++....+.. .++..+... ++|+++|+||+|+...... ...++..++.
T Consensus 219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 298 (332)
T 2wkq_A 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 298 (332)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHH
Confidence 888889999999999999875333222 233344443 7899999999998653110 0011111121
Q ss_pred hhhcccccccCc-cEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 354 DKLCATEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 354 ~~l~~~~~~l~~-Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
.. ..+ |++++||++|. |++++++.|.+.+..|
T Consensus 299 ~~-------~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 299 KE-------IGAVKYLECSALTQR----------GLKTVFDEAIRAVLCP 331 (332)
T ss_dssp HH-------TTCSEEEECCTTTCT----------THHHHHHHHHHHHHC-
T ss_pred HH-------cCCcEEEEecCCCCc----------CHHHHHHHHHHHHhcC
Confidence 11 233 79999999998 9999999998776543
No 173
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.47 E-value=8.9e-14 Score=148.45 Aligned_cols=173 Identities=14% Similarity=0.154 Sum_probs=104.4
Q ss_pred cceeeeecccCCcceehhhhhhccCcccccccc---cc--c------------------cccchh----h--------cc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNI---NA--R------------------IMDSNE----I--------EK 255 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v---~~--~------------------~~D~~~----~--------e~ 255 (793)
..|+++|.+|+|||||+|+|++........+.+ .. + +.+... . ..
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~ 106 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 106 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhccc
Confidence 489999999999999999998764321100000 00 0 011110 0 00
Q ss_pred ccceEEeeeeeEEeec-CeEEEEecCCCccc-------------chHHHHHHhhccCcEE-EEEeCCCCCCchhH-HHHH
Q psy1760 256 ERGITIFSKNCSIEYN-GTRINIIDTPGHAD-------------FGGEVERILSMVDNVL-LLIDAVEGPMPQTR-FVTR 319 (793)
Q Consensus 256 erGiTi~~~~~~~~~~-~~~i~iiDTPGh~d-------------f~~ev~~~l~~aD~al-lVVDa~~g~~~qt~-~~l~ 319 (793)
..|++.......+... ...++||||||+.+ +...+..+++.+|.+| +|+|+..+...+.. .+++
T Consensus 107 ~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~ 186 (299)
T 2aka_B 107 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAK 186 (299)
T ss_dssp TTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHH
T ss_pred CCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHH
Confidence 1233222222222222 47899999999742 4445566788888776 69999988776664 4666
Q ss_pred HHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhh
Q psy1760 320 KALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 398 (793)
Q Consensus 320 ~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~ 398 (793)
.+...+.|+++|+||+|+...+. ...+. +............|++++||++|. |+++|++.|.+.
T Consensus 187 ~~~~~~~~~i~V~NK~Dl~~~~~-~~~~~----~~~~~~~~~~~~~~v~~~SA~~~~----------gi~~l~~~l~~~ 250 (299)
T 2aka_B 187 EVDPQGQRTIGVITKLDLMDEGT-DARDV----LENKLLPLRRGYIGVVNRSQKDID----------GKKDITAALAAE 250 (299)
T ss_dssp HHCTTCSSEEEEEECGGGSCTTC-CCHHH----HTTCSSCCTTCEEECCCCCCBCTT----------SCBCHHHHHHHH
T ss_pred HhCCCCCeEEEEEEccccCCCCc-hHHHH----HhCCcCcCCCCcEEEECCChhhcc----------ccccHHHHHHHH
Confidence 77667899999999999975432 11111 111000000012478999999998 888888887664
No 174
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.45 E-value=1.4e-13 Score=144.91 Aligned_cols=114 Identities=19% Similarity=0.205 Sum_probs=83.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|++.... ......++|+......+.+++..++||||||+.+|....
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~ 101 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQVV---------------RVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSCCS---------------CCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEEC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCc---------------ccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccch
Confidence 58999999999999999999875321 122335667777777888999999999999998876544
Q ss_pred HHHhh---------ccCcEEEEEeCCCC-CCchhHHHHHHHHHc-C----CccEEEEecccCCC
Q psy1760 291 ERILS---------MVDNVLLLIDAVEG-PMPQTRFVTRKALKL-G----FKPIVVVNKIDRSN 339 (793)
Q Consensus 291 ~~~l~---------~aD~allVVDa~~g-~~~qt~~~l~~~~~~-~----ip~IvvINKiD~~~ 339 (793)
+..++ .+|++|+|+|.... .......+++.+... + .|+++|+||+|+..
T Consensus 102 ~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 102 HQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 43332 78999999887643 333444566555543 2 37899999999853
No 175
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.45 E-value=7.9e-14 Score=150.22 Aligned_cols=119 Identities=10% Similarity=0.092 Sum_probs=77.4
Q ss_pred cCeEEEEecCCCccc-------------chHHHHHHhhccCcEEEEEeC-CCCCCchh-HHHHHHHHHcCCccEEEEecc
Q psy1760 271 NGTRINIIDTPGHAD-------------FGGEVERILSMVDNVLLLIDA-VEGPMPQT-RFVTRKALKLGFKPIVVVNKI 335 (793)
Q Consensus 271 ~~~~i~iiDTPGh~d-------------f~~ev~~~l~~aD~allVVDa-~~g~~~qt-~~~l~~~~~~~ip~IvvINKi 335 (793)
++..++||||||+.+ +...+..++..+|++++|+|+ ..+...+. ..+++.+...+.|+++|+||+
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 208 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECT
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCc
Confidence 457899999999864 455667788999999999997 55555444 367777777899999999999
Q ss_pred cCCCCChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 336 DRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 336 D~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
|+...+. ...+.+... + .....+++++|+..+.+... ..|+.++++.+.+++|.
T Consensus 209 Dl~~~~~-~~~~~~~~~---~----~~~~~~~~~v~~~sa~~~~~----~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 209 DLMDKGT-DAMEVLTGR---V----IPLTLGFIGVINRSQEDIIA----KKSIRESLKSEILYFKN 262 (315)
T ss_dssp TSSCSSC-CCHHHHTTS---S----SCCTTCEEECCCCCHHHHSS----SCCHHHHHHHHHHHHHT
T ss_pred ccCCcch-HHHHHHhCC---C----ccCCCCeEEEecCChhhhcc----CCCHHHHHHHHHHHHhC
Confidence 9975432 122222110 0 11113344555544332110 12889999999888865
No 176
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.43 E-value=3.5e-13 Score=160.58 Aligned_cols=118 Identities=16% Similarity=0.240 Sum_probs=79.5
Q ss_pred eEEEEecCCCccc---chHHHHHHhhccCcEEEEEeCCCCCCchhHHHHH-HHHHcCCccEEEEecccCCCCC---hh--
Q psy1760 273 TRINIIDTPGHAD---FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTR-KALKLGFKPIVVVNKIDRSNAR---PE-- 343 (793)
Q Consensus 273 ~~i~iiDTPGh~d---f~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~-~~~~~~ip~IvvINKiD~~~a~---~~-- 343 (793)
..++||||||+.+ ....+..++..+|++|+|+|++.+........|. .+...+.|+++|+||+|+.... .+
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~ 253 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDV 253 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCH
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhH
Confidence 4699999999765 3445567789999999999999887777666664 4556788999999999986432 11
Q ss_pred ----hhHhHHHHH----Hhhhcc--cccccCccEEEeecC--------------CCCcccccccccCCchhhHHHHHhhc
Q psy1760 344 ----WVVDATFDL----FDKLCA--TEEQLDFPVIYTSAL--------------HGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 344 ----~v~~~i~~~----~~~l~~--~~~~l~~Pvi~~SA~--------------~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
+..+.+.+. +..... .......+++++||+ +|. |++.|++.|.+.+
T Consensus 254 e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~----------Gi~~L~~~L~~~l 323 (695)
T 2j69_A 254 EELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGT----------GFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTS----------SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhcc----------CHHHHHHHHHHHH
Confidence 112223222 211111 000123479999999 655 8888988887766
Q ss_pred C
Q psy1760 400 P 400 (793)
Q Consensus 400 p 400 (793)
.
T Consensus 324 ~ 324 (695)
T 2j69_A 324 T 324 (695)
T ss_dssp H
T ss_pred H
Confidence 4
No 177
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.42 E-value=1.5e-13 Score=150.32 Aligned_cols=114 Identities=21% Similarity=0.164 Sum_probs=76.0
Q ss_pred ecCeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCC-ChhhhHhH
Q psy1760 270 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-RPEWVVDA 348 (793)
Q Consensus 270 ~~~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a-~~~~v~~~ 348 (793)
++++.++||||||+.++... ....+|++|+|+|+..+...+.... ...+.|.++|+||+|+.+. +.....++
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~ 218 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGDNHTNVAIARHM 218 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCCCChHHHHHHHHH
Confidence 67899999999999887654 4689999999999986643332211 1135688999999999753 23334445
Q ss_pred HHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 349 TFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 349 i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
+++.+..+......+..|++++||++|. |++.|++.|.+.++
T Consensus 219 l~~~l~~~~~~~~~~~~~vi~iSA~~g~----------gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 219 YESALHILRRKYDEWQPRVLTCSALEKR----------GIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHSCCSBTTBCCEEEECBGGGTB----------SHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCCcEEEeeCCCCC----------CHHHHHHHHHHHHH
Confidence 5554433322111123578999999998 99999999987664
No 178
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.42 E-value=2.2e-12 Score=136.31 Aligned_cols=177 Identities=17% Similarity=0.170 Sum_probs=104.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccch---
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG--- 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~--- 287 (793)
.+|+++|++|+|||||+|+|++.... ......++|.......+.+++..++||||||+.++.
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~ 104 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGERVV---------------SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN 104 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCS---------------CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEEC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcc---------------cccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccch
Confidence 48999999999999999999865321 111223445555556677889999999999998765
Q ss_pred HHHHHHh------hccCcEEEEEeCCC-CCCchhHHHHHHHHHc-C----CccEEEEecccCCCC---ChhhhHhHHHHH
Q psy1760 288 GEVERIL------SMVDNVLLLIDAVE-GPMPQTRFVTRKALKL-G----FKPIVVVNKIDRSNA---RPEWVVDATFDL 352 (793)
Q Consensus 288 ~ev~~~l------~~aD~allVVDa~~-g~~~qt~~~l~~~~~~-~----ip~IvvINKiD~~~a---~~~~v~~~i~~~ 352 (793)
....+.+ +.+|++|+|+|+.. ........+++.+... + .|+++|+||+|+... .+++..++..+.
T Consensus 105 ~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~~~~~ 184 (270)
T 1h65_A 105 DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEA 184 (270)
T ss_dssp HHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHHHHHH
Confidence 2222222 36899999988754 3444445566555432 3 588999999998643 344444333333
Q ss_pred Hhhh---ccc-cccc---CccEEEeecCCCCcccccc-----cccCCchhhHHHHHhhcCcC
Q psy1760 353 FDKL---CAT-EEQL---DFPVIYTSALHGYANENSK-----ARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 353 ~~~l---~~~-~~~l---~~Pvi~~SA~~g~~~~~~~-----~~~~gi~~Ll~~I~~~lp~p 402 (793)
+... +.. ..+. .+|+..+++.......... .......+|++.|.+.+...
T Consensus 185 l~~~~~~~~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~ 246 (270)
T 1h65_A 185 LLQVVRSGASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNK 246 (270)
T ss_dssp HHHHHHHHTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhhhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcC
Confidence 3221 111 1111 2577666554221111000 00112457888887766554
No 179
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.41 E-value=2.8e-13 Score=149.01 Aligned_cols=116 Identities=25% Similarity=0.252 Sum_probs=80.0
Q ss_pred eecCeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCC-ChhhhHh
Q psy1760 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-RPEWVVD 347 (793)
Q Consensus 269 ~~~~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a-~~~~v~~ 347 (793)
.+.++.+.||||||.... ....+..+|.+|+|+|+..+...+... ......|.++|+||+|+... ......+
T Consensus 168 ~~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 168 EAAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK----KGVLELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp HHTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred hhCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH----HhHhhcCCEEEEECCCCcChhHHHHHHH
Confidence 346789999999996542 334568999999999998765443322 11134589999999998643 2233444
Q ss_pred HHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 348 ATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 348 ~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
++.+.+..+......+..|++++||++|. |+++|+++|.++++.
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~----------Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGR----------GLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTB----------SHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCC----------CHHHHHHHHHHHHHH
Confidence 55554443332222335689999999998 999999999887754
No 180
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.41 E-value=5.4e-13 Score=134.42 Aligned_cols=159 Identities=15% Similarity=0.159 Sum_probs=101.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccc----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF---- 286 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df---- 286 (793)
..++++|++|+|||||+++|++.... .......|.|.... .+.+++ .+.++||||+.++
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~~~--------------~~~~~~~G~~~~~~--~~~~~~-~~~l~Dt~G~~~~~~~~ 89 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQKSL--------------ARTSKTPGRTQLIN--LFEVAD-GKRLVDLPGYGYAEVPE 89 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC---------------------------CCEE--EEEEET-TEEEEECCCCC------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcc--------------ccccCCCccceeeE--EEEecC-CEEEEECcCCcccccCH
Confidence 47899999999999999999754210 01122345444322 233444 6889999998542
Q ss_pred ------hHHHHHHh---hccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCCh-hhhHhHHHHHHhhh
Q psy1760 287 ------GGEVERIL---SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARP-EWVVDATFDLFDKL 356 (793)
Q Consensus 287 ------~~ev~~~l---~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~-~~v~~~i~~~~~~l 356 (793)
...+...+ ..+|++++++|+..+.......+...+...++|.+++.||+|+..... ...++.+..++.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~ 169 (210)
T 1pui_A 90 EMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAF 169 (210)
T ss_dssp CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhc
Confidence 22222333 568999999999987665555666667778999999999999865321 11234444444322
Q ss_pred cccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 357 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 357 ~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
. ..++++++||+++. +++.+++.|.+.++.
T Consensus 170 ~-----~~~~~~~~Sal~~~----------~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 170 N-----GDVQVETFSSLKKQ----------GVDKLRQKLDTWFSE 199 (210)
T ss_dssp C-----SCEEEEECBTTTTB----------SHHHHHHHHHHHHC-
T ss_pred C-----CCCceEEEeecCCC----------CHHHHHHHHHHHHhh
Confidence 1 23568899999998 899999999877643
No 181
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.41 E-value=2.1e-13 Score=158.11 Aligned_cols=158 Identities=18% Similarity=0.206 Sum_probs=104.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeee------ee--EEeecCeEEEEecCCC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSK------NC--SIEYNGTRINIIDTPG 282 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~------~~--~~~~~~~~i~iiDTPG 282 (793)
.+|+++|.+|+|||||+++|++...... .....|.++... .. .....+..+++|||||
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~~~~~--------------~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G 107 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGETFDPK--------------ESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGG 107 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC-------------------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--------------CCCccceEEEEeccccccceeecCCCceEEEEEEECCc
Confidence 5899999999999999999986521100 000112222111 00 0112367899999999
Q ss_pred cccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcC--CccEEEEecccCCCCChhhhHhHHHHHHhhhcccc
Q psy1760 283 HADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG--FKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 360 (793)
Q Consensus 283 h~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~--ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~ 360 (793)
+..|.......++.+|++|+|+|++.. .....++..+...+ .|+|+|+||+|+...+. ...+++.+.+..
T Consensus 108 ~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~-v~~~~~~~~~~~----- 179 (535)
T 3dpu_A 108 QEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYN-IEQKKINERFPA----- 179 (535)
T ss_dssp CCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCC-CCHHHHHHHCGG-----
T ss_pred HHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccc-cCHHHHHHHHHh-----
Confidence 999988888889999999999999864 44555666666655 89999999999975431 122334444332
Q ss_pred cccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 361 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 361 ~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
...|++++||++|. |+++|++.|.+.+...
T Consensus 180 --~~~~~~~vSA~~g~----------gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 180 --IENRFHRISCKNGD----------GVESIAKSLKSAVLHP 209 (535)
T ss_dssp --GTTCEEECCC---------------CTTHHHHHHHHHTCT
T ss_pred --cCCceEEEecCccc----------CHHHHHHHHHHHHhcc
Confidence 24579999999998 9999999998887654
No 182
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=3.7e-13 Score=137.21 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=96.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCe--EEEEecCCCcccc-h
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT--RINIIDTPGHADF-G 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~--~i~iiDTPGh~df-~ 287 (793)
.+|+++|.+|+|||||+++|++....+.... ...|.+. ....+.+++. .+.+|||+|.... .
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-------------~~~g~d~--~~~~i~~~~~~~~l~~~Dt~g~~~~~~ 102 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-------------EVLGEDT--YERTLMVDGESATIILLDMWENKGENE 102 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC----------------CCTTE--EEEEEEETTEEEEEEEECCTTTTHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-------------Cccceee--EEEEEEECCeeeEEEEeecCCCcchhh
Confidence 5799999999999999999985422221100 0011111 1223444554 5678999998763 2
Q ss_pred HHHHHHhhccCcEEEEEeCCCCCCch-hHHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccc
Q psy1760 288 GEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 288 ~ev~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~ 362 (793)
.......+.+|++|+|+|.++....+ ...++..+.. .++|+|+|.||+|+...+.. ..++...+.. .
T Consensus 103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v-~~~e~~~~a~-------~ 174 (211)
T 2g3y_A 103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREV-SVSEGRACAV-------V 174 (211)
T ss_dssp HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCS-CHHHHHHHHH-------H
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceE-eHHHHHHHHH-------H
Confidence 22222356789999999988632111 1223333332 37899999999999653211 1112111111 1
Q ss_pred cCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 363 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 363 l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
..++++.+||++|. |++++++.|.+.+.
T Consensus 175 ~~~~~~e~SAk~g~----------~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 175 FDCKFIETSAAVQH----------NVKELFEGIVRQVR 202 (211)
T ss_dssp HTCEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 24578999999998 99999999987764
No 183
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.39 E-value=2.3e-13 Score=138.09 Aligned_cols=143 Identities=20% Similarity=0.275 Sum_probs=87.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+........ ......++ ..+.+..+++|||||+.+|...+
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~~~~~~-------------~~~~~~~~-------~~~~~~~~~l~Dt~G~~~~~~~~ 72 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDSVRPTV-------------VSQEPLSA-------ADYDGSGVTLVDFPGHVKLRYKL 72 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSCCCBC-------------CCSSCEEE-------TTGGGSSCEEEECCCCGGGTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCee-------------eecCceEE-------EEeeCceEEEEECCCcHHHHHHH
Confidence 58999999999999999999865321100 00011111 11256789999999999998888
Q ss_pred HHHhhc----cCcEEEEEeCC-CC-CCchhHHHHHHHHH-------cCCccEEEEecccCCCCCh-hhhHhHHHHHHhhh
Q psy1760 291 ERILSM----VDNVLLLIDAV-EG-PMPQTRFVTRKALK-------LGFKPIVVVNKIDRSNARP-EWVVDATFDLFDKL 356 (793)
Q Consensus 291 ~~~l~~----aD~allVVDa~-~g-~~~qt~~~l~~~~~-------~~ip~IvvINKiD~~~a~~-~~v~~~i~~~~~~l 356 (793)
...++. +|++|+|+|++ +. .......++..... .++|+++|+||+|+...+. .++.+.+.+.+..+
T Consensus 73 ~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 152 (218)
T 1nrj_B 73 SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKV 152 (218)
T ss_dssp HHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHH
Confidence 888877 89999999998 32 22222333333322 4789999999999987643 33333333333333
Q ss_pred cccccccCccEEEeecCCCC
Q psy1760 357 CATEEQLDFPVIYTSALHGY 376 (793)
Q Consensus 357 ~~~~~~l~~Pvi~~SA~~g~ 376 (793)
... ...+++.+||++|.
T Consensus 153 ~~~---~~~~~~~~Sa~~~~ 169 (218)
T 1nrj_B 153 IER---RKKSLNEVERKINE 169 (218)
T ss_dssp HHH---HHHHHHC-------
T ss_pred HHH---Hhcccccccccccc
Confidence 221 13467889999886
No 184
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.39 E-value=3.2e-13 Score=133.68 Aligned_cols=165 Identities=16% Similarity=0.171 Sum_probs=97.9
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEE---eecCeEEEEecCCCcccch
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSI---EYNGTRINIIDTPGHADFG 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~---~~~~~~i~iiDTPGh~df~ 287 (793)
.+|+++|.+|+|||||+++|++....+.. ......|+........+ ......+.+|||||+..|.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~------------~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 70 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLG------------MQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFY 70 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------------------CSEEEEEEEC---------CEEEEEEECSHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCC------------CcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHH
Confidence 37899999999999999999864211100 00001122221111111 1135689999999998887
Q ss_pred HHHHHHhhccCcEEEEEeCCCCCC--chhHHHHHHHHH--cCCccEEEEecccCCCCChhhhHhHHHHHHhhhccccccc
Q psy1760 288 GEVERILSMVDNVLLLIDAVEGPM--PQTRFVTRKALK--LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363 (793)
Q Consensus 288 ~ev~~~l~~aD~allVVDa~~g~~--~qt~~~l~~~~~--~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l 363 (793)
......++.+|++++|+|.+++.. .....++..+.. .+.|+++|.||+|+...+ .+.+...+....+. ...
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~---~~~ 145 (184)
T 2zej_A 71 STHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEK--QRKACMSKITKELL---NKR 145 (184)
T ss_dssp TTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHH--HHHHHHHHHHHHTT---TCT
T ss_pred HhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccch--hhHHHHHHHHHHHH---Hhc
Confidence 766777889999999999987521 122233333333 368889999999997532 11111111111111 122
Q ss_pred Ccc----EEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 364 DFP----VIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 364 ~~P----vi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
.+| ++++||++|. .+++.|++.|.+.++.
T Consensus 146 ~~~~~~~~~~~Sa~~~~---------~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 146 GFPAIRDYHFVNATEES---------DALAKLRKTIINESLN 178 (184)
T ss_dssp TSCEEEEEEECCTTSCC---------HHHHHHHHHHHHHHHC
T ss_pred CCcchhheEEEecccCc---------hhHHHHHHHHHHHHhc
Confidence 344 8999999983 1688899998877654
No 185
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.37 E-value=4.2e-13 Score=138.89 Aligned_cols=163 Identities=18% Similarity=0.148 Sum_probs=96.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccch---
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG--- 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~--- 287 (793)
.+|+++|++|+|||||+++|++...... .....++|.......+.+++..++||||||+.+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~ 95 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVFHS--------------GTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPN 95 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCSCC---------------------CCSCEEEEEEETTEEEEEEECCSCC-----C
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcCcc--------------CCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCH
Confidence 5899999999999999999986532110 01122566666677788999999999999976532
Q ss_pred ----HHHHH----HhhccCcEEEEEeCCCCCCchhHHHHHHHH-----HcCCccEEEEecccCCCCC-hhhhH----hHH
Q psy1760 288 ----GEVER----ILSMVDNVLLLIDAVEGPMPQTRFVTRKAL-----KLGFKPIVVVNKIDRSNAR-PEWVV----DAT 349 (793)
Q Consensus 288 ----~ev~~----~l~~aD~allVVDa~~g~~~qt~~~l~~~~-----~~~ip~IvvINKiD~~~a~-~~~v~----~~i 349 (793)
.++.+ ..+.+|++|+|+|+.. ........+..+. ....|+++|+||+|+...+ .++.+ +.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l 174 (239)
T 3lxx_A 96 AETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDI 174 (239)
T ss_dssp HHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHH
Confidence 23333 3445699999999974 3344444444433 2345899999999986542 22222 123
Q ss_pred HHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 350 FDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 350 ~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
+++....+ ..+++.++..+.+. ...++.+|++.+...+.
T Consensus 175 ~~l~~~~~-------~~~~~~~~~~~~~~-----~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 175 QDLMDIFG-------DRYCALNNKATGAE-----QEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp HHHHHHHS-------SSEEECCTTCCHHH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC-------CEEEEEECCCCccc-----cHHHHHHHHHHHHHHHH
Confidence 33333333 23555665533110 11277889988876664
No 186
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.35 E-value=1.1e-12 Score=131.19 Aligned_cols=157 Identities=18% Similarity=0.154 Sum_probs=94.3
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCe--EEEEecCCCccc-ch
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT--RINIIDTPGHAD-FG 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~--~i~iiDTPGh~d-f~ 287 (793)
..|+++|.+|+|||||+++|++....+... .. ..|.+. ....+.+++. .+.+|||+|... +.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~---------~~----~~~~~~--~~~~~~~~~~~~~l~~~Dt~~~~~~~~ 71 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSD---------XE----VLGEDT--YERTLMVDGESATIILLDMWENKGENE 71 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC-------------G----GGCTTE--EEEEEEETTEEEEEEEECCCCC----C
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCcc---------cc----ccceeE--EEEEEEECCeEEEEEEEEeccCcchhh
Confidence 479999999999999999998643222110 00 011111 1223445554 567899999765 22
Q ss_pred HHHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccc
Q psy1760 288 GEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 362 (793)
Q Consensus 288 ~ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~ 362 (793)
......++.+|++++|+|.++....+. ..++..+.. .+.|+|+|.||+|+...+.. ..++...+.. .
T Consensus 72 ~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v-~~~~~~~~a~-------~ 143 (192)
T 2cjw_A 72 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREV-SVSEGRAXAV-------V 143 (192)
T ss_dssp TTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCS-CHHHHHHHHH-------H
T ss_pred hHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccc-cHHHHHHHHH-------H
Confidence 222335677999999999986322111 223333332 37899999999998643211 1112111111 1
Q ss_pred cCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 363 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 363 l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
.+++++.+||++|. |++++++.|.+.+.
T Consensus 144 ~~~~~~e~SA~~g~----------~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 144 FDXKFIETSAAVQH----------NVKELFEGIVRQVR 171 (192)
T ss_dssp TTCEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred hCCceEEeccccCC----------CHHHHHHHHHHHHH
Confidence 23578999999998 99999999987663
No 187
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.33 E-value=2.7e-12 Score=128.57 Aligned_cols=156 Identities=21% Similarity=0.216 Sum_probs=103.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+++++|++|+|||||+++|++...... ..+.++.......+.+++ ..+.+|||||+..|..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~----------------~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~ 69 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLE----------------SKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR 69 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCC----------------CCCccceeEEEEEEEECCEEEEEEEEECCCchhhhh
Confidence 4789999999999999999986522110 001111222334455666 4678899999988877
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.....+..+|++++|+|..+....+. ..++..+.. .+.|+++++||+|+...+. ...++.+.+... ..
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~-~~~~~a~~l~~~-------~~ 141 (199)
T 2f9l_A 70 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA-VPTDEARAFAEK-------NN 141 (199)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC-SCHHHHHHHHHH-------TT
T ss_pred hhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccC-cCHHHHHHHHHH-------cC
Confidence 77777889999999999986432222 223333332 3678899999999965321 112223333221 23
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
++++.+||+++. |++++++.|.+.+.
T Consensus 142 ~~~~d~Sal~~~----------~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 142 LSFIETSALDST----------NVEEAFKNILTEIY 167 (199)
T ss_dssp CEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 578889999998 88889988877664
No 188
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.32 E-value=3.3e-13 Score=150.39 Aligned_cols=82 Identities=20% Similarity=0.179 Sum_probs=46.0
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEe---------------------e
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE---------------------Y 270 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~---------------------~ 270 (793)
+|+|+|++|+|||||+|+|++.. . .....+++|+........ +
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~---------------~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~ 65 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-V---------------EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYR 65 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC------------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-C---------------cccCCCCcccCCceEEEeeccCCchHHhhhhccccccccc
Confidence 68999999999999999998653 1 111223334333322211 1
Q ss_pred c---CeEEEEecCCCcccchHH-------HHHHhhccCcEEEEEeCCCC
Q psy1760 271 N---GTRINIIDTPGHADFGGE-------VERILSMVDNVLLLIDAVEG 309 (793)
Q Consensus 271 ~---~~~i~iiDTPGh~df~~e-------v~~~l~~aD~allVVDa~~g 309 (793)
+ ...+.||||||+.++... ....++.+|++++|+|++++
T Consensus 66 ~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 66 NGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp TTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 2 367999999998653211 11346889999999999875
No 189
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.30 E-value=4.1e-12 Score=136.97 Aligned_cols=160 Identities=13% Similarity=0.146 Sum_probs=99.0
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchH---
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG--- 288 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~--- 288 (793)
+|.++|..|+|||||+.++...... .. ...-+.|+......+. ...+++||||||+.+|..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~--~~-------------~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l 64 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQP--LD-------------TLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSY 64 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCS--GG-------------GTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCC--Cc-------------cceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhh
Confidence 4789999999999999877543110 00 0001223322222232 347899999999999964
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchhHHHHHH----HHH--cCCccEEEEecccCCCCCh-h----hhHhHHHHHHhhhc
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRK----ALK--LGFKPIVVVNKIDRSNARP-E----WVVDATFDLFDKLC 357 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~----~~~--~~ip~IvvINKiD~~~a~~-~----~v~~~i~~~~~~l~ 357 (793)
....+++.++++|+|+|+++. .......|.. +.. .++|+++|.||+|+...+. . .+..+..+.+.+.+
T Consensus 65 ~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~ 143 (331)
T 3r7w_B 65 DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELG 143 (331)
T ss_dssp HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSS
T ss_pred hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhc
Confidence 457789999999999999986 4444444432 222 3688999999999975421 1 12222222222111
Q ss_pred ccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 358 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 358 ~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
. +..+++++.+||++. ++.+.+..|++.+.+
T Consensus 144 ~--~~~~i~f~eTSAkd~-----------nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 144 L--DGVQVSFYLTSIFDH-----------SIYEAFSRIVQKLIP 174 (331)
T ss_dssp C--SCCCEEEECCCSSSS-----------HHHHHHHHHHTTSST
T ss_pred c--cccCceEEEeccCCC-----------cHHHHHHHHHHHHHh
Confidence 0 124678999999873 566666666665543
No 190
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.27 E-value=4.4e-12 Score=139.32 Aligned_cols=171 Identities=15% Similarity=0.191 Sum_probs=98.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccc---c--------------------ccccchhhc--------c----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN---A--------------------RIMDSNEIE--------K---- 255 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~---~--------------------~~~D~~~~e--------~---- 255 (793)
..|+++|.+|+|||||+|+|++........+.+. . .+.+...+. +
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~ 111 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 111 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhccc
Confidence 4799999999999999999987643211100000 0 001111000 0
Q ss_pred ccceEEeeeeeEEeec-CeEEEEecCCCccc-------------chHHHHHHhhcc-CcEEEEEeCCCCCCchhH-HHHH
Q psy1760 256 ERGITIFSKNCSIEYN-GTRINIIDTPGHAD-------------FGGEVERILSMV-DNVLLLIDAVEGPMPQTR-FVTR 319 (793)
Q Consensus 256 erGiTi~~~~~~~~~~-~~~i~iiDTPGh~d-------------f~~ev~~~l~~a-D~allVVDa~~g~~~qt~-~~l~ 319 (793)
..|+........+... +..++||||||+.+ +...+..++..+ +++++|+|+..+...+.. .+++
T Consensus 112 ~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~ 191 (353)
T 2x2e_A 112 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAK 191 (353)
T ss_dssp TTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHH
T ss_pred CCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHH
Confidence 1333322222333333 57899999999743 233444556554 456667788776665554 3666
Q ss_pred HHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC-ccEEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 320 KALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 320 ~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~-~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
.+...+.|.|+|+||+|+.+.... .. +.+..... ..... ++++++||++|. |+++|++++.+
T Consensus 192 ~~~~~~~~~i~V~NK~Dl~~~~~~-~~----~~~~~~~~-~l~~~~~~v~~~SA~~~~----------~i~~l~~~l~~ 254 (353)
T 2x2e_A 192 EVDPQGQRTIGVITKLDLMDEGTD-AR----DVLENKLL-PLRRGYIGVVNRSQKDID----------GKKDITAALAA 254 (353)
T ss_dssp HHCTTCTTEEEEEECGGGSCTTCC-CH----HHHTTCSS-CCTTCEEECCCCCHHHHH----------TTCCHHHHHHH
T ss_pred HhCcCCCceEEEeccccccCcchh-HH----HHHhCCcc-cccCCceEEEeCCccccc----------ccccHHHHHHH
Confidence 666678999999999999754321 11 11111000 00112 368899999998 66667776654
No 191
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.26 E-value=2.2e-12 Score=127.98 Aligned_cols=125 Identities=24% Similarity=0.356 Sum_probs=79.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 290 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev 290 (793)
.+|+++|++|+|||||+++|+....... ......+++ ..+.+..+.+|||||+.+|...+
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~~~~-------------~~~~~~~~~-------~~~~~~~~~l~Dt~G~~~~~~~~ 108 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSVRPT-------------VVSQEPLSA-------ADYDGSGVTLVDFPGHVKLRYKL 108 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSCC--------------------------------CCCCTTCSEEEETTCCBSSCCH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc-------------cccCCCcee-------eeecCCeEEEEECCCCchHHHHH
Confidence 5899999999999999999986531110 001111111 12256789999999999987777
Q ss_pred HHHhhc----cCcEEEEEeCCCCCC--chhHHHHHHHHH-------cCCccEEEEecccCCCCC-hhhhHhHHHHHHhh
Q psy1760 291 ERILSM----VDNVLLLIDAVEGPM--PQTRFVTRKALK-------LGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDK 355 (793)
Q Consensus 291 ~~~l~~----aD~allVVDa~~g~~--~qt~~~l~~~~~-------~~ip~IvvINKiD~~~a~-~~~v~~~i~~~~~~ 355 (793)
...+.. +|++|+|+|++.... .....++..+.. .+.|+++|+||+|+...+ ..++.+.+.+.+..
T Consensus 109 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l~~ 187 (193)
T 2ged_A 109 SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQK 187 (193)
T ss_dssp HHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHHHH
Confidence 776665 899999999982211 111122222221 378999999999997653 44555555544433
No 192
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.26 E-value=6.3e-12 Score=137.89 Aligned_cols=114 Identities=19% Similarity=0.193 Sum_probs=67.5
Q ss_pred ecCeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCC-hhhhHhH
Q psy1760 270 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDA 348 (793)
Q Consensus 270 ~~~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~-~~~v~~~ 348 (793)
+.++.+.|+||||..+.. ......+|.+++|+|+..+...+.. .. .-...|.++|+||+|+.... ......+
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i---~~-~il~~~~ivVlNK~Dl~~~~~~~~~~~~ 236 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGI---KR-GIIEMADLVAVTKSDGDLIVPARRIQAE 236 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGGHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHh---HH-HHHhcCCEEEEeeecCCCchhHHHHHHH
Confidence 467899999999975432 3346789999999999876432211 11 12456889999999986421 1112233
Q ss_pred HHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 349 TFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 349 i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
+...+..+.........|++++||++|. |++.|+++|.+.++
T Consensus 237 l~~~l~~~~~~a~~~~~~vi~iSA~~g~----------Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 237 YVSALKLLRKRSQVWKPKVIRISARSGE----------GISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHTTCC-----CCCEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HHHHHHhcCccccCCCceEEEEecCCCC----------CHHHHHHHHHHHHH
Confidence 3332222111101123578999999998 99999999877654
No 193
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.24 E-value=1.6e-11 Score=122.35 Aligned_cols=155 Identities=21% Similarity=0.222 Sum_probs=102.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCe--EEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT--RINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~--~i~iiDTPGh~df~~ 288 (793)
..++++|++|+|||||+++|++...... ....++.......+.+++. .+.+|||||+..|..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~----------------~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~ 93 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLE----------------SKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA 93 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCS----------------CCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCC----------------CCCccceEEEEEEEEECCEEEEEEEEECCCCcchhh
Confidence 5789999999999999999986532110 0112223333445566665 456799999998888
Q ss_pred HHHHHhhccCcEEEEEeCCCCCCchh-HHHHHHHHH---cCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC
Q psy1760 289 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 364 (793)
Q Consensus 289 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~ 364 (793)
.+...++.+|++++|+|..+....+. ..++..+.. .+.|+++++||+|+...+. ...++.+.+... ..
T Consensus 94 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~-~~~~~a~~l~~~-------~~ 165 (191)
T 1oix_A 94 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA-VPTDEARAFAEK-------NG 165 (191)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC-SCHHHHHHHHHH-------TT
T ss_pred hhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc-cCHHHHHHHHHH-------cC
Confidence 77788888999999999876422111 223333332 3678899999999865321 112223333221 23
Q ss_pred ccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 365 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 365 ~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
++++.+||+++. +++++++.|.+.+
T Consensus 166 ~~~ld~Sald~~----------~v~~l~~~l~~~i 190 (191)
T 1oix_A 166 LSFIETSALDST----------NVEAAFQTILTEI 190 (191)
T ss_dssp CEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred CEEEEEeCCCCC----------CHHHHHHHHHHHh
Confidence 568889999998 8999999887653
No 194
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.24 E-value=1.4e-11 Score=137.79 Aligned_cols=156 Identities=22% Similarity=0.294 Sum_probs=103.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC-eEEEEecCCCccc----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-TRINIIDTPGHAD---- 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~-~~i~iiDTPGh~d---- 285 (793)
..++|+|++|+|||||+++|+.....+ .....+|+......+.+++ ..++++||||+.+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i----------------~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~ 221 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKI----------------APYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 221 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEE----------------CCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGG
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccc----------------cCcccceecceeeEEEecCcceEEEEeccccccchhh
Confidence 357899999999999999997552211 1112234444445566665 7899999999854
Q ss_pred ---chHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHH-----cCCccEEEEecccCCCCChhhhHhHHHHHHhhhc
Q psy1760 286 ---FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC 357 (793)
Q Consensus 286 ---f~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~-----~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~ 357 (793)
+.....+.+..+|.+|+++|++.....+....++.... ...|.|+++||+|.... ...+++.+.+..
T Consensus 222 ~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~~-- 296 (416)
T 1udx_A 222 GKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADALAR-- 296 (416)
T ss_dssp SCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHHHT--
T ss_pred hhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHHHh--
Confidence 22334455678999999999972111122222222222 35789999999998753 334444444322
Q ss_pred ccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcC
Q psy1760 358 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 402 (793)
Q Consensus 358 ~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p 402 (793)
..++++++||+++. |+++|++.|.+.+...
T Consensus 297 -----~g~~vi~iSA~~g~----------gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 297 -----EGLAVLPVSALTGA----------GLPALKEALHALVRST 326 (416)
T ss_dssp -----TTSCEEECCTTTCT----------THHHHHHHHHHHHHTS
T ss_pred -----cCCeEEEEECCCcc----------CHHHHHHHHHHHHHhc
Confidence 14679999999998 9999999998877543
No 195
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.22 E-value=3.8e-12 Score=129.46 Aligned_cols=167 Identities=15% Similarity=0.175 Sum_probs=98.3
Q ss_pred cceeeeecccCCcceehhhhhhccCcccccccccc---ccccchhhccccceEEeeee----eEE----------eecCe
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA---RIMDSNEIEKERGITIFSKN----CSI----------EYNGT 273 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~---~~~D~~~~e~erGiTi~~~~----~~~----------~~~~~ 273 (793)
.+++++|++|+|||||+++|+.......+...+.. ...|....+ ..|+++.... ..+ .+.+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVR-RFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHH-TTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHH-hCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 58999999999999999999876322111111100 001111111 1233321111 011 34567
Q ss_pred EEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHH
Q psy1760 274 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLF 353 (793)
Q Consensus 274 ~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~ 353 (793)
.+.+|||||..+..... -..++.+++|+|+..+... .+..+...+.|.++|+||+|+.... ....+++.+.+
T Consensus 110 d~iiidt~G~~~~~~~~---~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~~~~-~~~~~~~~~~~ 181 (221)
T 2wsm_A 110 DLLLIENVGNLICPVDF---DLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALAEAV-GADVEKMKADA 181 (221)
T ss_dssp SEEEEEEEEBSSGGGGC---CCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGHHHH-TCCHHHHHHHH
T ss_pred CEEEEeCCCCCCCCchh---ccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCCcch-hhHHHHHHHHH
Confidence 89999999952211110 0246889999999886432 2333344578999999999986421 01223333333
Q ss_pred hhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 354 DKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 354 ~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
..++ ...|++++||++|. |+++|+++|.+.+..
T Consensus 182 ~~~~-----~~~~i~~~Sa~~g~----------gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 182 KLIN-----PRAKIIEMDLKTGK----------GFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHC-----TTSEEEECBTTTTB----------THHHHHHHHHHHHC-
T ss_pred HHhC-----CCCeEEEeecCCCC----------CHHHHHHHHHHHHHH
Confidence 3322 13579999999998 999999999877644
No 196
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.18 E-value=1.6e-11 Score=128.65 Aligned_cols=85 Identities=21% Similarity=0.206 Sum_probs=56.6
Q ss_pred ccCcEEEEEeCCCC--CCch-hHHHHHHHH----HcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEE
Q psy1760 296 MVDNVLLLIDAVEG--PMPQ-TRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVI 368 (793)
Q Consensus 296 ~aD~allVVDa~~g--~~~q-t~~~l~~~~----~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi 368 (793)
.||++|+|+|+++. .... ...++..+. ..++|+++|.||+|+... ..+++..++... ...++++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~---~~v~~~~~~~~~------~~~~~~~ 232 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE---RYIRDAHTFALS------KKNLQVV 232 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH---HHHHHHHHHHHT------SSSCCEE
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc---HHHHHHHHHHHh------cCCCeEE
Confidence 58999999999875 2222 223333332 347899999999998642 122343333221 1246899
Q ss_pred EeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 369 YTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 369 ~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.+||++|. |++++++.|.+.+
T Consensus 233 e~SAk~g~----------gv~elf~~l~~~l 253 (255)
T 3c5h_A 233 ETSARSNV----------NVDLAFSTLVQLI 253 (255)
T ss_dssp ECBTTTTB----------SHHHHHHHHHHHH
T ss_pred EEECCCCC----------CHHHHHHHHHHHh
Confidence 99999998 9999999987654
No 197
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.18 E-value=4.8e-11 Score=141.61 Aligned_cols=171 Identities=14% Similarity=0.182 Sum_probs=105.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccc-----------------------cccccchhh------------cc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN-----------------------ARIMDSNEI------------EK 255 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~-----------------------~~~~D~~~~------------e~ 255 (793)
..|+++|.+++|||||+|+|++........+.+. ..+.+...+ ..
T Consensus 52 p~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~ 131 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 131 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcCC
Confidence 4899999999999999999997542111111000 000011100 01
Q ss_pred ccceEEeeeeeEEeec-CeEEEEecCCCccc-------------chHHHHHHh-hccCcEEEEEeCCCCCCchhH-HHHH
Q psy1760 256 ERGITIFSKNCSIEYN-GTRINIIDTPGHAD-------------FGGEVERIL-SMVDNVLLLIDAVEGPMPQTR-FVTR 319 (793)
Q Consensus 256 erGiTi~~~~~~~~~~-~~~i~iiDTPGh~d-------------f~~ev~~~l-~~aD~allVVDa~~g~~~qt~-~~l~ 319 (793)
..|++-......+.+. ...++|+||||... +...+..++ ..+|++|+|+||..++..+.. .+++
T Consensus 132 ~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~ 211 (772)
T 3zvr_A 132 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAK 211 (772)
T ss_dssp TTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHH
T ss_pred CCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHH
Confidence 1333333333344443 45799999999754 122333444 468999999999998887776 6788
Q ss_pred HHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccC-ccEEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 320 KALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 320 ~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~-~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
.+...+.|.|+|+||+|+...... .. +.... ........ .|++++||++|. |++.|+++|.+
T Consensus 212 ~L~~~g~pvIlVlNKiDlv~~~~~--~~---~il~~-~~~~l~lg~~~VV~iSA~~G~----------GvdeL~eaI~~ 274 (772)
T 3zvr_A 212 EVDPQGQRTIGVITKLDLMDEGTD--AR---DVLEN-KLLPLRRGYIGVVNRSQKDID----------GKKDITAALAA 274 (772)
T ss_dssp HHCTTCSSEEEEEECTTSSCTTCC--SH---HHHTT-CSSCCSSCEEECCCCCCEESS----------SSEEHHHHHHH
T ss_pred HHHhcCCCEEEEEeCcccCCcchh--hH---HHHHH-HhhhhhccCCceEEecccccc----------cchhHHHHHHH
Confidence 888889999999999999754211 11 11110 00000112 478999999998 77777777765
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.17 E-value=3.4e-11 Score=139.70 Aligned_cols=129 Identities=22% Similarity=0.215 Sum_probs=84.5
Q ss_pred cceeeeecccCCcceehhhhhhccCc--cccccccccc---cccchhhccccceEEe------------------eeeeE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGT--FRKNQNINAR---IMDSNEIEKERGITIF------------------SKNCS 267 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~--~~~~~~v~~~---~~D~~~~e~erGiTi~------------------~~~~~ 267 (793)
..|+++|++|+|||||+|+|++.... .........+ +......+...|.++. .....
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~~ 145 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMC 145 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccceE
Confidence 57999999999999999999987432 1100000000 0000000000111100 00011
Q ss_pred EeecC---eEEEEecCCCccc-----------chHHHHHHhhccCcEEEEEeCCC-CCCchhHHHHHHHHHcCCccEEEE
Q psy1760 268 IEYNG---TRINIIDTPGHAD-----------FGGEVERILSMVDNVLLLIDAVE-GPMPQTRFVTRKALKLGFKPIVVV 332 (793)
Q Consensus 268 ~~~~~---~~i~iiDTPGh~d-----------f~~ev~~~l~~aD~allVVDa~~-g~~~qt~~~l~~~~~~~ip~IvvI 332 (793)
+.+.+ ..++||||||+.+ |...+...+..+|++|+|+|+.+ +...++..+++.+...+.|+++|+
T Consensus 146 ~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVl 225 (550)
T 2qpt_A 146 AQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVL 225 (550)
T ss_dssp EECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEE
T ss_pred EeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 22222 3689999999976 66777788999999999999987 577788888888888888999999
Q ss_pred ecccCCC
Q psy1760 333 NKIDRSN 339 (793)
Q Consensus 333 NKiD~~~ 339 (793)
||+|+..
T Consensus 226 NK~Dl~~ 232 (550)
T 2qpt_A 226 NKADMVE 232 (550)
T ss_dssp ECGGGSC
T ss_pred ECCCccC
Confidence 9999975
No 199
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.12 E-value=5.2e-11 Score=131.05 Aligned_cols=97 Identities=16% Similarity=0.224 Sum_probs=65.4
Q ss_pred CeEEEEecCCCcccc-------------hHHHHHHhhccCcEEEEEeCCCC-CC-chhHHHHHHHHHcCCccEEEEeccc
Q psy1760 272 GTRINIIDTPGHADF-------------GGEVERILSMVDNVLLLIDAVEG-PM-PQTRFVTRKALKLGFKPIVVVNKID 336 (793)
Q Consensus 272 ~~~i~iiDTPGh~df-------------~~ev~~~l~~aD~allVVDa~~g-~~-~qt~~~l~~~~~~~ip~IvvINKiD 336 (793)
...++||||||+.++ ...+..++..+|++|+|+|+... .. .....+++.+...+.|+|+|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 567999999998876 45566778999999999987542 11 2224445555556889999999999
Q ss_pred CCCCChhhhHhHHHHHHhhhcccccccCccEEEeecCCCC
Q psy1760 337 RSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 376 (793)
Q Consensus 337 ~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~ 376 (793)
+..... ... +.+.. ....+..|++.+|++++.
T Consensus 215 l~~~~~-~~~----~~~~~---~~~~~~~~~~~v~~~s~~ 246 (360)
T 3t34_A 215 LMDKGT-DAV----EILEG---RSFKLKYPWVGVVNRSQA 246 (360)
T ss_dssp GCCTTC-CSH----HHHTT---SSSCCSSCCEEECCCCHH
T ss_pred cCCCcc-cHH----HHHcC---ccccccCCeEEEEECChH
Confidence 975421 111 11111 122345788999999876
No 200
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.04 E-value=9.4e-11 Score=122.44 Aligned_cols=115 Identities=23% Similarity=0.172 Sum_probs=72.4
Q ss_pred CeEEEEecCCCcccchH------HHHHHhhccCcEEEEEeCCCCCCchhHH-H----HHHHHHcCCccEEEEecccCCCC
Q psy1760 272 GTRINIIDTPGHADFGG------EVERILSMVDNVLLLIDAVEGPMPQTRF-V----TRKALKLGFKPIVVVNKIDRSNA 340 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~------ev~~~l~~aD~allVVDa~~g~~~qt~~-~----l~~~~~~~ip~IvvINKiD~~~a 340 (793)
++.+.||||||..++.. .+...+.. +.+|+++|+.....+.... . +......++|.++|+||+|+...
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccccc
Confidence 35899999999876532 22334555 8889999998765554332 1 12233457899999999998653
Q ss_pred ChhhhHhHHHHHHh-------hhc----------------ccccccCccEEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 341 RPEWVVDATFDLFD-------KLC----------------ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 341 ~~~~v~~~i~~~~~-------~l~----------------~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
. ..+++.+.+. .+. ........+++++||++|. |+++|+++|.+
T Consensus 187 ~---~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~----------gi~~l~~~i~~ 253 (262)
T 1yrb_A 187 E---EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTRE----------GFEDLETLAYE 253 (262)
T ss_dssp H---HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCT----------THHHHHHHHHH
T ss_pred c---cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcc----------cHHHHHHHHHH
Confidence 2 1112222111 110 0011112478999999998 99999999987
Q ss_pred hcC
Q psy1760 398 YVP 400 (793)
Q Consensus 398 ~lp 400 (793)
.++
T Consensus 254 ~~~ 256 (262)
T 1yrb_A 254 HYC 256 (262)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 201
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.02 E-value=4.8e-10 Score=122.86 Aligned_cols=82 Identities=17% Similarity=0.161 Sum_probs=57.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC-----------------e
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-----------------T 273 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~-----------------~ 273 (793)
.+|+|+|.+|+|||||+|+|++... .....+++|+......+.+.+ .
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~----------------~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~ 66 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGI----------------EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPT 66 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC----------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC----------------cccCCCCceECceEEEEecCCcccceeeeeecccceeee
Confidence 3689999999999999999987521 111223344444444444443 5
Q ss_pred EEEEecCCCcccchH-------HHHHHhhccCcEEEEEeCCC
Q psy1760 274 RINIIDTPGHADFGG-------EVERILSMVDNVLLLIDAVE 308 (793)
Q Consensus 274 ~i~iiDTPGh~df~~-------ev~~~l~~aD~allVVDa~~ 308 (793)
.++||||||+..+.. ...+.++.+|++++|+|+++
T Consensus 67 ~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 67 TMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred EEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 799999999987642 34456889999999999986
No 202
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.02 E-value=2.4e-10 Score=125.92 Aligned_cols=110 Identities=18% Similarity=0.358 Sum_probs=82.8
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCccc------
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD------ 285 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d------ 285 (793)
.|+|+|.||+|||||+|+|.+.. ......+++|+++....+.+.+.++.|+||||..+
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~----------------~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~ 137 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTE----------------SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGR 137 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBC----------------CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----
T ss_pred eEEEECCCCCCHHHHHHHHhCCC----------------CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhh
Confidence 69999999999999999998652 12244568899999999999999999999999754
Q ss_pred -chHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHc-----CCccEEEEecccCC
Q psy1760 286 -FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL-----GFKPIVVVNKIDRS 338 (793)
Q Consensus 286 -f~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~-----~ip~IvvINKiD~~ 338 (793)
....+...++.||++++|+|++++.. +...+...+... ..|.++++||+|+.
T Consensus 138 ~~g~~~l~~i~~ad~il~vvD~~~p~~-~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 138 GRGKQVIAVARTCNLLFIILDVNKPLH-HKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp CHHHHHHHHHHHCSEEEEEEETTSHHH-HHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHHHHHHhcCccccccccCccHH-HHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 22445667889999999999987421 112222233332 45789999999974
No 203
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=98.99 E-value=5.1e-10 Score=113.31 Aligned_cols=85 Identities=28% Similarity=0.447 Sum_probs=72.3
Q ss_pred CCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEE--e
Q psy1760 406 SNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--T 483 (793)
Q Consensus 406 ~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i--~ 483 (793)
.++||+|+|.+++. +.|+++.|||.+|+|++||.|.+.|. + ...+|++|+.++ .++++|.|||+|++ +
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~--~--~~~~V~~I~~~~----~~~~~A~aGd~V~l~L~ 72 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPN--K--HNVEVLGILSDD----VETDTVAPGENLKIRLK 72 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTT--T--EEEEEEEECSSS----SCBSEECTTSEEEEEEE
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCC--C--CEEEEEEEEECC----EEeEEECCCCEEEEEEc
Confidence 47899999999976 68999999999999999999999987 3 578999999775 68999999999998 6
Q ss_pred ccc--eeecCCeEeCCCCC
Q psy1760 484 GIE--EICIGSTICDPSKP 500 (793)
Q Consensus 484 gl~--~i~iGdtl~~~~~~ 500 (793)
|++ ++.+||+||+++++
T Consensus 73 gi~~~di~rG~vl~~~~~~ 91 (204)
T 3e1y_E 73 GIEEEEILPGFILCDPNNL 91 (204)
T ss_dssp ESSSSCCCTTCEEBCSSSC
T ss_pred CCCHHHCccceEEECCCCC
Confidence 775 68999999998765
No 204
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.93 E-value=3.3e-10 Score=123.53 Aligned_cols=115 Identities=19% Similarity=0.224 Sum_probs=67.3
Q ss_pred eecCeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCCh--hhhH
Q psy1760 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARP--EWVV 346 (793)
Q Consensus 269 ~~~~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~--~~v~ 346 (793)
.+.+..+.|+||||..+-.. .....+|.+++|+|+..+...+.. ... ...++.++++||+|+..... ....
T Consensus 144 ~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i--~~~--i~~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 144 EAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGI--KKG--IFELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp HHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------C--CTT--HHHHCSEEEEECCSTTCCHHHHHHHH
T ss_pred hcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHH--HHH--HhccccEEEEEchhccCchhHHHHHH
Confidence 34688999999999875432 335789999999998654221100 000 01246788999999743210 1112
Q ss_pred hHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 347 DATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 347 ~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
+++...+..+.........|++++||+++. |++.|++.|.+..+
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~----------gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGK----------GLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTB----------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 222222211111001113478999999998 88888888877654
No 205
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.90 E-value=2.5e-09 Score=117.69 Aligned_cols=82 Identities=17% Similarity=0.178 Sum_probs=54.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEe---------------------
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE--------------------- 269 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~--------------------- 269 (793)
.+++|+|.+|+|||||+++|++....... .++.|+........
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~----------------~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~ 65 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAAN----------------YPFATIDKNVGVVPLEDERLYALQRTFAKGERVPP 65 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSS----------------CCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccC----------------CCCceeccceeeEecChHHHHHHHHHhcccccccc
Confidence 36899999999999999999875311100 00111111111111
Q ss_pred ecCeEEEEecCCCcccc-------hHHHHHHhhccCcEEEEEeCCC
Q psy1760 270 YNGTRINIIDTPGHADF-------GGEVERILSMVDNVLLLIDAVE 308 (793)
Q Consensus 270 ~~~~~i~iiDTPGh~df-------~~ev~~~l~~aD~allVVDa~~ 308 (793)
+.+..+.||||||+..+ .....+.++.+|++++|+|+++
T Consensus 66 ~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 66 VVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp EECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 23567999999998764 2345567899999999999986
No 206
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.88 E-value=9.5e-10 Score=125.58 Aligned_cols=173 Identities=17% Similarity=0.167 Sum_probs=95.2
Q ss_pred cceeeeecccCCcceehhhhhhccCcccccc-cccc-----ccccc-hhhccccceEEeeee-------------eEEee
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQ-NINA-----RIMDS-NEIEKERGITIFSKN-------------CSIEY 270 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~-~v~~-----~~~D~-~~~e~erGiTi~~~~-------------~~~~~ 270 (793)
..|+++|++|+|||||+++|........... -+.. ...+. .......++++.... ..+.+
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~~ 181 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHHH
Confidence 4799999999999999999985422110000 0000 00000 011112234332211 11234
Q ss_pred cCeEEEEecCCCccc----chHHHHHHhh--ccCcEEEEEeCCCCCCchhHHHHHHHHHcCCcc-EEEEecccCCCCChh
Q psy1760 271 NGTRINIIDTPGHAD----FGGEVERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNARPE 343 (793)
Q Consensus 271 ~~~~i~iiDTPGh~d----f~~ev~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~-IvvINKiD~~~a~~~ 343 (793)
.++.+.||||||... +..++..... .+|.+++|+||..+.. ....++...+ .+|+ ++|+||+|... +..
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlNK~D~~~-~~g 257 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVTKLDGHA-KGG 257 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEECTTSCC-CCT
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEeCCcccc-chH
Confidence 788999999999763 3344433332 7899999999998753 2233333332 2675 89999999863 333
Q ss_pred hhHhHHHHHHhh----h--ccc-ccc-cCccEEEeecCCCCcccccccccCC-chhhHHHHHhh
Q psy1760 344 WVVDATFDLFDK----L--CAT-EEQ-LDFPVIYTSALHGYANENSKARQGN-MIPLFEAILKY 398 (793)
Q Consensus 344 ~v~~~i~~~~~~----l--~~~-~~~-l~~Pvi~~SA~~g~~~~~~~~~~~g-i~~Ll~~I~~~ 398 (793)
..++ +...+.. + +.. .+. ...|.+++|++.|. | +..|++++.+.
T Consensus 258 ~~l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~----------Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 258 GALS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGM----------GDIEGLIDKVNEL 310 (504)
T ss_dssp HHHH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTT----------TTTTTTHHHHTTT
T ss_pred HHHH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCC----------CcHHHHHHHHHHH
Confidence 3333 2222210 0 000 000 01245667877776 6 89999999665
No 207
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.87 E-value=2.7e-09 Score=119.28 Aligned_cols=164 Identities=16% Similarity=0.186 Sum_probs=76.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 288 (793)
.+|+|+|++|+|||||++.|++........+.. ..+. ...+.+......+...+ ..++++||||+.++..
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~---~~~~-----~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~ 103 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGP---SHRI-----KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD 103 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSC---C----------CCEEEEEECC------CEEEEEEECC-------
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCc---ccCC-----ccceeeeeEEEEEecCCcccceeeeechhhhhhcc
Confidence 468999999999999999998653211110000 0000 00011111111111122 3789999999876532
Q ss_pred ------HH--------HHH-----------h--hccCcEEEEEeCC-CCCCchhHHHHHHHHHcCCccEEEEecccCCCC
Q psy1760 289 ------EV--------ERI-----------L--SMVDNVLLLIDAV-EGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA 340 (793)
Q Consensus 289 ------ev--------~~~-----------l--~~aD~allVVDa~-~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a 340 (793)
.+ ..+ + ..+|++|++++++ .+..+....+++.+.. ++|+|+|+||+|+...
T Consensus 104 ~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 104 NSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTP 182 (418)
T ss_dssp ----CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccH
Confidence 11 111 1 1244577777776 6888777777776654 8899999999998642
Q ss_pred C-hhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 341 R-PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 341 ~-~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
+ .....+++.+.+... .++++.+||+++. +.+.++..|.+.+|
T Consensus 183 ~ev~~~k~~i~~~~~~~-------~i~~~~~sa~~~~----------~v~~~~~~l~~~iP 226 (418)
T 2qag_C 183 EECQQFKKQIMKEIQEH-------KIKIYEFPETDDE----------EENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHHHHH-------TCCCCCCC---------------------------CC
T ss_pred HHHHHHHHHHHHHHHHc-------CCeEEeCCCCCCc----------CHHHHHHHHHhhCC
Confidence 1 111123333333222 4568889998876 66667777765555
No 208
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.81 E-value=8.3e-09 Score=110.72 Aligned_cols=150 Identities=20% Similarity=0.281 Sum_probs=72.6
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeec--CeEEEEecCCCc-----
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGH----- 283 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~--~~~i~iiDTPGh----- 283 (793)
.+|+++|+.|+|||||+++|+.... .+..+ +. .+..... .++.+......+... ...++++||||+
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~-~~~~g-i~---~~g~~~~--~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~ 91 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDL-YPERV-IS---GAAEKIE--RTVQIEASTVEIEERGVKLRLTVVDTPGYGDAIN 91 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-------------------------------CEEEEC---CCEEEEEEEEC-------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCc-cCCCC-cc---cCCcccC--CcceEeeEEEEecCCCcccCcchhhhhhhhhhcC
Confidence 5789999999999999999875311 11111 00 0000000 011111111111212 357899999998
Q ss_pred --ccchHHHH-------HHhhc-------------cCcEEEEEeCCC-CCCchhHHHHHHHHHcCCccEEEEecccCCCC
Q psy1760 284 --ADFGGEVE-------RILSM-------------VDNVLLLIDAVE-GPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA 340 (793)
Q Consensus 284 --~df~~ev~-------~~l~~-------------aD~allVVDa~~-g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a 340 (793)
..|...+. +.++. +++++++++++. +..+.....++.+. .+.++++|+||.|+...
T Consensus 92 ~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 92 CRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTL 170 (301)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCH
Confidence 33333332 33322 233666666544 57777665555553 35789999999998642
Q ss_pred C-hhhhHhHHHHHHhhhcccccccCccEEEeecCCC
Q psy1760 341 R-PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHG 375 (793)
Q Consensus 341 ~-~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g 375 (793)
+ .....+++.+.+... .++++.+||++|
T Consensus 171 ~e~~~~~~~~~~~~~~~-------~~~~~e~Sa~~~ 199 (301)
T 2qnr_A 171 KERERLKKRILDEIEEH-------NIKIYHLPDAES 199 (301)
T ss_dssp HHHHHHHHHHHHHHHHT-------TCCCCCCC----
T ss_pred HHHHHHHHHHHHHHHHc-------CCeEEecCCccc
Confidence 1 111123333333322 457899999998
No 209
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.68 E-value=2.4e-08 Score=101.55 Aligned_cols=166 Identities=18% Similarity=0.206 Sum_probs=89.6
Q ss_pred cceeeeecccCCcceehhhhhhccCcccccccccc---ccccchhhccc--cceEEeee-eeE------------EeecC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA---RIMDSNEIEKE--RGITIFSK-NCS------------IEYNG 272 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~---~~~D~~~~e~e--rGiTi~~~-~~~------------~~~~~ 272 (793)
.+|+++|++|+|||||+++|+.......+...+.. ...|....+.. .-+.+... ... +...+
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~ 118 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNLDE 118 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCGGG
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhcCC
Confidence 58999999999999999999876322111111110 01111111111 00111100 000 01123
Q ss_pred eEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHH
Q psy1760 273 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDL 352 (793)
Q Consensus 273 ~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~ 352 (793)
..+.++||+|....... .-...+..+.|+|+..+....... ....+.|.++|+||+|+...+ ....+++.+.
T Consensus 119 ~d~~~id~~g~i~~~~s---~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~iiv~NK~Dl~~~~-~~~~~~~~~~ 190 (226)
T 2hf9_A 119 IDLLFIENVGNLICPAD---FDLGTHKRIVVISTTEGDDTIEKH----PGIMKTADLIVINKIDLADAV-GADIKKMEND 190 (226)
T ss_dssp CSEEEEECCSCSSGGGG---CCCSCSEEEEEEEGGGCTTTTTTC----HHHHTTCSEEEEECGGGHHHH-TCCHHHHHHH
T ss_pred CCEEEEeCCCCccCcch---hhhccCcEEEEEecCcchhhHhhh----hhHhhcCCEEEEeccccCchh-HHHHHHHHHH
Confidence 47899999994221100 112345667888875543222111 122468899999999986421 0123333333
Q ss_pred HhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 353 FDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 353 ~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
+..+. ...|++++||++|. |+++|++.|.+.+
T Consensus 191 ~~~~~-----~~~~~~~~Sa~~g~----------gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 191 AKRIN-----PDAEVVLLSLKTME----------GFDKVLEFIEKSV 222 (226)
T ss_dssp HHHHC-----TTSEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred HHHhC-----CCCeEEEEEecCCC----------CHHHHHHHHHHHH
Confidence 33321 13579999999998 9999999987655
No 210
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.66 E-value=1.7e-08 Score=110.55 Aligned_cols=131 Identities=13% Similarity=0.099 Sum_probs=91.4
Q ss_pred eEEeeeeeEEeecCeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCC-----------CchhHHHHHHHHH----
Q psy1760 259 ITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-----------MPQTRFVTRKALK---- 323 (793)
Q Consensus 259 iTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~-----------~~qt~~~l~~~~~---- 323 (793)
.|+......+.+++..+.+|||+|+..|...+...++.++++|+|+|.++-- +.....++..+..
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 3444455677888999999999999999999999999999999999998731 1223344444433
Q ss_pred cCCccEEEEecccCCCC------------------ChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCccccccccc
Q psy1760 324 LGFKPIVVVNKIDRSNA------------------RPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQ 385 (793)
Q Consensus 324 ~~ip~IvvINKiD~~~a------------------~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~ 385 (793)
.+.|+|+|.||+|+... +.++..+-+...|.++........++++.+||+++.
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~--------- 329 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTK--------- 329 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHH---------
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCch---------
Confidence 36899999999998521 222333333333434432211235778999999998
Q ss_pred CCchhhHHHHHhhc
Q psy1760 386 GNMIPLFEAILKYV 399 (793)
Q Consensus 386 ~gi~~Ll~~I~~~l 399 (793)
|+..+|+++.+.+
T Consensus 330 -nV~~vF~~v~~~i 342 (353)
T 1cip_A 330 -NVQFVFDAVTDVI 342 (353)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHH
Confidence 8888888887655
No 211
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.52 E-value=2e-07 Score=104.02 Aligned_cols=141 Identities=15% Similarity=0.163 Sum_probs=78.5
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC--eEEEEecCCCcccchH-
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG- 288 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~- 288 (793)
+++|+|++|+|||||++.|++.... +. .......+.++......+...+ ..++++|+||..+...
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~l~----g~--------~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~ 111 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTKFE----GE--------PATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINK 111 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSCC-------------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCH
T ss_pred EEEEECCCCCCHHHHHHHHhCcccc----CC--------cCCCCCccceEeeEEEEeecCccccccchhhhhhhhhcccc
Confidence 6899999999999999999865210 00 0000012223221111222222 2689999999865311
Q ss_pred -------------HHHHHhh-------------c--cC-cEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCC
Q psy1760 289 -------------EVERILS-------------M--VD-NVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN 339 (793)
Q Consensus 289 -------------ev~~~l~-------------~--aD-~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~ 339 (793)
.....+. . +| ++++++|+.+++.+...++++.+. .+.|+|+|+||+|...
T Consensus 112 ~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 112 EDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAIS 190 (427)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSC
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccc
Confidence 1111111 1 12 366788888888888888777776 7889999999999864
Q ss_pred CChhhhHhHHHHHHhh-hcccccccCccEEEeec
Q psy1760 340 ARPEWVVDATFDLFDK-LCATEEQLDFPVIYTSA 372 (793)
Q Consensus 340 a~~~~v~~~i~~~~~~-l~~~~~~l~~Pvi~~SA 372 (793)
. .+ +..+.+.+.. +.. ..++++++|.
T Consensus 191 ~--~E-~~~l~~~I~~~L~~----~gi~I~~is~ 217 (427)
T 2qag_B 191 K--SE-LTKFKIKITSELVS----NGVQIYQFPT 217 (427)
T ss_dssp H--HH-HHHHHHHHHHHHBT----TBCCCCCCC-
T ss_pred h--HH-HHHHHHHHHHHHHH----cCCcEEecCC
Confidence 2 22 2333333322 322 2567888885
No 212
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.51 E-value=5.7e-08 Score=106.75 Aligned_cols=130 Identities=15% Similarity=0.141 Sum_probs=80.7
Q ss_pred EEeeeeeEEeecCeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCC-----------CchhHHHHHHHHH----c
Q psy1760 260 TIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-----------MPQTRFVTRKALK----L 324 (793)
Q Consensus 260 Ti~~~~~~~~~~~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~-----------~~qt~~~l~~~~~----~ 324 (793)
|+......+.+++..+.+|||+|+..|...+...++.++++|+|+|.++-- +.....++..... .
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 333344667788999999999999999888888899999999999998731 1122334444432 3
Q ss_pred CCccEEEEecccCCCC-------------------ChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCccccccccc
Q psy1760 325 GFKPIVVVNKIDRSNA-------------------RPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQ 385 (793)
Q Consensus 325 ~ip~IvvINKiD~~~a-------------------~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~ 385 (793)
+.|+|+|.||+|+... +.++..+-+.+.|..+........++++++||+++.
T Consensus 268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~--------- 338 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTE--------- 338 (362)
T ss_dssp TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHH---------
T ss_pred CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCch---------
Confidence 6899999999998521 122222222233333322111235678999999998
Q ss_pred CCchhhHHHHHhhc
Q psy1760 386 GNMIPLFEAILKYV 399 (793)
Q Consensus 386 ~gi~~Ll~~I~~~l 399 (793)
|+..+++++.+.+
T Consensus 339 -nV~~vF~~v~~~i 351 (362)
T 1zcb_A 339 -NIRLVFRDVKDTI 351 (362)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHH
Confidence 8888888887654
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.51 E-value=9.3e-09 Score=113.49 Aligned_cols=116 Identities=9% Similarity=0.066 Sum_probs=72.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccch---
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG--- 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~--- 287 (793)
.+++++|.+|+|||||+|+|++...... +.......+|+|.......+ + ..+.++||||..+..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~----------~~~~~~~~~gtT~~~~~~~~--~-~~~~liDtPG~~~~~~~~ 229 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKG----------NVITTSYFPGTTLDMIEIPL--E-SGATLYDTPGIINHHQMA 229 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTT----------CCCEEEECTTSSCEEEEEEC--S-TTCEEEECCSCCCCSSGG
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCc----------cceeecCCCCeEEeeEEEEe--C-CCeEEEeCCCcCcHHHHH
Confidence 5899999999999999999987621100 11123345677765544332 2 248999999975432
Q ss_pred ----HHHHHHh---hccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCC
Q psy1760 288 ----GEVERIL---SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN 339 (793)
Q Consensus 288 ----~ev~~~l---~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~ 339 (793)
.+....+ ...|.+++++++...........+..+...+.|+++++||+|...
T Consensus 230 ~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 230 HFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVH 288 (369)
T ss_dssp GGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred HHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccc
Confidence 1222333 678999999998532111111112233445789999999999864
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.40 E-value=5.2e-08 Score=107.41 Aligned_cols=117 Identities=9% Similarity=0.084 Sum_probs=70.2
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccch---
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG--- 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~--- 287 (793)
.+++++|.+|+|||||+|+|++...... .+.......+|+|.......+. ..+.++||||..+..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~---------~~~~~~~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~~ 228 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDET---------ENVITTSHFPGTTLDLIDIPLD---EESSLYDTPGIINHHQMA 228 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSC---------SSCCEEECCC----CEEEEESS---SSCEEEECCCBCCTTSGG
T ss_pred ceEEEecCCCCChhHHHHHHHhhhcccc---------ccceecCCCCCeecceEEEEec---CCeEEEeCCCcCcHHHHH
Confidence 5799999999999999999987631100 0112234556777765544332 238999999975432
Q ss_pred ----HHHHHH---hhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCC
Q psy1760 288 ----GEVERI---LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN 339 (793)
Q Consensus 288 ----~ev~~~---l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~ 339 (793)
.+.... ....+.+++++|+...........+..+...+.|+++++||+|...
T Consensus 229 ~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 229 HYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp GGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred HHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccc
Confidence 111122 3567899999998532111111112233345789999999999875
No 215
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.38 E-value=1.9e-07 Score=103.21 Aligned_cols=83 Identities=20% Similarity=0.229 Sum_probs=50.7
Q ss_pred ccceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC-----------------
Q psy1760 210 DKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG----------------- 272 (793)
Q Consensus 210 e~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~----------------- 272 (793)
...++|+|.+|+|||||+++|.+... .....+++|+......+.+.+
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~----------------~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~ 85 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQA----------------SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIP 85 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-----------------------------CCSEEEEECCCHHHHHHHHHHCCSEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc----------------cccCCCccccCceeEEEEECCccceeeccccCcccccc
Confidence 35799999999999999999986521 122334555555555554433
Q ss_pred eEEEEecCCCcccchH-------HHHHHhhccCcEEEEEeCCC
Q psy1760 273 TRINIIDTPGHADFGG-------EVERILSMVDNVLLLIDAVE 308 (793)
Q Consensus 273 ~~i~iiDTPGh~df~~-------ev~~~l~~aD~allVVDa~~ 308 (793)
..+.+|||||+..+.. .....++.+|++++|+|+++
T Consensus 86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 3599999999876543 45667899999999999975
No 216
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.33 E-value=8e-07 Score=93.72 Aligned_cols=123 Identities=20% Similarity=0.254 Sum_probs=71.8
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccch---
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG--- 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~--- 287 (793)
.+++++|+.|+|||||++.|++..... .+.+.-.-.+.......+++........+ ...++++|+||+.+..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~--~G~i~~~g~~i~~~~~~~~i~~v~q~~~~---~~~ltv~d~~~~g~~~~~~ 77 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSR--KASSWNREEKIPKTVEIKAIGHVIEEGGV---KMKLTVIDTPGFGDQINNE 77 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC-------CCEEEEECCCC--CCSBCT
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCC--CCccccCCcccCcceeeeeeEEEeecCCC---cCCceEEechhhhhhcccH
Confidence 589999999999999999998753211 11110000000000111222221111111 1368999999974311
Q ss_pred ---HHHHHH----------------------hhccCcEEEEEeCC-CCCCchhHHHHHHHHHcCCccEEEEecccCCC
Q psy1760 288 ---GEVERI----------------------LSMVDNVLLLIDAV-EGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN 339 (793)
Q Consensus 288 ---~ev~~~----------------------l~~aD~allVVDa~-~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~ 339 (793)
..+... +..++++++++|.. +|..+.....++.+.+. .++|+|+||+|...
T Consensus 78 ~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 78 NCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMT 154 (270)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCC
Confidence 111111 23358889999954 88899998888888776 89999999999875
No 217
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.27 E-value=5.4e-06 Score=92.35 Aligned_cols=166 Identities=14% Similarity=0.167 Sum_probs=94.0
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC-eEEEEecCCCcccchHHH
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-TRINIIDTPGHADFGGEV 290 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~-~~i~iiDTPGh~df~~ev 290 (793)
.++|+|++|+|||||++.|++.... ..+.+. .+..+..+ .++ .+.... ..++++|+||...-...+
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~---~~g~~~t~-~~~-------v~q~~~~~~ltv~D~~g~~~~~~~~ 137 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNE--EEGAAK---TGVVEVTM-ERH-------PYKHPNIPNVVFWDLPGIGSTNFPP 137 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTT--STTSCC---CCC----C-CCE-------EEECSSCTTEEEEECCCGGGSSCCH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCc--cCceEE---ECCeecce-eEE-------eccccccCCeeehHhhcccchHHHH
Confidence 7899999999999999999874211 011110 01111111 121 111111 258999999964221222
Q ss_pred HHH-----hhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCC-------CCC---hhhhHhHHHHHHhh
Q psy1760 291 ERI-----LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS-------NAR---PEWVVDATFDLFDK 355 (793)
Q Consensus 291 ~~~-----l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~-------~a~---~~~v~~~i~~~~~~ 355 (793)
... +...|..++ +|... .+.|...+.+.+...+.|+++|+||.|.. .-+ ..++.+.++++..+
T Consensus 138 ~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 138 DTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 333 233354444 77654 46677777777778899999999999974 111 22333333333210
Q ss_pred -hcccccccCccEEEeec--CCCCcccccccccCCchhhHHHHHhhcCcCc
Q psy1760 356 -LCATEEQLDFPVIYTSA--LHGYANENSKARQGNMIPLFEAILKYVPVHK 403 (793)
Q Consensus 356 -l~~~~~~l~~Pvi~~SA--~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 403 (793)
+.... ...-.++.+|+ ..+. |++.|.+.|.+.+|...
T Consensus 216 ~l~~~g-~~~~~iiliSsh~l~~~----------~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 216 TFRENG-IAEPPIFLLSNKNVCHY----------DFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHTT-CSSCCEEECCTTCTTST----------THHHHHHHHHHHSCGGG
T ss_pred HHHhcC-CCCCcEEEEecCcCCcc----------CHHHHHHHHHHhCccch
Confidence 01100 00125789999 4544 79999999999997643
No 218
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.24 E-value=1e-06 Score=94.34 Aligned_cols=129 Identities=19% Similarity=0.149 Sum_probs=88.6
Q ss_pred EEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCC-Cch-hHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHH
Q psy1760 274 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-MPQ-TRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFD 351 (793)
Q Consensus 274 ~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~-~~q-t~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~ 351 (793)
.+.+||| +..|......+++.+|++|+|+|+++.. ... ...++..+...++|+++|+||+|+.+.+ . +++..+
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~--~-v~~~~~ 138 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDED--D-LRKVRE 138 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHH--H-HHHHHH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCch--h-HHHHHH
Confidence 7899999 8888777777899999999999999753 222 2334455566789999999999996532 2 233333
Q ss_pred HHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEE
Q psy1760 352 LFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRI 431 (793)
Q Consensus 352 ~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV 431 (793)
....+.. . ++++++||++|. |++++++.+.. . +.-+.-.++.|+-++.+.
T Consensus 139 ~~~~~~~----~-~~~~~~SAktg~----------gv~~lf~~l~g-----------e----iv~l~G~sG~GKSTll~~ 188 (301)
T 1u0l_A 139 LEEIYSG----L-YPIVKTSAKTGM----------GIEELKEYLKG-----------K----ISTMAGLSGVGKSSLLNA 188 (301)
T ss_dssp HHHHHTT----T-SCEEECCTTTCT----------THHHHHHHHSS-----------S----EEEEECSTTSSHHHHHHH
T ss_pred HHHHHhh----h-CcEEEEECCCCc----------CHHHHHHHhcC-----------C----eEEEECCCCCcHHHHHHH
Confidence 3332221 1 679999999998 88889887632 1 222334566777666666
Q ss_pred eecccc
Q psy1760 432 LSGRIK 437 (793)
Q Consensus 432 ~sG~lk 437 (793)
..|.++
T Consensus 189 l~g~~~ 194 (301)
T 1u0l_A 189 INPGLK 194 (301)
T ss_dssp HSTTCC
T ss_pred hccccc
Confidence 666554
No 219
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.23 E-value=1.5e-06 Score=97.70 Aligned_cols=65 Identities=26% Similarity=0.376 Sum_probs=42.4
Q ss_pred cCeEEEEecCCCcccchHHHHH----H--hhccCcEEEEEeCCCCCCchhHHHHHHHHHcCC-c-cEEEEecccCC
Q psy1760 271 NGTRINIIDTPGHADFGGEVER----I--LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF-K-PIVVVNKIDRS 338 (793)
Q Consensus 271 ~~~~i~iiDTPGh~df~~ev~~----~--l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~i-p-~IvvINKiD~~ 338 (793)
.++.+.||||||.......... . +..+|.+++|+||..|. ......+.. ..++ | ..+|+||+|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~-~~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAF-KEAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHH-HTTSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHH-hhcccCCeEEEEeCCCCc
Confidence 5778999999997654333222 2 12579999999998763 222222222 2246 6 68999999985
No 220
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.22 E-value=1.1e-06 Score=94.92 Aligned_cols=132 Identities=14% Similarity=0.142 Sum_probs=91.1
Q ss_pred cceEEeeeeeEEeecCeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCC-------CCCCc----hhHHHHHHHHH--
Q psy1760 257 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAV-------EGPMP----QTRFVTRKALK-- 323 (793)
Q Consensus 257 rGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~-------~g~~~----qt~~~l~~~~~-- 323 (793)
+.-|+......+.+++.++.+|||+|+..|...+...++.++++|+|+|.+ +.... ....++..+..
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 334555566778889999999999999999888888999999999999876 22111 23334444432
Q ss_pred --cCCccEEEEecccCCCC-------------------ChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccc
Q psy1760 324 --LGFKPIVVVNKIDRSNA-------------------RPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSK 382 (793)
Q Consensus 324 --~~ip~IvvINKiD~~~a-------------------~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~ 382 (793)
.+.|+|+|.||+|+... +.++..+-+.+.|..+... ....+.+.++||+++.
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~-~~~~i~~~~TsA~d~~------ 303 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPD-SDKIIYSHFTCATDTE------ 303 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTT-TTSCEEEEECCTTCHH------
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhccc-ccCCcEEEEEEeecCH------
Confidence 36889999999998532 2333333344444444322 2234667889999987
Q ss_pred cccCCchhhHHHHHhhc
Q psy1760 383 ARQGNMIPLFEAILKYV 399 (793)
Q Consensus 383 ~~~~gi~~Ll~~I~~~l 399 (793)
|++.+++.+.+.+
T Consensus 304 ----nV~~vF~~v~~~I 316 (327)
T 3ohm_A 304 ----NIRFVFAAVKDTI 316 (327)
T ss_dssp ----HHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHH
Confidence 8888888887655
No 221
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.20 E-value=7.8e-07 Score=98.69 Aligned_cols=80 Identities=11% Similarity=0.111 Sum_probs=60.1
Q ss_pred EEeeeeeEEeecCeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCC-------C----CchhHHHHHHHHH----c
Q psy1760 260 TIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-------P----MPQTRFVTRKALK----L 324 (793)
Q Consensus 260 Ti~~~~~~~~~~~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g-------~----~~qt~~~l~~~~~----~ 324 (793)
|+......+.+++..+.||||+|+..|...+...++.++++|+|+|.++- . +.....++..+.. .
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 44344466778899999999999999999999999999999999999861 1 1122334444433 3
Q ss_pred CCccEEEEecccCCC
Q psy1760 325 GFKPIVVVNKIDRSN 339 (793)
Q Consensus 325 ~ip~IvvINKiD~~~ 339 (793)
++|+|+|.||+|+..
T Consensus 284 ~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 284 TISVILFLNKQDLLA 298 (402)
T ss_dssp SCCEEEEEECHHHHH
T ss_pred CCeEEEEEEChhhhh
Confidence 578899999999853
No 222
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.20 E-value=7.6e-07 Score=96.62 Aligned_cols=133 Identities=16% Similarity=0.165 Sum_probs=88.5
Q ss_pred cceEEeeeeeEEeecCeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCC-------CC----CchhHHHHHHHHH--
Q psy1760 257 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVE-------GP----MPQTRFVTRKALK-- 323 (793)
Q Consensus 257 rGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~-------g~----~~qt~~~l~~~~~-- 323 (793)
+..|+......+.+++..+.+|||+|+..|...+...++.++++|+|+|.++ .. +.....+|..+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 3345556667788889999999999999999999999999999999999972 11 1122334444432
Q ss_pred --cCCccEEEEecccCCCC------------------ChhhhHhHHHHHH------hhhccccc----------ccCccE
Q psy1760 324 --LGFKPIVVVNKIDRSNA------------------RPEWVVDATFDLF------DKLCATEE----------QLDFPV 367 (793)
Q Consensus 324 --~~ip~IvvINKiD~~~a------------------~~~~v~~~i~~~~------~~l~~~~~----------~l~~Pv 367 (793)
.+.|+|+|.||+|+... +.++..+-+.+.| ..+..... ...+.+
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~ 304 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYT 304 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEE
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEE
Confidence 46789999999998532 1233333344444 22221111 024668
Q ss_pred EEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 368 IYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 368 i~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
.++||+... +++.+|+.+.+.+
T Consensus 305 h~TsA~dt~----------nv~~vF~~v~~~I 326 (340)
T 4fid_A 305 NPTNATDGS----------NIKRVFMLAVDVI 326 (340)
T ss_dssp EEECTTCHH----------HHHHHHHHHHHHH
T ss_pred EEEEeeCcH----------HHHHHHHHHHHHH
Confidence 899999987 7777777766544
No 223
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.15 E-value=2e-06 Score=96.38 Aligned_cols=154 Identities=18% Similarity=0.197 Sum_probs=82.1
Q ss_pred cceeeeecccCCcceehhhhhhccCcccccccc-c------cccccchhhccccceEEeeee-------------eEEee
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNI-N------ARIMDSNEIEKERGITIFSKN-------------CSIEY 270 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v-~------~~~~D~~~~e~erGiTi~~~~-------------~~~~~ 270 (793)
..|+++|++|+||||++..|............+ . ..+-.-.......|+...... ..+.+
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~ 177 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVK 177 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHHh
Confidence 468999999999999999887432110000000 0 000000000111122221110 11223
Q ss_pred cCeEEEEecCCCccc------chHHHHHHhh--ccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCCh
Q psy1760 271 NGTRINIIDTPGHAD------FGGEVERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARP 342 (793)
Q Consensus 271 ~~~~i~iiDTPGh~d------f~~ev~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~ 342 (793)
.++.+.||||||... +..++....+ ..|.++||+||..|.. .....+...+.-.+..|++||+|.. ++.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~--a~~~a~~f~~~~~~~gVIlTKlD~~-a~~ 254 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK--AYDLASRFHQASPIGSVIITKMDGT-AKG 254 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--GHHHHHHHHHHCSSEEEEEECGGGC-SCH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH--HHHHHHHHhcccCCcEEEEeccccc-ccc
Confidence 478899999999644 3444444322 3599999999987622 2223333332224468999999986 344
Q ss_pred hhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccc
Q psy1760 343 EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANEN 380 (793)
Q Consensus 343 ~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~ 380 (793)
...++.... ...|+.+++. |....+
T Consensus 255 G~als~~~~-----------~g~Pi~fig~--Ge~v~d 279 (433)
T 3kl4_A 255 GGALSAVVA-----------TGATIKFIGT--GEKIDE 279 (433)
T ss_dssp HHHHHHHHH-----------HTCEEEEEEC--CSSSSC
T ss_pred hHHHHHHHH-----------HCCCEEEEEC--CCChHh
Confidence 433332221 1578999986 655543
No 224
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.13 E-value=2.2e-06 Score=94.96 Aligned_cols=83 Identities=14% Similarity=0.220 Sum_probs=60.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecC-----------------e
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-----------------T 273 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~-----------------~ 273 (793)
..++|+|++|+|||||+++|++... ......+++|+......+.+.+ .
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~~~---------------a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~ 85 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKSVL---------------GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPA 85 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTT---------------TSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc---------------ccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCc
Confidence 5799999999999999999987421 1122334555555555555554 4
Q ss_pred EEEEecCCCccc-------chHHHHHHhhccCcEEEEEeCCC
Q psy1760 274 RINIIDTPGHAD-------FGGEVERILSMVDNVLLLIDAVE 308 (793)
Q Consensus 274 ~i~iiDTPGh~d-------f~~ev~~~l~~aD~allVVDa~~ 308 (793)
.+.++||||+.. +.......++.+|.+++|+|+.+
T Consensus 86 ~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 86 FLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 689999999643 34466677899999999999976
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.10 E-value=5.4e-06 Score=92.90 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=80.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccch---------hhccccceEEeeeee-------------EE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSN---------EIEKERGITIFSKNC-------------SI 268 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~---------~~e~erGiTi~~~~~-------------~~ 268 (793)
..|.++|.+|+||||++..|......... .+.-.-.|.. ......|+.+..... ..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~--kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGY--KVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTC--CEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCC--eEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998753211100 0000000000 111122333221110 11
Q ss_pred eecCeEEEEecCCCcccchH----HHHH--HhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCCh
Q psy1760 269 EYNGTRINIIDTPGHADFGG----EVER--ILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARP 342 (793)
Q Consensus 269 ~~~~~~i~iiDTPGh~df~~----ev~~--~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~ 342 (793)
...++.+.||||||...... ++.. ....+|.++||+||..|.. .....+...+.-....||+||+|.... .
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~--a~~~a~~f~~~~~i~gVIlTKlD~~~~-g 255 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ--AYNQALAFKEATPIGSIIVTKLDGSAK-G 255 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHHSCTTEEEEEECCSSCSS-H
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh--HHHHHHHHHhhCCCeEEEEECCCCccc-c
Confidence 12458899999999644322 2222 1335799999999987522 222233333222234689999998632 2
Q ss_pred hhhHhHHHHHHhhhcccccccCccEEEeecCCCCccccc
Q psy1760 343 EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENS 381 (793)
Q Consensus 343 ~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~ 381 (793)
...++ ... ....|+.|++. |.++.++
T Consensus 256 G~~ls----~~~-------~~g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 256 GGALS----AVA-------ATGAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp HHHHH----HHH-------TTCCCEEEEEC--SSSTTCE
T ss_pred cHHHH----HHH-------HHCCCEEEEEc--CCChHHh
Confidence 22221 111 23578999986 6555544
No 226
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.09 E-value=7.8e-06 Score=86.66 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=70.2
Q ss_pred EecCCCcc-cchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhh
Q psy1760 277 IIDTPGHA-DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDK 355 (793)
Q Consensus 277 iiDTPGh~-df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~ 355 (793)
|-+.|||. ....++.+.+..+|+++.|+||.++.......+-+.+ .+.|.++|+||+|+.. .+..+...+.+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~---~~~~~~~~~~~~~ 77 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKAD---AAVTQQWKEHFEN 77 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSC---HHHHHHHHHHHHT
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCC---HHHHHHHHHHHHh
Confidence 44679997 5678888999999999999999987655433333333 4789999999999975 2233333444432
Q ss_pred hcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcC
Q psy1760 356 LCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400 (793)
Q Consensus 356 l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp 400 (793)
.++|++++||+++. |+..|++.+.+.++
T Consensus 78 -------~g~~~i~iSA~~~~----------gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 78 -------QGIRSLSINSVNGQ----------GLNQIVPASKEILQ 105 (282)
T ss_dssp -------TTCCEEECCTTTCT----------TGGGHHHHHHHHHH
T ss_pred -------cCCcEEEEECCCcc----------cHHHHHHHHHHHHH
Confidence 24579999999998 88889988876664
No 227
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.02 E-value=1.8e-06 Score=94.52 Aligned_cols=119 Identities=15% Similarity=0.159 Sum_probs=74.9
Q ss_pred cCeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCC-------CCC----chhHHHHHHHHH----cCCccEEEEecc
Q psy1760 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVE-------GPM----PQTRFVTRKALK----LGFKPIVVVNKI 335 (793)
Q Consensus 271 ~~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~-------g~~----~qt~~~l~~~~~----~~ip~IvvINKi 335 (793)
+...+.||||+|+..|...+...++.+|++|+|+|.++ ... .....++..+.. .+.|+|+|.||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 35789999999999999999889999999999999871 111 122334444432 368899999999
Q ss_pred cCCCCChh--------------------hhHhHHHHHHh----hhc---ccc--cccCccEEEeecCCCCcccccccccC
Q psy1760 336 DRSNARPE--------------------WVVDATFDLFD----KLC---ATE--EQLDFPVIYTSALHGYANENSKARQG 386 (793)
Q Consensus 336 D~~~a~~~--------------------~v~~~i~~~~~----~l~---~~~--~~l~~Pvi~~SA~~g~~~~~~~~~~~ 386 (793)
|+...+.. ...++..+++. .+. ... ....++++.+||+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~---------- 330 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQK---------- 330 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHH----------
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecch----------
Confidence 98432100 01222222222 120 000 0123457899999998
Q ss_pred CchhhHHHHHhhc
Q psy1760 387 NMIPLFEAILKYV 399 (793)
Q Consensus 387 gi~~Ll~~I~~~l 399 (793)
|++.+|+.+.+.+
T Consensus 331 nV~~vF~~v~~~I 343 (354)
T 2xtz_A 331 LVKKTFKLVDETL 343 (354)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8888888876654
No 228
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domai; HET: EPE; 2.0A {Homo sapiens}
Probab=98.02 E-value=2e-06 Score=96.79 Aligned_cols=94 Identities=26% Similarity=0.273 Sum_probs=80.8
Q ss_pred cCCceEEEEEEEceeeccCCCcceEeeccCCCCCCHHHHHHHHHHhHh-hhcCCCcccccccccCcchhhhhccCccccc
Q psy1760 69 EADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHG-KISQIPPMYSALKYKGIPLYKYARSGITIKR 147 (793)
Q Consensus 69 ~~~K~Y~~~~~~g~~t~t~d~~g~~~~~~~~~~~t~~~~~~al~~~~G-~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~ 147 (793)
...|+|+|.+++. .++++++++++.. |.| .|.|.||.-++ ..|
T Consensus 410 ~~~K~Y~alv~~~------------------~~v~~e~l~~~~~-l~~l~I~QrtP~RV~-----------------hRR 453 (530)
T 2v9k_A 410 EKTKTYSALIWTN------------------KAIQKKDIEFLND-IKDLKIDQKTPLRVL-----------------HRR 453 (530)
T ss_dssp HCCEEEEEEEEES------------------SCCCHHHHGGGGG-CCSEEEEEECCGGGT-----------------TTS
T ss_pred cCCeEEEEEEEEc------------------CCCCHHHHHHHHh-cCCceeeccCCeEEE-----------------Eec
Confidence 4679999999987 4577899998877 999 99999999999 355
Q ss_pred cc--eeEEEEEEEEEeecCCceeeEEeccchhHHHHHHH-H-------HhhhhccchHHHH
Q psy1760 148 KL--RYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSE-D-------IGKMLGCGAHLKY 198 (793)
Q Consensus 148 ~~--r~v~i~~~~~~d~~~~~~~~~~~~s~gtyIRsL~~-d-------Ig~~L~~~a~l~~ 198 (793)
+. |.-.||++++...++..+.+++.|..||||+.|++ | |+..|++++++..
T Consensus 454 ~~~~R~R~I~~i~~~~~~~~~~~l~i~~eaGtYIKelvhGD~GRT~Psl~~lLg~~a~i~e 514 (530)
T 2v9k_A 454 PLAVRARVIHFMETQYVDEHHFRLHLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADILE 514 (530)
T ss_dssp CCCEEEEEEEEEEEEEEETTEEEEEEEECTTCCHHHHHHCTTTTEESCHHHHHTSCEEEEE
T ss_pred CCCccceEEEEEEEEEecCCEEEEEEEecCCCEEEEEEcCCCCCcCCcHHHHhCCCcEEEE
Confidence 54 99999999999998889999999999999999999 7 8888887766533
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.92 E-value=1.1e-05 Score=86.29 Aligned_cols=123 Identities=20% Similarity=0.193 Sum_probs=68.4
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccc---------hhhccccceEEeeee-------------eEE
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDS---------NEIEKERGITIFSKN-------------CSI 268 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~---------~~~e~erGiTi~~~~-------------~~~ 268 (793)
..++++|++|+||||++..|........ ..+.-.-.|. .......|+.+.... ..+
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g--~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~ 176 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKG--FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKF 176 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTT--CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 4678999999999999998875421100 0000000000 000111233322110 011
Q ss_pred eecCeEEEEecCCCccc--chHHHH------HHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCc-cEEEEecccCC
Q psy1760 269 EYNGTRINIIDTPGHAD--FGGEVE------RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRS 338 (793)
Q Consensus 269 ~~~~~~i~iiDTPGh~d--f~~ev~------~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip-~IvvINKiD~~ 338 (793)
.+.++.+.||||||... ....+. ..+..+|.+++|+|+..+ .+.....+.... .++ ..+|+||+|..
T Consensus 177 ~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 177 LSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGT 252 (297)
T ss_dssp HHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGC
T ss_pred HhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCC
Confidence 23578899999999776 332222 235578999999999764 223333333333 467 46899999975
No 230
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.86 E-value=1e-05 Score=86.68 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=60.1
Q ss_pred HHhhccCcEEEEEeCCCCC-Cchh-HHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEE
Q psy1760 292 RILSMVDNVLLLIDAVEGP-MPQT-RFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIY 369 (793)
Q Consensus 292 ~~l~~aD~allVVDa~~g~-~~qt-~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~ 369 (793)
.+++.+|.+++|+|+++.. .... ..++..+...++|+++|+||+|+.+.+.....++..+.+..+ .+++++
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~-------g~~~~~ 147 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDA-------GYDVLK 147 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT-------TCEEEE
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHC-------CCeEEE
Confidence 4688999999999999764 3332 345556667899999999999996421001123333333322 467999
Q ss_pred eecCCCCcccccccccCCchhhHHHH
Q psy1760 370 TSALHGYANENSKARQGNMIPLFEAI 395 (793)
Q Consensus 370 ~SA~~g~~~~~~~~~~~gi~~Ll~~I 395 (793)
+||++|. |+++|++.+
T Consensus 148 ~SA~~g~----------gi~~L~~~l 163 (302)
T 2yv5_A 148 VSAKTGE----------GIDELVDYL 163 (302)
T ss_dssp CCTTTCT----------THHHHHHHT
T ss_pred EECCCCC----------CHHHHHhhc
Confidence 9999998 788787765
No 231
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.79 E-value=9.8e-06 Score=94.03 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=60.1
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEE-eecCeEEEEecCCCcccchH-
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSI-EYNGTRINIIDTPGHADFGG- 288 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~-~~~~~~i~iiDTPGh~df~~- 288 (793)
..|+|+|.+|+|||||+|+|++....+...+. .....+|+.... ..+ ...+..+.|+||||..+...
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~~~~~~~~t---------t~~~T~gi~~~~--~~~~~~~~~~i~LiDTpGi~~~~~~ 107 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGST---------VQSHTKGIWMWC--VPHPKKPGHILVLLDTEGLGDVEKG 107 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCS---------SSCCCCSEEEEE--EECSSSTTCEEEEEEECCBCCGGGC
T ss_pred cEEEEECCCCCCHHHHHHhHcCCCCccccCCC---------CCCceeEEEEee--cccccCCCceEEEecCCCcCccccc
Confidence 47899999999999999999876322211000 001111221100 000 12567899999999875432
Q ss_pred ----HHH-HHhhccCcEEEEEeCCCCCCchhHHHHHHHHHc
Q psy1760 289 ----EVE-RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL 324 (793)
Q Consensus 289 ----ev~-~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~ 324 (793)
.+. -++...-..++|+|+..++..+....+..+...
T Consensus 108 ~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~ 148 (592)
T 1f5n_A 108 DNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTEL 148 (592)
T ss_dssp CCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTH
T ss_pred chhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHHH
Confidence 111 112332234788898888888877766666544
No 232
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.73 E-value=4.5e-05 Score=83.90 Aligned_cols=108 Identities=20% Similarity=0.116 Sum_probs=68.3
Q ss_pred EEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCC--hhhhHhHHHHH
Q psy1760 275 INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR--PEWVVDATFDL 352 (793)
Q Consensus 275 i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~--~~~v~~~i~~~ 352 (793)
+.-+++| +.+|......+...+|++|+|+|+.+........+.+.+ .+.|+++|+||+|+.... .+...+.+.+.
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~ 127 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRM 127 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHH
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHH
Confidence 3444554 678888888888999999999999985432222222222 267999999999997542 22233333333
Q ss_pred HhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 353 FDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 353 ~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
+...+.. ..+++++||++|+ |+++|++.|.+..
T Consensus 128 ~~~~g~~----~~~v~~iSA~~g~----------gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 128 AEELGLC----PVDVCLVSAAKGI----------GMAKVMEAINRYR 160 (369)
T ss_dssp HHTTTCC----CSEEEECBTTTTB----------THHHHHHHHHHHH
T ss_pred HHHcCCC----cccEEEEECCCCC----------CHHHHHHHHHhhc
Confidence 4433321 1258999999998 8999999987654
No 233
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=97.66 E-value=0.00017 Score=64.97 Aligned_cols=78 Identities=22% Similarity=0.195 Sum_probs=58.4
Q ss_pred CCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--c
Q psy1760 407 NNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--G 484 (793)
Q Consensus 407 ~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--g 484 (793)
..|-.+.|..+..-=| |.+..|||.+|+|++|+.| +. +. ...+|++|+. +.+++++|.|||.|+++ |
T Consensus 32 ~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg--~~-~vg~VkSIE~----~~e~v~eA~~GdnVai~Ikg 100 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KG--PS-GIGGIVRIER----NREKVEFAIAGDRIGISIEG 100 (116)
T ss_dssp SCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---EC--SS-CEEEEEEEEE----TTEEESEEETTCEEEEEEES
T ss_pred cCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CC--Cc-eEEEEEEEEE----CCcCcCCcCCCCEEEEEEEC
Confidence 3466666666333334 8899999999999999998 44 10 3577888885 34899999999999984 5
Q ss_pred cc-eeecCCeEe
Q psy1760 485 IE-EICIGSTIC 495 (793)
Q Consensus 485 l~-~i~iGdtl~ 495 (793)
.. +++.||+|-
T Consensus 101 ~~~~I~~GdVLy 112 (116)
T 1xe1_A 101 KIGKVKKGDVLE 112 (116)
T ss_dssp CCCCCCTTCEEE
T ss_pred CccccCCCcEEE
Confidence 44 788888874
No 234
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.64 E-value=1.9e-05 Score=83.66 Aligned_cols=57 Identities=28% Similarity=0.378 Sum_probs=34.7
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCccc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD 285 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d 285 (793)
.+++++|.+|+|||||+|+|++... ......+|+|....... . +..+.++||||..+
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~---------------~~~~~~~g~T~~~~~~~--~-~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNI---------------AKTGDRPGITTSQQWVK--V-GKELELLDTPGILW 177 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC---------------C------------CCEE--E-TTTEEEEECCCCCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCce---------------eecCCCCCeeeeeEEEE--e-CCCEEEEECcCcCC
Confidence 4799999999999999999986521 22333457776654322 2 45799999999754
No 235
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.63 E-value=8.6e-05 Score=83.32 Aligned_cols=125 Identities=15% Similarity=0.180 Sum_probs=68.6
Q ss_pred cceeeeecccCCcceehhhhhhccCcc-cccccc-c-----cccccch-hhccccceEEeeee-------------eEEe
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTF-RKNQNI-N-----ARIMDSN-EIEKERGITIFSKN-------------CSIE 269 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~-~~~~~v-~-----~~~~D~~-~~e~erGiTi~~~~-------------~~~~ 269 (793)
+.|+++|+.|+||||++..|....... .....+ . ....+.. ......|+.+.... ..+.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~ 180 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999987542211 110000 0 0000000 01122333332211 1122
Q ss_pred ecCeEEEEecCCCcccchHHHHHH------hhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCcc-EEEEecccCC
Q psy1760 270 YNGTRINIIDTPGHADFGGEVERI------LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRS 338 (793)
Q Consensus 270 ~~~~~i~iiDTPGh~df~~ev~~~------l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~-IvvINKiD~~ 338 (793)
+.++.+.||||||...+...+... +..+|.+++|+|+..+. ......+... .++++ -+|+||+|..
T Consensus 181 ~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~-~~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAFN-EALPLTGVVLTKVDGD 253 (433)
T ss_dssp HTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHHH-HHSCCCCEEEECTTSS
T ss_pred hCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHHh-ccCCCeEEEEecCCCC
Confidence 357889999999976654444332 34678999999998762 1222222221 23553 4799999975
No 236
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.61 E-value=0.00017 Score=72.38 Aligned_cols=112 Identities=13% Similarity=-0.007 Sum_probs=66.5
Q ss_pred EEEEecCC------CcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHH----HHHH----cCCccEEEEecc-cCC
Q psy1760 274 RINIIDTP------GHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTR----KALK----LGFKPIVVVNKI-DRS 338 (793)
Q Consensus 274 ~i~iiDTP------Gh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~----~~~~----~~ip~IvvINKi-D~~ 338 (793)
++..-.+| |+..+...+..++..+|++|+|||+++.-....+.-+. .+.+ .+.|.+|+.||. |.+
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 44555566 66667777889999999999999998763333444332 1211 467999999996 777
Q ss_pred CCChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 339 NARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 339 ~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
++-. ..++.+.+. +..- ...+-|..+||++|. |+.+-+++|.+.+..
T Consensus 177 ~Ams---~~EI~e~L~-L~~l--~R~W~Iq~csA~TGe----------GL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 177 KRMP---CFYLAHELH-LNLL--NHPWLVQDTEAETLT----------GFLNGIEWILEEVES 223 (227)
T ss_dssp CBCC---HHHHHHHTT-GGGG--CSCEEEEEEETTTCT----------THHHHHHHHTTTTTT
T ss_pred CCCC---HHHHHHHcC-CcCC--CCCEEEEEeECCCCc----------CHHHHHHHHHHHHHh
Confidence 6522 223333332 1111 135679999999998 999999999877643
No 237
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.60 E-value=3.5e-05 Score=80.71 Aligned_cols=93 Identities=19% Similarity=0.208 Sum_probs=61.8
Q ss_pred CCCcccc-hHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcc
Q psy1760 280 TPGHADF-GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA 358 (793)
Q Consensus 280 TPGh~df-~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~ 358 (793)
-|||... ..++...+..+|.++.|+||.++.......+ ..+ ++|.++|+||+|+.+. +..++..+.+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~ll---~k~~iivlNK~DL~~~---~~~~~~~~~~~~--- 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-DFS---RKETIILLNKVDIADE---KTTKKWVEFFKK--- 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-CCT---TSEEEEEEECGGGSCH---HHHHHHHHHHHH---
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-Hhc---CCCcEEEEECccCCCH---HHHHHHHHHHHH---
Confidence 3898754 4678889999999999999998655432211 112 8999999999999752 223333444432
Q ss_pred cccccCccEEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 359 TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 359 ~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
.++|+ ++||+++. |++.|++.|.+
T Consensus 74 ----~g~~v-~iSa~~~~----------gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 ----QGKRV-ITTHKGEP----------RKVLLKKLSFD 97 (262)
T ss_dssp ----TTCCE-EECCTTSC----------HHHHHHHHCCC
T ss_pred ----cCCeE-EEECCCCc----------CHHHHHHHHHH
Confidence 24578 99999998 88888887743
No 238
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.48 E-value=0.0001 Score=81.04 Aligned_cols=101 Identities=21% Similarity=0.037 Sum_probs=64.9
Q ss_pred cccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCC--hhhhHhHHHHHHhhhcccc
Q psy1760 283 HADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR--PEWVVDATFDLFDKLCATE 360 (793)
Q Consensus 283 h~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~--~~~v~~~i~~~~~~l~~~~ 360 (793)
..+|...+..+.+.+|++|+|+|+.+........+.+.+ .+.|+++|+||+|+.... .++..+.+...+...+..
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~- 132 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLK- 132 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCC-
Confidence 457888787788888999999999873211111111111 278999999999996532 122222223333333321
Q ss_pred cccCccEEEeecCCCCcccccccccCCchhhHHHHHhhc
Q psy1760 361 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399 (793)
Q Consensus 361 ~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~l 399 (793)
..+++++||++|+ |+++|++.|.+..
T Consensus 133 ---~~~v~~iSA~~g~----------gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 133 ---PEDVFLISAAKGQ----------GIAELADAIEYYR 158 (368)
T ss_dssp ---CSEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred ---cccEEEEeCCCCc----------CHHHHHhhhhhhc
Confidence 1268999999998 9999999986654
No 239
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.44 E-value=0.00016 Score=78.14 Aligned_cols=165 Identities=18% Similarity=0.255 Sum_probs=82.5
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccc---cccccchh------hccccceEEeeeeeEE-------------
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN---ARIMDSNE------IEKERGITIFSKNCSI------------- 268 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~---~~~~D~~~------~e~erGiTi~~~~~~~------------- 268 (793)
.-++++|+.|+|||||+..|.+.... ..+.+. ........ ..+..|+.+.......
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 36899999999999999998764211 111110 00000000 0111232221110000
Q ss_pred eecCeEEEEecCCCcccc----hHHHHHH--hhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCCh
Q psy1760 269 EYNGTRINIIDTPGHADF----GGEVERI--LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARP 342 (793)
Q Consensus 269 ~~~~~~i~iiDTPGh~df----~~ev~~~--l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~ 342 (793)
...++.+.++||+|.... ..++... .-..|-.++++|+..+. +....++...+.--..++++||+|.. ++.
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD~~-a~~ 284 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLDAD-ARG 284 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGGGC-SCC
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcCCc-cch
Confidence 012456788999996432 2333221 12368899999988762 22333333332112348899999973 333
Q ss_pred hhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHH
Q psy1760 343 EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAI 395 (793)
Q Consensus 343 ~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I 395 (793)
...++-+.. ...|+.+++ .|..+.++. ..+-+.+.+.|
T Consensus 285 G~~l~~~~~-----------~~~pi~~i~--~Ge~v~dl~--~~~~~~~~~~l 322 (328)
T 3e70_C 285 GAALSISYV-----------IDAPILFVG--VGQGYDDLR--PFEKEWFLERI 322 (328)
T ss_dssp HHHHHHHHH-----------HTCCEEEEE--CSSSTTCEE--ECCHHHHHHHH
T ss_pred hHHHHHHHH-----------HCCCEEEEe--CCCCccccc--cCCHHHHHHHH
Confidence 333332221 146899988 555443322 12334455544
No 240
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.29 E-value=5.7e-05 Score=79.12 Aligned_cols=58 Identities=24% Similarity=0.360 Sum_probs=36.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 286 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 286 (793)
.+++++|.+|+|||||+|+|++.... ......|+|..... +.. +..+.+|||||..+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~---------------~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS---------------SVGAQPGITKGIQW--FSL-ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-------------------------CCSCE--EEC-TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc---------------ccCCCCCCccceEE--EEe-CCCEEEEECCCcccC
Confidence 37899999999999999999865221 11223455554322 222 357899999998764
No 241
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.15 E-value=0.0015 Score=68.78 Aligned_cols=105 Identities=13% Similarity=0.009 Sum_probs=70.4
Q ss_pred CCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHH----HH---HH-cCCccEEEEec-ccCCCCChhhhHhHHHH
Q psy1760 281 PGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTR----KA---LK-LGFKPIVVVNK-IDRSNARPEWVVDATFD 351 (793)
Q Consensus 281 PGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~----~~---~~-~~ip~IvvINK-iD~~~a~~~~v~~~i~~ 351 (793)
.|+..+...+..++..+|++|+|||+++..-...+.-+. .+ .. .+.|.+|+.|| -|.+++-. ..++.+
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams---~~EI~e 271 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP---CFYLAH 271 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC---HHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCC---HHHHHH
Confidence 367778888999999999999999998753322333222 22 11 57899999997 58876532 223333
Q ss_pred HHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHhhcCc
Q psy1760 352 LFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401 (793)
Q Consensus 352 ~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~ 401 (793)
.+. +..- ...+-|..+||.+|. |+.+-+++|.+.+..
T Consensus 272 ~L~-L~~l--~r~W~Iq~csA~tGe----------GL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 272 ELH-LNLL--NHPWLVQDTEAETLT----------GFLNGIEWILEEVES 308 (312)
T ss_dssp HTT-GGGG--CSCEEEEEEETTTCT----------THHHHHHHHHHHSCC
T ss_pred HcC-CccC--CCcEEEEecccCCCc----------CHHHHHHHHHHHHHh
Confidence 332 1111 135669999999998 999999999887743
No 242
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.09 E-value=0.00073 Score=76.45 Aligned_cols=164 Identities=20% Similarity=0.253 Sum_probs=79.5
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccch---------hhccccceEEeeeeeE-------------Ee
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSN---------EIEKERGITIFSKNCS-------------IE 269 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~---------~~e~erGiTi~~~~~~-------------~~ 269 (793)
.++|+|..|+|||||+..|.+.... ..+.+.-.-.|.. .....+++.+...... ..
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAK 372 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHH
Confidence 5789999999999999998754211 1111100000100 0001123322211110 00
Q ss_pred ecCeEEEEecCCCcccch----HHHH---HHhh-----ccCcEEEEEeCCCCCCchhHHHHHHHH-HcCCccEEEEeccc
Q psy1760 270 YNGTRINIIDTPGHADFG----GEVE---RILS-----MVDNVLLLIDAVEGPMPQTRFVTRKAL-KLGFKPIVVVNKID 336 (793)
Q Consensus 270 ~~~~~i~iiDTPGh~df~----~ev~---~~l~-----~aD~allVVDa~~g~~~qt~~~l~~~~-~~~ip~IvvINKiD 336 (793)
..++.+.||||+|..... .++. +.++ ..+-++||+|+..|.. ....++... ..++ ..+++||+|
T Consensus 373 ~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~--al~~ak~f~~~~~i-tgvIlTKLD 449 (503)
T 2yhs_A 373 ARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN--AVSQAKLFHEAVGL-TGITLTKLD 449 (503)
T ss_dssp HTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH--HHHHHHHHHHHTCC-SEEEEECGG
T ss_pred hcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH--HHHHHHHHHhhcCC-CEEEEEcCC
Confidence 135678999999974322 2222 2222 2457899999987621 112222222 2333 368999999
Q ss_pred CCCCChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHH
Q psy1760 337 RSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAIL 396 (793)
Q Consensus 337 ~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~ 396 (793)
.. ++...++.-+.. ...||.|++.-.+ +.++. ..+.+.+.+.|.
T Consensus 450 ~t-akgG~~lsi~~~-----------~~~PI~fig~Ge~--vdDL~--~f~~~~~v~~ll 493 (503)
T 2yhs_A 450 GT-AKGGVIFSVADQ-----------FGIPIRYIGVGER--IEDLR--PFKADDFIEALF 493 (503)
T ss_dssp GC-SCCTHHHHHHHH-----------HCCCEEEEECSSS--GGGEE--ECCHHHHHHHHH
T ss_pred Cc-ccccHHHHHHHH-----------HCCCEEEEecCCC--hhhcc--cCCHHHHHHHHh
Confidence 63 333333322211 2468888654333 32221 223445555554
No 243
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.07 E-value=0.0007 Score=67.03 Aligned_cols=64 Identities=9% Similarity=0.034 Sum_probs=51.1
Q ss_pred CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcC-----CccEEEEecccCC
Q psy1760 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG-----FKPIVVVNKIDRS 338 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~-----ip~IvvINKiD~~ 338 (793)
.+.+.|||||+.. ......++..+|.+|+++.+.... ..+...++.+...+ +++.+|+||+|..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 5789999999976 456677889999999999988766 67777777776553 5668999999964
No 244
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.00 E-value=0.00059 Score=72.96 Aligned_cols=85 Identities=15% Similarity=0.218 Sum_probs=58.9
Q ss_pred HhhccCcEEEEEeCCCCCCchh--HHHHHHHHHcCCccEEEEecccCCCCChh-hhHhHHHHHHhhhcccccccCccEEE
Q psy1760 293 ILSMVDNVLLLIDAVEGPMPQT--RFVTRKALKLGFKPIVVVNKIDRSNARPE-WVVDATFDLFDKLCATEEQLDFPVIY 369 (793)
Q Consensus 293 ~l~~aD~allVVDa~~g~~~qt--~~~l~~~~~~~ip~IvvINKiD~~~a~~~-~v~~~i~~~~~~l~~~~~~l~~Pvi~ 369 (793)
.+..+|.+++|+|+.++..... ...+..+...++|+++|+||+|+.+.... +.++++.+.+..+ .+++++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~-------g~~v~~ 155 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI-------GYDVYL 155 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH-------TCCEEE
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC-------CCeEEE
Confidence 5788999999999997655543 22344445689999999999999753210 2245555555433 357999
Q ss_pred eecCCCCcccccccccCCchhhHHH
Q psy1760 370 TSALHGYANENSKARQGNMIPLFEA 394 (793)
Q Consensus 370 ~SA~~g~~~~~~~~~~~gi~~Ll~~ 394 (793)
+||.+|. |++.|++.
T Consensus 156 ~sa~~~~----------g~~~L~~~ 170 (307)
T 1t9h_A 156 TSSKDQD----------SLADIIPH 170 (307)
T ss_dssp CCHHHHT----------TCTTTGGG
T ss_pred EecCCCC----------CHHHHHhh
Confidence 9999987 66666543
No 245
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.99 E-value=0.0011 Score=77.54 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=38.8
Q ss_pred eEEEEecCCCcccc---------hHHHHHH----hhcc-CcEEEEEeCCCCCCch-hHHHHHHHHHcCCccEEEEecccC
Q psy1760 273 TRINIIDTPGHADF---------GGEVERI----LSMV-DNVLLLIDAVEGPMPQ-TRFVTRKALKLGFKPIVVVNKIDR 337 (793)
Q Consensus 273 ~~i~iiDTPGh~df---------~~ev~~~----l~~a-D~allVVDa~~g~~~q-t~~~l~~~~~~~ip~IvvINKiD~ 337 (793)
-.+.|+|.||.... ...+... +... ..+++++++......+ ...+++.+...|.+.|+|+||.|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 46999999985431 1222222 3332 5566666665443322 233444444557899999999998
Q ss_pred CCC
Q psy1760 338 SNA 340 (793)
Q Consensus 338 ~~a 340 (793)
...
T Consensus 227 v~~ 229 (608)
T 3szr_A 227 VDK 229 (608)
T ss_dssp SSS
T ss_pred cCc
Confidence 754
No 246
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.92 E-value=0.001 Score=71.51 Aligned_cols=106 Identities=17% Similarity=0.176 Sum_probs=58.4
Q ss_pred cCeEEEEecCCCcccchHHHHH-------Hh-----hccCcEEEEEeCCCCCCchhHHHHHHHHHcC--Ccc-EEEEecc
Q psy1760 271 NGTRINIIDTPGHADFGGEVER-------IL-----SMVDNVLLLIDAVEGPMPQTRFVTRKALKLG--FKP-IVVVNKI 335 (793)
Q Consensus 271 ~~~~i~iiDTPGh~df~~ev~~-------~l-----~~aD~allVVDa~~g~~~qt~~~l~~~~~~~--ip~-IvvINKi 335 (793)
.++.+.||||||.......... .+ ..+|.+++|+|+..+ . ..+..+..+. .++ =+|+||+
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~---~~l~~~~~~~~~~~i~GvVltk~ 264 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--Q---NGVIQAEEFSKVADVSGIILTKM 264 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--H---HHHHHHHHHTTTSCCCEEEEECG
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--H---HHHHHHHHHhhcCCCcEEEEeCC
Confidence 4678999999997554322211 12 237899999999854 2 2233333332 333 4789999
Q ss_pred cCCCCChhhhHhHHHHHHhhhcccccccCccEEEeecCCCCcccccccccCCchhhHHHHHh
Q psy1760 336 DRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK 397 (793)
Q Consensus 336 D~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~I~~ 397 (793)
|... +...+++-.. . ...|+.+++.-.+ ..++ ...+.+.+.+.|..
T Consensus 265 d~~~-~~g~~~~~~~----~-------~~~Pi~~i~~Ge~--~~dl--~~~~~~~~~~~ll~ 310 (320)
T 1zu4_A 265 DSTS-KGGIGLAIKE----L-------LNIPIKMIGVGEK--VDDL--LAFDIDQYIVHLSS 310 (320)
T ss_dssp GGCS-CTTHHHHHHH----H-------HCCCEEEEECSSS--TTCE--EECCHHHHHHHHTG
T ss_pred CCCC-chhHHHHHHH----H-------HCcCEEEEeCCCC--cccc--ccCCHHHHHHHHhC
Confidence 9743 2222222111 1 2468888764333 3322 23355666666654
No 247
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.85 E-value=0.001 Score=71.17 Aligned_cols=89 Identities=19% Similarity=0.305 Sum_probs=48.9
Q ss_pred cCeEEEEecCCCcccchHHHH-------HHh-----hccCcEEEEEeCCCCCCchhHHHHHHHHHcCCcc-EEEEecccC
Q psy1760 271 NGTRINIIDTPGHADFGGEVE-------RIL-----SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDR 337 (793)
Q Consensus 271 ~~~~i~iiDTPGh~df~~ev~-------~~l-----~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~-IvvINKiD~ 337 (793)
.++.+.|+||||.......+. +.+ ..+|.+++|+|+..+ .......+...+ ..++ -+++||+|.
T Consensus 185 ~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~-~~~i~gvVlTk~D~ 261 (306)
T 1vma_A 185 RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKE-AVNVTGIILTKLDG 261 (306)
T ss_dssp TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHH-HSCCCEEEEECGGG
T ss_pred cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHh-cCCCCEEEEeCCCC
Confidence 466799999999644333221 122 236889999999743 111122222222 1333 578899997
Q ss_pred CCCChhhhHhHHHHHHhhhcccccccCccEEEeecCC
Q psy1760 338 SNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALH 374 (793)
Q Consensus 338 ~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~ 374 (793)
. ++...+++-... ...|+.|++.-.
T Consensus 262 ~-~~gG~~l~~~~~-----------~~~Pi~~i~~Ge 286 (306)
T 1vma_A 262 T-AKGGITLAIARE-----------LGIPIKFIGVGE 286 (306)
T ss_dssp C-SCTTHHHHHHHH-----------HCCCEEEEECSS
T ss_pred c-cchHHHHHHHHH-----------HCCCEEEEeCCC
Confidence 4 333333332221 246888886543
No 248
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=96.82 E-value=0.00054 Score=70.10 Aligned_cols=70 Identities=20% Similarity=0.286 Sum_probs=56.3
Q ss_pred ceEEEeeCCCCCChH-------HHHHHHHHHhc-cccccCCCCCCCCCcceeeeeeccccc--ccchhcc--CCceEEEE
Q psy1760 10 SVVIPKYKPYGLSSN-------NALKKIKYLLN-AKKVGYTGTLDPFATGLLPLCFGEATK--FSNYLSE--ADKYYEAI 77 (793)
Q Consensus 10 ~g~~~~~Kp~g~ts~-------~~v~~~~~~~~-~~k~gh~gtLDp~a~G~l~~~~g~~tk--~~~~~~~--~~K~Y~~~ 77 (793)
..+|+||||+|+.+| .++..+++.++ ..+.+..|.||-..||||+++-...+. +...+.+ ..|+|.|.
T Consensus 9 ~~~lvvnKP~G~~~~~~~~~~~~l~~~l~~~~~~~~~~~~VhRLD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~Y~a~ 88 (228)
T 1v9k_A 9 DHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 88 (228)
T ss_dssp SSEEEEEECTTSCSSCCSSSBCCHHHHHHHHSTTCSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCEEEEECCCCCeEecCCChHHHHHHHHHHHcCCCCccceEecCCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEEEEEE
Confidence 468999999999988 48888887765 347889999999999999999887643 5555543 57999998
Q ss_pred EE
Q psy1760 78 IH 79 (793)
Q Consensus 78 ~~ 79 (793)
+.
T Consensus 89 v~ 90 (228)
T 1v9k_A 89 VR 90 (228)
T ss_dssp EE
T ss_pred Ee
Confidence 86
No 249
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.76 E-value=0.0022 Score=68.41 Aligned_cols=86 Identities=24% Similarity=0.367 Sum_probs=48.1
Q ss_pred CeEEEEecCCCcccchH----HHH---HHh-----hccCcEEEEEeCCCCCCchhHHHHHHHH-HcCCccEEEEecccCC
Q psy1760 272 GTRINIIDTPGHADFGG----EVE---RIL-----SMVDNVLLLIDAVEGPMPQTRFVTRKAL-KLGFKPIVVVNKIDRS 338 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~----ev~---~~l-----~~aD~allVVDa~~g~~~qt~~~l~~~~-~~~ip~IvvINKiD~~ 338 (793)
+..+.++||+|...... +.. .++ ...+.+++++|+..+.. ....++... ..++ .++++||.|..
T Consensus 184 ~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~-t~iivTh~d~~ 260 (304)
T 1rj9_A 184 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGL-TGVIVTKLDGT 260 (304)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCC-SEEEEECTTSS
T ss_pred CCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCC-cEEEEECCccc
Confidence 45678999999654322 221 111 23577899999887632 222333332 3344 58899999975
Q ss_pred CCChhhhHhHHHHHHhhhcccccccCccEEEeec
Q psy1760 339 NARPEWVVDATFDLFDKLCATEEQLDFPVIYTSA 372 (793)
Q Consensus 339 ~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA 372 (793)
++...++.-... ...|+.|++-
T Consensus 261 -a~gg~~l~i~~~-----------~~~pi~~ig~ 282 (304)
T 1rj9_A 261 -AKGGVLIPIVRT-----------LKVPIKFVGV 282 (304)
T ss_dssp -CCCTTHHHHHHH-----------HCCCEEEEEC
T ss_pred -ccccHHHHHHHH-----------HCCCeEEEeC
Confidence 333333322211 2468888873
No 250
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.74 E-value=0.0017 Score=72.39 Aligned_cols=125 Identities=20% Similarity=0.254 Sum_probs=64.2
Q ss_pred cceeeeecccCCcceehhhhhhccCcccccccc-ccccccch------hhccccceEEeeeee-------------EEee
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNI-NARIMDSN------EIEKERGITIFSKNC-------------SIEY 270 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v-~~~~~D~~------~~e~erGiTi~~~~~-------------~~~~ 270 (793)
..++++|+.|+||||++..|............+ ........ ......|+.+..... .+..
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~ 178 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999887542111100000 00000000 001112332222110 0112
Q ss_pred cCeEEEEecCCCcccch----HHHHHH--hhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCc-cEEEEecccCC
Q psy1760 271 NGTRINIIDTPGHADFG----GEVERI--LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRS 338 (793)
Q Consensus 271 ~~~~i~iiDTPGh~df~----~ev~~~--l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip-~IvvINKiD~~ 338 (793)
.++.+.||||||..... .++... +..+|.+++|+|+..+ .......+.... .++ .-||+||+|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~-~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHH-HTCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHh-cCCceEEEEeCcCCc
Confidence 56789999999965432 222222 2358999999999765 122222222221 244 46799999974
No 251
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.66 E-value=0.001 Score=70.74 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=38.7
Q ss_pred cCeEEEEecCCCcccchHH----HHHHhh--ccCcEEEEEeCCCCCCchhHHHHHHHHHcC-Cc-cEEEEecccCCC
Q psy1760 271 NGTRINIIDTPGHADFGGE----VERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLG-FK-PIVVVNKIDRSN 339 (793)
Q Consensus 271 ~~~~i~iiDTPGh~df~~e----v~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~-ip-~IvvINKiD~~~ 339 (793)
.+..+.|+||||....... +...+. ..|.+++|+|++.+. ..+.+.+..+. ++ .-+++||+|...
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~----~~~~~~~~~~~~l~~~giVltk~D~~~ 253 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY----EDMKHIVKRFSSVPVNQYIFTKIDETT 253 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH----HHHHHHTTTTSSSCCCEEEEECTTTCS
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH----HHHHHHHHHHhcCCCCEEEEeCCCccc
Confidence 5678999999997654332 223332 257789999988642 12222233222 22 246779999753
No 252
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=96.62 E-value=0.0024 Score=55.92 Aligned_cols=79 Identities=19% Similarity=0.191 Sum_probs=66.3
Q ss_pred EEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCC-CceeEeEEEEeecCceEEecccCCCcEEEEe--cccee
Q psy1760 412 LQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKP-NKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GIEEI 488 (793)
Q Consensus 412 ~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~-~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--gl~~i 488 (793)
+.|-+++..+..|.||-.+|.+|.++.+..+.+.+. |.. ...++.+|..|. .+++++.+|.=|+|. +..|+
T Consensus 9 AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd--~~vI~eG~i~SLkr~K----ddV~EV~~G~ECGi~l~~~~di 82 (99)
T 1d1n_A 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQ--GIVVYEGEIDSLKRYK----DDVREVAQGYECGLTIKNFNDI 82 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECS--SSEEEEEECSEEECSS----SCCSCCBTTCEEEEECTTCSSC
T ss_pred EEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEEC--CEEEEEeEEhhhcccc----cccceECCCcEEEEEEcCcCCC
Confidence 456677777889999999999999999999999986 432 256888998776 789999999999985 77899
Q ss_pred ecCCeEeC
Q psy1760 489 CIGSTICD 496 (793)
Q Consensus 489 ~iGdtl~~ 496 (793)
+.||+|-.
T Consensus 83 k~GD~Ie~ 90 (99)
T 1d1n_A 83 KEGDVIEA 90 (99)
T ss_dssp SSCSEEEE
T ss_pred CCCCEEEE
Confidence 99999843
No 253
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=96.49 E-value=0.0011 Score=70.25 Aligned_cols=140 Identities=24% Similarity=0.239 Sum_probs=89.6
Q ss_pred cceEEEeeCCCCCChH-------HHHHHHHHHhccccccCCCCCCCCCcceeeeeecc--cccccchhccCCceEEEEEE
Q psy1760 9 VSVVIPKYKPYGLSSN-------NALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGE--ATKFSNYLSEADKYYEAIIH 79 (793)
Q Consensus 9 ~~g~~~~~Kp~g~ts~-------~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~--~tk~~~~~~~~~K~Y~~~~~ 79 (793)
..-+|+||||.|+.|| .+++.++. ..++.+.|.||-..||||+++-.. +.++..--....|+|.|.+.
T Consensus 66 d~~~lvvnKP~G~~~~~~~~~~~tl~~~l~~---~~~~~~VhRLD~dTSGLllla~d~~~~~~L~~~~~~v~K~Y~a~V~ 142 (290)
T 3dh3_A 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVD 142 (290)
T ss_dssp GCCEEEEEECTTCBCCCCSSCTTBHHHHHTC---SSCCEESSCCCTTCEEEEEEESCTTHHHHHHCGGGCCCEEEEEEES
T ss_pred cceEEEEECCCccccCCCCCCCCcHHHHhhc---cCceeeeccCCCCCcceEEEcCCHHHHHHHHHhhCCcCEEEEEEEC
Confidence 3468999999999887 46666653 457899999999999999999875 34454444457899999773
Q ss_pred EceeeccCCCcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEE
Q psy1760 80 LGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITI 159 (793)
Q Consensus 80 ~g~~t~t~d~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~ 159 (793)
| +++++.++. |.- .+.++|.. ..+..+. .
T Consensus 143 -----------G---------~~~~~~i~~----l~~----------Gv~l~~~~------------~~~~~v~-----~ 171 (290)
T 3dh3_A 143 -----------K---------PITEEFIRG----MSA----------GVPILGTV------------TKKCKVK-----K 171 (290)
T ss_dssp -----------S---------CCCHHHHHH----HHT----------CCBCSSSB------------CCCCEEE-----E
T ss_pred -----------C---------CCCHHHHHH----Hhc----------CcccCCcc------------cceEEEE-----E
Confidence 2 234454432 211 11122221 0111111 1
Q ss_pred EeecCCceeeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhcccccccc
Q psy1760 160 IDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLD 210 (793)
Q Consensus 160 ~d~~~~~~~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le 210 (793)
.+...+.+.+..++--.||..+..+|.. +..|+|+++|++.++
T Consensus 172 --~~~~~l~l~l~tGR~HQIR~~~~~lG~p------V~~L~R~~iG~l~L~ 214 (290)
T 3dh3_A 172 --EAPFVFRITLVQGLNRQIRRMCEHFGYE------VKKLERTRIMNVSLS 214 (290)
T ss_dssp --CSSSEEEEEESCCCTTHHHHHHHHTTCC------EEEEEEEEETTEECT
T ss_pred --cCCeEEEEEEeCCCChHHHHHHHHcCCe------EEEeEEEEECCEecC
Confidence 1223456667777778999998888743 445788888888654
No 254
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.24 E-value=0.0048 Score=65.49 Aligned_cols=89 Identities=24% Similarity=0.361 Sum_probs=47.8
Q ss_pred cCeEEEEecCCCcccch----HHHHHH--hhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCc-cEEEEecccCCCCChh
Q psy1760 271 NGTRINIIDTPGHADFG----GEVERI--LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNARPE 343 (793)
Q Consensus 271 ~~~~i~iiDTPGh~df~----~ev~~~--l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip-~IvvINKiD~~~a~~~ 343 (793)
.++.+.|+||||..... .++... ...+|.+++|+|+..+ .......+.... .++ .-+|+||+|... +..
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~~-~~g 254 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGDA-RGG 254 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGCS-SCH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCCc-cHH
Confidence 46789999999864332 222221 1247899999998753 222222222221 244 357899999753 333
Q ss_pred hhHhHHHHHHhhhcccccccCccEEEeecCC
Q psy1760 344 WVVDATFDLFDKLCATEEQLDFPVIYTSALH 374 (793)
Q Consensus 344 ~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~~ 374 (793)
.+++-.. ....|+.+++.-.
T Consensus 255 ~~~~~~~-----------~~~~pi~~i~~g~ 274 (295)
T 1ls1_A 255 AALSARH-----------VTGKPIYFAGVSE 274 (295)
T ss_dssp HHHHHHH-----------HHCCCEEEEC---
T ss_pred HHHHHHH-----------HHCcCEEEEeCCC
Confidence 3322211 1256888877433
No 255
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.14 E-value=0.0085 Score=65.26 Aligned_cols=111 Identities=23% Similarity=0.312 Sum_probs=64.7
Q ss_pred HhhccCcEEEEEeCCCCCCchhHH---HHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEE
Q psy1760 293 ILSMVDNVLLLIDAVEGPMPQTRF---VTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIY 369 (793)
Q Consensus 293 ~l~~aD~allVVDa~~g~~~qt~~---~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~ 369 (793)
.+..+|.+++| ||.. +...... .+..+...++|+++|+||+|+.+....+..+++...|.. ..+|+++
T Consensus 127 i~anvD~v~iv-~a~~-P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~-------~G~~v~~ 197 (358)
T 2rcn_A 127 IAANIDQIVIV-SAIL-PELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRN-------IGYRVLM 197 (358)
T ss_dssp EEECCCEEEEE-EEST-TTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHT-------TTCCEEE
T ss_pred HHhcCCEEEEE-EeCC-CCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHh-------CCCcEEE
Confidence 36778999866 5555 3333333 333445679999999999999753111112333333322 3567999
Q ss_pred eecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccc
Q psy1760 370 TSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIK 437 (793)
Q Consensus 370 ~SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk 437 (793)
+||.+|. |++.|...+. +. +.-+.-.++.|+-++.+...|.+.
T Consensus 198 ~Sa~~~~----------gl~~L~~~~~-----------G~----~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 198 VSSHTQD----------GLKPLEEALT-----------GR----ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp CBTTTTB----------THHHHHHHHT-----------TS----EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EecCCCc----------CHHHHHHhcC-----------CC----EEEEECCCCccHHHHHHHHhcccc
Confidence 9999998 6666665431 11 222334455666555555555443
No 256
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.97 E-value=0.0082 Score=54.38 Aligned_cols=80 Identities=11% Similarity=0.099 Sum_probs=65.3
Q ss_pred eEEEEEEeeeCCCce---EEEEEEeecccccCCEEEEecCCCCC-CCceeEeEEEEeecCceEEecccCCCcEEEEe--c
Q psy1760 411 QLQIISLEYSSYLGK---IGIGRILSGRIKSLQDVVIMNGPDDK-PNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--G 484 (793)
Q Consensus 411 ~~~V~~~~~~~~~G~---v~~grV~sG~lk~G~~v~~~~~~~g~-~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~--g 484 (793)
.+.|-+++..+..|+ ||-.+|.+|.|+.+..+.+.+. |. ....++.+|..|. .+|+++.+|.=|+|. +
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRd--g~vI~eG~i~SLkrfK----dDVkEV~~G~ECGi~l~~ 85 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRN--GQVIWKGSLTSLKHHK----DDISVIKTGMDCGLSLDE 85 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEET--TEEEEEECCSEEESSS----SCCSEECTTCEEEEECSC
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEEC--CEEEEEeEehhhcccc----cccceecCCCEEEEEEcc
Confidence 455667777777788 9999999999999999999986 42 2245788888765 789999999999985 7
Q ss_pred cc-eeecCCeEeC
Q psy1760 485 IE-EICIGSTICD 496 (793)
Q Consensus 485 l~-~i~iGdtl~~ 496 (793)
.. |++.||+|-.
T Consensus 86 fniDik~GDiIE~ 98 (120)
T 2crv_A 86 EKVEFKPGDQVIC 98 (120)
T ss_dssp TTSCCCTTEEEEE
T ss_pred CCCCCCCCCEEEE
Confidence 78 9999999944
No 257
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.94 E-value=0.014 Score=62.22 Aligned_cols=144 Identities=21% Similarity=0.263 Sum_probs=73.5
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccch---------hhccccceEEeeeeeE-E-------------
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSN---------EIEKERGITIFSKNCS-I------------- 268 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~---------~~e~erGiTi~~~~~~-~------------- 268 (793)
.++++|+.|+|||||+..|.+.... ..+.+.-.-.|.. ......++.+...... .
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~ 179 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 179 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHH
Confidence 5799999999999999999764211 1111110000100 0001123332221111 0
Q ss_pred eecCeEEEEecCCCcccchHHHHH-------Hh-----hccCcEEEEEeCCCCCCchhHHHHHHHH-HcCCccEEEEecc
Q psy1760 269 EYNGTRINIIDTPGHADFGGEVER-------IL-----SMVDNVLLLIDAVEGPMPQTRFVTRKAL-KLGFKPIVVVNKI 335 (793)
Q Consensus 269 ~~~~~~i~iiDTPGh~df~~ev~~-------~l-----~~aD~allVVDa~~g~~~qt~~~l~~~~-~~~ip~IvvINKi 335 (793)
...+....++||.|...+...... ++ ...+-++||+|++.|..+... ++... ..++ .+++++|+
T Consensus 180 ~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~~~~g~-t~iiiThl 256 (302)
T 3b9q_A 180 KEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGLILTKL 256 (302)
T ss_dssp HHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEEEEECC
T ss_pred HHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHHHhcCC-CEEEEeCC
Confidence 012345679999997654322111 11 235667999998877655433 23332 3444 47889999
Q ss_pred cCCCCChhhhHhHHHHHHhhhcccccccCccEEEeec
Q psy1760 336 DRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSA 372 (793)
Q Consensus 336 D~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA 372 (793)
|.. ++....++-.... ..|+.++..
T Consensus 257 D~~-~~~g~~l~~~~~~-----------~~pi~~i~~ 281 (302)
T 3b9q_A 257 DGS-ARGGCVVSVVEEL-----------GIPVKFIGV 281 (302)
T ss_dssp SSC-SCTHHHHHHHHHH-----------CCCEEEEEC
T ss_pred CCC-CccChheehHHHH-----------CCCEEEEeC
Confidence 864 3444444333221 357777653
No 258
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=95.78 E-value=0.012 Score=66.00 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.7
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.-|+|+|.+++|||||+|+|++.
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhhh
Confidence 35799999999999999999975
No 259
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=95.64 E-value=0.002 Score=66.43 Aligned_cols=67 Identities=24% Similarity=0.273 Sum_probs=48.9
Q ss_pred EEEeeCCCCCChHH-------HHHHHHHHhccccccCCCCCCCCCcceeeeeecc--cccccchhccCCceEEEEEE
Q psy1760 12 VIPKYKPYGLSSNN-------ALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGE--ATKFSNYLSEADKYYEAIIH 79 (793)
Q Consensus 12 ~~~~~Kp~g~ts~~-------~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~--~tk~~~~~~~~~K~Y~~~~~ 79 (793)
+++||||+|+.+|. +++.++..+. .+.+..|-||-..||||+++-.. +.++..--....|+|.|.+.
T Consensus 64 ~lvvnKP~G~~~~~~~~~~~tl~~~l~~~~~-~~~~~vhRLD~~TsGlll~ak~~~~a~~l~~~~~~v~K~Y~a~v~ 139 (243)
T 1vio_A 64 YFMLNKPQGCVCSNDDGDYPTIYQFFDYPLA-GKLHSAGRLDVDTTGLVLLTDDGQWSHRITSPKHHCEKTYLVTLA 139 (243)
T ss_dssp EEEEEECTTCBSSCCC--CCBGGGGSCTTGG-GGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEES
T ss_pred EEEEECCCCCEeCCCCCCCCcHHHHHhHHhc-CCEeEccCCCCCCeEEEEEEECHHHHHHHhCCCCCCCEEEEEEEe
Confidence 89999999998872 3444433332 36888999999999999999875 34444322346899999875
No 260
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=95.45 E-value=0.0023 Score=65.58 Aligned_cols=70 Identities=19% Similarity=0.144 Sum_probs=50.5
Q ss_pred cceEEEeeCCCCCChHH-------HHHHHHHHhccccccCCCCCCCCCcceeeeeecc-c-ccccchhccCCceEEEEEE
Q psy1760 9 VSVVIPKYKPYGLSSNN-------ALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGE-A-TKFSNYLSEADKYYEAIIH 79 (793)
Q Consensus 9 ~~g~~~~~Kp~g~ts~~-------~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~-~-tk~~~~~~~~~K~Y~~~~~ 79 (793)
...+++||||+|+.+|. +++.++..++ .+.+..|-||-..||||+++-.. + .++..--....|+|.|.+.
T Consensus 62 d~~~lvvnKP~G~~~~~~~~~~~tl~~~l~~~~~-~~~~~vhRLD~~TsGlll~ak~~~~~~~l~~~~~~v~K~Y~a~v~ 140 (234)
T 1ksk_A 62 GPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVA-WKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLE 140 (234)
T ss_dssp CCCEEEEEECTTCBSSSSCSSSCBGGGGCCCTTG-GGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEES
T ss_pred CCEEEEEECCCCCEeCCCCCCCCcHHHHhhhhhc-CCeeEcCCCCCCCeeEEEEEcCHHHHHHHhCCCCCCCeEEEEEEc
Confidence 35689999999998874 3444433322 36889999999999999999885 3 3444322346899999874
No 261
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.44 E-value=0.026 Score=61.54 Aligned_cols=145 Identities=21% Similarity=0.260 Sum_probs=73.8
Q ss_pred ceeeeecccCCcceehhhhhhccCccccccccccccccch---------hhccccceEEeeeeeE-----------E---
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSN---------EIEKERGITIFSKNCS-----------I--- 268 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~---------~~e~erGiTi~~~~~~-----------~--- 268 (793)
.++++|+.|+|||||+..|.+.... ..+.+.-.-.|.. ......++.+...... +
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~ 236 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 236 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHH
Confidence 5799999999999999998764211 1111110000100 0001123322211110 0
Q ss_pred eecCeEEEEecCCCcccchHHHHH-------Hh-----hccCcEEEEEeCCCCCCchhHHHHHHHH-HcCCccEEEEecc
Q psy1760 269 EYNGTRINIIDTPGHADFGGEVER-------IL-----SMVDNVLLLIDAVEGPMPQTRFVTRKAL-KLGFKPIVVVNKI 335 (793)
Q Consensus 269 ~~~~~~i~iiDTPGh~df~~ev~~-------~l-----~~aD~allVVDa~~g~~~qt~~~l~~~~-~~~ip~IvvINKi 335 (793)
...+....++||.|.......... ++ ...+-++||+|++.|..+... .+... ..++ .+++++|+
T Consensus 237 ~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~--~~~~~~~~g~-t~iiiThl 313 (359)
T 2og2_A 237 KEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGLILTKL 313 (359)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEEEEESC
T ss_pred HhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH--HHHHHHhcCC-eEEEEecC
Confidence 012345679999997654322111 11 235667999998877654433 22222 3343 47889999
Q ss_pred cCCCCChhhhHhHHHHHHhhhcccccccCccEEEeecC
Q psy1760 336 DRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSAL 373 (793)
Q Consensus 336 D~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~SA~ 373 (793)
|.. ++....++-.... ..|+.+++.-
T Consensus 314 D~~-~~gG~~lsi~~~~-----------~~pI~~ig~G 339 (359)
T 2og2_A 314 DGS-ARGGCVVSVVEEL-----------GIPVKFIGVG 339 (359)
T ss_dssp TTC-SCTHHHHHHHHHH-----------CCCEEEEECS
T ss_pred ccc-ccccHHHHHHHHh-----------CCCEEEEeCC
Confidence 864 3444444332221 4578877643
No 262
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=95.11 E-value=0.0095 Score=60.27 Aligned_cols=69 Identities=20% Similarity=0.270 Sum_probs=52.6
Q ss_pred cceEEEeeCCCCCChHH---------HHHHHHHHhccccccCCCCCCCCCcceeeeeecccc--cccchhcc--CCceEE
Q psy1760 9 VSVVIPKYKPYGLSSNN---------ALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEAT--KFSNYLSE--ADKYYE 75 (793)
Q Consensus 9 ~~g~~~~~Kp~g~ts~~---------~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~t--k~~~~~~~--~~K~Y~ 75 (793)
...+|+||||+|+.+|. +++.++..+ .+.+..|-||-..||||+++-.... ++...+.+ ..|+|.
T Consensus 18 d~~~lvvnKP~G~~~~~~~~~~~~~tl~~~l~~~~--~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~f~~~~v~K~Y~ 95 (217)
T 2i82_A 18 DDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY--PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYV 95 (217)
T ss_dssp CSSEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHC--TTCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCCEEEEECCCCCeEeCCCCCCchhHHHHHHHHHC--CCCceeecCCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEEEE
Confidence 35689999999997662 666776655 3678899999999999999987653 34444443 579999
Q ss_pred EEEE
Q psy1760 76 AIIH 79 (793)
Q Consensus 76 ~~~~ 79 (793)
|.+.
T Consensus 96 a~v~ 99 (217)
T 2i82_A 96 ARVW 99 (217)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9876
No 263
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=94.87 E-value=0.0052 Score=60.82 Aligned_cols=71 Identities=24% Similarity=0.248 Sum_probs=48.4
Q ss_pred cceEEEeeCCCCCChHHHHH----HHHHHhccccccCCCCCCCCCcceeeeeecccc--cccchhccCCceEEEEEE
Q psy1760 9 VSVVIPKYKPYGLSSNNALK----KIKYLLNAKKVGYTGTLDPFATGLLPLCFGEAT--KFSNYLSEADKYYEAIIH 79 (793)
Q Consensus 9 ~~g~~~~~Kp~g~ts~~~v~----~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~t--k~~~~~~~~~K~Y~~~~~ 79 (793)
...+|+||||+|+.+|.--. .+-..+...+....|-||-..||||+++-.... ++...-....|+|.|.+.
T Consensus 10 d~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~v~K~Y~a~v~ 86 (189)
T 2oml_A 10 PTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVE 86 (189)
T ss_dssp CCCEEEEEECTTBCSCSSCCTTCBCGGGTCCCSSCEESSCCCTTCEEEEEEESCHHHHHHHHSTTSCCCEEEEEEEE
T ss_pred CCeEEEEECCCCCEecCCCCCCCCCHHHHcCCCCceECCCCCCCCeeEEEEEcCHHHHHHHhCccCCCcEEEEEEEc
Confidence 35689999999998763211 011122234688899999999999999986542 233333346899999875
No 264
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli}
Probab=94.65 E-value=0.0065 Score=61.55 Aligned_cols=71 Identities=24% Similarity=0.248 Sum_probs=48.9
Q ss_pred cceEEEeeCCCCCChHHHHH----HHHHHhccccccCCCCCCCCCcceeeeeecccc--cccchhccCCceEEEEEE
Q psy1760 9 VSVVIPKYKPYGLSSNNALK----KIKYLLNAKKVGYTGTLDPFATGLLPLCFGEAT--KFSNYLSEADKYYEAIIH 79 (793)
Q Consensus 9 ~~g~~~~~Kp~g~ts~~~v~----~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~t--k~~~~~~~~~K~Y~~~~~ 79 (793)
...+|+||||+|+.+|.--. .+-..+...+....|-||-..||||++|-.... ++........|+|.|.+.
T Consensus 38 d~~~lvvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~VhRLDr~TSGllllAk~~~~~~~L~~~~~~v~K~Y~A~V~ 114 (217)
T 2olw_A 38 PTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVE 114 (217)
T ss_dssp CCCEEEEEECTTBCSCSSCCTTSBCGGGTCCCCSCEESSCCCTTCEEEEEEESCHHHHHHHHCTTCCCCEEEEEEEE
T ss_pred CCcEEEEECCCCCEeccCCCCCCccHHHHhCcCCceECCCCCCCCeeEEEEEcCHHHHHHHHcccccCCEEEEEEEc
Confidence 35689999999998874111 111222234688899999999999999986542 233333446899999886
No 265
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=94.63 E-value=0.019 Score=61.76 Aligned_cols=70 Identities=21% Similarity=0.280 Sum_probs=52.1
Q ss_pred ceEEEeeCCCCCChH--------HHHHHHHHHh----ccccccCCCCCCCCCcceeeeeecccc--cccchhcc--CCce
Q psy1760 10 SVVIPKYKPYGLSSN--------NALKKIKYLL----NAKKVGYTGTLDPFATGLLPLCFGEAT--KFSNYLSE--ADKY 73 (793)
Q Consensus 10 ~g~~~~~Kp~g~ts~--------~~v~~~~~~~----~~~k~gh~gtLDp~a~G~l~~~~g~~t--k~~~~~~~--~~K~ 73 (793)
..+|+||||+|+.+| .+++.+...+ +..+.+..|-||-..||||+++-.... ++...+.. ..|+
T Consensus 90 ~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~ 169 (325)
T 1v9f_A 90 EDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITRE 169 (325)
T ss_dssp SSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBCCCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEE
T ss_pred CCEEEEECCCCCeEecCCCCCCccHHHHHHHHHHhcCCCCceeeecCCCCCCeeEEEEEcCHHHHHHHHHHHHcCCeeEE
Confidence 568999999999765 3666665443 234789999999999999999987652 24443433 5799
Q ss_pred EEEEEE
Q psy1760 74 YEAIIH 79 (793)
Q Consensus 74 Y~~~~~ 79 (793)
|.|.+.
T Consensus 170 Y~a~v~ 175 (325)
T 1v9f_A 170 YEAVAI 175 (325)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999875
No 266
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.34 E-value=0.061 Score=55.50 Aligned_cols=67 Identities=12% Similarity=-0.089 Sum_probs=49.3
Q ss_pred cCeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccE-EEEecccC
Q psy1760 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI-VVVNKIDR 337 (793)
Q Consensus 271 ~~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~I-vvINKiD~ 337 (793)
+.+.+.|||||+...........+..+|.+|+|+.+.......+...++.+...+++.+ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 56789999999965432222223447899999998876655566677777777888887 89999984
No 267
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=94.31 E-value=0.077 Score=60.35 Aligned_cols=103 Identities=16% Similarity=0.127 Sum_probs=76.3
Q ss_pred hhhHHHHHhhcC---cCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCCC-CCceeEeEEEEee
Q psy1760 389 IPLFEAILKYVP---VHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDK-PNKAKINQIRVFK 464 (793)
Q Consensus 389 ~~Ll~~I~~~lp---~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~-~~~~kV~~i~~~~ 464 (793)
-.|+|.+..++. +|.....---.+.|-.+|..+..|.|+-.+|..|+++.|..+.+.+. |. ....+|.+|..+.
T Consensus 385 y~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~--~~~i~~g~i~sl~~~k 462 (501)
T 1zo1_I 385 YNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRD--NVVIYEGELESLRRFK 462 (501)
T ss_dssp SHHHHHTHHHHTTTSSTTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSS--SCCCEEEEBCCEEETT
T ss_pred HHHHHHHHHHHHhhcCceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeC--CeEEEEEEEehhcccC
Confidence 366665544432 33332233334566678877778999999999999999999999865 43 2356888998765
Q ss_pred cCceEEecccCCCcEEEEe--ccceeecCCeEeCC
Q psy1760 465 GLDRVLVNEALSGDIVLIT--GIEEICIGSTICDP 497 (793)
Q Consensus 465 G~~~~~v~~a~aGdIv~i~--gl~~i~iGdtl~~~ 497 (793)
.+++++.+|.-|+|. +..+++.||.|-..
T Consensus 463 ----~~v~e~~~g~ecgi~~~~~~~~~~gd~~~~~ 493 (501)
T 1zo1_I 463 ----DDVNEVRNGMECGIGVKNYNDVRTGDVIEVF 493 (501)
T ss_dssp ----EEESEEETTCCEEEEBCCCTTCCTTCEEEEC
T ss_pred ----ccccEECCCCEEEEEEcCcCCCCCCCEEEEE
Confidence 899999999999985 67789999999543
No 268
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.25 E-value=0.017 Score=61.24 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=43.4
Q ss_pred CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHH----cCCccE-EEEecccC
Q psy1760 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK----LGFKPI-VVVNKIDR 337 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~----~~ip~I-vvINKiD~ 337 (793)
++.+.|||||+..... .+..++..+|.+|+|+++...-...+...++.+.. .+++.+ +|+||++.
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 5789999999865432 22346788999999998764323344445555554 345554 89999984
No 269
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.91 E-value=0.01 Score=63.26 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=20.1
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..++++|++|+|||||+|+|++.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 46899999999999999999764
No 270
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=93.49 E-value=0.017 Score=59.17 Aligned_cols=66 Identities=26% Similarity=0.290 Sum_probs=46.0
Q ss_pred eEEEeeCCCCCChHH-------HHHHHHHHhccccccCCCCCCCCCcceeeeeeccc-c-cccchhccCCceEEEEEE
Q psy1760 11 VVIPKYKPYGLSSNN-------ALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEA-T-KFSNYLSEADKYYEAIIH 79 (793)
Q Consensus 11 g~~~~~Kp~g~ts~~-------~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~-t-k~~~~~~~~~K~Y~~~~~ 79 (793)
-+|++|||.|+-++. ++..+.. ..++...|-||-..||||+++-... . +|..--....|+|.|.+.
T Consensus 15 ~~lvlnKPaG~vs~~~~~~~~tv~dll~~---~~rl~~VgRLD~dTSGLLLlT~dg~~a~~L~~p~~~v~K~Y~a~V~ 89 (237)
T 2gml_A 15 VLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVD 89 (237)
T ss_dssp CEEEEEECTTCBCCSSSSCSSBHHHHSCC---SSCCEEESCCCTTCEEEEEEESCHHHHHHHHHHHHHSCEEEEEEES
T ss_pred EEEEEECCCCCEeCCCCCCCCCHHHHhhc---cCCeeEecCCCCCCeeEEEEEcCHHHHHHHhCccCCCCEEEEEEEc
Confidence 379999999996652 3333321 2468899999999999999986543 2 233222247899999874
No 271
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.14 E-value=0.076 Score=52.95 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=49.9
Q ss_pred cCeEEEEecCCCc-ccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHc-CCccEEEEecccCCC
Q psy1760 271 NGTRINIIDTPGH-ADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL-GFKPIVVVNKIDRSN 339 (793)
Q Consensus 271 ~~~~i~iiDTPGh-~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~-~ip~IvvINKiD~~~ 339 (793)
..+.+.|||||+. ... ....++..+|.+|+++.+.......+...++.+... +.+..+|+|++|...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCcc
Confidence 4578999999997 443 456678999999999988754444555666666663 677789999999754
No 272
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.07 E-value=0.048 Score=57.89 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=18.8
Q ss_pred ceeeeecccCCcceehhhhh
Q psy1760 212 NIAIIAHVDHGKTTLIDHLL 231 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll 231 (793)
.++++|++|+|||||+++|+
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999998
No 273
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=92.81 E-value=0.16 Score=52.17 Aligned_cols=81 Identities=12% Similarity=0.105 Sum_probs=50.2
Q ss_pred cCeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHH------cCCccE-EEEecccCCCCChh
Q psy1760 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK------LGFKPI-VVVNKIDRSNARPE 343 (793)
Q Consensus 271 ~~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~------~~ip~I-vvINKiD~~~a~~~ 343 (793)
..+.+.|||||+.... ....++..+|.+|+++.+.......+...++.+.. .+++++ +|+|+.|.......
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~ 187 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQ 187 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHH
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHH
Confidence 5678999999997543 34567788999999999865322223333333322 256664 89999986432223
Q ss_pred hhHhHHHHHH
Q psy1760 344 WVVDATFDLF 353 (793)
Q Consensus 344 ~v~~~i~~~~ 353 (793)
+..+++++.+
T Consensus 188 ~~~~~l~~~~ 197 (257)
T 1wcv_1 188 QVEAQLRAHF 197 (257)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 3444554443
No 274
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.63 E-value=0.021 Score=62.19 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=20.2
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|++|+|||||+|.|++.
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 5899999999999999999865
No 275
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=92.17 E-value=0.17 Score=50.81 Aligned_cols=66 Identities=20% Similarity=0.159 Sum_probs=49.0
Q ss_pred CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCcc-EEEEecccCCC
Q psy1760 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSN 339 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~-IvvINKiD~~~ 339 (793)
.+.+.|||||+... .....++..+|.+|+|+++.......+...++.+...+.+. -+|+||+|...
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCccc
Confidence 46789999998654 45677889999999999876543445556666676667665 57899998643
No 276
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=92.03 E-value=0.18 Score=52.60 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=50.6
Q ss_pred CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccE-EEEecccCCC
Q psy1760 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI-VVVNKIDRSN 339 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~I-vvINKiD~~~ 339 (793)
.+.+.|||||+..... .....+..+|.+|+|+.+...........++.+...+.+++ +|+|++|...
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 3579999999975432 23345678999999999987666677777777887888876 8999999643
No 277
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.94 E-value=0.019 Score=57.27 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.1
Q ss_pred cceeeeecccCCcceehhhhhhcc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
+-++|+|++|+|||||+++|+...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhC
Confidence 468999999999999999998653
No 278
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=91.75 E-value=0.26 Score=56.46 Aligned_cols=81 Identities=12% Similarity=0.058 Sum_probs=64.7
Q ss_pred CceEEEEEEeeeCC---CceEEEEEEeecccccCCEEEEecCCCCC-CCceeEeEEEEeecCceEEecccCCCcEEEEe-
Q psy1760 409 PLQLQIISLEYSSY---LGKIGIGRILSGRIKSLQDVVIMNGPDDK-PNKAKINQIRVFKGLDRVLVNEALSGDIVLIT- 483 (793)
Q Consensus 409 p~~~~V~~~~~~~~---~G~v~~grV~sG~lk~G~~v~~~~~~~g~-~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~- 483 (793)
.=.+.|..++..+. .|.|+-.+|..|+|+.+..+.+.+. |. ....++.+|..|. .+++++.+|.-|+|.
T Consensus 447 ~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~--~~~i~~g~i~slk~~k----~~v~ev~~g~ecgi~~ 520 (537)
T 3izy_P 447 IGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRN--GHVIWKGSLISLKHHK----DDTSVVKTGMDCGLSL 520 (537)
T ss_dssp SSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESS--SSEEEEEECCCCCCSS----CCCSEEETTCEEEEES
T ss_pred EEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecC--CEEEEEEEEehhcccC----cccceEcCCCEEEEEE
Confidence 34566667766553 6789999999999999999999975 53 2356788887665 799999999999985
Q ss_pred -c-cceeecCCeEe
Q psy1760 484 -G-IEEICIGSTIC 495 (793)
Q Consensus 484 -g-l~~i~iGdtl~ 495 (793)
+ ..+++.||+|-
T Consensus 521 ~~~~~~~~~gd~ie 534 (537)
T 3izy_P 521 DEEKIEFKVGDAII 534 (537)
T ss_dssp SSSCSSCSCCCEEE
T ss_pred cCcccCCCCCCEEE
Confidence 6 77999999983
No 279
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=91.74 E-value=0.15 Score=52.29 Aligned_cols=65 Identities=23% Similarity=0.280 Sum_probs=48.4
Q ss_pred CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCcc-EEEEecccCC
Q psy1760 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRS 338 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~-IvvINKiD~~ 338 (793)
++.+.|||||+... .....++..+|.+|+|+.+.......+...++.+...+.+. -+|+|++|..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 57899999998654 55667889999999999876543445555666666667665 4899999864
No 280
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=91.34 E-value=0.2 Score=52.43 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=46.0
Q ss_pred CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHH------cCCccE-EEEecccCCC
Q psy1760 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK------LGFKPI-VVVNKIDRSN 339 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~------~~ip~I-vvINKiD~~~ 339 (793)
.+.+.|||||+.... ....++..+|.+|+++.+...........++.+.. .+++++ +|+|+.|...
T Consensus 154 ~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 154 DYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp GCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred CCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 467999999997543 34556778999999999876544444444444443 256654 8899999643
No 281
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=91.22 E-value=0.17 Score=41.97 Aligned_cols=62 Identities=15% Similarity=0.218 Sum_probs=53.9
Q ss_pred EEEEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEE
Q psy1760 609 NLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLI 672 (793)
Q Consensus 609 ~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~ 672 (793)
+..+.+|=..+|.|...|.+..+.+.+.+. +..+.+...+|....-.|...|..+|+|+..+
T Consensus 9 ~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y--~~~V~l~v~vp~~~~~~~~~~L~d~t~G~~~~ 70 (76)
T 3lh2_S 9 EYTLQANWFDITGILWLLGQVDGKIINSDV--QAFVLLRVALPAAKVAEFSAKLADFSGGSLQL 70 (76)
T ss_dssp EEEEEECHHHHHHHHHHHHHTTCEEEEEEE--EEEEEEEEEECC-CC-CHHHHHHHHHTTCCCB
T ss_pred eEEEEEcccCHHHHHHHHHHCCCEEEcccc--cCeEEEEEEECHHHHHHHHHHHHHHhCCEEEE
Confidence 467889999999999999999999999988 34699999999999999999999999998643
No 282
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.18 E-value=0.087 Score=55.80 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=19.9
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++++|++|+|||||+++|.+.
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTT
T ss_pred eEEEECCCCCcHHHHHHHhccc
Confidence 5789999999999999999764
No 283
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=90.90 E-value=0.4 Score=50.61 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=52.1
Q ss_pred CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccE-EEEecccCC
Q psy1760 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI-VVVNKIDRS 338 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~I-vvINKiD~~ 338 (793)
.+.+.|||||+..... ........+|.+|+|+.+......+....++.+...+.+++ +|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 3579999999976543 23335678999999999988777788888888888888875 889999864
No 284
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.86 E-value=0.03 Score=63.29 Aligned_cols=105 Identities=13% Similarity=0.180 Sum_probs=56.0
Q ss_pred cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccc-cceEEeeeeeEEeecCeEEEEecCCCcccc--h
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKE-RGITIFSKNCSIEYNGTRINIIDTPGHADF--G 287 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~e-rGiTi~~~~~~~~~~~~~i~iiDTPGh~df--~ 287 (793)
..|.++|.+|+||||+..+|....+... ......+....... .|. .....++|+.|...| .
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~~----~~t~~~~~d~~r~~~~g~------------~~~~~ifd~~g~~~~r~r 103 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFIG----VPTREFNVGQYRRDMVKT------------YKSFEFFLPDNEEGLKIR 103 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT----CCEEEEEHHHHHHHHHCS------------CCCGGGGCTTCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhccC----CCceEEecchhhhhhccC------------CCcccccCCCCHHHHHHH
Confidence 3789999999999999999976532110 00000000000000 010 122356788886322 2
Q ss_pred HHH--------HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEE
Q psy1760 288 GEV--------ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 331 (793)
Q Consensus 288 ~ev--------~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~Ivv 331 (793)
... ...+..+++.++|+|++..-..+-..++..+.+.+.+++++
T Consensus 104 e~~~~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l 155 (469)
T 1bif_A 104 KQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFV 155 (469)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 221 33444578889999998753333334445566667665443
No 285
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.23 E-value=0.19 Score=50.64 Aligned_cols=65 Identities=17% Similarity=0.209 Sum_probs=47.5
Q ss_pred cCeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCcc-EEEEecccC
Q psy1760 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDR 337 (793)
Q Consensus 271 ~~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~-IvvINKiD~ 337 (793)
..+.+.|||||+.... ....++..+|.+|+++++............+.+...+++. .+++||.+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 4577899999986543 4556789999999999886533344455566666777754 689999983
No 286
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=89.79 E-value=0.62 Score=47.63 Aligned_cols=65 Identities=17% Similarity=0.100 Sum_probs=53.2
Q ss_pred EEEEEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEE
Q psy1760 608 ENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLIS 673 (793)
Q Consensus 608 ~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~ 673 (793)
+++.|.+|.+|.|.+++.|.+. |.+...+..++|...+.+.+|..-.-.+...+.+.|+|.|.+.
T Consensus 185 m~l~v~ip~~~~~~~~~~l~~~-~~v~~ee~~~dgs~~~v~~i~pg~~~~~~~~v~~~tkG~~~~~ 249 (252)
T 2wbm_A 185 VRVAIKIPGEMAGSAYGVISNF-GKITNEEWQNDGSWIAVVEIPGGLQDSFYQKLSELTGGNVETR 249 (252)
T ss_dssp EEEEEEECGGGHHHHHHHHHHH-CEEEEEEECTTSCEEEEEEEEGGGHHHHHHHHHHHTTTCCEEE
T ss_pred EEEEEEEcHHHHHHHHHHHHhh-CeeeeecccCCCcEEEEEEECCccHHHHHHHHHHhcCCeEEEE
Confidence 5788999999999999999654 7887766545566678899998766678888999999999765
No 287
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=89.72 E-value=0.53 Score=49.35 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=51.8
Q ss_pred CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCcc-EEEEecccCCC
Q psy1760 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSN 339 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~-IvvINKiD~~~ 339 (793)
.+.+.|||||...... ........+|.+|+|+.+...........++.+...+.++ -+|+||+|...
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 3569999999976543 2344567899999999998766667777788888888876 58999999654
No 288
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=89.40 E-value=0.44 Score=48.92 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=46.8
Q ss_pred cCeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHc--CCccEEEEecccCC
Q psy1760 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL--GFKPIVVVNKIDRS 338 (793)
Q Consensus 271 ~~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~--~ip~IvvINKiD~~ 338 (793)
..+.+.|||||+... .....++..+|.+|+++.+...-.......++.+... +.++.+|+|+.+..
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~ 210 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKN 210 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTT
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCc
Confidence 357799999998653 3566778889999999998654333344555666655 34667999999543
No 289
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=88.73 E-value=0.1 Score=50.57 Aligned_cols=22 Identities=9% Similarity=0.369 Sum_probs=20.1
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
-++|+|++|+|||||++.|+..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5799999999999999999865
No 290
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=88.70 E-value=0.63 Score=47.25 Aligned_cols=66 Identities=17% Similarity=0.140 Sum_probs=53.3
Q ss_pred EEEEEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEe
Q psy1760 608 ENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISH 674 (793)
Q Consensus 608 ~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~ 674 (793)
+++.|.+|.+|.|.+++.|.+ -|.+...+..++|.....+.+|..-.-.+...+.+.|+|.|.+..
T Consensus 170 m~~~v~vp~~~~~~~~~~l~~-~~~v~~ee~~~dgs~~~v~~Ippg~~~~~~~~l~~~tkG~~~~~v 235 (240)
T 1t95_A 170 MEIAIKIPPEHTGRAISALYN-FGGVTREEWQRDGSWICVMRIPSGMYGDLMDLLGKVAKGEALTKV 235 (240)
T ss_dssp EEEEEEECGGGHHHHHHHHHH-HCCEEEEEECTTSCEEEEEEEEGGGHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEEEcHHHHHHHHHHHHh-hCeeeeecccCCCcEEEEEEECCccHHHHHHHHHHhcCCeEEEEE
Confidence 567899999999999999955 577777766455667788999986656778889999999997654
No 291
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=88.64 E-value=0.29 Score=49.74 Aligned_cols=65 Identities=8% Similarity=0.127 Sum_probs=46.1
Q ss_pred CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcC---------CccEEEEecccCC
Q psy1760 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG---------FKPIVVVNKIDRS 338 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~---------ip~IvvINKiD~~ 338 (793)
.+.+.|||||+... .....++..+|.+|+|+++...-...+...++.+...+ .+.-+|+|+.|..
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~ 186 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcc
Confidence 57899999998544 46677889999999999886533334444555555443 3557899999853
No 292
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.60 E-value=0.53 Score=43.68 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=20.6
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.+|.|.|.+|+|||+|+.++...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999998654
No 293
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=88.47 E-value=0.11 Score=50.56 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.6
Q ss_pred ceeeeecccCCcceehhhhhhcc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
+++|+|++|+|||||++.|.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998764
No 294
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=88.46 E-value=0.93 Score=52.58 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=62.3
Q ss_pred CCceEEEE--EEeeeCCCceEEEEEEeecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEecccCCCcEEEEe--
Q psy1760 408 NPLQLQII--SLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT-- 483 (793)
Q Consensus 408 ~p~~~~V~--~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~-- 483 (793)
.|-.+.|. .++..+. |.|+-.+|..|+|+.|..+.+ + +|. ...+|.+|..+. .++++|.+|.-|+|.
T Consensus 462 ~~~~~~i~~~~~f~~~~-~~i~g~~v~~G~~~~~~~~~~-~--~~~-~~g~i~sl~~~k----~~v~~~~~g~e~gi~~~ 532 (594)
T 1g7s_A 462 KPASIRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMN-D--DGE-TVGTVESMQDKG----ENLKSASRGQKVAMAIK 532 (594)
T ss_dssp CCEEEEEEEEEEEECSS-SEEEEEEEEEEEEETTCEEEC-T--TSC-EEEEEEEEEETT----EEESEEETTCCEEEEEE
T ss_pred eeEEEEEecceEEcCCC-CeEEEEEEecCEEecCCeEEe-c--CCc-EEEEEehhcccC----ccccccCCCCEEEEEEe
Confidence 34455444 4666665 899999999999999999987 3 353 567889998765 899999999999985
Q ss_pred cc---ceeecCCeEeC
Q psy1760 484 GI---EEICIGSTICD 496 (793)
Q Consensus 484 gl---~~i~iGdtl~~ 496 (793)
+. .+++.||.|-.
T Consensus 533 ~~~~~~~~~~~d~~~~ 548 (594)
T 1g7s_A 533 DAVYGKTIHEGDTLYV 548 (594)
T ss_dssp TCCBTTTBCTTCEEEE
T ss_pred CcccCCCCCCCCEEEE
Confidence 54 57899999854
No 295
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.38 E-value=0.11 Score=51.18 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.5
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
+.++|+|++|+|||||++.|++.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999864
No 296
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=87.93 E-value=0.54 Score=52.48 Aligned_cols=108 Identities=16% Similarity=0.123 Sum_probs=53.5
Q ss_pred cceeeeecccCCcceehhhhhhccCcc------cccc--ccccccccchhhccccceEEeeeeeEEee---cCeEEEEec
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSGTF------RKNQ--NINARIMDSNEIEKERGITIFSKNCSIEY---NGTRINIID 279 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~------~~~~--~v~~~~~D~~~~e~erGiTi~~~~~~~~~---~~~~i~iiD 279 (793)
.-|+|+|..++|||+|+|.|+...+.. .... .....+. .......+||-+-.....+.. .+..+.++|
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~-~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllD 146 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR-GGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCC-CSSSCCCCSEEEESSCEEEECTTSCEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeC-CCCCCcCceEEEecCcccccCCCCCeeEEEEEe
Confidence 357899999999999999776432100 0000 0000000 011222356554433333322 235799999
Q ss_pred CCCcccchHH-----HHHHhh--ccCcEEEEEeCCCCCCchhHHHHHHH
Q psy1760 280 TPGHADFGGE-----VERILS--MVDNVLLLIDAVEGPMPQTRFVTRKA 321 (793)
Q Consensus 280 TPGh~df~~e-----v~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~ 321 (793)
|.|..|-... ..-++. .++..|+=+ ...+..+....+...
T Consensus 147 TEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~--~~~i~~~~L~~L~~~ 193 (457)
T 4ido_A 147 TQGTFDSQSTLRDSATVFALSTMISSIQVYNL--SQNVQEDDLQHLQLF 193 (457)
T ss_dssp ECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEE--ESSCCHHHHHHHHHH
T ss_pred ccCCCCcccCccccHHHHHHHHHHhhheeecc--cccCCHHHHHHHHHH
Confidence 9997654321 112222 345555443 344555555555443
No 297
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=87.91 E-value=1.1 Score=44.29 Aligned_cols=67 Identities=10% Similarity=0.103 Sum_probs=42.0
Q ss_pred CeEEEEecCCCcccc--h--HHHHHHhhccC-cEEEEEeCCCCCCchhHHHHHHHHHcCCccE-EEEecccCC
Q psy1760 272 GTRINIIDTPGHADF--G--GEVERILSMVD-NVLLLIDAVEGPMPQTRFVTRKALKLGFKPI-VVVNKIDRS 338 (793)
Q Consensus 272 ~~~i~iiDTPGh~df--~--~ev~~~l~~aD-~allVVDa~~g~~~qt~~~l~~~~~~~ip~I-vvINKiD~~ 338 (793)
++.+.||||||.... . -.....+...+ .+|+|+++..+...++...++.+...+++++ +|+|++|..
T Consensus 108 ~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 180 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred hCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCc
Confidence 578999999975421 1 11122233333 5888888765444455556666667788864 789999864
No 298
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=87.49 E-value=0.21 Score=52.15 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=28.4
Q ss_pred CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCC
Q psy1760 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAV 307 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~ 307 (793)
.+.+.|||||+.. ......++..+|.+|+++.+.
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESS
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCC
Confidence 4678999999975 456778899999999999875
No 299
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=87.38 E-value=0.15 Score=50.56 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.3
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..++|+|++|+|||||++.|.+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998754
No 300
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=87.17 E-value=0.14 Score=50.05 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.4
Q ss_pred ceeeeecccCCcceehhhhhhcc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
-++|+|++|+|||||++.|.+..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58999999999999999998753
No 301
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=87.13 E-value=0.56 Score=47.13 Aligned_cols=66 Identities=11% Similarity=0.099 Sum_probs=48.3
Q ss_pred CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCc---cEEEEecccCCC
Q psy1760 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK---PIVVVNKIDRSN 339 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip---~IvvINKiD~~~ 339 (793)
.+.+.|||||+..+. ....++..+|.+|+++.+.......+...++.+...+.+ .-+|+|+.|...
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS 186 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC
Confidence 467899999986543 556678999999999988654444556666777666632 468999998643
No 302
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=86.71 E-value=0.16 Score=50.34 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.4
Q ss_pred ceeeeecccCCcceehhhhhhcc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
-++|+|+.|+|||||++.|.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999997653
No 303
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=86.62 E-value=0.49 Score=52.39 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.6
Q ss_pred cceeeeecccCCcceehhhhhhcc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
.-|.++|.+|+||||+..+|....
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc
Confidence 357899999999999999997653
No 304
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=86.58 E-value=0.16 Score=49.35 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.9
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
-++|+|+.|+|||||++.|+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999865
No 305
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=86.57 E-value=0.17 Score=49.02 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.5
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..++|+|++|+|||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999999765
No 306
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=86.04 E-value=0.19 Score=47.72 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.5
Q ss_pred cceeeeecccCCcceehhhhhhccC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
..|+|+|.+|+|||||...|....+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999976543
No 307
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=85.68 E-value=0.19 Score=50.36 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.5
Q ss_pred ceeeeecccCCcceehhhhhhcc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
-++|+|+.|+|||||++.|++..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998753
No 308
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.53 E-value=1.2 Score=41.24 Aligned_cols=23 Identities=4% Similarity=0.040 Sum_probs=20.4
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.+|.|.|.+|+|||+++.++...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 58999999999999999998654
No 309
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=85.44 E-value=0.19 Score=48.26 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=18.1
Q ss_pred ceeeeecccCCcceehhhhh
Q psy1760 212 NIAIIAHVDHGKTTLIDHLL 231 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll 231 (793)
-++++|++|+|||||++.++
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 57999999999999999865
No 310
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=84.65 E-value=0.23 Score=50.07 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.6
Q ss_pred ceeeeecccCCcceehhhhhhcc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
-++|+|+.|+|||||++.|++..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57999999999999999998753
No 311
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=84.64 E-value=0.23 Score=49.27 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.6
Q ss_pred ceeeeecccCCcceehhhhhhcc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
-++|+|++|+|||||++.|+...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58999999999999999998764
No 312
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=84.55 E-value=0.24 Score=48.84 Aligned_cols=22 Identities=41% Similarity=0.451 Sum_probs=20.0
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999765
No 313
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=84.51 E-value=0.23 Score=46.84 Aligned_cols=24 Identities=17% Similarity=-0.015 Sum_probs=20.8
Q ss_pred ceeeeecccCCcceehhhhhhccC
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
.|+|+|.+|+||||+...|....+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999976533
No 314
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=84.30 E-value=0.24 Score=47.18 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.5
Q ss_pred ceeeeecccCCcceehhhhhhcc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
.++++|+.|+|||||++.|.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999997753
No 315
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=84.25 E-value=0.24 Score=48.37 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=20.0
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|++|+|||||++.|...
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999765
No 316
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=84.22 E-value=0.24 Score=50.40 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.7
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5799999999999999999754
No 317
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=84.00 E-value=1.2 Score=45.47 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=21.1
Q ss_pred cceeeeecccCCcceehhhhhhcc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
..|.++|.+|+||||+...|....
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999997654
No 318
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=83.86 E-value=0.26 Score=49.71 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=19.6
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999654
No 319
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=83.52 E-value=0.27 Score=48.23 Aligned_cols=25 Identities=20% Similarity=0.481 Sum_probs=21.5
Q ss_pred cceeeeecccCCcceehhhhhhccC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
..++|+|.+|+|||||++.|....|
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3689999999999999999976644
No 320
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=83.33 E-value=0.27 Score=46.20 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.4
Q ss_pred ceeeeecccCCcceehhhhhhcc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
.|+++|.+|+||||+.+.| ...
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 5889999999999999999 543
No 321
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=83.27 E-value=0.32 Score=48.53 Aligned_cols=22 Identities=23% Similarity=0.046 Sum_probs=19.9
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999765
No 322
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=83.11 E-value=0.29 Score=47.35 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=19.5
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++++|++|+|||||++.|...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 5789999999999999999753
No 323
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=82.89 E-value=0.3 Score=48.10 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.1
Q ss_pred cceeeeecccCCcceehhhhhhcc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
..|+++|++|+|||||++.|....
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 368999999999999999998654
No 324
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=82.57 E-value=0.31 Score=46.46 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=21.2
Q ss_pred cceeeeecccCCcceehhhhhhccC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
..++|+|.+|+|||||...|....+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 3689999999999999999876543
No 325
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=82.56 E-value=0.34 Score=48.68 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=14.8
Q ss_pred ceeeeecccCCcceehhhhh-hc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLL-RQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll-~~ 233 (793)
-++|+|+.|+|||||++.|. ..
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 57999999999999999998 54
No 326
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=82.51 E-value=0.46 Score=47.20 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.7
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++.|.|++|+|||||+.++...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 58899999999999999999765
No 327
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=82.46 E-value=0.32 Score=47.73 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.6
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
+-|.|+|++|+|||||+++|+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45889999999999999999865
No 328
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=82.41 E-value=2.2 Score=36.32 Aligned_cols=59 Identities=12% Similarity=0.027 Sum_probs=44.4
Q ss_pred eecccccCCEEEEecCCCCCCCceeEeEEEEeecCceEEeccc-CCCcEEEEeccceeecCCeE
Q psy1760 432 LSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEA-LSGDIVLITGIEEICIGSTI 494 (793)
Q Consensus 432 ~sG~lk~G~~v~~~~~~~g~~~~~kV~~i~~~~G~~~~~v~~a-~aGdIv~i~gl~~i~iGdtl 494 (793)
....+.+||.|.++.. +|.....+|.+|+.-.| .+++.| .||++|.|.--..+..||.|
T Consensus 26 ~rN~f~~GD~iEi~~P-~g~~~~~~v~~m~d~~G---~~i~~A~~~~~~v~i~~~~~~~~~dil 85 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGP-EIENFTQVIEKIWDEDG---NELDAARHPLQIVKFKVKRPLFPYNMM 85 (89)
T ss_dssp ESSCBCTTCEEEEEST-TSCCEEEECCCEEETTS---CEESCBCSTTCEEEEECSSCCCTTCEE
T ss_pred EcCCcCCCCEEEEEcC-CCCcEEEEeHHeEcCCC---CEeeEcCCCCeEEEEECCCCCCCCCEE
Confidence 4678999999998876 56555677888875444 689998 89999998643356677766
No 329
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=82.36 E-value=0.32 Score=49.56 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=19.8
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|++.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999754
No 330
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=82.25 E-value=0.33 Score=49.64 Aligned_cols=23 Identities=9% Similarity=0.263 Sum_probs=20.3
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..++|+|+.|+|||||++.|.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 36799999999999999999754
No 331
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=82.23 E-value=0.33 Score=49.20 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.8
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|++.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999754
No 332
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=82.00 E-value=0.33 Score=50.03 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=19.7
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999654
No 333
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=81.90 E-value=0.36 Score=49.02 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=21.3
Q ss_pred cceeeeecccCCcceehhhhhhccC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
..++|+|++|+|||||++.|....+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999984433
No 334
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=81.89 E-value=0.34 Score=50.17 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.6
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999654
No 335
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=81.88 E-value=0.33 Score=50.43 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=19.8
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5799999999999999999754
No 336
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=81.86 E-value=0.34 Score=46.52 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.6
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..+.+.|++|+|||||+.++.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999765
No 337
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=81.79 E-value=0.34 Score=49.46 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=19.9
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999754
No 338
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=81.77 E-value=0.34 Score=50.57 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=19.7
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999654
No 339
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=81.68 E-value=1.6 Score=47.16 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=21.8
Q ss_pred ccccccceeeeecccCCcceehhhhhhc
Q psy1760 206 KLTLDKNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 206 ~f~le~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.+..-.-+.|.|++|+|||||+.+++..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3333346789999999999999988754
No 340
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=81.65 E-value=0.35 Score=48.52 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=19.8
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999754
No 341
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=81.64 E-value=0.37 Score=47.21 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=21.4
Q ss_pred cceeeeecccCCcceehhhhhhccC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
..|+|+|.+|+|||||+..|....+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999976643
No 342
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=81.58 E-value=0.36 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.6
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..++|+|++|+|||||++.|++.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 46899999999999999999765
No 343
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=81.57 E-value=0.36 Score=45.85 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=19.4
Q ss_pred ceeeeecccCCcceehhhhhh
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLR 232 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~ 232 (793)
.|.+.|.+|+||||+...|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 588999999999999999976
No 344
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=81.55 E-value=0.35 Score=46.88 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=20.3
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.-++|+|.+|+|||||+++|+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35789999999999999999865
No 345
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=81.53 E-value=0.24 Score=47.86 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=20.3
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..++|+|.+|+|||||++.|++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999765
No 346
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=81.48 E-value=0.36 Score=49.53 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.8
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999754
No 347
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.34 E-value=0.37 Score=49.19 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.7
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999754
No 348
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=81.02 E-value=0.37 Score=46.80 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=20.8
Q ss_pred ceeeeecccCCcceehhhhhhccC
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
.|+|+|.+|+||||+...|....+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999977543
No 349
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=81.02 E-value=0.38 Score=49.36 Aligned_cols=22 Identities=27% Similarity=0.216 Sum_probs=19.7
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999753
No 350
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=80.97 E-value=0.38 Score=49.72 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.9
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999764
No 351
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=80.97 E-value=0.38 Score=47.13 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.5
Q ss_pred cceeeeecccCCcceehhhhhhccC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
..|+|+|.+|+||||+...|....+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999976543
No 352
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=80.93 E-value=0.39 Score=49.74 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.5
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..++|+|+.|+|||||++.|++.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 46899999999999999999764
No 353
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=80.87 E-value=0.7 Score=49.36 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=19.8
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..+.|.|+||+|||+|+-++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 45679999999999999999754
No 354
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=80.86 E-value=0.4 Score=47.70 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=20.9
Q ss_pred cceeeeecccCCcceehhhhhhcc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
..|+|+|.+|+||||+.+.|....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999997653
No 355
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=80.67 E-value=3.2 Score=43.05 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=20.2
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++.|.|++|+|||+|+.++...
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988654
No 356
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=80.64 E-value=0.4 Score=49.73 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.7
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5799999999999999999654
No 357
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=80.63 E-value=0.47 Score=44.59 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.6
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..++|.|++|+|||||+.++.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999765
No 358
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=80.56 E-value=0.4 Score=51.00 Aligned_cols=23 Identities=26% Similarity=0.172 Sum_probs=20.2
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.-++|+|++|+|||||++.|.+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhh
Confidence 36899999999999999998754
No 359
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=80.47 E-value=0.42 Score=45.92 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=20.3
Q ss_pred ceeeeecccCCcceehhhhhhcc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
.|+|.|.+|+||||+...|....
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999997653
No 360
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=80.45 E-value=0.42 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.8
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||+..|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5789999999999999998765
No 361
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=80.42 E-value=0.99 Score=47.07 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.5
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++.+.|++|+|||+|+.++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 37899999999999999998765
No 362
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=80.41 E-value=0.41 Score=49.41 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=19.7
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999754
No 363
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=80.40 E-value=0.46 Score=45.81 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.3
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..|.++|.+|+||||+...|...
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999998755
No 364
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=80.36 E-value=0.41 Score=49.17 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.8
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5799999999999999999754
No 365
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=80.34 E-value=0.42 Score=45.94 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.5
Q ss_pred cceeeeecccCCcceehhhhhhccC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
.+|.++|.+|+||||+...|....+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999976543
No 366
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=80.26 E-value=0.44 Score=46.60 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=19.4
Q ss_pred ceeeeecccCCcceehhhhhh
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLR 232 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~ 232 (793)
.|+|+|.+|+||||+.+.|..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999976
No 367
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=80.25 E-value=0.46 Score=45.25 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=20.6
Q ss_pred ceeeeecccCCcceehhhhhhcc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
.|.++|.+|+||||+..+|....
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58899999999999999998764
No 368
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=80.11 E-value=0.47 Score=50.83 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.9
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.+++|+|+.|+|||||++.|++.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999865
No 369
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=80.04 E-value=0.43 Score=49.68 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=19.8
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999754
No 370
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=79.81 E-value=0.49 Score=46.76 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.7
Q ss_pred ceeeeecccCCcceehhhhhhccC
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
+|+|+|.+|+||||+...|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999976543
No 371
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=79.70 E-value=0.45 Score=49.38 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=19.8
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999764
No 372
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=79.68 E-value=0.45 Score=49.35 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.7
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999654
No 373
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=79.66 E-value=3.3 Score=43.72 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.6
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++.|.|++|+|||+|+.++...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 57899999999999999999655
No 374
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=79.66 E-value=0.34 Score=47.61 Aligned_cols=22 Identities=36% Similarity=0.347 Sum_probs=19.5
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
-|+|.|.+|+||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999755
No 375
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=79.63 E-value=0.45 Score=48.96 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=19.7
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999754
No 376
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=79.54 E-value=0.47 Score=46.87 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=20.6
Q ss_pred ceeeeecccCCcceehhhhhhccC
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
+|+|+|.+|+||||+...|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999976543
No 377
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=79.52 E-value=0.46 Score=46.55 Aligned_cols=23 Identities=26% Similarity=0.145 Sum_probs=20.4
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..|+|+|.+|+|||||...|...
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998765
No 378
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=79.45 E-value=0.46 Score=49.70 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=19.7
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5799999999999999999754
No 379
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=79.44 E-value=0.5 Score=47.52 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=19.1
Q ss_pred cceeeeecccCCcceehhhhh
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLL 231 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll 231 (793)
..++|+|++|+|||||+..|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 468999999999999999887
No 380
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=79.29 E-value=0.47 Score=48.20 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=20.7
Q ss_pred ceeeeecccCCcceehhhhhhccC
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
.|+|+|+.|+|||||++.|....|
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999976533
No 381
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=79.28 E-value=0.47 Score=45.30 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.0
Q ss_pred ceeeeecccCCcceehhhhhhccC
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
+|.|+|.+|+||||+...|....+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999976543
No 382
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=79.13 E-value=0.71 Score=45.69 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=22.2
Q ss_pred ccccccceeeeecccCCcceehhhhhhc
Q psy1760 206 KLTLDKNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 206 ~f~le~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.+..-.-++|+|++|+|||||+..|+..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3333346899999999999999999763
No 383
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=79.03 E-value=0.51 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=20.8
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.+++|+|+.|+|||||+++|++.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999999865
No 384
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=78.98 E-value=0.48 Score=45.48 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.3
Q ss_pred ceeeeecccCCcceehhhhhhcc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
.|+++|.+|+||||+...|....
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997543
No 385
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A
Probab=78.97 E-value=0.62 Score=47.70 Aligned_cols=65 Identities=11% Similarity=0.045 Sum_probs=54.1
Q ss_pred EEEEEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEe
Q psy1760 608 ENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISH 674 (793)
Q Consensus 608 ~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~ 674 (793)
+++.|.+|.+|.|.+++.|.+-.|.+...+.. ++ ..+.+.+|..-.-.+...+.+.|+|.|.+..
T Consensus 174 m~l~v~vp~~~~~~~~~~l~~~~~~v~~ee~~-~~-~~~v~~I~pg~~~~~~~~v~~~tkG~~~~ev 238 (252)
T 2kdo_A 174 MRLRFILPVNEGKKLKEKLKPLIKVIESEDYG-QQ-LEIVCLIDPGCFREIDELIKKETKGKGSLEV 238 (252)
T ss_dssp CCEEEECBHHHHHHHTTTHHHHTCEEEEECCS-SB-CCEEECCCGGGHHHHHHHHHHHTTTTSEEEE
T ss_pred EEEEEEEcHHHHHHHHHHHHHhhCcceeeecc-CC-eEEEEEECCcchHHHHHHHHHhcCCCEEEEE
Confidence 45689999999999999999988998877653 44 6788899987777888889999999997654
No 386
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=78.69 E-value=4.2 Score=39.81 Aligned_cols=117 Identities=17% Similarity=0.164 Sum_probs=85.3
Q ss_pred HHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchh--hHHHHHHHHHhcCceEEEecCEEEEEEecCeeeCeEEEEEE
Q psy1760 535 RQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGEL--HLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFV 612 (793)
Q Consensus 535 ~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~Gel--hL~il~e~lrreg~e~~vs~P~V~yre~~g~llEP~~~~~i 612 (793)
..|++.|.+.-..|+.+-|.+-= +. +.++.-|-. .-....+-|+.-++ ....|...+.+
T Consensus 72 ~piL~~L~~~~l~nv~vVVtRyf--GG-i~LG~ggLvraY~~~a~~al~~~~~----------------~~~~~~~~~~~ 132 (191)
T 2cve_A 72 RPILHAIEAQGLDRVAVLVVRYF--GG-VKLGAGGLVRAYGGVAAEALRRAPK----------------VPLVERVGLAF 132 (191)
T ss_dssp HHHHHHHHHTTBCSEEEEEEEEC--CS-SCCHHHHHHHHHHHHHHHHHHHSCE----------------EECCCEEEEEE
T ss_pred HHHHHHHHHcCCCcEEEEEEEEe--CC-cccCcchHHHHHHHHHHHHHHhCCc----------------EEEeeeeEEEE
Confidence 35787888888889888777652 22 444333321 22455555554332 12445667889
Q ss_pred EeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEE
Q psy1760 613 DIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLI 672 (793)
Q Consensus 613 ~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~ 672 (793)
.+|=..+|.|...|.+.. ++.+.+.. +.-+.++..+|....-.|...|..+|+|+..+
T Consensus 133 ~~~Y~~~~~v~~~l~~~~-~i~~~~y~-~~gV~~~~~v~~~~~~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 133 LVPFAEVGRVYALLEARA-LKAEETYT-PEGVRFALLLPKPEREGFLRALLDATRGQVAL 190 (191)
T ss_dssp EECGGGHHHHHHHHHHTT-CCEEEEEE-TTEEEEEEEEEHHHHHHHHHHHHHHTTTCCEE
T ss_pred EEchhhHHHHHHHHHHcC-ceeccEEc-CCeEEEEEEECHHHHHHHHHHHHHHhCCeEEe
Confidence 999999999999999988 99888873 32289999999999999999999999998754
No 387
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=78.51 E-value=2.6 Score=42.12 Aligned_cols=116 Identities=15% Similarity=0.100 Sum_probs=85.0
Q ss_pred HHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchh-h-HHHHHHHHHhcCceEEEecCEEEEEEecCeeeCeEEEEEEE
Q psy1760 536 QIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGEL-H-LTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVD 613 (793)
Q Consensus 536 ~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~Gel-h-L~il~e~lrreg~e~~vs~P~V~yre~~g~llEP~~~~~i~ 613 (793)
.|++.|.+.-..|+.+-|.+-= |. +.++.-|-+ | =....+-|+.-++ + ...|...+.|.
T Consensus 85 piL~~L~~~~l~nv~vVVtRyf--GG-ikLG~ggLvraY~~aa~~aL~~~~~--------v--------~~~~~~~~~i~ 145 (217)
T 1vi7_A 85 PMLAQLMGSGVGEITAVVVRYY--GG-ILLGTGGLVKAYGGGVNQALRQLTT--------Q--------RKTPLTEYTLQ 145 (217)
T ss_dssp HHHHHHHHHTCCSEEEECCEEC--CS-CCCCHHHHHHHHHHHHHHHHTTCCE--------E--------EECCCEEEEEE
T ss_pred HHHHHHHHcCCCCEEEEEEEEe--CC-ceecccHHHHHHHHHHHHHHHhCCe--------E--------EEeeeeEEEEE
Confidence 4787888888889887776642 22 445443321 1 1344444443222 1 13455677899
Q ss_pred eCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEE
Q psy1760 614 IEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLI 672 (793)
Q Consensus 614 vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~ 672 (793)
+|=...|.|...|.+..+++.+.+. . ..+.++..+|....-.|...|..+|+|+..+
T Consensus 146 ~~Y~~~~~v~~~l~~~~~~i~~~~y-~-~~V~~~l~v~~~~~~~~~~~l~~~t~G~~~~ 202 (217)
T 1vi7_A 146 CEYHQLTGIEALLGQCDGKIINSDY-Q-AFVLLRVALPAAKVAEFSAKLADFSRGSLQL 202 (217)
T ss_dssp ECTTTHHHHHHHHHHTTCEEEEEEE-S-SSEEEEEEECSSTHHHHHHHHHHHHTTCCCC
T ss_pred EccchHHHHHHHHHHCCCEEEceEe-c-CCEEEEEEECHHHHHHHHHHHHHHhCCeEEE
Confidence 9999999999999999999999988 3 4699999999999999999999999998744
No 388
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=78.51 E-value=0.51 Score=45.28 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=20.3
Q ss_pred ceeeeecccCCcceehhhhhhcc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
.|+|.|.+|+||||+...|....
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999997643
No 389
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=78.43 E-value=0.52 Score=45.37 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=20.7
Q ss_pred cceeeeecccCCcceehhhhhhcc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
..|.++|.+|+||||+...|....
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999997653
No 390
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=78.35 E-value=0.53 Score=46.17 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=19.2
Q ss_pred ceeeeecccCCcceehhhhhh
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLR 232 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~ 232 (793)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 391
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=78.29 E-value=0.65 Score=53.39 Aligned_cols=59 Identities=17% Similarity=0.063 Sum_probs=34.1
Q ss_pred chhHHHHHHHHHhhh---hccchHHHHHHhhcccccccccceeeeecccCCcceehhhhhhc
Q psy1760 175 KGTYIRVLSEDIGKM---LGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 175 ~gtyIRsL~~dIg~~---L~~~a~l~~LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
+||.||...+.=... .........+|+.....+..-..++|+|.+|+|||||.++|...
T Consensus 331 sgt~ir~~Lr~G~~~p~~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 331 SGEEFQRRMRAGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CHHHHHHHHTTTCCCCTTTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCccccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHh
Confidence 578888764321111 00012233444432212222257899999999999999999765
No 392
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=78.15 E-value=0.56 Score=46.06 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.5
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..|+|+|.+|+|||||++.|...
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999765
No 393
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=78.15 E-value=4.8 Score=42.00 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.7
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++.|.|++|+|||+|+.++...
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999754
No 394
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=77.91 E-value=0.99 Score=45.54 Aligned_cols=22 Identities=23% Similarity=0.077 Sum_probs=17.3
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
-+.+.|.+|+||||++-.++..
T Consensus 14 i~litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3567899999999987766544
No 395
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=77.80 E-value=0.65 Score=48.26 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=22.6
Q ss_pred cccccceeeeecccCCcceehhhhhhc
Q psy1760 207 LTLDKNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 207 f~le~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
+.....+.+.|++|+|||||++++.+.
T Consensus 41 l~~~~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 41 LVTPAGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp CCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 344467999999999999999999765
No 396
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=77.76 E-value=0.56 Score=44.88 Aligned_cols=24 Identities=38% Similarity=0.365 Sum_probs=21.1
Q ss_pred cceeeeecccCCcceehhhhhhcc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
.+|.++|.+|+||||+...|....
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 478999999999999999997653
No 397
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.63 E-value=3.2 Score=47.07 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=21.5
Q ss_pred cceeeeecccCCcceehhhhhhcc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
+.+.|.|++|+|||||+.++....
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 588999999999999999998764
No 398
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=77.62 E-value=0.56 Score=45.27 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.7
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|..|+|||||+.+|+..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999999764
No 399
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=77.58 E-value=0.65 Score=47.20 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=22.7
Q ss_pred cccccceeeeecccCCcceehhhhhhc
Q psy1760 207 LTLDKNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 207 f~le~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
+.+...+.|.|++|+|||||+.++.+.
T Consensus 46 ~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 46 ARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp CCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 344467999999999999999999765
No 400
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=77.39 E-value=0.57 Score=44.26 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.6
Q ss_pred cceeeeecccCCcceehhhhhhccC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
.+|+|.|.+|+||||+...|....+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999876533
No 401
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=77.37 E-value=0.59 Score=49.16 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.8
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5799999999999999999754
No 402
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=77.23 E-value=0.63 Score=52.99 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=20.7
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.+++|+|++|||||||+++|++.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999765
No 403
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=77.15 E-value=0.42 Score=50.72 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.3
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..++|+|+.|+|||||++.|++.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 36899999999999999999764
No 404
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=77.06 E-value=0.59 Score=45.66 Aligned_cols=23 Identities=22% Similarity=0.040 Sum_probs=20.4
Q ss_pred ceeeeecccCCcceehhhhhhcc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
.|+|.|.+|+||||+...|....
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 58999999999999999997653
No 405
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=76.97 E-value=0.6 Score=48.36 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.3
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..++|+|+.|+|||||++.|.+.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 35799999999999999999765
No 406
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=76.91 E-value=0.63 Score=49.23 Aligned_cols=23 Identities=30% Similarity=0.211 Sum_probs=20.3
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.-++|+|+.|+|||||++.|...
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998764
No 407
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=76.79 E-value=0.6 Score=44.83 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=21.1
Q ss_pred cceeeeecccCCcceehhhhhhccC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
..|+|+|.+|+||||+...|....+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999876543
No 408
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=76.32 E-value=0.69 Score=44.15 Aligned_cols=24 Identities=25% Similarity=0.095 Sum_probs=16.7
Q ss_pred ceeeeecccCCcceehhhhhhccC
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
.|.+.|.+|+||||+...|....+
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 689999999999999999976543
No 409
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=76.31 E-value=0.68 Score=44.32 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.2
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
-.+|+|+.|+|||||+++|...
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999764
No 410
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=76.30 E-value=0.57 Score=50.77 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.9
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..++|+|+.|+|||||++.|.+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999765
No 411
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=76.27 E-value=0.68 Score=45.47 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=19.6
Q ss_pred cceeeeecccCCcceehhhhhh
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLR 232 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~ 232 (793)
.-++|+|.+|+|||||++.|..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998875
No 412
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=76.19 E-value=0.66 Score=44.79 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.6
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.+|.++|.+|+||||+...|...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999998765
No 413
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=76.19 E-value=0.65 Score=50.35 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=20.1
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||+++|++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999764
No 414
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=76.02 E-value=0.7 Score=47.30 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=21.2
Q ss_pred cceeeeecccCCcceehhhhhhccC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
..|+|+|+.|+|||||+..|....+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3689999999999999999985433
No 415
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=76.02 E-value=0.69 Score=44.63 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.2
Q ss_pred cceeeeecccCCcceehhhhhhccC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
..|+|+|.+|+||||+...|....+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999976543
No 416
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=75.93 E-value=0.67 Score=50.40 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=19.6
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
-++|+|+.|+|||||++.|.+.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 4799999999999999999754
No 417
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=75.78 E-value=0.7 Score=46.44 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.5
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.-|+|.|..|+|||||++.|...
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999765
No 418
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=75.68 E-value=0.68 Score=44.69 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=19.4
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
-|++.|.+|+||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999754
No 419
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=75.63 E-value=0.71 Score=44.62 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=21.4
Q ss_pred cceeeeecccCCcceehhhhhhccC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
..|+|+|.+|+||||+...|....+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999976543
No 420
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=75.59 E-value=0.71 Score=44.89 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=20.8
Q ss_pred cceeeeecccCCcceehhhhhhcc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
..|+|+|.+|+||||+.+.|....
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368999999999999999997653
No 421
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=75.57 E-value=0.86 Score=46.33 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=21.5
Q ss_pred cceeeeecccCCcceehhhhhhccC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
..|.|.|.+|+||||+...|....+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999976543
No 422
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=75.50 E-value=0.72 Score=50.05 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=19.7
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
-++|+|+.|+|||||++.|.+.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4799999999999999999764
No 423
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=75.46 E-value=0.68 Score=43.55 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=20.5
Q ss_pred ceeeeecccCCcceehhhhhhccC
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
+|.|.|.+|+||||+...|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999976533
No 424
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=75.42 E-value=0.71 Score=45.67 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.3
Q ss_pred ceeeeecccCCcceehhhhhhcc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
+|+|.|.+|+||||+...|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997653
No 425
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=75.21 E-value=1.1 Score=44.22 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=21.9
Q ss_pred ccccccceeeeecccCCcceehhhhhhc
Q psy1760 206 KLTLDKNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 206 ~f~le~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.+..-..++|+|++|+|||||+..|+..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3333346899999999999999998754
No 426
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=75.17 E-value=0.73 Score=44.19 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.7
Q ss_pred ceeeeecccCCcceehhhhhhccC
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
.|.|+|.+|+||||+...|....+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999976533
No 427
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=75.15 E-value=0.72 Score=43.53 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=20.7
Q ss_pred ceeeeecccCCcceehhhhhhccC
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
.|.|.|.+|+||||+...|....+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999876533
No 428
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=75.10 E-value=0.81 Score=45.71 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=21.3
Q ss_pred cceeeeecccCCcceehhhhhhccC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
..|+|+|.+|+||||+...|....+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999976543
No 429
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=75.03 E-value=0.74 Score=50.20 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.6
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..++|+|++|+|||||++.|++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999864
No 430
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=75.00 E-value=0.84 Score=47.19 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=22.7
Q ss_pred cccccceeeeecccCCcceehhhhhhc
Q psy1760 207 LTLDKNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 207 f~le~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
+.+...+.|+|++|+|||||+.++...
T Consensus 70 ~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 70 ARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 344467999999999999999999765
No 431
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=74.86 E-value=4.9 Score=40.82 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.2
Q ss_pred cceeeeecccCCcceehhhhhhcc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
.++.|.|.+|+|||+|+.++....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 578999999999999999997653
No 432
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=74.85 E-value=0.75 Score=49.14 Aligned_cols=22 Identities=32% Similarity=0.220 Sum_probs=19.5
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
-++|+|++|||||||++.|...
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988654
No 433
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=74.77 E-value=0.76 Score=44.97 Aligned_cols=23 Identities=26% Similarity=0.164 Sum_probs=20.3
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..|+|.|.+|+||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999754
No 434
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=74.49 E-value=0.82 Score=44.59 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.4
Q ss_pred cceeeeecccCCcceehhhhhhccC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
..|+|+|.+|+||||+...|....+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999976544
No 435
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=74.35 E-value=0.87 Score=48.36 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.9
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
-++|+|..|||||||++.|++.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999865
No 436
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=74.28 E-value=0.78 Score=49.69 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.7
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
-++|+|+.|+|||||++.|.+.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5799999999999999999754
No 437
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=74.22 E-value=0.8 Score=43.86 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.1
Q ss_pred cceeeeecccCCcceehhhhhhccC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
..|+|+|.+|+||||+...|....+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999976533
No 438
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=74.18 E-value=0.77 Score=44.10 Aligned_cols=22 Identities=32% Similarity=0.202 Sum_probs=19.5
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.|++.|.+|+||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 439
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=74.18 E-value=0.79 Score=48.15 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=20.0
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.-|+|+|.+|+|||||++.|...
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988654
No 440
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=74.09 E-value=0.81 Score=45.48 Aligned_cols=25 Identities=16% Similarity=0.124 Sum_probs=21.5
Q ss_pred cceeeeecccCCcceehhhhhhccC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
..|.|+|.+|+||||+...|....+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999976644
No 441
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=73.93 E-value=0.81 Score=49.67 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=19.7
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
-++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999999764
No 442
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=73.82 E-value=3.1 Score=40.13 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.7
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
++.|.|++|+|||+|+.++...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 443
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=73.81 E-value=0.83 Score=44.73 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.9
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.|+|.|.+|+||||+.+.|...
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 444
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=73.79 E-value=0.87 Score=44.17 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.7
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..|+|+|.+|+||||+...|...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 36899999999999999999765
No 445
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=73.70 E-value=0.8 Score=46.91 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.7
Q ss_pred ceeeeecccCCcceehhhhhhccC
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
.++|+|.+|+|||||..+|....+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 578999999999999999976543
No 446
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=73.59 E-value=0.82 Score=44.61 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.2
Q ss_pred cceeeeecccCCcceehhhhhhccC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
..|+|+|.+|+||||+...|....+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999976533
No 447
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=73.51 E-value=3.1 Score=44.33 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.8
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++.|.|++|+|||||+.++...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999765
No 448
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=73.48 E-value=0.84 Score=49.58 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.7
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
-++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4799999999999999999764
No 449
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=73.33 E-value=0.85 Score=49.86 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=19.8
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
-++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 4799999999999999999764
No 450
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=73.13 E-value=0.85 Score=45.24 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=20.9
Q ss_pred cceeeeecccCCcceehhhhhhcc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
..|.++|.+|+||||+...|....
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999997653
No 451
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=73.11 E-value=0.87 Score=49.67 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=19.7
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
-++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4799999999999999999754
No 452
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=73.07 E-value=0.93 Score=47.47 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.5
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..|.++|.+|+|||||+.+|...
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999765
No 453
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=72.90 E-value=0.88 Score=49.60 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.7
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
-++|+|+.|+|||||++.|.+.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4799999999999999999754
No 454
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=72.51 E-value=4 Score=42.83 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=20.8
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++.|.|.+|+|||+++.++...
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHHHHHh
Confidence 58999999999999999999765
No 455
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=72.49 E-value=0.91 Score=46.62 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.4
Q ss_pred cceeeeecccCCcceehhhhhhccC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
.+|+|+|.+|+||||+...|....+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999976433
No 456
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=72.47 E-value=0.91 Score=42.57 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=18.5
Q ss_pred eeeeecccCCcceehhhhhhc
Q psy1760 213 IAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 213 IaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.+|+|+.|+|||||++++...
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999998753
No 457
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=72.13 E-value=0.93 Score=50.21 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.6
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..++|+|+.|+|||||+++|+..
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999865
No 458
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=71.95 E-value=1.4 Score=48.01 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=21.1
Q ss_pred cccccceeeeecccCCcceehhhhhhc
Q psy1760 207 LTLDKNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 207 f~le~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
+..-..+.|.|.+++|||||+-.++..
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 333346788999999999999888654
No 459
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=71.91 E-value=0.98 Score=42.65 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.6
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++.|.|++|+|||+|+.++...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999765
No 460
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=71.83 E-value=0.96 Score=43.22 Aligned_cols=23 Identities=22% Similarity=0.107 Sum_probs=20.0
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..|+++|.+|+||||+.+.|...
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998654
No 461
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=71.80 E-value=0.97 Score=44.97 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.3
Q ss_pred ceeeeecccCCcceehhhhhhccCc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSGT 236 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~~ 236 (793)
+|.|+|+|||||+|....|....+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 4789999999999999999876543
No 462
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=70.84 E-value=1.1 Score=49.24 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=19.7
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
-++|+|+.|+|||||++.|.+.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5799999999999999999754
No 463
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=70.84 E-value=1 Score=44.97 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=20.1
Q ss_pred ceeeeecccCCcceehhhhhhcc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
.|.|.|.+|+||||+...|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997653
No 464
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=70.74 E-value=0.77 Score=49.59 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.7
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
-++|+|+.|+|||||++.|.+.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 5799999999999999999754
No 465
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=70.27 E-value=4.7 Score=52.86 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=22.2
Q ss_pred cccccceeeeecccCCcceehhhhhhc
Q psy1760 207 LTLDKNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 207 f~le~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
+..-+++.+.|++|+|||+|+-++...
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~e 1450 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAA 1450 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 334468899999999999999998754
No 466
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=70.15 E-value=1.1 Score=44.38 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.8
Q ss_pred ceeeeecccCCcceehhhhhhccC
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
.|.++|.+|+||||+...|....+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999976543
No 467
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=70.05 E-value=2.9 Score=45.73 Aligned_cols=79 Identities=15% Similarity=0.088 Sum_probs=45.4
Q ss_pred CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCCCCC-------chhHHHHHHHHHcCCc-----cEEEEecccCCC
Q psy1760 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPM-------PQTRFVTRKALKLGFK-----PIVVVNKIDRSN 339 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~g~~-------~qt~~~l~~~~~~~ip-----~IvvINKiD~~~ 339 (793)
.+.+.|||||.... ..+..++..+|.+|+|+.+..-.. ......++.+...+.+ ++.++|+.|...
T Consensus 247 ~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~~~ 324 (403)
T 3ez9_A 247 DYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTGKR 324 (403)
T ss_dssp GCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---CH
T ss_pred cCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCCch
Confidence 57899999998654 456678889999999997643111 1222344445555543 255899988321
Q ss_pred CChhhhHhHHHHHH
Q psy1760 340 ARPEWVVDATFDLF 353 (793)
Q Consensus 340 a~~~~v~~~i~~~~ 353 (793)
......+.+.+.|
T Consensus 325 -~~~~~~~~~~~~~ 337 (403)
T 3ez9_A 325 -DHETSHSLAREVY 337 (403)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHh
Confidence 1223344444444
No 468
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=69.69 E-value=0.77 Score=49.72 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.7
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
-++|+|+.|+|||||++.|.+.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5799999999999999999754
No 469
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=69.54 E-value=6.7 Score=41.74 Aligned_cols=28 Identities=4% Similarity=-0.030 Sum_probs=20.7
Q ss_pred cccccccceeeeecccCCcceehhhhhhc
Q psy1760 205 DKLTLDKNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 205 g~f~le~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
|.+..- .+-|.|++++|||||+-+++..
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 445443 4678999999999998777543
No 470
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=69.43 E-value=1.1 Score=44.17 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=19.2
Q ss_pred ceeeeecccCCcceehhhhhh
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLR 232 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~ 232 (793)
.|+|.|.+||||||+.+.|..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 471
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=69.18 E-value=1.2 Score=47.47 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.1
Q ss_pred cceeeeecccCCcceehhhhhhcc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
..+.+.|++|+|||||+..+.+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999997653
No 472
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=69.17 E-value=2.4 Score=48.20 Aligned_cols=61 Identities=18% Similarity=0.079 Sum_probs=39.2
Q ss_pred chhHHHHHHHHHhh---hhccchHHHHHHhhcccccccccceeeeecccCCcceehhhhhhccC
Q psy1760 175 KGTYIRVLSEDIGK---MLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 175 ~gtyIRsL~~dIg~---~L~~~a~l~~LRRt~~g~f~le~nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
+||.||.+.+.=.. ........+.||+.....+..-.+|.++|.+|+||||+..+|....+
T Consensus 357 Sgt~IR~~Lr~G~~~P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 357 SGTELRRRLRVGGEIPEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CHHHHHHHHHHTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhCCCCCCccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 47888887553221 11222334556665533343336899999999999999999976643
No 473
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=69.09 E-value=1.2 Score=45.75 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.8
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.|.++|.+|+||||+...|...
T Consensus 6 lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 474
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=69.03 E-value=1.6 Score=48.63 Aligned_cols=29 Identities=17% Similarity=0.096 Sum_probs=22.1
Q ss_pred cccccccceeeeecccCCcceehhhhhhc
Q psy1760 205 DKLTLDKNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 205 g~f~le~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
+.+..-.-+.|.|.||+|||||+-.+...
T Consensus 192 gGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 192 YGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp SSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 34444456889999999999998887654
No 475
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=68.98 E-value=3.4 Score=47.00 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.6
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.|.++|.+|+||||+...|...
T Consensus 37 lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998654
No 476
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=68.82 E-value=1.1 Score=48.26 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=21.6
Q ss_pred ccccccceeeeecccCCcceehhhhhhc
Q psy1760 206 KLTLDKNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 206 ~f~le~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.+..-.-+.|.|.||+|||||+-.+...
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4433346789999999999999887654
No 477
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=68.75 E-value=1.3 Score=46.18 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.1
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.-++|+|++|+|||||+..|...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 45789999999999999988754
No 478
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=68.60 E-value=1.2 Score=44.62 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=21.0
Q ss_pred cceeeeecccCCcceehhhhhhcc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
.+|.|+|.+|+||||+...|....
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999997653
No 479
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=68.53 E-value=4.1 Score=41.41 Aligned_cols=66 Identities=11% Similarity=0.070 Sum_probs=39.3
Q ss_pred CeEEEEecCCCcccchHHH-HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHH----cCCcc-EEEEecccC
Q psy1760 272 GTRINIIDTPGHADFGGEV-ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK----LGFKP-IVVVNKIDR 337 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~ev-~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~----~~ip~-IvvINKiD~ 337 (793)
.+.+.||||||........ .-....+|.+|+++.+.......+...++.+.. .+++. -+|+|+.+.
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 4779999999964321111 112257999999998764322233333444433 25565 578999874
No 480
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=68.51 E-value=2.2 Score=45.97 Aligned_cols=28 Identities=29% Similarity=0.299 Sum_probs=21.7
Q ss_pred ccccccceeeeecccCCcceehhhhhhc
Q psy1760 206 KLTLDKNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 206 ~f~le~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.+..-..+.|.|++|+|||||+-.++..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3433356889999999999999888644
No 481
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=68.35 E-value=2 Score=41.98 Aligned_cols=27 Identities=19% Similarity=0.019 Sum_probs=21.8
Q ss_pred ccccccceeeeecccCCcceehhhhhh
Q psy1760 206 KLTLDKNIAIIAHVDHGKTTLIDHLLR 232 (793)
Q Consensus 206 ~f~le~nIaIiG~~~~GKSTLv~~Ll~ 232 (793)
.+..-.-++|+|++|+|||||+..|+.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 443334679999999999999999975
No 482
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=67.92 E-value=1.4 Score=44.88 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=21.2
Q ss_pred cceeeeecccCCcceehhhhhhccC
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
..|+|.|.+|+||||+...|....+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3699999999999999998876444
No 483
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=67.56 E-value=1.3 Score=41.74 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.5
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++.|.|++|+|||+|+.++...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999998765
No 484
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=67.39 E-value=1.4 Score=47.85 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=18.4
Q ss_pred eeeeecccCCcceehhhhhhc
Q psy1760 213 IAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 213 IaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.+|+|+.|+|||||++++...
T Consensus 26 ~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999998754
No 485
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=67.37 E-value=1.4 Score=43.50 Aligned_cols=23 Identities=30% Similarity=0.250 Sum_probs=20.1
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..|+++|.+|+||||+...|...
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998654
No 486
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=67.36 E-value=1.5 Score=44.49 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.7
Q ss_pred cccceeeeecccCCcceehhhhhhc
Q psy1760 209 LDKNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 209 le~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
....+.|.|++|+|||||+.++...
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3467999999999999999999765
No 487
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=67.29 E-value=9.9 Score=38.11 Aligned_cols=80 Identities=15% Similarity=0.083 Sum_probs=49.6
Q ss_pred cCeEEEEecCCCcc-----cchHHHHHHhh-ccCcEEEEEeCCCCCCchhHHHHHHHHHcCCcc-EEEEecccCCCCChh
Q psy1760 271 NGTRINIIDTPGHA-----DFGGEVERILS-MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNARPE 343 (793)
Q Consensus 271 ~~~~i~iiDTPGh~-----df~~ev~~~l~-~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~-IvvINKiD~~~a~~~ 343 (793)
.++.+.+||+||.. +... ....++ ...-+|+|+++..+...++...++.+...++++ =+++|+++......+
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~-~adla~~l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~~~~ 187 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTT-QLDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSNIKYID 187 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCB-HHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTTCSCHH
T ss_pred ccCCEEEEECCCccccccccchh-HHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCcchhhH
Confidence 35779999998732 1111 112222 234589999998776666766777777888887 488999986433333
Q ss_pred hhHhHHHH
Q psy1760 344 WVVDATFD 351 (793)
Q Consensus 344 ~v~~~i~~ 351 (793)
...+.+.+
T Consensus 188 ~~~~~l~~ 195 (228)
T 3of5_A 188 EQINTIEE 195 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 488
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=67.08 E-value=0.61 Score=47.25 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=18.6
Q ss_pred eeeeecccCCcceehhhhhhc
Q psy1760 213 IAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 213 IaIiG~~~~GKSTLv~~Ll~~ 233 (793)
++|+|+.|+|||||+++|.+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 468899999999999999765
No 489
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=67.06 E-value=1.4 Score=44.44 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.8
Q ss_pred cceeeeecccCCcceehhhhhhcc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQS 234 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~~ 234 (793)
..|+|.|.+|+||||+++.|....
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 358999999999999999997653
No 490
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=67.06 E-value=1.4 Score=49.34 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.4
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..++|+|+.|+|||||++.|++.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 36899999999999999999764
No 491
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=66.47 E-value=1.5 Score=42.63 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.7
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++.|.|++|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999998765
No 492
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=66.41 E-value=1.4 Score=42.71 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=20.8
Q ss_pred ceeeeecccCCcceehhhhhhccC
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
.|+|.|.+|+||||+...|....+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999976543
No 493
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=66.20 E-value=1.7 Score=50.39 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.4
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..++|+|+.|+|||||++.|++.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999764
No 494
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=65.96 E-value=1.5 Score=49.39 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=19.8
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhcC
Confidence 6799999999999999999764
No 495
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=65.75 E-value=5.2 Score=41.30 Aligned_cols=66 Identities=11% Similarity=0.092 Sum_probs=38.7
Q ss_pred CeEEEEecCCCcccchHH-HHHHhhccCcEEEEEeCCCCCCchhHHHHHHHHH----cCCcc-EEEEecccC
Q psy1760 272 GTRINIIDTPGHADFGGE-VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK----LGFKP-IVVVNKIDR 337 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~e-v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~----~~ip~-IvvINKiD~ 337 (793)
.+.+.||||||....... .......+|.+|+++.+...-...+...++.+.. .+++. -+|+|+.+.
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 578999999996422111 1112357999999998754222222233333332 36664 478899863
No 496
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=65.58 E-value=1.7 Score=50.36 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.4
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..++|+|+.|+|||||++.|++.
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 46899999999999999999764
No 497
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=65.53 E-value=1.5 Score=42.92 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.5
Q ss_pred cceeeeecccCCcceehhhhhhc
Q psy1760 211 KNIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 211 ~nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
..|+|+|.+||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999998765
No 498
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=65.36 E-value=1.6 Score=44.40 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.9
Q ss_pred ceeeeecccCCcceehhhhhhccC
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQSG 235 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~~~ 235 (793)
.|+|.|++|+||||+...|....+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999976543
No 499
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=65.29 E-value=4.1 Score=39.42 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=17.3
Q ss_pred ceeeeecccCCcceehhhhhhc
Q psy1760 212 NIAIIAHVDHGKTTLIDHLLRQ 233 (793)
Q Consensus 212 nIaIiG~~~~GKSTLv~~Ll~~ 233 (793)
-+.+.|++|+||||++-.++..
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999998666543
No 500
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=65.21 E-value=4.2 Score=43.87 Aligned_cols=35 Identities=11% Similarity=-0.031 Sum_probs=28.0
Q ss_pred CeEEEEecCCCcccchHHHHHHhhccCcEEEEEeCCC
Q psy1760 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVE 308 (793)
Q Consensus 272 ~~~i~iiDTPGh~df~~ev~~~l~~aD~allVVDa~~ 308 (793)
.+.+.|||||... ......++..||.+|+++.+..
T Consensus 153 ~yD~VIID~pP~l--~~~~~~aL~~aD~viip~~~~~ 187 (361)
T 3pg5_A 153 RYDVIFFDVGPSL--GPFNRTVLLGCDAFVTPTATDL 187 (361)
T ss_dssp CCSEEEEECCSCC--SHHHHHHHTTCSEEEEEECCSH
T ss_pred CCCEEEEECCCCc--CHHHHHHHHHCCEEEEEecCCh
Confidence 5789999999754 3456667888999999998763
Done!