RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1760
(793 letters)
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative,
midwest center for structural genomics, GTP-BIN
nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio
parahaemolyticus}
Length = 332
Score = 389 bits (1000), Expect = e-130
Identities = 154/294 (52%), Positives = 208/294 (70%), Gaps = 4/294 (1%)
Query: 482 ITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRL 541
TG+ E+ I TIC + LP L++DEPT+T+ F VN SP AG EG F+T+R I RL
Sbjct: 3 ATGLGELKISDTICAQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERL 62
Query: 542 DHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNG 601
+ E+ +N+ LRV Q D + VSGRGELHL+ILIENMRREG+EL+VSRP VI +G
Sbjct: 63 EKELVHNVALRVEQTDDPDK-FRVSGRGELHLSILIENMRREGFELAVSRPEVIIXEEDG 121
Query: 602 ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNE 661
+L EP+E + +D+ E +QG IM+ + R G+L ++ + K RVR+++ +PSRGLIGFQ E
Sbjct: 122 QLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPDGKGRVRMDFIMPSRGLIGFQTE 181
Query: 662 FITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLWKLQDRGRLF 721
F+TLT G+GL+ H F+ Y P ++G+R NGVLI+ +GKA+ +L+ LQ+RGRLF
Sbjct: 182 FMTLTSGSGLLYHTFDHYGPH---XGGNIGQRVNGVLIANAAGKALTNALFNLQERGRLF 238
Query: 722 INHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLINIIKIIL 775
I H VYEGM+IGIHSRDNDL VN +K KQLTN+R+SG+D+A L I + L
Sbjct: 239 IGHGVEVYEGMVIGIHSRDNDLTVNALKGKQLTNVRASGTDDAQVLTPPIVMTL 292
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop,
lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli}
SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Length = 327
Score = 310 bits (796), Expect = 2e-99
Identities = 99/204 (48%), Positives = 139/204 (68%), Gaps = 1/204 (0%)
Query: 8 PVSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYL 67
++ V+ KP G+SSN+AL+K+K + NA + G+TG LDP ATG+LP+C GEATKFS YL
Sbjct: 23 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 82
Query: 68 SEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSA 127
++DK Y I LG T+T D +G+I++ + + S E + L F G I QIP MYSA
Sbjct: 83 LDSDKRYRVIARLGQRTDTSDADGQIVE-ERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 141
Query: 128 LKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIG 187
LKY+G LY+YAR GI + R+ R I +Y++ I + L L IHCSKGTYIR + +D+G
Sbjct: 142 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 201
Query: 188 KMLGCGAHLKYLRRIGIDKLTLDK 211
+ LGCGAH+ YLRR+ + K +++
Sbjct: 202 EKLGCGAHVIYLRRLAVSKYPVER 225
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation,
lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima}
SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Length = 309
Score = 302 bits (776), Expect = 7e-97
Identities = 73/199 (36%), Positives = 114/199 (57%), Gaps = 1/199 (0%)
Query: 12 VIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEAD 71
++ YKP G +S++ + +++ L +KVG+ GTLDPFA G+L + + T+ + +
Sbjct: 5 ILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLK 64
Query: 72 KYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYK 131
K Y + LG+ TET DI G++++ + + E I + + +F G+ Q+PP YSA KYK
Sbjct: 65 KVYWVKMRLGLITETFDITGEVVE-ERECNVTEEEIREAIFSFVGEYDQVPPAYSAKKYK 123
Query: 132 GIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLG 191
G LYK AR G I + +KI+KI ++ ++ R+ S GTYIR L DIG LG
Sbjct: 124 GERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGTYIRSLCMDIGYKLG 183
Query: 192 CGAHLKYLRRIGIDKLTLD 210
CGA L R + T++
Sbjct: 184 CGATAVELVRESVGPHTIE 202
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification,
structural genomics, PSI, structure initiative; 1.90A
{Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Length = 316
Score = 292 bits (749), Expect = 1e-92
Identities = 70/208 (33%), Positives = 113/208 (54%), Gaps = 4/208 (1%)
Query: 7 SPVSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNY 66
+ ++ KP G++S++ + + + + ++VG+ GTLDP ATG+L + ATK
Sbjct: 3 ATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGL 62
Query: 67 LSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYS 126
L+ A K Y A I LG TT T D EG+++ +IE I+ + G+I Q+P S
Sbjct: 63 LTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVS 122
Query: 127 ALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYT----IPYLTLRIHCSKGTYIRVL 182
A+K G Y+ AR G +++ + R I+I + ++ + + + I CS GTYIR L
Sbjct: 123 AIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRAL 182
Query: 183 SEDIGKMLGCGAHLKYLRRIGIDKLTLD 210
+ D+G LG G H+ LRR + + LD
Sbjct: 183 ARDLGDALGVGGHVTALRRTRVGRFELD 210
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex,
box H/ACA, snoRNP, pseudouridine synthase, RNA
modification; 1.95A {Methanocaldococcus jannaschii}
SCOP: b.122.1.1 d.265.1.2
Length = 357
Score = 236 bits (604), Expect = 3e-71
Identities = 63/228 (27%), Positives = 97/228 (42%), Gaps = 42/228 (18%)
Query: 12 VIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEAD 71
V+ KP G +S+ +K +LN K G+ GTLDP TG+LP+ ATK
Sbjct: 68 VVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERATKTIPMWHIPP 127
Query: 72 KYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYK 131
K Y ++HL D I ++ F G+I Q PP+ +A+
Sbjct: 128 KEYVCLMHLHRDASEED------------------ILRVFKEFTGRIYQRPPLKAAV--- 166
Query: 132 GIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLG 191
KR+LR KI+++ ++D + R+ C GTYIR L EDIG+ LG
Sbjct: 167 --------------KRRLRIRKIHELELLDKDGKDVLFRVKCQSGTYIRKLCEDIGEALG 212
Query: 192 CGAHLKYLRRIGIDKLTLDKNI-------AIIAHVDHGKTTLIDHLLR 232
AH++ LRR + A + + G + +++
Sbjct: 213 TSAHMQELRRTKSGCFEEKDAVYLQDLLDAYVFWKEDGDEEELRRVIK 260
>2aus_C Pseudouridine synthase; isomerase, structural protein,
isomerase-structural protein; 2.10A {Pyrococcus abyssi}
PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A*
2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Length = 334
Score = 231 bits (591), Expect = 1e-69
Identities = 68/229 (29%), Positives = 99/229 (43%), Gaps = 43/229 (18%)
Query: 12 VIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEAD 71
VI KP G +S+ + IK +LN +K G+ GTLDP +G+LP+ AT+ L A
Sbjct: 48 VINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLPVALERATRVVQALLPAG 107
Query: 72 KYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYK 131
K Y A++HL GD+ + I ++ F G+I Q PP+ SA+
Sbjct: 108 KEYVALMHLH-----GDVPE-------------DKIRAVMKEFEGEIIQRPPLRSAV--- 146
Query: 132 GIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLG 191
KR+LR K+Y I I++ + R+ GTYIR L IG LG
Sbjct: 147 --------------KRRLRTRKVYYIEILEIDGRDVLFRVGVEAGTYIRSLIHHIGLALG 192
Query: 192 CGAHLKYLRRIGIDKLTLDKNI--------AIIAHVDHGKTTLIDHLLR 232
GAH+ LRR D+ + + G I ++
Sbjct: 193 VGAHMAELRRTRSGPFKEDETLVTLHDLVDYYHFWKEDGIEEYIRKAIQ 241
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase,
pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces
cerevisiae} PDB: 3uai_A
Length = 400
Score = 213 bits (545), Expect = 3e-62
Identities = 59/207 (28%), Positives = 87/207 (42%), Gaps = 36/207 (17%)
Query: 8 PVSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYL 67
S VI KP SS+ + IK +L +K G++GTLDP TG L +C AT+
Sbjct: 57 ISSGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQ 116
Query: 68 SEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSA 127
A K Y I+ L + + + L N G + Q PP+ SA
Sbjct: 117 QGAGKEYVCIVRLHDALKDEK-----------------DLGRSLENLTGALFQRPPLISA 159
Query: 128 LKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIP--YLTLRIHCSKGTYIRVLSED 185
+KR+LR IY+ +I++ C GTY+R L
Sbjct: 160 -----------------VKRQLRVRTIYESNLIEFDNKRNLGVFWASCEAGTYMRTLCVH 202
Query: 186 IGKMLGCGAHLKYLRRIGIDKLTLDKN 212
+G +LG G H++ LRR+ L+ + N
Sbjct: 203 LGMLLGVGGHMQELRRVRSGALSENDN 229
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 163 bits (413), Expect = 9e-42
Identities = 61/167 (36%), Positives = 90/167 (53%), Gaps = 19/167 (11%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 271
N+++IAHVDHGK+TL D L++++G + AR D+ + E+ERGITI S S+
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSE 80
Query: 272 GTR----------------INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTR 315
+ IN+ID+PGH DF EV L + D L+++D +EG QT
Sbjct: 81 MSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE 140
Query: 316 FVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 362
V R+AL KP+VV+NK+DR+ + + DL+ T E
Sbjct: 141 TVLRQALGERIKPVVVINKVDRALLELQVSKE---DLYQTFARTVES 184
Score = 63.1 bits (153), Expect = 3e-10
Identities = 41/203 (20%), Positives = 85/203 (41%), Gaps = 21/203 (10%)
Query: 405 NSNNPLQLQIISLEYSSYLGK-IGIGRILSGRIKSLQDVVIMN-----GPDDKPNKAKIN 458
+ L L + + +S G+ GR+ +G +KS Q V I G D I
Sbjct: 373 DPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQ 432
Query: 459 QIRVFKGLDRVLVNEALSGDIVLITGIEEICIGS-TICDPSKPNGL-PMLNIDEPTLTIN 516
++ + G +++ +G+I+ + GI++ + + T+ + + M P + +
Sbjct: 433 RVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVA 492
Query: 517 FMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTIL 576
V N A K + + ++ D + + + + V+G GELHL I
Sbjct: 493 VEVKN---ANDLPKLVEGLKRLSKSDPCVLTYM--------SESGEHIVAGTGELHLEIC 541
Query: 577 IENMRRE--GYELSVSRPRVIFK 597
++++ + G L +S P V ++
Sbjct: 542 LQDLEHDHAGVPLKISPPVVAYR 564
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 147 bits (374), Expect = 2e-37
Identities = 88/301 (29%), Positives = 139/301 (46%), Gaps = 38/301 (12%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY- 270
N IIAHVDHGK+TL D LL +G + + +++D+ ++E+ERGIT+ + + Y
Sbjct: 8 NFCIIAHVDHGKSTLADRLLEYTGAISERE-KREQLLDTLDVERERGITVKMQAVRMFYK 66
Query: 271 --NGTR--INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF 326
+G +++IDTPGH DF EV R L+ + LLLIDA +G QT KA++
Sbjct: 67 AKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDL 126
Query: 327 KPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQG 386
I V+NKID +A + V ++ EE I SA K G
Sbjct: 127 VIIPVINKIDLPSADVDRVKKQIEEVLG--LDPEE-----AILASA---------KEGIG 170
Query: 387 NMIP-LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 445
I + EAI+ +P K + PL+ I Y Y G + RI G +K +++M
Sbjct: 171 --IEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLM 228
Query: 446 NGPDDKPNKAK--INQIRVFKGLDRVLVNEALSGDI-VLITGIEEIC---IGSTICDPSK 499
+ + + ++ ++ +GD+ + I+++ IG TI
Sbjct: 229 S------TGKEYEVTEVGAQT-PKMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKN 281
Query: 500 P 500
P
Sbjct: 282 P 282
Score = 32.8 bits (76), Expect = 0.49
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 25/107 (23%)
Query: 569 GELHLTILIENMRREGYELSV--SRPRVIFK---TLNGELYE---PYE--NLFVDIEEIN 618
G LH+ I+ E + RE Y + + + P VI++ E+ E P + + IE +
Sbjct: 346 GLLHMEIVQERLERE-YGVKIITTAPNVIYRVKKKFTDEVIEVRNPMDFPDNAGLIEYVE 404
Query: 619 Q--------------GIIMQKLNYRGGDLKNIEINEKERVRLEYRIP 651
+ G I+Q + G KN+ + V LEY +P
Sbjct: 405 EPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNTVYLEYEMP 451
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 147 bits (373), Expect = 3e-37
Identities = 85/301 (28%), Positives = 151/301 (50%), Gaps = 38/301 (12%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY- 270
N +IIAH+DHGK+TL D +++ G + + A+++DS ++E+ERGITI +++ +++Y
Sbjct: 6 NFSIIAHIDHGKSTLSDRIIQICGGLSDRE-MEAQVLDSMDLERERGITIKAQSVTLDYK 64
Query: 271 --NGTR--INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF 326
+G +N IDTPGH DF EV R L+ + LL++DA +G QT A+++
Sbjct: 65 ASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDL 124
Query: 327 KPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQG 386
+ + V+NKID A PE V + D+ + + SA K G
Sbjct: 125 EVVPVLNKIDLPAADPERVAEEIEDIVG--IDATD-----AVRCSA---------KTGVG 168
Query: 387 NMIP-LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 445
+ + E +++ +P + + PLQ II + +YLG + + RI +G ++ V +M
Sbjct: 169 --VQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVM 226
Query: 446 NGPDDKPNKAK--INQIRVFKGLDRVLVNEALSGDI-VLITGIEEIC---IGSTICDPSK 499
+ +++ +F +V E G++ L+ I++I +G T+
Sbjct: 227 S------TGQTYNADRLGIFT-PKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARN 279
Query: 500 P 500
P
Sbjct: 280 P 280
>2dy1_A Elongation factor G; translocation, GTP complex, structural
genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus}
SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1
PDB: 1wdt_A*
Length = 665
Score = 126 bits (319), Expect = 2e-30
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIE 269
+A++ H GKTTL + LL ++G + + D K T+ + +
Sbjct: 11 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL 70
Query: 270 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 329
+ G R+ ++D PG+ DF GE+ L D L+ + A G T A +LG +
Sbjct: 71 FRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRM 130
Query: 330 VVVNKIDR 337
VVV K+D+
Sbjct: 131 VVVTKLDK 138
Score = 66.8 bits (164), Expect = 2e-11
Identities = 42/224 (18%), Positives = 81/224 (36%), Gaps = 51/224 (22%)
Query: 390 PLFEAILKYVPVHKDNSNN-P---LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 445
PL E IL+ +P + + P ++ ++G++ R+ GR+K +
Sbjct: 263 PLLELILEALPSPTERFGDGPPLAKVFKVQV---DPFMGQVAYLRLYRGRLKP--GDSLQ 317
Query: 446 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPM 505
+ + + ++ + V G D + V EA +G ++ + E + G + KP +
Sbjct: 318 S----EAGQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEV 373
Query: 506 LNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGL----------RVTQ 555
P + + P K R D + L ++ +
Sbjct: 374 PFARLPDPNVPVAL--HP--------------KGRTDEA-RLGEALRKLLEEDPSLKLER 416
Query: 556 NKHDDSIYE-----VSGRGELHLTILIENMRREGYELSVSRPRV 594
+ E + G GELHL E ++ G E+ S P+V
Sbjct: 417 QE------ETGELLLWGHGELHLATAKERLQDYGVEVEFSVPKV 454
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 115 bits (290), Expect = 2e-27
Identities = 71/303 (23%), Positives = 115/303 (37%), Gaps = 57/303 (18%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 271
N+ I H+DHGKTTL L + + D ++RGITI + +
Sbjct: 21 NLGIFGHIDHGKTTLSKVL---TEIASTSA------HDKLPESQKRGITIDIGFSAFKLE 71
Query: 272 GTRINIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPMPQTRFVTRKALKLG 325
RI ++D PGHAD I ++V D L+++DA EGP QT
Sbjct: 72 NYRITLVDAPGHADL------IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFN 125
Query: 326 FKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQ 385
IVV+ K D A E + + L +T + +I SA G+ +
Sbjct: 126 IPIIVVITKSDN--AGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDE----- 178
Query: 386 GNMIPLFEAILKYV--PVHKDNSNNPLQLQI-----ISLEYSSYLGKIGIGRILSGRIKS 438
L I+ + N+ + ++ + I G + G I G +K
Sbjct: 179 -----LKNLIITTLNNAEIIRNTESYFKMPLDHAFPI-----KGAGTVVTGTINKGIVKV 228
Query: 439 LQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--LITGI--EEICIGSTI 494
++ ++ K+ I+ F + V EA +GD V I G+ ++I G +
Sbjct: 229 GDELKVLPINM----STKVRSIQYF----KESVMEAKAGDRVGMAIQGVDAKQIYRGXIL 280
Query: 495 CDP 497
Sbjct: 281 TSK 283
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET:
GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W*
3zvo_Y* 3uoq_W*
Length = 529
Score = 115 bits (289), Expect = 6e-27
Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 32/171 (18%)
Query: 211 KNIAIIAHVDHGKTTLIDHLL------RQSGTFRKNQNINARIMDSNEIEKERGITIFSK 264
+ AII+H D GKTT+ + +L + +GT + + D E+EK+RGI+I +
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTS 73
Query: 265 NCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL 324
Y+ +N++DTPGH DF + R L+ VD L++IDA +G +TR KL
Sbjct: 74 VMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR-------KL 126
Query: 325 GFK-------PIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367
+ PI+ +NK+DR P +L D++ E +L
Sbjct: 127 -MEVTRLRDTPILTFMNKLDRDIRDP-------MELLDEV---ENELKIGC 166
Score = 31.2 bits (71), Expect = 1.4
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 430 RILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC 489
R++SG+ + + + K I+ F DR V EA GDI+ + I
Sbjct: 319 RVVSGKYEKGMKLRQVRT--AKD--VVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQ 374
Query: 490 IGSTICDPSKPN--GLP 504
IG T G+P
Sbjct: 375 IGDTFTQGEMMKFTGIP 391
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis,
translation; HET: GDP; 2.11A {Coxiella burnetii}
Length = 528
Score = 114 bits (287), Expect = 8e-27
Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 32/171 (18%)
Query: 211 KNIAIIAHVDHGKTTLIDHLL------RQSGTFRKNQNINARIMDSNEIEKERGITIFSK 264
+ AII+H D GKTTL + LL + +GT + + D E+EK+RGI++ +
Sbjct: 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTS 73
Query: 265 NCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL 324
Y IN++DTPGHADF + R L+ VD+ L++IDA +G P+T KL
Sbjct: 74 VMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-------KL 126
Query: 325 GFK-------PIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 367
+ PI+ +NK+DR +L D++ E L
Sbjct: 127 -MEVCRLRHTPIMTFINKMDRDTRPS-------IELLDEI---ESILRIHC 166
Score = 31.6 bits (72), Expect = 1.2
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 430 RILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC 489
RI SG+ + + K +IN F R EA GDI+ + I
Sbjct: 318 RIASGQYQKGMKAYHVRL--KKE--IQINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQ 373
Query: 490 IGSTICDPSKPN--GLP 504
IG T + G+P
Sbjct: 374 IGDTFTQGERFKFTGIP 390
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein;
1.90A {Staphylococcus aureus}
Length = 693
Score = 113 bits (285), Expect = 4e-26
Identities = 65/153 (42%), Positives = 86/153 (56%), Gaps = 11/153 (7%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNI-----NARIMDSNEIEKERGITIFSKNC 266
NI I+AH+D GKTT + +L +G + I A MD E E++RGITI S
Sbjct: 12 NIGIMAHIDAGKTTTTERILYYTG---RIHKIGETHEGASQMDWMEQEQDRGITITSAAT 68
Query: 267 SIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF 326
+ + G R+NIIDTPGH DF EVER L ++D + ++DA G PQT V R+A G
Sbjct: 69 TAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGV 128
Query: 327 KPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 359
IV VNK+D+ A E+ V L D+L A
Sbjct: 129 PRIVFVNKMDKLGANFEYSVS---TLHDRLQAN 158
Score = 47.1 bits (113), Expect = 2e-05
Identities = 44/192 (22%), Positives = 74/192 (38%), Gaps = 45/192 (23%)
Query: 422 YLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL 481
Y+GK+ R+ SG + S V N K + ++ ++ R ++ SGDI
Sbjct: 321 YVGKLTFFRVYSGTMTSGSYV--KNSTKGK--RERVGRLLQMHANSRQEIDTVYSGDIAA 376
Query: 482 ITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRL 541
G+++ G T+C L + EP I+ V P K++
Sbjct: 377 AVGLKDTGTGDTLCGEKNDIILESMEFPEPV--IHLSV--EP--------------KSKA 418
Query: 542 DHEIKNNIGL----------RVTQNKHDDSIYE-----VSGRGELHLTILIENMRRE-GY 585
D + K L ++ E + G GELHL IL++ M++E
Sbjct: 419 DQD-KMTQALVKLQEEDPTFHAHTDE------ETGQVIIGGMGELHLDILVDRMKKEFNV 471
Query: 586 ELSVSRPRVIFK 597
E +V P V ++
Sbjct: 472 ECNVGAPMVSYR 483
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational
GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A
2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A*
1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A*
3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Length = 691
Score = 113 bits (285), Expect = 5e-26
Identities = 57/153 (37%), Positives = 83/153 (54%), Gaps = 11/153 (7%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN-----ARIMDSNEIEKERGITIFSKNC 266
NI I AH+D GKTT + +L +G + I A MD E E+ERGITI +
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTG---RIHKIGEVHEGAATMDFMEQERERGITITAAVT 70
Query: 267 SIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF 326
+ + RINIIDTPGH DF EVER + ++D +++ D+ +G PQ+ V R+A K
Sbjct: 71 TCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKV 130
Query: 327 KPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 359
I NK+D++ A V+ + ++L A
Sbjct: 131 PRIAFANKMDKTGADLWLVIR---TMQERLGAR 160
Score = 37.9 bits (89), Expect = 0.014
Identities = 13/34 (38%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 565 VSGRGELHLTILIENMRRE-GYELSVSRPRVIFK 597
+SG GELHL I+++ ++RE + +V +P+V ++
Sbjct: 451 ISGMGELHLEIIVDRLKREFKVDANVGKPQVAYR 484
Score = 35.5 bits (83), Expect = 0.082
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 422 YLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL 481
Y+G++ R+ SG + S V N + K ++ ++ R V E +GD+
Sbjct: 321 YVGRLTFIRVYSGTLTSGSYV--YNTTKGR--KERVARLLRMHANHREEVEELKAGDLGA 376
Query: 482 ITGIEEICIGSTICDPSKP 500
+ G++E G T+ P
Sbjct: 377 VVGLKETITGDTLVGEDAP 395
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP,
50S subunit, cryo-EM, REAL-space refinement,
ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Length = 704
Score = 112 bits (282), Expect = 1e-25
Identities = 64/160 (40%), Positives = 83/160 (51%), Gaps = 18/160 (11%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN-----ARIMDSNEIEKERGITIFS--- 263
NI I AH+D GKTT + +L +G N I A MD E E+ERGITI S
Sbjct: 12 NIGISAHIDAGKTTTTERILFYTG---VNHKIGEVHDGAATMDWMEQEQERGITITSAAT 68
Query: 264 ----KNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTR 319
+ +Y RINIIDTPGH DF EVER + ++D +++ AV G PQ+ V R
Sbjct: 69 TAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR 128
Query: 320 KALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 359
+A K I VNK+DR A VV+ + +L A
Sbjct: 129 QANKYKVPRIAFVNKMDRMGANFLKVVN---QIKTRLGAN 165
Score = 46.3 bits (111), Expect = 4e-05
Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 45/192 (23%)
Query: 422 YLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL 481
++G + R+ SG + S V +N + + +I R + E +GDI
Sbjct: 329 FVGNLTFFRVYSGVVNSGDTV--LNSVKAA--RERFGRIVQMHANKREEIKEVRAGDIAA 384
Query: 482 ITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRL 541
G++++ G T+CDP P L + EP I+ V P K +
Sbjct: 385 AIGLKDVTTGDTLCDPDAPIILERMEFPEPV--ISIAV--EP--------------KTKA 426
Query: 542 DHEIKNNIGL----------RVTQNKHDDSIYE-----VSGRGELHLTILIENMRRE-GY 585
D E K + L RV ++ E ++G GELHL I+++ M+RE
Sbjct: 427 DQE-KMGLALGRLAKEDPSFRVWTDE------ESNQTIIAGMGELHLDIIVDRMKREFNV 479
Query: 586 ELSVSRPRVIFK 597
E +V +P+V ++
Sbjct: 480 EANVGKPQVAYR 491
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 103 bits (260), Expect = 4e-24
Identities = 47/313 (15%), Positives = 99/313 (31%), Gaps = 70/313 (22%)
Query: 204 IDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFS 263
+ + + N+AII G+T+L ++G +
Sbjct: 15 VPRGSHMANVAIIGTEKSGRTSLA------------------------ANLGKKGTSSDI 50
Query: 264 KNCSIEYNGTRINIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPMPQTRFV 317
+ + G + +D + + S++ D +L I +G T
Sbjct: 51 TMYNNDKEGRNMVFVDAHSYPKT------LKSLITALNISDIAVLCIPP-QGLDAHTGEC 103
Query: 318 TRKALKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 376
LGFK ++ + D + + L T Q D+ I +
Sbjct: 104 IIALDLLGFKHGIIALTRSDS--THMHAIDELKAKLKVITSGTVLQ-DWECISLNTNKSA 160
Query: 377 ANENSKARQGNMIPLFEAILKYVPV-HKDNSNNPLQLQI-----ISLEYSSYLGK--IGI 428
N + + + + + + + ++ P ++ I ++ GK + +
Sbjct: 161 KNPFEGVDE--LKARINEVAEKIEAENAELNSLPARIFIDHAFNVT-------GKGCVVL 211
Query: 429 GRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--LITGI- 485
G + G K I P D+ +I I+ V ++ A +G V + +
Sbjct: 212 GVVKQGISKDKDKTKIF--PLDR--DIEIRSIQSH----DVDIDSAPAGTRVGMRLKNVQ 263
Query: 486 -EEICIGSTICDP 497
++I G I D
Sbjct: 264 AKDIERGFIISDK 276
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit;
translation termination, peptide release, GTPase,
translatio; 2.35A {Schizosaccharomyces pombe} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Length = 467
Score = 104 bits (262), Expect = 8e-24
Identities = 75/326 (23%), Positives = 120/326 (36%), Gaps = 49/326 (15%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSG-----TFRKNQNINAR----------IMDSNEIEKE 256
NI I HVD GK+TL ++L +G T K + +DS E+E
Sbjct: 45 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 104
Query: 257 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG------- 309
+G T+ E R +++D PGH + + S D +L+I A G
Sbjct: 105 KGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFE 164
Query: 310 PMPQTRFVTRKALKLGFK-PIVVVNKIDR-----SNARPEWVVDATFDLFDKLCATEEQL 363
QTR A G +VV+NK+D S R + VD ++ +
Sbjct: 165 RGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKT 224
Query: 364 DFPVIYTSALHGYANENSKARQGNMIP------LFEAILKYVPVHKDNSNNPLQLQIISL 417
D + SA G N + P L E + + + N P + I S
Sbjct: 225 DVKYMPVSAYTG-QNVKDRVDSSVC-PWYQGPSLLEYLDSMTHLERK-VNAPFIMPIASK 281
Query: 418 EYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSG 477
Y LG I G+I +G IK +V++M P + ++ ++ ++ G
Sbjct: 282 -YKD-LGTILEGKIEAGSIKKNSNVLVM------PINQTL-EVTAIYDEADEEISSSICG 332
Query: 478 DIVLIT---GIEEICIGSTICDPSKP 500
D V + ++ G + P
Sbjct: 333 DQVRLRVRGDDSDVQTGYVLTSTKNP 358
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase,
alpha/beta structure, protein biosynthesis, translation;
HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Length = 435
Score = 104 bits (261), Expect = 8e-24
Identities = 84/336 (25%), Positives = 133/336 (39%), Gaps = 71/336 (21%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSG-----TFRKNQN----------INARIMDSNEIEKE 256
N+ +I HVDHGK+TL+ LL G T ++ + A ++D + E+E
Sbjct: 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 67
Query: 257 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEG- 309
RG+TI E IID PGH DF + +M+ D +L++ A +G
Sbjct: 68 RGVTINLTFMRFETKKYFFTIIDAPGHRDF------VKNMITGASQADAAILVVSAKKGE 121
Query: 310 ------PMPQTRFVTRKALKLGFK-PIVVVNKIDR-----SNARPEWVVDATFDLFDKLC 357
QTR A +G IV VNK+D R + +VD
Sbjct: 122 YEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYG 181
Query: 358 ATEEQLDF-PVIYTSALHGYANENSKARQGNMIP------LFEAILKYVPVHKDNSNNPL 410
++ F PV A G +N + NM L E + + K + PL
Sbjct: 182 FNTNKVRFVPV---VAPSG---DNITHKSENM-KWYNGPTLEEYLDQLELPPKP-VDKPL 233
Query: 411 QLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNK--AKINQIRVFKGLDR 468
++ I + S +G + +GR+ SG +K +V M P ++ I
Sbjct: 234 RIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFM------PAGKVGEVRSIE----THH 283
Query: 469 VLVNEALSGDIVLIT--GIE--EICIGSTICDPSKP 500
+++A GD + G+E +I G + P+ P
Sbjct: 284 TKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNP 319
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 98.7 bits (246), Expect = 1e-21
Identities = 72/344 (20%), Positives = 131/344 (38%), Gaps = 86/344 (25%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSG-----TFRKN----QNIN------ARIMDSNEIEKE 256
++ + HVD GK+T++ ++ + G + +K N A ++D+ E E+
Sbjct: 179 HLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERA 238
Query: 257 RGITI------FSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMV------DNVLLLI 304
RG+T+ F E + I D PGH DF I M+ D +L++
Sbjct: 239 RGVTMDVASTTF------ESDKKIYEIGDAPGHRDF------ISGMIAGASSADFAVLVV 286
Query: 305 DAVEGPM-------PQTRFVTRKALKLGFK-PIVVVNKIDR---SNARPEWVVDATFDLF 353
D+ + QTR LG +V VNK+D S R + + + D
Sbjct: 287 DSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFL 346
Query: 354 DKLCA-TEEQLDF-PVIYTSALHGYANENSKARQGNMI-------PLFEAILKYVPVHKD 404
K+ + F P+ SA+ G N + + + L A+ + VP K
Sbjct: 347 IKMVGFKTSNVHFVPI---SAISG---TNLIQKDSSDLYKWYKGPTLLSALDQLVPPEKP 400
Query: 405 NSNNPLQLQIISLEYSSYLGKIGI--GRILSGRIKSLQDVVIMNGPDDKPNK--AKINQI 460
PL+L I + Y S + GR+ +G ++ Q + + ++ A + +
Sbjct: 401 -YRKPLRLSIDDV-YRS--PRSVTVTGRVEAGNVQVNQVLYDV------SSQEDAYVKNV 450
Query: 461 RVFKGLDRVLVNEALSGDIVLIT----GIEEICIGSTICDPSKP 500
A++GD V + + ++ G + + P
Sbjct: 451 IRN---SDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYENP 491
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 98.6 bits (246), Expect = 2e-21
Identities = 65/344 (18%), Positives = 116/344 (33%), Gaps = 73/344 (21%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSG-----TFRKN----QNIN------ARIMDSNEIEKE 256
+ ++ HVD GK+TL+ LL RK + + A IMD E+E
Sbjct: 169 SFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERE 228
Query: 257 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEGP 310
RG+T+ + I+D PGH DF + + + D +L +D
Sbjct: 229 RGVTVSICTSHFSTHRANFTIVDAPGHRDF------VPNAIMGISQADMAILCVDCSTNA 282
Query: 311 M-------PQTRFVTRKALKLGFKP-IVVVNKIDR---SNARPEWVVDATFDLFDKLCAT 359
QT+ A LG I+ +NK+D S R E + +
Sbjct: 283 FESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFF 342
Query: 360 EEQLDF-PVIYTSALHGYANENSKARQGNMIP------LFEAI-----LKYVPVHKDNSN 407
E+ +++ P+ S G + L + N +
Sbjct: 343 EDNINWVPI---SGFSG-EGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKD 398
Query: 408 NPLQLQIISLEYSSYLGKIG---IGRILSGRIKSLQDVVIMNGPDDKPNK--AKINQIRV 462
+P ++ + S G++ SG I+ + + I P++ +++I+V
Sbjct: 399 DPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIY------PSEQSCIVDKIQV 452
Query: 463 FKGLDRVL----VNEALSGDIVLIT----GIEEICIGSTICDPS 498
+ + A+ GD V + E+I G
Sbjct: 453 GSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVD 496
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 96.2 bits (240), Expect = 4e-21
Identities = 76/326 (23%), Positives = 129/326 (39%), Gaps = 60/326 (18%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQ----------------NIN-ARIMDSNEIE 254
+VD GK+TLI LL S ++ +++ A ++D + E
Sbjct: 26 RFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAE 85
Query: 255 KERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQT 314
+E+GITI + I DTPGH + + S D ++L+DA G QT
Sbjct: 86 REQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT 145
Query: 315 R---FVTRKALKLGFKPIVV-VNKIDR---SNARPEWVVDATFDLFDKLCATEEQLDF-P 366
R ++ +L LG K IVV +NK+D E + + + + F P
Sbjct: 146 RRHSYIA--SL-LGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVP 202
Query: 367 VIYTSALHGYANENSKARQGNM-----IPLFEAILKYVPVHKDNSNNPLQLQI-----IS 416
+ SAL G +N + L E IL+ V + D + L+ + +
Sbjct: 203 M---SALKG---DNVVNKSERSPWYAGQSLME-ILETVEIASDRNYTDLRFPVQYVNRPN 255
Query: 417 LEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALS 476
L + + G + SG + ++V++ P K +++ I F+G + +A
Sbjct: 256 LNFRGFA-----GTLASGIVHKGDEIVVL--PSGK--SSRVKSIVTFEG----ELEQAGP 302
Query: 477 GDIVLITGIEEICI--GSTICDPSKP 500
G V +T +EI I G +
Sbjct: 303 GQAVTLTMEDEIDISRGDLLVHADNV 328
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 96.5 bits (241), Expect = 4e-21
Identities = 66/350 (18%), Positives = 117/350 (33%), Gaps = 85/350 (24%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSG-----TFRKN----QNIN------ARIMDSNEIEKE 256
+ ++ HVD GK+TL+ LL RK + + A IMD E+E
Sbjct: 35 SFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERE 94
Query: 257 RGITI------FSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMV------DNVLLLI 304
RG+T+ F + I+D PGH DF + + + D +L +
Sbjct: 95 RGVTVSICTSHF------STHRANFTIVDAPGHRDF------VPNAIMGISQADMAILCV 142
Query: 305 DAVEGPM-------PQTRFVTRKALKLGFKP-IVVVNKIDR---SNARPEWVVDATFDLF 353
D QT+ A LG I+ +NK+D S R E +
Sbjct: 143 DCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYL 202
Query: 354 DKLCATEEQLDF-PVIYTSALHGYANENSKARQGNMIP------LFEAI-----LKYVPV 401
+ E+ +++ P+ S G + L +
Sbjct: 203 VDIGFFEDNINWVPI---SGFSG-EGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKEN 258
Query: 402 HKDNSNNPLQLQIISLEYSSYLGKIG---IGRILSGRIKSLQDVVIMNGPDDKPNK--AK 456
N ++P ++ + S G++ SG I+ + + I P++
Sbjct: 259 EGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIY------PSEQSCI 312
Query: 457 INQIRVFKGLDRVL----VNEALSGDIVLIT----GIEEICIGSTICDPS 498
+++I+V + + A+ GD V + E+I G
Sbjct: 313 VDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVD 362
>1f60_A Elongation factor EEF1A; protein-protein complex, translation;
1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1
c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Length = 458
Score = 94.7 bits (236), Expect = 1e-20
Identities = 81/345 (23%), Positives = 127/345 (36%), Gaps = 79/345 (22%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKE 256
N+ +I HVD GK+T HL+ + G K A ++D + E+E
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 68
Query: 257 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG------- 309
RGITI E ++ +ID PGH DF + S D +L+I G
Sbjct: 69 RGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGIS 128
Query: 310 PMPQTRFVTRKALKLGFKP-IVVVNKIDR---SNARPEWVVDATFDLFDKLCATEEQLDF 365
QTR A LG + IV VNK+D +R + +V T + K+ + + F
Sbjct: 129 KDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPF 188
Query: 366 -PVIYTSALHGYANENSKARQGNM-----------------IPLFEAILKYVPVHKDNSN 407
P+ S +G +N N L EAI + ++
Sbjct: 189 VPI---SGWNG---DNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRP-TD 241
Query: 408 NPLQLQIISLEYSSYLGKIG------IGRILSGRIKSLQDVVIMNGPDDKPNK--AKINQ 459
PL+L + + Y KIG +GR+ +G IK V P ++
Sbjct: 242 KPLRLPLQDV-Y-----KIGGIGTVPVGRVETGVIKPGMVVTFA------PAGVTTEVKS 289
Query: 460 IRVFKGLDRVLVNEALSGDIVLIT----GIEEICIGSTICDPSKP 500
+ + + + + GD V ++EI G+ D
Sbjct: 290 VE----MHHEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKND 330
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger,
initiate translation, tRNA binding, mRNA bindin binding;
HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB:
3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A*
3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Length = 403
Score = 93.1 bits (232), Expect = 2e-20
Identities = 78/366 (21%), Positives = 133/366 (36%), Gaps = 90/366 (24%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSG--TFRKNQNINARI----MDSNEIEKERGITIFSKN 265
NI ++ HVDHGKTTL+ + +G T +K I + S
Sbjct: 10 NIGVVGHVDHGKTTLVQAI---TGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCG 66
Query: 266 CSIEYNGTR-INIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEG-PMPQTRFV 317
E R I+ ID PGH + +M+ D +L++ A E P PQTR
Sbjct: 67 SDDEPKFLRRISFIDAPGHEVL------MATMLSGAALMDGAILVVAANEPFPQPQTREH 120
Query: 318 TRKALKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQL----------DFP 366
+G K +++V NK+D VV ++ + Q+ + P
Sbjct: 121 FVALGIIGVKNLIIVQNKVD--------VVSK-----EEALSQYRQIKQFTKGTWAENVP 167
Query: 367 VIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQII--------SLE 418
+I SALH N+ L E I +Y+ + + + +I +
Sbjct: 168 IIPVSALHKI----------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQ 217
Query: 419 YSSYLGKIGIGRILSGRIKSLQDVVIMNGPDD--------KPNKAKINQIRVFKGLDRVL 470
++ G + G I+ G K Q++ ++ G +P KI+ IR
Sbjct: 218 FNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDE----E 273
Query: 471 VNEALSGDIVLI-TGI------EEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSP 523
EA G +V I T + + +GS I + + + + I + +
Sbjct: 274 FKEAKPGGLVAIGTYLDPSLTKADNLLGSIIT---LADAEVPVLWN---IRIKYNLLERV 327
Query: 524 LAGREG 529
+ +E
Sbjct: 328 VGAKEM 333
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 87.7 bits (218), Expect = 2e-18
Identities = 78/357 (21%), Positives = 122/357 (34%), Gaps = 113/357 (31%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITI---------- 261
NI ++ HVDHGKT+L L +G S E RGI+I
Sbjct: 10 NIGMVGHVDHGKTSLTKAL---TGV----WTDRH----SE--ELRRGISIRLGYADCEIR 56
Query: 262 ------------FSKNCSIEYNGTR-INIIDTPGHADFGGEVERILSMV------DNVLL 302
NC E R ++ +D+PGH + +M+ D +L
Sbjct: 57 KCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETL------MATMLSGASLMDGAIL 110
Query: 303 LIDAVEG-PMPQTRFVTRKALKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATE 360
+I A E P PQT+ LG I++V NKID +VD +
Sbjct: 111 VIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKID--------LVDE-----KQAEENY 157
Query: 361 EQL----------DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPL 410
EQ+ + P+I SA H N+ L +AI ++P K + +
Sbjct: 158 EQIKEFVKGTIAENAPIIPISAHHEA----------NIDVLLKAIQDFIPTPKRDPDATP 207
Query: 411 QLQIISL--------EYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDK--------PNK 454
++ + E G + G I+ G K ++ I G P
Sbjct: 208 RMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLT 267
Query: 455 AKINQIRVFKGLDRVLVNEALSGDIV-----LITGI--EEICIGSTICDPSKPNGLP 504
KI + ++ +A G ++ L + + GS + P LP
Sbjct: 268 TKIVSLAAG----NTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVG---LPGTLP 317
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 86.5 bits (215), Expect = 4e-18
Identities = 88/319 (27%), Positives = 140/319 (43%), Gaps = 67/319 (21%)
Query: 212 NIAIIAHVDHGKTTL---IDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFS 263
N+ I HVDHGKTTL I +L + G A+ EI E+ RGITI
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILAEGG--------GAKFKKYEEIDNAPEERARGITI-- 54
Query: 264 KNCS-IEYN-GTR-INIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPMPQT 314
N + +EY+ R D PGHAD+ + +M+ D +L++ A +GPMPQT
Sbjct: 55 -NAAHVEYSTAARHYAHTDCPGHADY------VKNMITGTAPLDGCILVVAANDGPMPQT 107
Query: 315 RFVTRKALKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATE--EQL-------- 363
R A ++G + +VV VNK D V D+ ++ + L E E L
Sbjct: 108 REHLLLARQIGVEHVVVYVNKADA-------VQDS--EMVE-LVELEIRELLTEFGYKGE 157
Query: 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYL 423
+ P+I SAL + + ++ L +A+ Y+PV + P L + S+
Sbjct: 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGR 217
Query: 424 GKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVF-KGLDRVLVNEALSGDIV-- 480
G + G + G +K + + + + + I +F K LD A +GD +
Sbjct: 218 GTVVTGTLERGILKKGDECEFLGHSKNI--RTVVTGIEMFHKSLD-----RAEAGDNLGA 270
Query: 481 LITGI--EEICIGSTICDP 497
L+ G+ E++ G + P
Sbjct: 271 LVRGLKREDLRRGLVMAKP 289
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 86.5 bits (214), Expect = 2e-17
Identities = 96/324 (29%), Positives = 142/324 (43%), Gaps = 79/324 (24%)
Query: 212 NIAIIAHVDHGKTTL---IDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFS 263
N+ I HVDHGKTTL I +L ++ ++I EK RGITI
Sbjct: 298 NVGTIGHVDHGKTTLTAAITTVLAKTY--------GGAARAFDQIDNAPEEKARGITI-- 347
Query: 264 KNCS-IEYN-GTR-INIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPMPQT 314
N S +EY+ TR +D PGHAD+ + +M+ D +L++ A +GPMPQT
Sbjct: 348 -NTSHVEYDTPTRHYAHVDCPGHADY------VKNMITGAAQMDGAILVVAATDGPMPQT 400
Query: 315 RFVTRKALKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATE--EQL-------- 363
R ++G I+V +NK D V D +L + L E E L
Sbjct: 401 REHILLGRQVGVPYIIVFLNKCDM-------VDDE--ELLE-LVEMEVRELLSQYDFPGD 450
Query: 364 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQI-----ISLE 418
D P++ SAL A E + ++ L + Y+P + + P L I IS
Sbjct: 451 DTPIVRGSALK--ALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGR 508
Query: 419 YSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVF-KGLDRVLVNEALSG 477
G + GR+ G IK ++V I+ + + K+ + +F K LD E +G
Sbjct: 509 -----GTVVTGRVERGIIKVGEEVEIVGIKETQ--KSTCTGVEMFRKLLD-----EGRAG 556
Query: 478 DIV--LITGI--EEICIGSTICDP 497
+ V L+ GI EEI G + P
Sbjct: 557 ENVGVLLRGIKREEIERGQVLAKP 580
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Length = 410
Score = 84.2 bits (209), Expect = 2e-17
Identities = 83/357 (23%), Positives = 129/357 (36%), Gaps = 113/357 (31%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITI---------- 261
NI ++ HVDHGKTTL L +G S E RGITI
Sbjct: 12 NIGMVGHVDHGKTTLTKAL---TGV----WTDTH----SE--ELRRGITIKIGFADAEIR 58
Query: 262 ------------FSKNCSIEYNGTR-INIIDTPGHADFGGEVERILSMV------DNVLL 302
C E R ++ ID PGH + +M+ D +L
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEAL------MTTMLAGASLMDGAIL 112
Query: 303 LIDAVEG-PMPQTRFVTRKALKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATE 360
+I A E P PQTR +G K I++ NKI+ +VD +K
Sbjct: 113 VIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIE--------LVDK-----EKALENY 159
Query: 361 EQL----------DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPL 410
Q+ + P+I SALHG N+ L +AI ++P K + N P
Sbjct: 160 RQIKEFIEGTVAENAPIIPISALHGA----------NIDVLVKAIEDFIPTPKRDPNKPP 209
Query: 411 QLQIISL--------EYSSYLGKIGIGRILSGRIKSLQDVVI--------MNGPDDKPNK 454
++ ++ +G + G I+ G++K ++ I +P
Sbjct: 210 KMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPIT 269
Query: 455 AKINQIRVFKGLDRVLVNEALSGDIV-LITGI------EEICIGSTICDPSKPNGLP 504
+I ++ V EA G +V + T + ++ G+ + KP LP
Sbjct: 270 TEIVSLQAG----GQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVG---KPGKLP 319
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 81.5 bits (202), Expect = 2e-16
Identities = 92/332 (27%), Positives = 142/332 (42%), Gaps = 83/332 (25%)
Query: 212 NIAIIAHVDHGKTTL---IDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFS 263
N+ I HVDHGKTTL + ++ N + D +I E+ RGITI
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENP-------NVEVKDYGDIDKAPEERARGITI-- 63
Query: 264 KNCS-IEYN-GTR-INIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPMPQT 314
N + +EY R + +D PGHAD+ I +M+ D +L++ A +GPMPQT
Sbjct: 64 -NTAHVEYETAKRHYSHVDCPGHADY------IKNMITGAAQMDGAILVVSAADGPMPQT 116
Query: 315 RFVTRKALKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATE--EQL-------- 363
R A ++G IVV +NK+D V D +L D L E + L
Sbjct: 117 REHILLARQVGVPYIVVFMNKVDM-------VDDP--ELLD-LVEMEVRDLLNQYEFPGD 166
Query: 364 DFPVIYTSALHGYANENSKARQGNMIP--------LFEAILKYVPVHKDNSNNPLQLQI- 414
+ PVI SAL + + L +AI +Y+P + + P + +
Sbjct: 167 EVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVE 226
Query: 415 ----ISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVF-KGLDRV 469
I+ G + GRI G++K +V I+ G + K + + + K L
Sbjct: 227 DVFTITGR-----GTVATGRIERGKVKVGDEVEIV-GLAPETRKTVVTGVEMHRKTLQ-- 278
Query: 470 LVNEALSGDIV--LITGI--EEICIGSTICDP 497
E ++GD V L+ G+ EE+ G + P
Sbjct: 279 ---EGIAGDNVGVLLRGVSREEVERGQVLAKP 307
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 76.2 bits (188), Expect = 3e-16
Identities = 45/134 (33%), Positives = 61/134 (45%), Gaps = 18/134 (13%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERG-ITIFSKNCSIEYN 271
+ I+ HVDHGKTTL+D I S E+E G IT + N
Sbjct: 11 VTIMGHVDHGKTTLLD-----------------AIRHSKVTEQEAGGITQHIGAYQVTVN 53
Query: 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 331
+I +DTPGH F R + D V+L++ A +G MPQT A IV
Sbjct: 54 DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVA 113
Query: 332 VNKIDRSNARPEWV 345
+NK+D+ A P+ V
Sbjct: 114 INKMDKPEANPDRV 127
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 70.3 bits (173), Expect = 1e-12
Identities = 45/140 (32%), Positives = 62/140 (44%), Gaps = 39/140 (27%)
Query: 218 HVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERG-IT--I--FSKNCSIEYNG 272
HVDHGKTTL+D L RK + E G IT I F + +G
Sbjct: 12 HVDHGKTTLLDKL-------RK----------TQVAAMEAGGITQHIGAFLVSLP---SG 51
Query: 273 TRINIIDTPGHADFGGEVERILSM-------VDNVLLLIDAVEGPMPQTRFVTRKALKLG 325
+I +DTPGHA F +M D V+L++ A +G M QT + A
Sbjct: 52 EKITFLDTPGHAAF-------SAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAH 104
Query: 326 FKPIVVVNKIDRSNARPEWV 345
++ +NK D++ A PE V
Sbjct: 105 VPIVLAINKCDKAEADPEKV 124
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 70.4 bits (173), Expect = 1e-12
Identities = 51/144 (35%), Positives = 71/144 (49%), Gaps = 36/144 (25%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQSG---------TFRKNQNINARIMDSNEIEKERGITIFS 263
++++ HVDHGKTTL+DH +R S T Q+I A + + IE G F
Sbjct: 8 VSVLGHVDHGKTTLLDH-IRGSAVASREAGGIT----QHIGATEIPMDVIEGICG--DFL 60
Query: 264 KNCSIEYNGTRINIIDTPGHADF------GGEVERILSMVDNVLLLIDAVEGPMPQTRFV 317
K SI + IDTPGH F GG ++ D +L++D EG PQ
Sbjct: 61 KKFSIRETLPGLFFIDTPGHEAFTTLRKRGG------ALADLAILIVDINEGFKPQ---- 110
Query: 318 TRKALKL--GFK-PIVV-VNKIDR 337
T++AL + ++ P VV NKIDR
Sbjct: 111 TQEALNILRMYRTPFVVAANKIDR 134
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.0 bits (165), Expect = 9e-12
Identities = 100/674 (14%), Positives = 199/674 (29%), Gaps = 180/674 (26%)
Query: 179 IRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFR 238
+ V + C + I + K +D +I + G L LL
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSI-LSKEEID-HIIMSKDAVSGTLRLFWTLLS------ 73
Query: 239 KNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD-FGGEVERILSMV 297
K + + + ++ + N + + + + +R+ +
Sbjct: 74 KQEEMVQKFVE----------EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-- 121
Query: 298 DNVLLLIDAVEGPMPQTRFVTRKAL-KLGFKPIVVVN------KIDRSNARPEWVVDATF 350
DN + V Q R+AL +L V+++ K WV
Sbjct: 122 DNQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLIDGVLGSGK--------TWVALDV- 170
Query: 351 DLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK-----YVPVHKDN 405
+ ++DF + + + N NS E +L+ + +
Sbjct: 171 -CLSY--KVQCKMDFKIFWLN----LKNCNSP----------ETVLEMLQKLLYQIDPNW 213
Query: 406 SNNPLQLQIISLEYSSYLGKIGIGRILSGRI--KSLQDVVIMNGPDDKPNKAKINQIRVF 463
++ I L S + + R+L + L +++ + + + +
Sbjct: 214 TSRSDHSSNIKLRIHS--IQAELRRLLKSKPYENCL---LVL---LN------VQNAKAW 259
Query: 464 KGLD---RVL-------VNEALSGDIVLITGIEEICIGSTICDPSKPNGLPM----LNID 509
+ ++L V + LS ++ + T + L+
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-----PDEVKSLLLKYLDCR 314
Query: 510 EPTLTINFMVNNSPLA-GREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGR 568
L ++ +P + I R D+ V +K I E S
Sbjct: 315 PQDLPRE-VLTTNPRRLSIIAESI--RDGLATWDNW------KHVNCDKLTTII-ESS-- 362
Query: 569 GELHLTILIENMRREGYE-LSVSRPRV-I-FKTLNGELYEPYENLFVDIEEINQGIIMQK 625
L +L R+ ++ LSV P I L ++ D+ + + +++ K
Sbjct: 363 ----LNVLEPAEYRKMFDRLSVFPPSAHIPTILL--------SLIWFDVIKSDVMVVVNK 410
Query: 626 LNYRG---GDLKN--IEI------------NEKE---RVRLEYRIPSRGLIGFQNEFITL 665
L+ K I I NE + Y IP F ++ +
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK----TFDSDDLIP 466
Query: 666 TRGTGLI-SHV---------FEEYAPFYNKSKY-DLGKRRNGVLISQYSGKAVAYSLWKL 714
SH+ E F + + D + + A L L
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLF--RMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 715 QD--RGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLINIIK 772
Q + +I ND YE ++ I D L E+ L I S +D +++
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAI----LDFLPKI--EENL--ICSKYTD-------LLR 569
Query: 773 IILIYKYMNGDVAE 786
I L+ + + + E
Sbjct: 570 IALMAE--DEAIFE 581
Score = 59.1 bits (142), Expect = 5e-09
Identities = 93/663 (14%), Positives = 183/663 (27%), Gaps = 204/663 (30%)
Query: 67 LSEADKYYEAIIHLGITTETGDIEGK-IIDFNKNIPNSIEIIEKILINFHGKISQIPPMY 125
E Y+ I+ + + + K + D K+I + EI + I+++ +S ++
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI-DHIIMSKD-AVSGTLRLF 68
Query: 126 SALKYKGIPLYK----------Y------------ARSGITIKRKLRYI----KIYKIT- 158
L K + + Y S +T YI ++Y
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR----MYIEQRDRLYNDNQ 124
Query: 159 -IIDYTI----PYLTLRIHCSK---GTYIRVLSEDIGKMLGCGAH---LKYLRRIGIDKL 207
Y + PYL LR + + + G +LG G L
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLID----G-VLGSGKTWVALDVCL----SYK 175
Query: 208 TLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCS 267
K I ++ + +L Q + +I + + I
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEML------QKLLYQIDPNWTSRSDHSSNIKL---- 225
Query: 268 IEYNGTRINIIDTPGHADFGGEVERILSMVD--NVLLLIDAVEGPMPQTRFVTRKALKLG 325
RI+ I E+ R+L N LL++ V+ + A L
Sbjct: 226 ------RIHSIQA--------ELRRLLKSKPYENCLLVLLNVQNA----KAW--NAFNLS 265
Query: 326 FKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQ 385
K I++ + + D T LD + K+
Sbjct: 266 CK-ILLTTR-FKQVT----------DFLSAATTTHISLDHH------SMTLTPDEVKS-- 305
Query: 386 GNMIPLFEAILKYVPVHKDN------SNNPLQLQIIS---------LEYSSYLGKIGIGR 430
L LKY+ + + NP +L II+ + ++ +
Sbjct: 306 -----LL---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 431 ILSGRIKSL---------QDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL 481
I+ + L + + P A I + ++ + + D+++
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVF--PPS----AHI-PTILLS----LIWFDVIKSDVMV 406
Query: 482 ITGIEEICIGSTI-CDPSKPN-GLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKN 539
+ + ++ S + P + +P + ++ V + I
Sbjct: 407 V--VNKLHKYSLVEKQPKESTISIPSIYLE-------LKVKLENEYALHRSIVDHYNIPK 457
Query: 540 RLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTL 599
D + + D Y H+ G+ L
Sbjct: 458 TFDSD-------DLIPPYLDQYFYS-------HI----------GHHLK--------NIE 485
Query: 600 NGELYEPYENLFVDIEEINQGIIMQKLNYRG--------GDLKN----IEINEKERVRLE 647
+ E + +F+D + Q I + LK I N+ + RL
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
Query: 648 YRI 650
I
Sbjct: 546 NAI 548
Score = 45.2 bits (106), Expect = 8e-05
Identities = 60/439 (13%), Positives = 123/439 (28%), Gaps = 99/439 (22%)
Query: 38 KVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDF- 96
+ + + L L + N+ S +D I I+ ++
Sbjct: 188 NLKNCNSPETVLEMLQKLLY---QIDPNWTSRSDHSSN------IKLRIHSIQAELRRLL 238
Query: 97 -NKNIPNSIEII-----EKIL--INFHGKI------SQIPPMYSALKYKGIPLYKYARSG 142
+K N + ++ K N KI Q+ SA I L +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL-DHHSMT 297
Query: 143 ITIKRKLR-YIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCG-AHLKYLR 200
+T +K D +P L + R LS I + + G A +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQD--LPREVLTTN------PRRLSI-IAESIRDGLATWDNWK 348
Query: 201 RIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIM-----DSNEIEK 255
+ DKLT I + ++ + + + F + +I ++ D + +
Sbjct: 349 HVNCDKLT----TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 256 ERGITIFSKNCSIE--YNGTRINI----IDTPGHADFGGEVERILSMVDNVLLLIDAVEG 309
+ K +E + I+I ++ + + R ++D
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS---------IVDHYNI 455
Query: 310 PMPQTRFVTRKALKLGFKPIVV--------------VNKIDRSNARPEWVVDATFDLFDK 355
P + P + + +R +D F L K
Sbjct: 456 P--------KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF-LEQK 506
Query: 356 LCATEEQLDFPVIYTSALH------GYANENSKARQGNMIPLFEAILKYVP-----VHKD 404
+ + + L Y +N + L AIL ++P +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER----LVNAILDFLPKIEENLICS 562
Query: 405 NSNNPLQLQIISLEYSSYL 423
+ L++ + E +
Sbjct: 563 KYTDLLRI-ALMAEDEAIF 580
Score = 41.8 bits (97), Expect = 0.001
Identities = 47/298 (15%), Positives = 92/298 (30%), Gaps = 86/298 (28%)
Query: 539 NRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTIL----IENMRREGYELSVSRPRV 594
++ K+ + + + +V ++ +IL I+++ VS
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQ---DMPKSILSKEEIDHIIMSKDA--VSGTLR 66
Query: 595 IFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRG 654
+F TL + E + ++ IN +M ++ E R PS
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLM------------------SPIKTEQRQPSMM 108
Query: 655 LIGFQNEFITLTRGTGLISHVFEEY----APFYNKSKYDLGKRRNGVLISQY----SGKA 706
+ + L + VF +Y Y K + L + R + SGK
Sbjct: 109 TRMYIEQRDRLYND----NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 707 V----AYSLWKLQDR--GRLF-INHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNI--- 756
+K+Q + ++F +N + + +L + L +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLN----------LKNCNSPETVL------EMLQKLLYQ 208
Query: 757 -------RSSGSDEAIQLINIIK-----IILIYKYMNG-----DV--AEWLKA--LPC 793
RS S I+ I+ ++ Y N +V A+ A L C
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Score = 40.2 bits (93), Expect = 0.003
Identities = 18/132 (13%), Positives = 47/132 (35%), Gaps = 32/132 (24%)
Query: 16 YKPYGLSSNNALKKI----KYLLN----AKKVGYTGTLDPFATGLLPLCFGEATKFSNYL 67
+ + L + +++ L+ +K+ + T + +L + + Y+
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT-LQQLKFYKPYI 534
Query: 68 SEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSA 127
+ D YE ++ I+DF I E ++ + + + +I A
Sbjct: 535 CDNDPKYERLV------------NAILDFLPKIE------ENLICSKYTDLLRI-----A 571
Query: 128 LKYKGIPLYKYA 139
L + +++ A
Sbjct: 572 LMAEDEAIFEEA 583
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 66.8 bits (164), Expect = 1e-11
Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 36/141 (25%)
Query: 215 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKER-GIT--IFSKNCSIEYN 271
I+ HVDHGKT+L++++ R + E GIT I + + +E
Sbjct: 9 IMGHVDHGKTSLLEYI-------RS----------TKVASGEAGGITQHIGAYH--VETE 49
Query: 272 GTRINIIDTPGHADF------GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 325
I +DTPGHA F G + D V+L++ A +G MPQT + A K
Sbjct: 50 NGMITFLDTPGHAAFTSMRARGAQA------TDIVVLVVAADDGVMPQTIEAIQHA-KAA 102
Query: 326 FKPIVV-VNKIDRSNARPEWV 345
P+VV VNKID+ A P+ V
Sbjct: 103 QVPVVVAVNKIDKPEADPDRV 123
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10,
RNA modification, thump domai; HET: EPE; 2.0A {Homo
sapiens}
Length = 530
Score = 59.1 bits (142), Expect = 3e-09
Identities = 26/164 (15%), Positives = 43/164 (26%), Gaps = 41/164 (25%)
Query: 50 TGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEK 109
L + E K Y A+I N + IE
Sbjct: 391 RDLQLVTREAIGHMKEGEEEKTKTYSALIWT------------------NKAIQKKDIEF 432
Query: 110 ILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTL 169
+ KI Q P+ + R +R I+ + + L
Sbjct: 433 LNDIKDLKIDQKTPLRVLHR----------RP-----LAVRARVIHFMETQYVDEHHFRL 477
Query: 170 RIHCSKGTYIRVL--------SEDIGKMLGCGAHLKYLRRIGID 205
+ GTYI+ +IG ++ A + L +D
Sbjct: 478 HLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVD 521
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 56.2 bits (136), Expect = 2e-08
Identities = 37/197 (18%), Positives = 65/197 (32%), Gaps = 47/197 (23%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQ--SGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
I + + GK++ ++ L+ Q S + S E+ +T
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVT---------- 86
Query: 271 NGTRINIIDTPGHADFG--GE-----VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK 323
++DTPG D G G R+ D +L+ D+ P V +
Sbjct: 87 ------LVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYE--DDVVNLFKE 138
Query: 324 LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA 383
+ +VVVNKID + E + E + + V+ SAL
Sbjct: 139 MEIPFVVVVNKIDVLGEKAEELKG----------LYESRYEAKVLLVSALQKK------- 181
Query: 384 RQGNMIPLFEAILKYVP 400
+ + I + +P
Sbjct: 182 ---GFDDIGKTISEILP 195
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 52.4 bits (125), Expect = 4e-07
Identities = 41/275 (14%), Positives = 80/275 (29%), Gaps = 39/275 (14%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 271
N+A+ GK++ I+ L N+ A E+ ER N
Sbjct: 71 NVAVTGETGSGKSSFINTLRG-----IGNEEEGAAKTGVVEVTMERHPYKHP-------N 118
Query: 272 GTRINIIDTPGHADFGGEVERILSMVDN---VLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ D PG + L + +I + + + + +
Sbjct: 119 IPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEF 178
Query: 329 IVVVNKIDRSNARPEWVVDATFDLFDKLCAT---------EEQLDFPVIYTSALHGYANE 379
V K+D TFD L E + P I+ +
Sbjct: 179 YFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLS------- 231
Query: 380 NSKARQGNMIP-LFEAILKYVPVHKDNSNNPLQLQIISLE-----YSSYLGKIGIGRILS 433
+K P L + ++ +P++K N + L I+ +I + +
Sbjct: 232 -NKNVCHYDFPVLMDKLISDLPIYK-RHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAA 289
Query: 434 GRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDR 468
+ + + + D + K + R G+D
Sbjct: 290 DLVNIIPSLTFLLDSDLETLKKSMKFYRTVFGVDE 324
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 49.8 bits (120), Expect = 1e-06
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 29/137 (21%)
Query: 278 IDTPG-----HADFGGE-----VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK 327
+DTPG +D G ++ L D +L +IDA EG P+ + + +K K
Sbjct: 64 LDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNK 123
Query: 328 P-IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-PVIYTSALHGYANENSKARQ 385
P IVV+NKID+ L D++ ++ + ++ SAL G
Sbjct: 124 PVIVVINKIDKIGPA-----KNVLPLIDEI--HKKHPELTEIVPISALKGA--------- 167
Query: 386 GNMIPLFEAILKYVPVH 402
N+ L + ILKY+P
Sbjct: 168 -NLDELVKTILKYLPEG 183
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 2e-06
Identities = 67/394 (17%), Positives = 115/394 (29%), Gaps = 156/394 (39%)
Query: 7 SPVSV-VIPKYKPYGLSSNNALKKIKYLLNAKKVGYT-GTLDPFATGLL--------PLC 56
P+S +I G+ L Y++ AK +G+T G L + G +
Sbjct: 234 IPISCPLI------GVIQ---L--AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 57 FGEATKFSNYLSEADKYYEAIIHLGI------------------TTETGD--------IE 90
E + ++ K + +G+ + E + I
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 91 G-------KIID-FNKNIPNS--IEIIEKILINFHGKISQI---PPMYSALKYKGIPLYK 137
++ N ++P +EI L+N G + + PP +L + L K
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEI---SLVN--GAKNLVVSGPP--QSLYGLNLTLRK 395
Query: 138 Y-ARSGITI------KRKL----RYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDI 186
A SG+ +RKL R++ + P+ H + S+ I
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPV--------ASPF-----HSH---LLVPASDLI 439
Query: 187 GKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINAR 246
K L + + D I + G D LR +I+ R
Sbjct: 440 ---------NKDLVKNNVSFNAKDIQIPVY-DTFDGS----D--LRVLSG-----SISER 478
Query: 247 IMDSNEIEKERGITIFSKNC----SIEYNGTRINIIDTPGHADFG-GEVERILSMVDNVL 301
I+D I + ++ T I DFG G + +
Sbjct: 479 IVD----------CIIRLPVKWETTTQFKATHI--------LDFGPGGASGLGVLTHRN- 519
Query: 302 LLIDAVEGPMPQT--RFVTRKALK------LGFK 327
+G T R + L GFK
Sbjct: 520 -----KDG----TGVRVIVAGTLDINPDDDYGFK 544
Score = 38.9 bits (90), Expect = 0.007
Identities = 45/298 (15%), Positives = 85/298 (28%), Gaps = 104/298 (34%)
Query: 520 NNSPLAGREGKFITTRQIKNRLDHEIKNNIGLR----VTQNKHDDSIYEVSGRGELHLTI 575
S A + + NR D+ K+ G V N + +I+ G +
Sbjct: 1637 KTSKAA---------QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHF-GGEKGKRIRE 1686
Query: 576 LIENMRREGYELSVSRPRVIFKTLN------------GELYEPYEN-----------LFV 612
M E + IFK +N G L + F
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT-QFTQPALTLMEKAAFE 1745
Query: 613 DIEEINQGIIMQKLNYRG---GDLKNIEINEKERVRLEYRIPS-----RGLIGFQNEFIT 664
D++ +G+I + G G EY + ++ + +
Sbjct: 1746 DLKS--KGLIPADATFAGHSLG---------------EY---AALASLADVMSIE-SLVE 1784
Query: 665 LT--RGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLWKLQDRGRLFI 722
+ RG + +S Y + G + + +S +A+ Y + ++ R +
Sbjct: 1785 VVFYRGM-TMQVAVPRDE--LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV 1841
Query: 723 ---NHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGS----DEAIQLINIIKI 773
N+N E V ++G D ++N IK+
Sbjct: 1842 EIVNYN---VENQQY----------V------------AAGDLRALDTVTNVLNFIKL 1874
Score = 37.7 bits (87), Expect = 0.016
Identities = 81/444 (18%), Positives = 137/444 (30%), Gaps = 156/444 (35%)
Query: 406 SNNPLQLQIISLEYS------SYLGKIGIGRILSGR-IKSLQDVVIMNGPDDKPNKAKIN 458
S PL L SLE+ S+ I L + K L + DD+P
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFF----IASQLQEQFNKILPEPTEGFAADDEP-TTPAE 59
Query: 459 QIRVFKGL--DRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTIN 516
+ F G V ++ D VL + E
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE-------------------------FENC 94
Query: 517 FMVNNSP--LAGREGKFITTRQIKNRLDHEIKN-----NIGLRVTQNKHDDSIYEVSGRG 569
++ N LA + + T +K + IKN + R K + +++ G G
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTK--ELIKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 570 ELHLTILI-----ENMRREGY--ELSVSRPRVIFKTLNGELYEPYENLFVDI-------- 614
L + I + Y EL +LY+ Y L D+
Sbjct: 153 NAQL-VAIFGGQGNT---DDYFEELR-------------DLYQTYHVLVGDLIKFSAETL 195
Query: 615 -EEINQGIIMQKLNYRGGDLKN-IEINEKERVRLEY--RIP-SRGLIG-FQ--------- 659
E I + +K+ +G ++ +E N +Y IP S LIG Q
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLE-NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 660 ------NEFITLTRGT-----GLISHVF----EEYAPFYNKSKYDL------GKRRNGVL 698
E + +G GL++ V + + F+ + + G R
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR----- 309
Query: 699 ISQ--YSGKAVAYSLWKLQDRGRLFINHNDLVYEG----MIIGIHSRDNDLLVNPIKEKQ 752
Y ++ S+ L+D + +N EG M L ++ + ++Q
Sbjct: 310 -CYEAYPNTSLPPSI--LED----SLENN----EGVPSPM----------LSISNLTQEQ 348
Query: 753 L------TNIRSSGSDE-AIQLIN 769
+ TN + I L+N
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVN 372
Score = 37.7 bits (87), Expect = 0.018
Identities = 84/515 (16%), Positives = 158/515 (30%), Gaps = 171/515 (33%)
Query: 166 YLTLRIHCSK-GTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKT 224
Y++ + SK G + +VL + YL +I H
Sbjct: 67 YVSSLVEPSKVGQFDQVL-----NLCLTEFENCYLE---------GNDI-------H--- 102
Query: 225 TLIDHLLRQS-GTFRKNQNI-----NARIMDSNEIEKERGITIFSKNCSIEYNGTRINII 278
L LL+++ T K + + ARIM +K+ +F ++ ++
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR---AVGEGNAQL--- 156
Query: 279 DTPGHADFGG----EV---E-RIL-----SMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 325
A FGG + E R L +V +++ + +T K G
Sbjct: 157 ----VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 326 FKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIY-TSALHGYANENSKAR 384
++ ++ + P D + L + + P+I H
Sbjct: 213 LN---ILEWLENPSNTP----DKDY-----LLSIP--ISCPLIGVIQLAH---------- 248
Query: 385 QGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVV- 443
YV K P +L+ L G Q +V
Sbjct: 249 -------------YVVTAKLLGFTPGELR----------------SYLKGATGHSQGLVT 279
Query: 444 --IMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIE------EICIGSTIC 495
+ D + F V V +A++ ++ G+ + +I
Sbjct: 280 AVAIAETDSWES---------F----FVSVRKAIT--VLFFIGVRCYEAYPNTSLPPSIL 324
Query: 496 DPSKPNGL----PMLNI-DEPTLTINFMVN--NSPLAGREGKFITTRQIKNRLDHEIKNN 548
+ S N PML+I + + VN NS L +Q+
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG-------KQV----------E 367
Query: 549 IGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIF--KTLNGEL--- 603
I L N + + VSG + L L +R+ + + R+ F + L
Sbjct: 368 ISLV---NGAKNLV--VSGPPQ-SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Query: 604 --YEPY-ENLFVD-IEEINQGIIMQKLNYRGGDLK 634
P+ +L V + IN+ ++ +++ D++
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Score = 31.2 bits (70), Expect = 1.8
Identities = 25/186 (13%), Positives = 56/186 (30%), Gaps = 82/186 (44%)
Query: 4 PSISPVSV----------VIPKYKPY-GLS----SNNALKKIKYLLNAKKVGYTGTLDPF 48
P+++ + +IP + G S + AL +
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA--AL-----------ASLADVM-SI 1779
Query: 49 ATGLLPLCF--GEATKF---------SNY-----------LSEADKYYEAIIHLGITTET 86
+ L+ + F G + SNY S + + + ++ + T
Sbjct: 1780 ES-LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE-RVGKRT 1837
Query: 87 GDI-EGKIIDFNKNIPNS----------IEIIEKILINFHGKISQIPPMYSALKYKGIPL 135
G + E I+ N N+ N ++ + +L + +K + I +
Sbjct: 1838 GWLVE--IV--NYNVENQQYVAAGDLRALDTVTNVL--------------NFIKLQKIDI 1879
Query: 136 YKYARS 141
+ +S
Sbjct: 1880 IELQKS 1885
Score = 29.2 bits (65), Expect = 6.3
Identities = 22/111 (19%), Positives = 33/111 (29%), Gaps = 28/111 (25%)
Query: 700 SQ--------YSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDN--DLLVNP-- 747
SQ Y A +W D H Y I+ I +N +L ++
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADN------HFKDTYGFSILDI-VINNPVNLTIHFGG 1678
Query: 748 -----IKEKQLTNIRSSGSDEAIQLINIIKII--LIYKYM-NGDVAEWLKA 790
I+E I + D ++ I K I Y + L A
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE-KGLLSA 1728
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 48.6 bits (117), Expect = 4e-06
Identities = 42/193 (21%), Positives = 68/193 (35%), Gaps = 52/193 (26%)
Query: 222 GKTTLIDHLLRQ--SGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINII- 278
GK+TL++ LL Q S T RK Q RI+ GI + I
Sbjct: 20 GKSTLLNKLLGQKISITSRKAQTTRHRIV---------GI----------HTEGAYQAIY 60
Query: 279 -DTPG-HADFGGE--------VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
DTPG H + + V+ V+ +++ P V K +
Sbjct: 61 VDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT-PDDEMVLNKLREGKAPV 119
Query: 329 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-PVIYTSALHGYANENSKARQGN 387
I+ VNK+D + + L L Q++F ++ SA G N
Sbjct: 120 ILAVNKVDNVQEKAD--------LLPHLQFLASQMNFLDIVPISAETGL----------N 161
Query: 388 MIPLFEAILKYVP 400
+ + + K++P
Sbjct: 162 VDTIAAIVRKHLP 174
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 48.7 bits (117), Expect = 5e-06
Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 21/119 (17%)
Query: 267 SIEYNGTRINIIDTPGHADFGGEVERI--------LSMVDNVLLLIDAVEGPMPQTRFVT 318
++ T + DT G + G E+E ++ D +L L+D +
Sbjct: 275 CFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEI 334
Query: 319 RKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHG 375
R+ K + V NK+DR+ + + VI SAL+G
Sbjct: 335 RELKAAHPAAKFLTVANKLDRAANADALIRAI-----------ADGTGTEVIGISALNG 382
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 46.3 bits (111), Expect = 2e-05
Identities = 45/194 (23%), Positives = 67/194 (34%), Gaps = 55/194 (28%)
Query: 222 GKTTLIDHLLRQ--SGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINII- 278
GK+TL+++LL + + Q R+ RGI R I+
Sbjct: 19 GKSTLLNNLLGVKVAPISPRPQTTRKRL---------RGI----------LTEGRRQIVF 59
Query: 279 -DTPG---HADFGGE-----VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP- 328
DTPG D GE V L+ V+ V+ ++D P P+ V R L K
Sbjct: 60 VDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP 119
Query: 329 -IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-PVIYTSALHGYANENSKARQG 386
++V NK+D + E + A E L SAL
Sbjct: 120 ILLVGNKLDAAKYPEE-----------AMKAYHELLPEAEPRMLSALDER---------- 158
Query: 387 NMIPLFEAILKYVP 400
+ L +L +P
Sbjct: 159 QVAELKADLLALMP 172
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 43.7 bits (104), Expect = 5e-05
Identities = 26/120 (21%), Positives = 38/120 (31%), Gaps = 26/120 (21%)
Query: 267 SIEYNGTRINIIDTPGHADFGGEVERI--------LSMVDNVLLLIDAVEGPMPQTRFVT 318
I +G ++IIDT G + EVERI + D VL ++D +
Sbjct: 46 HIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIW 105
Query: 319 RKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHG 375
+ + VV NK D + E +I SA G
Sbjct: 106 PEFIARLPAKLPITVVRNKADITGETLG---------------MSEVNGHALIRLSARTG 150
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 45.5 bits (109), Expect = 5e-05
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 18/121 (14%)
Query: 268 IEYNGTRINIIDTPG-----HADFGGE---VERILSMVDN---VLLLIDAVEGPMPQTRF 316
YN I+DT G E V R L +D V +++D EG + Q +
Sbjct: 218 FTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKR 277
Query: 317 VTRKALKLGFKPIV-VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-PVIYTSALH 374
+ A + G K +V VVNK D + + + ++ D + LD+ P+++ SAL
Sbjct: 278 IAGYAHEAG-KAVVIVVNKWDAVDKDESTMKEFEENIRDHF----QFLDYAPILFMSALT 332
Query: 375 G 375
Sbjct: 333 K 333
Score = 39.4 bits (93), Expect = 0.004
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 16/87 (18%)
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMV-----------DNVLLLIDAVEGPMPQTRFV 317
E+ N+IDT G E L+ + D ++ +++ EG V
Sbjct: 47 EWLNYDFNLIDTGG---IDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEV 103
Query: 318 TRKALKLGFKP-IVVVNKIDRSNARPE 343
+ + KP ++ VNK+D + R
Sbjct: 104 AKILYRTK-KPVVLAVNKLDNTEMRAN 129
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 44.5 bits (106), Expect = 1e-04
Identities = 30/153 (19%), Positives = 53/153 (34%), Gaps = 32/153 (20%)
Query: 267 SIEYNGTRINIIDTPG-HADFGGEVERI--------LSMVDNVLLLIDAVEGPMPQTRFV 317
I G I+DT G ++ VER+ + D VL ++DA + R +
Sbjct: 285 EIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKI 344
Query: 318 TRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYA 377
+ +VV+NK+D E + + D ++ SAL G
Sbjct: 345 --LERIKNKRYLVVINKVDVVEKINE-----------EEIKNKLGTDRHMVKISALKGE- 390
Query: 378 NENSKARQGNMIPLFEAILKYVPVHKDNSNNPL 410
+ L E+I + + ++ L
Sbjct: 391 ---------GLEKLEESIYRETQEIFERGSDSL 414
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 42.7 bits (101), Expect = 1e-04
Identities = 31/159 (19%), Positives = 51/159 (32%), Gaps = 40/159 (25%)
Query: 268 IEYNGTRINIIDTPG-----------HADFGGEVERILS----MVDNVLLLIDAVEGPMP 312
IE IID PG E+ + +D +L++D P
Sbjct: 39 IEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEI 98
Query: 313 QTRFVTRKALKL-----------GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 361
R+ R + + IV VNK+D+ + V++ L +K
Sbjct: 99 IKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIK-NVQEVINF---LAEKFEVPLS 154
Query: 362 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400
++D I SA G N+ L I + +
Sbjct: 155 EIDKVFIPISAKFGD----------NIERLKNRIFEVIR 183
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 43.6 bits (104), Expect = 2e-04
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 23/124 (18%)
Query: 268 IEYNGTRINIIDTPG------HADFGGE---VERILSMVDN---VLLLIDAVEGPMPQTR 315
+ +G + +DT G E R++ ++ V++++DA +G Q +
Sbjct: 223 VFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ 282
Query: 316 FVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF----PVIYTS 371
+ + G +VV NK D R + +D F K E+L F P+I+TS
Sbjct: 283 RMAGLMERRGRASVVVFNKWDLVVHR-----EKRYDEFTK--LFREKLYFIDYSPLIFTS 335
Query: 372 ALHG 375
A G
Sbjct: 336 ADKG 339
Score = 37.1 bits (87), Expect = 0.023
Identities = 27/144 (18%), Positives = 45/144 (31%), Gaps = 35/144 (24%)
Query: 269 EYNGTRINIIDTPGHADFGGE----------VERILSMVDNVLLLIDAVEGPMPQTRFVT 318
E+ G ++DT G + ++ D VL ++D G + +
Sbjct: 45 EWYGKTFKLVDTCGV-FDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLA 103
Query: 319 RKALKLGFKP-IVVVNKIDRSNARPEWVVDATFDL-FDKLCATEEQLDFPVIYTSALHGY 376
K I+V NK + V + L F + PV SA H
Sbjct: 104 DFLRKST-VDTILVANKAENLREFEREVKPELYSLGFGEP--------IPV---SAEHNI 151
Query: 377 ANENSKARQGNMIPLFEAILKYVP 400
N+ + E I+K +
Sbjct: 152 ----------NLDTMLETIIKKLE 165
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 43.6 bits (102), Expect = 2e-04
Identities = 41/211 (19%), Positives = 62/211 (29%), Gaps = 45/211 (21%)
Query: 222 GKTTLIDHLLRQ--------------------SGTFRKNQNINARIMDSN---EIEKERG 258
GKT+ I +LL Q G NA ++D G
Sbjct: 77 GKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFG 136
Query: 259 ITIFSKNCSIEYNGTR---INIIDTPGH-----------ADFGGEVERILSMVDNVLLLI 304
T ++ + I+IIDTPG DF + VD ++LL
Sbjct: 137 NTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLF 196
Query: 305 DAVEGPMPQ-TRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 363
DA + + K VV+NK D + ++ L L
Sbjct: 197 DAHKLEISDEFSEAIGALRGHEDKIRVVLNKADM--VETQQLMRVYGALMWALGKVVGTP 254
Query: 364 DFPVIYTSALHGYANENSKARQGNMIPLFEA 394
+ +Y + R+ LFE
Sbjct: 255 EVLRVYIGSFWSQPLLVPDNRR-----LFEL 280
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 42.1 bits (100), Expect = 5e-04
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 22/117 (18%)
Query: 267 SIEYNGTRINIIDTPGHADFGGEVERI--------LSMVDNVLLLIDAVEGPMPQTRFVT 318
+ G + ++DT G + +VE+I + D VLL IDA G + +
Sbjct: 266 QLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEI- 324
Query: 319 RKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHG 375
+ +K I+V+NKID + ++ + +++T+A
Sbjct: 325 YEQVK-HRPLILVMNKIDLVEKQLITSLEYPEN------------ITQIVHTAAAQK 368
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 39.4 bits (92), Expect = 0.002
Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 17/122 (13%)
Query: 268 IEYNGTRINIIDTPG---HADFG-GEVERI----LSMVDNVLL-LIDAVE--GPMPQTRF 316
++ + IIDTPG A +E L+ ++ V+L +ID E G + +
Sbjct: 71 FDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQI 130
Query: 317 VTRKALKLGF--KP-IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSAL 373
++K F K ++ NKID + L K + S L
Sbjct: 131 NLFYSIKSVFSNKSIVIGFNKID---KCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTL 187
Query: 374 HG 375
G
Sbjct: 188 TG 189
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 38.2 bits (90), Expect = 0.003
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 9/83 (10%)
Query: 269 EYNGTRINIIDTPGHAD---FGGE----VERILSMVDNVLLLIDAVEGPMPQTRFVTRKA 321
E + R ++DT G + + V+R L + VL +D V
Sbjct: 45 ETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYL 104
Query: 322 LKLGFKP-IVVVNKIDRSNARPE 343
+ G KP I+V K+D
Sbjct: 105 RRKG-KPVILVATKVDDPKHELY 126
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 39.4 bits (92), Expect = 0.004
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 24/122 (19%)
Query: 268 IEYNGTRINIIDTPG---HADFG---GEVERILSMV---DNVLLLIDAVE--GPMPQTRF 316
E R IIDTPG E + IL++ + ++ + D E G + +
Sbjct: 209 FEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQI 268
Query: 317 VTRKALKLGF--KP-IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSAL 373
+ + F P +VV+NKID ++ + +L ++ I SAL
Sbjct: 269 HLFEEVHGEFKDLPFLVVINKIDVADE----------ENIKRLEKFVKEKGLNPIKISAL 318
Query: 374 HG 375
G
Sbjct: 319 KG 320
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 38.7 bits (91), Expect = 0.005
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 297 VDNVLLLIDAVEGPMPQTRFVTR---KALKLGFKPIVVVNKIDRSNARPEWVVDATFDLF 353
VD +L+ AV+ P T + R +PI+ + K+D T D
Sbjct: 87 VDQAVLVFSAVQ-PSFSTALLDRFLVLVEANDIQPIICITKMDLIED------QDTEDTI 139
Query: 354 DKLCATEEQLDFPVIYTSALHG 375
+ + V TS+
Sbjct: 140 QAYAEDYRNIGYDVYLTSSKDQ 161
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 37.8 bits (88), Expect = 0.007
Identities = 36/168 (21%), Positives = 59/168 (35%), Gaps = 31/168 (18%)
Query: 222 GKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIF-----SKNCSIEYNGTRIN 276
GKTT + + ++ R + + E T+F ++ TR +
Sbjct: 26 GKTTNLKWI--------YSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFH 77
Query: 277 IIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTR--------FVTRKALKLGFKP 328
+ PG + + IL VD ++ + D+ + + L L P
Sbjct: 78 LYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVP 137
Query: 329 IVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHG 375
IV+ VNK D +A P +V A D FPV+ A G
Sbjct: 138 IVIQVNKRDLPDALPVEMVRAVVDPEG---------KFPVLEAVATEG 176
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 37.9 bits (88), Expect = 0.007
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 15/85 (17%)
Query: 267 SIEYNGTRINIIDTPG-------HADFGGEVERILSM--VDNVLLLIDAVEGPM-PQTRF 316
S G INIIDTPG + ++ L +D +L + + +
Sbjct: 78 SRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQ 137
Query: 317 VTRKALKL-----GFKPIVVVNKID 336
V + K ++V+
Sbjct: 138 VVIAITQTFGKEIWCKTLLVLTHAQ 162
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 38.0 bits (89), Expect = 0.010
Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 12/82 (14%)
Query: 297 VDNVLLLIDAVEGPMPQTRFVTR---KALKLGFKPIVVVNKIDRSNARPEWVVDATFDLF 353
+D ++++ A+ P + R L +P++V+NKID + D D
Sbjct: 131 IDQIVIVS-AIL-PELSLNIIDRYLVGCETLQVEPLIVLNKIDLLD-------DEGMDFV 181
Query: 354 DKLCATEEQLDFPVIYTSALHG 375
++ + + V+ S+
Sbjct: 182 NEQMDIYRNIGYRVLMVSSHTQ 203
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 37.5 bits (88), Expect = 0.013
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 297 VDNVLLLIDAVEGPMPQTRFVTR---KALKLGFKPIVVVNKIDRSNARPEWVVDATFDLF 353
VD V+++ ++ P + +P++V NKID N +
Sbjct: 80 VDRVIIVE-TLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLN-------EEEKKEL 131
Query: 354 DKLCATEEQLDFPVIYTSALHG 375
++ + + V+ SA G
Sbjct: 132 ERWISIYRDAGYDVLKVSAKTG 153
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 35.2 bits (80), Expect = 0.068
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 271
+ ++ GK+TLI+ L R++ + ER + I + IE
Sbjct: 39 TLMVVGESGLGKSTLINSLFLT-------DLYPERVIPGAAEKIERTVQIEASTVEIEER 91
Query: 272 GTRIN--IIDTPGHAD 285
G ++ ++DTPG+ D
Sbjct: 92 GVKLRLTVVDTPGYGD 107
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 35.2 bits (80), Expect = 0.079
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 193 GAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNE 252
G++L K + + ++ GK+TLI+ L R++
Sbjct: 1 GSNLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTD-------LYPERVISGAA 53
Query: 253 IEKERGITIFSKNCSIEYNGTRIN--IIDTPGHAD 285
+ ER + I + IE G ++ ++DTPG+ D
Sbjct: 54 EKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 88
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 34.7 bits (79), Expect = 0.11
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 14/73 (19%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 271
NI + GK+TL+D L N + + G+ + S ++ +
Sbjct: 44 NILCVGETGLGKSTLMDTLF------------NTKFEGEPATHTQPGVQLQSNTYDLQES 91
Query: 272 GTRIN--IIDTPG 282
R+ I+ T G
Sbjct: 92 NVRLKLTIVSTVG 104
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 34.2 bits (79), Expect = 0.11
Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 31/134 (23%)
Query: 258 GITIFSKNCSIEYNGTRINIIDTPG------HADFGGEVERIL------SMVDNVLLLID 305
G+T+ K ++ ++D PG + E+I D ++ ++D
Sbjct: 35 GVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVD 94
Query: 306 A--VEGPMPQTR--FVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 361
A +E R ++T + L+LG IV +N +D + + + ++ D L
Sbjct: 95 ASNLE------RNLYLTLQLLELGIPCIVALNMLDIAEKQ-----NIRIEI-DAL---SA 139
Query: 362 QLDFPVIYTSALHG 375
+L PVI + G
Sbjct: 140 RLGCPVIPLVSTRG 153
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 34.2 bits (78), Expect = 0.14
Identities = 21/139 (15%), Positives = 38/139 (27%), Gaps = 27/139 (19%)
Query: 266 CSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 325
C + + + DF + RI V+ ++D + +
Sbjct: 42 CFRLKHYNEVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFD--FNGSFIPGLPRFAAD 98
Query: 326 FKPIVVVNKID------RSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANE 379
++V NK D + W+ ++ V SA G
Sbjct: 99 NPILLVGNKADLLPRSVKYPKLLRWM--------RRMAEELGLCPVDVCLVSAAKGI--- 147
Query: 380 NSKARQGNMIPLFEAILKY 398
M + EAI +Y
Sbjct: 148 -------GMAKVMEAINRY 159
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 34.0 bits (79), Expect = 0.16
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 297 VDNVLLLIDAVEGPMPQTRFVTR---KALKLGFKPIVVVNKIDRSNARPEWVVDATFDLF 353
VD V+L++ P T + + A K + ++V+NK+D + +
Sbjct: 85 VDQVILVVTVKM-PETSTYIIDKFLVLAEKNELETVMVINKMDLYD-------EDDLRKV 136
Query: 354 DKLCATEEQLDFPVIYTSALHG 375
+L L +P++ TSA G
Sbjct: 137 RELEEIYSGL-YPIVKTSAKTG 157
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 33.8 bits (76), Expect = 0.23
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 275 INIIDTPGHADFGGEVERILSMV---DNVLLLIDAVEGPM-PQTRFVTRKALKLGFKPIV 330
I I+D+PG D E L V +L ++ A + + R++ G
Sbjct: 176 IEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFF 235
Query: 331 VVNKIDR 337
+VN D+
Sbjct: 236 LVNAWDQ 242
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 33.2 bits (75), Expect = 0.23
Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 24/104 (23%)
Query: 548 NIGLRVTQNKHDDSIYEVSGRGELHLTILIEN---MRR--EGYELSVSRPR----VIFKT 598
++G+ + N Y + + + R G ELS ++ + ++
Sbjct: 115 SVGMAIQVN------YSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIA- 167
Query: 599 LNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNI-EINEK 641
YEP+EN+ +++ I+ + N + + E+N+K
Sbjct: 168 -----YEPFENIAIELP--PNEILFSENNDMDNNNDGVDELNKK 204
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 33.2 bits (75), Expect = 0.28
Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 271
+ ++ GK+TLI+ L ++ + ++ + + I+
Sbjct: 10 TLMVVGESGLGKSTLINSLF--------LTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEG 61
Query: 272 GTR--INIIDTPGHAD 285
G + + I+DTPG D
Sbjct: 62 GVQLLLTIVDTPGFGD 77
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 33.0 bits (75), Expect = 0.29
Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 29/145 (20%)
Query: 210 DKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE 269
I ++ GK+ + +L + + + IT + S
Sbjct: 29 QLRIVLVGKTGAGKSATGNSILGRK---------VFHSGTAAK-----SITKKCEKRSSS 74
Query: 270 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLL----IDAVEGPMPQTRF-----VTRK 320
+ T + ++DTPG D + +LL A+ +P R+ +
Sbjct: 75 WKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATE 134
Query: 321 ALKLGFKP------IVVVNKIDRSN 339
+ F I++ + D
Sbjct: 135 KILKMFGERARSFMILIFTRKDDLG 159
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 33.0 bits (75), Expect = 0.37
Identities = 20/117 (17%), Positives = 33/117 (28%), Gaps = 20/117 (17%)
Query: 285 DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKID--RSNAR 341
DF + I V+ ++D + + R +G ++V NK D + +
Sbjct: 58 DFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHR---FVGNNKVLLVGNKADLIPKSVK 114
Query: 342 PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 398
+ V V SA G L +AI Y
Sbjct: 115 HDKVK----HWMRYSAKQLGLKPEDVFLISAAKGQGIAE----------LADAIEYY 157
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A;
translation termination, peptide release, PTC, P
biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo
sapiens}
Length = 204
Score = 32.2 bits (74), Expect = 0.45
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 18/101 (17%)
Query: 406 SNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNK--AKINQIRVF 463
+P++L I+ Y +G + +G++ SG I Q +V+M PNK ++ I
Sbjct: 3 LGSPIRLPIVDK-YKD-MGTVVLGKLESGSICKGQQLVMM------PNKHNVEVLGIL-- 52
Query: 464 KGLDRVLVNEALSGDIVLIT----GIEEICIGSTICDPSKP 500
D V + G+ + I EEI G +CDP+
Sbjct: 53 --SDDVETDTVAPGENLKIRLKGIEEEEILPGFILCDPNNL 91
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.54
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 436 IKSLQDVVIMNGPDDKPNKAKIN 458
+K LQ + + D P A I
Sbjct: 22 LKKLQASLKLYADDSAPALA-IK 43
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 31.5 bits (72), Expect = 1.1
Identities = 21/104 (20%), Positives = 31/104 (29%), Gaps = 31/104 (29%)
Query: 297 VDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 356
+L I P+ +V +NKID+ + DL +KL
Sbjct: 281 SFEILREIGVSGKPI-----------------LVTLNKIDKI----NGDLYKKLDLVEKL 319
Query: 357 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 400
F VI SAL N+ L + I +
Sbjct: 320 SKELYSPIFDVIPISALKRT----------NLELLRDKIYQLAT 353
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 31.1 bits (71), Expect = 1.3
Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 45/139 (32%)
Query: 258 GITIFSKNCSIEYNGTRINIIDTPG-------------HADF--GGEVERILSMVD---- 298
G+T+ K Y G IN+ID PG D+ G+ + ++ + D
Sbjct: 37 GVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP 96
Query: 299 --NVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 356
++ LL++ +E + K I+ + ID + D +L
Sbjct: 97 EQSLYLLLEILE---------------MEKKVILAMTAIDEAKKT-----GMKIDR-YEL 135
Query: 357 CATEEQLDFPVIYTSALHG 375
++ L PV++TS++ G
Sbjct: 136 ---QKHLGIPVVFTSSVTG 151
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase,
glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo
sapiens} PDB: 3thc_A*
Length = 654
Score = 31.3 bits (70), Expect = 1.6
Identities = 10/83 (12%), Positives = 29/83 (34%), Gaps = 1/83 (1%)
Query: 503 LPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSI 562
L + + + + + P +++ + + + +++
Sbjct: 381 LTFIQVKQHYGFVLYRTTL-PQDCSNPAPLSSPLNGVHDRAYVAVDGIPQGVLERNNVIT 439
Query: 563 YEVSGRGELHLTILIENMRREGY 585
++G+ L +L+ENM R Y
Sbjct: 440 LNITGKAGATLDLLVENMGRVNY 462
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 30.4 bits (69), Expect = 2.2
Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 46/140 (32%)
Query: 258 GITIFSKNCSIEYNGTRINIIDTPG-------------HADF--GGEVERILSMVD---- 298
G+T+ K +EY ++D PG +F G + I+ +VD
Sbjct: 35 GVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL 94
Query: 299 --NVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDK 355
N+ L ++ E + K I++V NK D + A D+ K
Sbjct: 95 MRNLFLTLELFE---------------MEVKNIILVLNKFDLLKKK-----GAKIDI-KK 133
Query: 356 LCATEEQLDFPVIYTSALHG 375
+ ++L PVI T+A G
Sbjct: 134 M---RKELGVPVIPTNAKKG 150
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 30.6 bits (68), Expect = 2.4
Identities = 28/168 (16%), Positives = 58/168 (34%), Gaps = 17/168 (10%)
Query: 441 DVVIMNGPDDKPNKAKINQIRVFKGLDRVLVN-EALSGDIVLITGIEEICIGSTICDPSK 499
VV+ +K KIN+ G+ + L G+ + G E + +
Sbjct: 115 QVVVATDTVSLEDKVKINEFCHSSGIRFISSETRGLFGNTFVDLGDEFTVL---DPTGEE 171
Query: 500 PNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHD 559
P + +I+ M++++ +G F+ +++ + N+ L +
Sbjct: 172 PRTGMVSDIEPD--GTVTMLDDNRHGLEDGNFVRFSEVEGL---DKLNDGTLFKVEVLGP 226
Query: 560 DSIYEVSGRGELHLTILIENMRREGYELSVSRPRVI-FKTLNGELYEP 606
+ + ++ G V PR I FK+L +L P
Sbjct: 227 FAF-------RIGSVKEYGEYKKGGIFTEVKVPRKISFKSLKQQLSNP 267
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 30.6 bits (70), Expect = 2.4
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 11/54 (20%)
Query: 323 KLGFKP-IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHG 375
L +P +V +NK+D +++ + L + V+ SAL G
Sbjct: 266 ALLRRPSLVALNKVD--------LLEE--EAVKALADALAREGLAVLPVSALTG 309
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 30.2 bits (68), Expect = 2.5
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 8/100 (8%)
Query: 277 IIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKID 336
I++T G G + MVD + L A G Q K + ++V+NK D
Sbjct: 153 IVETVG---VGQSETEVARMVDCFISLQIAGGGDDLQGI----KKGLMEVADLIVINKDD 205
Query: 337 RSNARPEWVVDATFDLFDKLCATEEQLDFP-VIYTSALHG 375
N + ++ + + P V+ SAL
Sbjct: 206 GDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEK 245
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 29.7 bits (67), Expect = 2.5
Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 13/90 (14%)
Query: 267 SIEYNGTRINIIDTPGH----ADFGGEVERILSMVDNVLLLIDAVEGP--MPQTR----- 315
+ +Y+G+ + ++D PGH ++ V ++ ++D+ P + T
Sbjct: 85 AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVD 144
Query: 316 -FVTRKALKLGFKPIVVV-NKIDRSNARPE 343
++ I++ NK + ARP
Sbjct: 145 ILSITESSCENGIDILIACNKSELFTARPP 174
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 29.4 bits (67), Expect = 2.8
Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 45/139 (32%)
Query: 258 GITIFSKNCSIEYNGTRINIIDTPG-------------HADF--GGEVERILSMVD---- 298
G+T+ K EYNG + ++D PG D+ + + ++++VD
Sbjct: 35 GVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL 94
Query: 299 --NVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 356
N+ L + +E +G ++ +NK+D + + +D DKL
Sbjct: 95 ERNLYLTLQLME---------------MGANLLLALNKMDLAKSL-GIEIDV-----DKL 133
Query: 357 CATEEQLDFPVIYTSALHG 375
E+ L V+ SA
Sbjct: 134 ---EKILGVKVVPLSAAKK 149
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta
lactamase, mitochondria; 2.60A {Homo sapiens}
Length = 289
Score = 29.8 bits (67), Expect = 3.1
Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 9/119 (7%)
Query: 218 HVDHGKTTLIDHLLRQSG---TFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTR 274
H DH + I + + T+ + + E+ I+ G
Sbjct: 80 HRDH--SGGIGDICKSINNDTTYCIKKLPRNPQREEIIGNGEQQYVYLKDGDVIKTEGAT 137
Query: 275 INIIDTPGHAD----FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 329
+ ++ TPGH D E E + D +L V + ++ LK+ I
Sbjct: 138 LRVLYTPGHTDDHMALLLEEENAIFSGDCILGEGTTVFEDLYDYMNSLKELLKIKADII 196
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 29.3 bits (66), Expect = 3.9
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 265 NCSIEYNGTRINIIDTPGH----ADFGGEVERILSMVDNVLLLIDAVEGP--MPQTR--- 315
+ +Y+G+ + ++D PGH ++ V ++ ++D+ P + T
Sbjct: 47 LSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFL 106
Query: 316 ---FVTRKALKLGFKPIVVV-NKIDRSNARPE 343
++ I++ NK + ARP
Sbjct: 107 VDILSITESSCENGIDILIACNKSELFTARPP 138
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 29.1 bits (66), Expect = 4.1
Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 45/139 (32%)
Query: 258 GITIFSKNCSIEYNGTRINIIDTPG-------------HADF--GGEVERILSMVD---- 298
G+T+ K EYNG + ++D PG D+ + + ++++VD
Sbjct: 39 GVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL 98
Query: 299 --NVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 356
N+ L + +E +G ++ +NK+D + + +D DKL
Sbjct: 99 ERNLYLTLQLME---------------MGANLLLALNKMDLAKSL-GIEIDV-----DKL 137
Query: 357 CATEEQLDFPVIYTSALHG 375
E+ L V+ SA
Sbjct: 138 ---EKILGVKVVPLSAAKK 153
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 29.3 bits (65), Expect = 4.6
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 65 NYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKIS 119
YL E + +E + ++ + ++D + N+ N ++ + IS
Sbjct: 178 KYLQELHELHEDWLIHQRRPQSCKV--LVLDADLNLENIGTEYQRSESSIFDAIS 230
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 29.3 bits (65), Expect = 5.0
Identities = 11/46 (23%), Positives = 15/46 (32%)
Query: 258 GITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLL 303
+T + I IIDTP + E + V LL
Sbjct: 56 TLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLL 101
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 29.4 bits (65), Expect = 5.1
Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 271
+ ++ GK+TLI+ L ++ + ++ + + I+
Sbjct: 33 TLMVVGESGLGKSTLINSLF--------LTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEG 84
Query: 272 GTRIN--IIDTPGHAD 285
G ++ I+DTPG D
Sbjct: 85 GVQLLLTIVDTPGFGD 100
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function;
2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Length = 217
Score = 28.8 bits (64), Expect = 5.3
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 2/82 (2%)
Query: 602 ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNE 661
+ P + E I L G + I + + V L +P+ + F +
Sbjct: 134 QRKTPLTEYTLQCEYHQLTGIEALLGQCDGKI--INSDYQAFVLLRVALPAAKVAEFSAK 191
Query: 662 FITLTRGTGLISHVFEEYAPFY 683
+RG+ + + EE +
Sbjct: 192 LADFSRGSLQLLAIEEEGGSHH 213
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 28.8 bits (65), Expect = 5.8
Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 33/135 (24%)
Query: 258 GITIFSKNCSIEYNGTRINIIDTPG------HADFGGEVERI------LSMVDNVLLLID 305
G+T+ K I I D PG +A+ + E+I D ++ +ID
Sbjct: 33 GVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVID 92
Query: 306 AVEGPMPQTR-----FVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 360
A ++T + +LG +V +N +D + R + D +KL E
Sbjct: 93 A-------CHLERHLYLTSQLFELGKPVVVALNMMDIAEHR-----GISIDT-EKL---E 136
Query: 361 EQLDFPVIYTSALHG 375
L VI A
Sbjct: 137 SLLGCSVIPIQAHKN 151
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 28.9 bits (64), Expect = 6.6
Identities = 35/222 (15%), Positives = 63/222 (28%), Gaps = 53/222 (23%)
Query: 222 GKTTLIDHLLRQSGTFRKNQNIN----------------ARIMDSNEIEKERGITIFSKN 265
GKTTL R K +N + EI +E +
Sbjct: 26 GKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIV 85
Query: 266 CSIEYNGTRIN----------------IIDTPGHAD---FGGEVERILSMVDN--VLLLI 304
S + + N +IDTPG + F R++ + V+ +
Sbjct: 86 ESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYIS 145
Query: 305 DAVEGPMPQTR-----FVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 359
D P F L+LG I +NK+D E + F+ +
Sbjct: 146 DPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLL---SEEEKERHRKYFEDIDYL 202
Query: 360 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 401
+L + + +M+ ++ + +
Sbjct: 203 TARLKLDPSMQGLMA--------YKMCSMMTEVLPPVRVLYL 236
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 6.9
Identities = 15/94 (15%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
Query: 529 GKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELS 588
+ + + +K + + I + G+R+ + + + Y + + I+ E++ E +E S
Sbjct: 882 KEPVDDKDVKAKYETSILEHSGIRLIEPELFNG-YNPEKKEMIQEVIVEEDL--EPFEAS 938
Query: 589 VSRPRVIFKTLNGELYEPYENLFVDIEEINQGII 622
FK +G+ + +I E + +
Sbjct: 939 KETAEQ-FKHQHGD-----KVDIFEIPETGEYSV 966
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 28.7 bits (64), Expect = 7.5
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 14/103 (13%)
Query: 277 IIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG---FKPIVVVN 333
+I+T G G + +MVD +LL A G Q +K G IVVVN
Sbjct: 176 LIETVG---VGQSEVAVANMVDTFVLLTLARTGDQLQ-------GIKKGVLELADIVVVN 225
Query: 334 KIDRSNARPEWVVDATF-DLFDKLCATEEQLDFPVIYTSALHG 375
K D + + + + E PV+ SA+ G
Sbjct: 226 KADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEG 268
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 28.6 bits (64), Expect = 7.6
Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 17/105 (16%)
Query: 277 IIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG---FKPIVVVN 333
+++T G G + + D L+L+ G Q +K G ++ VN
Sbjct: 152 LVETVG---VGQSETAVADLTDFFLVLMLPGAGDELQ-------GIKKGIFELADMIAVN 201
Query: 334 KIDRSNARPEWVVDATFDLFDKLCATEEQLDF---PVIYTSALHG 375
K D + A + L PV+ S LHG
Sbjct: 202 KADDGDGERR-ASAAASEYRAALHILTPPSATWTPPVVTISGLHG 245
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A
{Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A*
1s8a_A 1s89_A
Length = 152
Score = 27.9 bits (62), Expect = 7.8
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 206 KLTLDKNIAIIAHVDHGKTTLID 228
L K+IA++AH DH K L+
Sbjct: 7 TLPARKHIALVAH-DHCKQMLMS 28
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus}
SCOP: d.14.1.11 d.58.11.2
Length = 191
Score = 28.3 bits (63), Expect = 7.9
Identities = 14/76 (18%), Positives = 19/76 (25%), Gaps = 2/76 (2%)
Query: 593 RVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPS 652
+ L + G + L R E E VR +P
Sbjct: 113 AEALRRAPKVPLVERVGLAFLVPFAEVGRVYALLEARALKA--EETYTPEGVRFALLLPK 170
Query: 653 RGLIGFQNEFITLTRG 668
GF + TRG
Sbjct: 171 PEREGFLRALLDATRG 186
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A
1wo8_A
Length = 134
Score = 27.4 bits (61), Expect = 8.4
Identities = 6/18 (33%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 211 KNIAIIAHVDHGKTTLID 228
+ +A+IAH D K ++
Sbjct: 4 RALALIAH-DAKKEEMVA 20
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.405
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,555,376
Number of extensions: 822221
Number of successful extensions: 1990
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1836
Number of HSP's successfully gapped: 142
Length of query: 793
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 692
Effective length of database: 3,881,772
Effective search space: 2686186224
Effective search space used: 2686186224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.6 bits)