RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1760
(793 letters)
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 187 bits (476), Expect = 1e-55
Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 5/192 (2%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 271
N+ I HVDHGKTTL + + + +D+ E+ RGITI + +
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA 64
Query: 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 331
D PGHAD+ + + +D +L++ A +GPMPQTR A ++G + +VV
Sbjct: 65 ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVV 124
Query: 332 V-NKID--RSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNM 388
NK D + + E V +L + E + P+I SAL + + ++
Sbjct: 125 YVNKADAVQDSEMVELVELEIRELLTEFGYKGE--ETPIIVGSALCALEQRDPELGLKSV 182
Query: 389 IPLFEAILKYVP 400
L +A+ Y+P
Sbjct: 183 QKLLDAVDTYIP 194
>d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 233
Score = 182 bits (462), Expect = 3e-53
Identities = 70/208 (33%), Positives = 115/208 (55%), Gaps = 4/208 (1%)
Query: 12 VIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEAD 71
++ KP G++S++ + + + + ++VG+ GTLDP ATG+L + ATK L+ A
Sbjct: 6 IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAP 65
Query: 72 KYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYK 131
K Y A I LG TT T D EG+++ +IE I+ + G+I Q+P SA+K
Sbjct: 66 KSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVG 125
Query: 132 GIPLYKYARSGITIKRKLRYIKIYKITIIDYT----IPYLTLRIHCSKGTYIRVLSEDIG 187
G Y+ AR G +++ + R I+I + ++ + + + I CS GTYIR L+ D+G
Sbjct: 126 GRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDLG 185
Query: 188 KMLGCGAHLKYLRRIGIDKLTLDKNIAI 215
LG G H+ LRR + + LD+ ++
Sbjct: 186 DALGVGGHVTALRRTRVGRFELDQARSL 213
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 180 bits (457), Expect = 9e-53
Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 10/199 (5%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNI-NARIMDSNEIEKERGITIFSKNCSIEY 270
N+ I HVDHGKTTL L + N + + +D E+ RGITI + + E
Sbjct: 5 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 64
Query: 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 330
+ +D PGHAD+ + + +D +L++ A +GPMPQTR A ++G IV
Sbjct: 65 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 124
Query: 331 -VVNKIDR--SNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQG- 386
+NK+D + V DL ++ +++ + N K R+G
Sbjct: 125 VFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGE 184
Query: 387 -----NMIPLFEAILKYVP 400
+ L +AI +Y+P
Sbjct: 185 NEWVDKIWELLDAIDEYIP 203
>d1r3ea2 d.265.1.2 (A:10-237) Pseudouridine synthase II TruB
{Thermotoga maritima [TaxId: 2336]}
Length = 228
Score = 166 bits (421), Expect = 1e-47
Identities = 73/204 (35%), Positives = 115/204 (56%), Gaps = 1/204 (0%)
Query: 12 VIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEAD 71
++ YKP G +S++ + +++ L +KVG+ GTLDPFA G+L + + T+ + +
Sbjct: 5 ILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLK 64
Query: 72 KYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYK 131
K Y + LG+ TET DI G + + + E I + + +F G+ Q+PP YSA KYK
Sbjct: 65 KVYWVKMRLGLITETFDITG-EVVEERECNVTEEEIREAIFSFVGEYDQVPPAYSAKKYK 123
Query: 132 GIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLG 191
G LYK AR G I + +KI+KI ++ ++ R+ S GTYIR L DIG LG
Sbjct: 124 GERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGTYIRSLCMDIGYKLG 183
Query: 192 CGAHLKYLRRIGIDKLTLDKNIAI 215
CGA L R + T+++++ +
Sbjct: 184 CGATAVELVRESVGPHTIEESLNV 207
>d1k8wa5 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB
{Escherichia coli [TaxId: 562]}
Length = 242
Score = 161 bits (407), Expect = 2e-45
Identities = 99/204 (48%), Positives = 138/204 (67%), Gaps = 1/204 (0%)
Query: 12 VIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEAD 71
V+ KP G+SSN+AL+K+K + NA + G+TG LDP ATG+LP+C GEATKFS YL ++D
Sbjct: 6 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 65
Query: 72 KYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYK 131
K Y I LG T+T D +G+I+ + + S E + L F G I QIP MYSALKY+
Sbjct: 66 KRYRVIARLGQRTDTSDADGQIV-EERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 124
Query: 132 GIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLG 191
G LY+YAR GI + R+ R I +Y++ I + L L IHCSKGTYIR + +D+G+ LG
Sbjct: 125 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 184
Query: 192 CGAHLKYLRRIGIDKLTLDKNIAI 215
CGAH+ YLRR+ + K +++ + +
Sbjct: 185 CGAHVIYLRRLAVSKYPVERMVTL 208
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 151 bits (382), Expect = 5e-42
Identities = 52/190 (27%), Positives = 80/190 (42%), Gaps = 28/190 (14%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNI---------------NARIMDSNEIEKE 256
N+ +I HVD GK+T HL+ + G K A ++D + E+E
Sbjct: 8 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 67
Query: 257 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPM----- 311
RGITI E ++ +ID PGH DF + S D +L+I G
Sbjct: 68 RGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGIS 127
Query: 312 --PQTRFVTRKALKLGFKPIVV-VNKIDRSN---ARPEWVVDATFDLFDKLCATEEQLDF 365
QTR A LG + ++V VNK+D +R + +V T + K+ + + F
Sbjct: 128 KDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPF 187
Query: 366 PVIYTSALHG 375
+ S +G
Sbjct: 188 --VPISGWNG 195
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 151 bits (382), Expect = 1e-41
Identities = 58/173 (33%), Positives = 87/173 (50%), Gaps = 5/173 (2%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNI--NARIMDSNEIEKERGITIFSKNCSI 268
+NI I AH+D GKTT + +L +G K + A MD E E+ERGITI + +
Sbjct: 7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC 66
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ RINIID PGH DF EVER + ++D +++ D+ +G PQ+ V R+A K
Sbjct: 67 FWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR 126
Query: 329 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENS 381
I NK+D++ A V + ++L A + P+ G +
Sbjct: 127 IAFANKMDKTGADLWLV---IRTMQERLGARPVVMQLPIGREDTFSGIIDVLR 176
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 148 bits (374), Expect = 3e-41
Identities = 58/222 (26%), Positives = 84/222 (37%), Gaps = 37/222 (16%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKE 256
N+ +I HVDHGK+TL+ LL G + A ++D + E+E
Sbjct: 5 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 64
Query: 257 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP------ 310
RG+TI E IID PGH DF + S D +L++ A +G
Sbjct: 65 RGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMS 124
Query: 311 -MPQTRFVTRKALKLGFKP-IVVVNKID-----RSNARPEWVVDATFDLFDKLCATEEQL 363
QTR A +G IV VNK+D R + +VD ++
Sbjct: 125 VEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKV 184
Query: 364 DFPVIYTSALHGYANENSKARQGNM----IPLFEAILKYVPV 401
F + A G +N + NM P E L + +
Sbjct: 185 RF--VPVVAPSG---DNITHKSENMKWYNGPTLEEYLDQLEL 221
>d2ey4a2 d.265.1.2 (A:8-252) Pseudouridine synthase II TruB
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 245
Score = 145 bits (366), Expect = 7e-40
Identities = 64/229 (27%), Positives = 97/229 (42%), Gaps = 43/229 (18%)
Query: 12 VIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEAD 71
VI KP G +S+ + IK +LN +K G+ GTLDP +G+LP+ +AT+ L A
Sbjct: 44 VINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQALLPAG 103
Query: 72 KYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYK 131
K Y A++HL + I +++ F G+I Q PP+ SA
Sbjct: 104 KEYVALMHLHGDVPE------------------DKIIQVMKEFEGEIIQRPPLRSA---- 141
Query: 132 GIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLG 191
+KR+LR K+Y I +++ + R+ GTYIR L IG LG
Sbjct: 142 -------------VKRRLRTRKVYYIEVLEIEGRDVLFRVGVEAGTYIRSLIHHIGLALG 188
Query: 192 CGAHLKYLRRIGIDKLTLDKNI--------AIIAHVDHGKTTLIDHLLR 232
GAH+ LRR D+ + + G ++
Sbjct: 189 VGAHMSELRRTRSGPFKEDETLITLHDLVDYYYFWKEDGIEEYFRKAIQ 237
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 147 bits (371), Expect = 2e-39
Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 20/186 (10%)
Query: 198 YLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKER 257
+R + +DK+T +N+++IAHVDHGK+TL D L++++G + AR D+ + E+ER
Sbjct: 6 QMRSL-MDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQER 64
Query: 258 GITIFSKNCSIEY----------------NGTRINIIDTPGHADFGGEVERILSMVDNVL 301
GITI S S+ N IN+ID+PGH DF EV L + D L
Sbjct: 65 GITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGAL 124
Query: 302 LLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 361
+++D +EG QT V R+AL KP+VV+NK+DR+ + + DL+ T E
Sbjct: 125 VVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKE---DLYQTFARTVE 181
Query: 362 QLDFPV 367
++ V
Sbjct: 182 SVNVIV 187
>d2apoa2 d.265.1.2 (A:17-246) Pseudouridine synthase II TruB
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 230
Score = 138 bits (349), Expect = 1e-37
Identities = 63/228 (27%), Positives = 97/228 (42%), Gaps = 42/228 (18%)
Query: 12 VIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEAD 71
V+ KP G +S+ +K +LN K G+ GTLDP TG+LP+ ATK
Sbjct: 31 VVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERATKTIPMWHIPP 90
Query: 72 KYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYK 131
K Y ++HL D I ++ F G+I Q PP+ +A
Sbjct: 91 KEYVCLMHLHRDASEED------------------ILRVFKEFTGRIYQRPPLKAA---- 128
Query: 132 GIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLG 191
+KR+LR KI+++ ++D + R+ C GTYIR L EDIG+ LG
Sbjct: 129 -------------VKRRLRIRKIHELELLDKDGKDVLFRVKCQSGTYIRKLCEDIGEALG 175
Query: 192 CGAHLKYLRRIGIDKLTLDKNI-------AIIAHVDHGKTTLIDHLLR 232
AH++ LRR + A + + G + +++
Sbjct: 176 TSAHMQELRRTKSGCFEEKDAVYLQDLLDAYVFWKEDGDEEELRRVIK 223
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 118 bits (295), Expect = 1e-30
Identities = 50/208 (24%), Positives = 74/208 (35%), Gaps = 27/208 (12%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINAR-----------------IMDSNEIE 254
+VD GK+TLI LL S ++ ++D + E
Sbjct: 11 RFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAE 70
Query: 255 KERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQT 314
+E+GITI + I DTPGH + + S D ++L+DA G QT
Sbjct: 71 REQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT 130
Query: 315 RFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA--TEEQLDFPVIYTSA 372
R + A LG K IVV N E V ++ + K + + SA
Sbjct: 131 RRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSA 190
Query: 373 LHGYANENSKARQGNMI-----PLFEAI 395
L G +N + L E +
Sbjct: 191 LKG---DNVVNKSERSPWYAGQSLMEIL 215
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 115 bits (289), Expect = 1e-29
Identities = 49/192 (25%), Positives = 73/192 (38%), Gaps = 28/192 (14%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKE 256
NI I HVD GK+TL ++L +G K + +DS E+E
Sbjct: 26 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 85
Query: 257 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP---- 312
+G T+ E R +++D PGH + + S D +L+I A G
Sbjct: 86 KGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFE 145
Query: 313 ---QTRFVTRKALKLGFKPIVV-VNKIDR-----SNARPEWVVDATFDLFDKLCATEEQL 363
QTR A G +VV +NK+D S R + VD ++ +
Sbjct: 146 RGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKT 205
Query: 364 DFPVIYTSALHG 375
D + SA G
Sbjct: 206 DVKYMPVSAYTG 217
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 110 bits (276), Expect = 2e-28
Identities = 44/206 (21%), Positives = 73/206 (35%), Gaps = 30/206 (14%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 271
NI ++ HVDHGKTTL+ + + + + E G+ K
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVT 69
Query: 272 GT---------------RINIIDTPGHADFGGEVERILSMVD-NVLLLIDAVEGPMPQTR 315
RI+ ID PGH + +++D +L++ P PQTR
Sbjct: 70 EPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTR 129
Query: 316 FVTRKALKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALH 374
+G K +++ NK+D + + + + P+I SALH
Sbjct: 130 EHFVALGIIGVKNLIIVQNKVDVVSKEEALSQ---YRQIKQFTKGTWAENVPIIPVSALH 186
Query: 375 GYANENSKARQGNMIPLFEAILKYVP 400
N+ L E I +Y+
Sbjct: 187 KI----------NIDSLIEGIEEYIK 202
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 96.1 bits (238), Expect = 1e-22
Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 7/174 (4%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARI--MDSNEIEKERGITIFSKNCSI 268
+ +A++ H GKTTL + LL ++G + + D K T+ + +
Sbjct: 3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL 62
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ G R+ ++D PG+ DF GE+ L D L+ + A G T A +LG
Sbjct: 63 LFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPR 122
Query: 329 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSK 382
+VVV K+D + DL L +D P+ G +
Sbjct: 123 MVVVTKLD----KGGDYYALLEDLRSTLGPI-LPIDLPLYEGGKWVGLIDVFHG 171
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 92.8 bits (229), Expect = 7e-22
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 3/191 (1%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIM--DSNEIEKERGITIFSKNCSIEY 270
++++ HVDHGKTTL+DH+ + R+ I I + E F K SI
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67
Query: 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 330
+ IDTPGH F +R ++ D +L++D EG PQT+ +V
Sbjct: 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVV 127
Query: 331 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP 390
NKIDR + + F K + Q + E ++ + + +
Sbjct: 128 AANKIDRIHGWRVHEGRPFMETFSKQDI-QVQQKLDTKVYELVGKLHEEGFESERFDRVT 186
Query: 391 LFEAILKYVPV 401
F + + +P+
Sbjct: 187 DFASQVSIIPI 197
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 91.2 bits (225), Expect = 1e-21
Identities = 42/199 (21%), Positives = 72/199 (36%), Gaps = 21/199 (10%)
Query: 212 NIAIIAHVDHGKTTLIDHLL----------RQSGTFRKNQNINARIMDSNEIEKERGITI 261
NI ++ HVDHGKTTL L + G K +A I + +
Sbjct: 7 NIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPV 66
Query: 262 FSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKA 321
R++ ID PGH + S++D +L+I A E A
Sbjct: 67 CPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA 126
Query: 322 LKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENS 381
L++ + +++ ++ + + + + P+I SALHG
Sbjct: 127 LQIIGQKNIIIA-QNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGA----- 180
Query: 382 KARQGNMIPLFEAILKYVP 400
N+ L +AI ++P
Sbjct: 181 -----NIDVLVKAIEDFIP 194
>d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 138
Score = 75.9 bits (186), Expect = 6e-17
Identities = 21/113 (18%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 401 VHKDNSNNPLQLQIISLEYSSYLGK-IGIGRILSGRIKSLQDVVIMN-----GPDDKPNK 454
+ + L L + + +S G+ GR+ +G +KS Q V I G D
Sbjct: 26 IKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFI 85
Query: 455 AKINQIRVFKGLDRVLVNEALSGDIVLITGIEE-ICIGSTICDPSKPNGLPML 506
I ++ + G +++ +G+I+ + GI++ + T+ + + ++
Sbjct: 86 KAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVM 138
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 76.3 bits (186), Expect = 1e-16
Identities = 48/189 (25%), Positives = 73/189 (38%), Gaps = 21/189 (11%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 271
N+ I H+DHGKTTL L + T D ++RGITI + +
Sbjct: 7 NLGIFGHIDHGKTTLSKVLTEIAST---------SAHDKLPESQKRGITIDIGFSAFKLE 57
Query: 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 331
RI ++D PGHAD V ++D L+++DA EGP QT ++
Sbjct: 58 NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIP--II 115
Query: 332 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPL 391
V NA E + + L +T + +I SA G+ + L
Sbjct: 116 VVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGF----------GVDEL 165
Query: 392 FEAILKYVP 400
I+ +
Sbjct: 166 KNLIITTLN 174
>d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II
{Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 103
Score = 70.9 bits (173), Expect = 2e-15
Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 405 NSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFK 464
+ P ++ ++ ++G++ R+ GR+K + G + + V
Sbjct: 5 FGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQVR------LPHLYVPM 58
Query: 465 GLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPM 505
G D + V EA +G ++ + E + G + KP +
Sbjct: 59 GKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEV 99
>d2bv3a5 d.58.11.1 (A:600-688) Elongation factor G (EF-G) {Thermus
thermophilus [TaxId: 274]}
Length = 89
Score = 66.4 bits (162), Expect = 3e-14
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 603 LYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEF 662
+ EP + V E G ++ LN R G + +E +V + +P + G+ +
Sbjct: 2 ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV-IRAFVPLAEMFGYATDL 60
Query: 663 ITLTRGTGLISHVFEEYAP 681
+ T+G G F+ Y
Sbjct: 61 RSKTQGRGSFVMFFDHYQE 79
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 70.0 bits (170), Expect = 6e-14
Identities = 33/210 (15%), Positives = 56/210 (26%), Gaps = 42/210 (20%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN----------------ARIMDSNEIEKE 256
+ + GKTTL R K +N + EI +E
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62
Query: 257 RGITIFSKNCSIEYNGT----------------RINIIDTPGHADFGGEVERILSMVDN- 299
+ S + +IDTPG + E + +++N
Sbjct: 63 GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL 122
Query: 300 ----VLLLIDAVEGPMPQTRF-----VTRKALKLGFKPIVVVNKIDRSNARPEWVVDATF 350
V+ + D P L+LG I +NK+D + + F
Sbjct: 123 PYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYF 182
Query: 351 DLFDKLCATEEQLDFPVIYTSALHGYANEN 380
+ D L A + +
Sbjct: 183 EDIDYLTARLKLDPSMQGLMAYKMCSMMTE 212
>d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus
thermophilus, EF-G-2 [TaxId: 274]}
Length = 96
Score = 64.2 bits (156), Expect = 3e-13
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 603 LYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEF 662
L EP L V + G ++ L R G + +E E + +P ++ +
Sbjct: 2 LLEPIYRLKVLAPQERVGDVLSDLQARRGRILGME-QEGALSVVHAEVPLAEVLEYYKAL 60
Query: 663 ITLTRGTGLISHVFEEYAP 681
LT G G + F YA
Sbjct: 61 PGLTGGAGAYTLEFSHYAE 79
>d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II
{Thermus thermophilus [TaxId: 274]}
Length = 121
Score = 61.6 bits (149), Expect = 4e-12
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 407 NNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGL 466
N PL + Y+G++ R+ SG + S V K K ++ ++
Sbjct: 24 NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT----KGRKERVARLLRMHAN 79
Query: 467 DRVLVNEALSGDIVLITGIEEICIGSTICDPSKPN 501
R V E +GD+ + G++E G T+ P
Sbjct: 80 HREEVEELKAGDLGAVVGLKETITGDTLVGEDAPR 114
>d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 117
Score = 60.8 bits (147), Expect = 7e-12
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 605 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKER-VRLEYRIPSRGLIGFQNEFI 663
EP + + E G I LN + G + + E ++ +P GF E
Sbjct: 1 EPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELR 60
Query: 664 TLTRGTGLISHVFEEYAPFY 683
T G VF+ ++
Sbjct: 61 QATGGQAFPQMVFDHWSTLG 80
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 61.2 bits (147), Expect = 2e-11
Identities = 36/187 (19%), Positives = 72/187 (38%), Gaps = 18/187 (9%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 271
+AI+ + GK+TL + +L + R +E+ + +F +
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR- 68
Query: 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 331
+ + V + D V++++DA +G Q + + + G +VV
Sbjct: 69 --KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVV 126
Query: 332 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-PVIYTSALHGYANENSKARQGNMIP 390
NK D R + + T +KL +D+ P+I+TSA G+ N+
Sbjct: 127 FNKWDLVVHREKRYDEFTKLFREKL----YFIDYSPLIFTSADKGW----------NIDR 172
Query: 391 LFEAILK 397
+ +A+
Sbjct: 173 MIDAMNL 179
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 57.5 bits (138), Expect = 3e-09
Identities = 35/274 (12%), Positives = 78/274 (28%), Gaps = 37/274 (13%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 271
N+A+ GK++ I+ L + + ++ N
Sbjct: 58 NVAVTGETGSGKSSFINTLR------------GIGNEEEGAAKTGVVEVTMERHPYKHPN 105
Query: 272 GTRINIIDTPGHADFGGEVERILSMVDN---VLLLIDAVEGPMPQTRFVTRKALKLGFKP 328
+ D PG + L + +I + + + + +
Sbjct: 106 IPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEF 165
Query: 329 IVVVNKIDRSNARPEWVVDATFDLFDKLCAT---------EEQLDFPVIYTSALHGYANE 379
V K+D TFD L E + P I+ +
Sbjct: 166 YFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLS------- 218
Query: 380 NSKARQGNMIP-LFEAILKYVPVHKDN----SNNPLQLQIISLEYSSYLGKIGIGRILSG 434
+K P L + ++ +P++K + S + +I + +I + +
Sbjct: 219 -NKNVCHYDFPVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAAD 277
Query: 435 RIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDR 468
+ + + + D + K + R G+D
Sbjct: 278 LVNIIPSLTFLLDSDLETLKKSMKFYRTVFGVDE 311
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 52.4 bits (124), Expect = 2e-08
Identities = 33/194 (17%), Positives = 58/194 (29%), Gaps = 20/194 (10%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQ----SGTFRKNQNINARIMDSNEIEKERGITIFSKNCSI 268
I + GK+TLI L + + I +++I G
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLID--AVEGPMPQTRFVTRKALKLGF 326
+ I+ +V ++ +I G +P + +L
Sbjct: 63 VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122
Query: 327 KPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQG 386
IV VNK+D+ E + L +K ++D I SA G
Sbjct: 123 PTIVAVNKLDKIKNVQEVIN----FLAEKFEVPLSEIDKVFIPISAKFGD---------- 168
Query: 387 NMIPLFEAILKYVP 400
N+ L I + +
Sbjct: 169 NIERLKNRIFEVIR 182
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 45.1 bits (105), Expect = 6e-06
Identities = 31/188 (16%), Positives = 56/188 (29%), Gaps = 26/188 (13%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG 272
+ I+ + GK+TL + L+++ +++ R + +E C + N
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62
Query: 273 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVV 332
I D VL ++D G + + K I+V
Sbjct: 63 QDIISQKMKEVTLNMIR------EADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVA 116
Query: 333 NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLF 392
NK + V + L I SA H N+ +
Sbjct: 117 NKAENLREFEREVKPELYSLGFG----------EPIPVSAEHNI----------NLDTML 156
Query: 393 EAILKYVP 400
E I+K +
Sbjct: 157 ETIIKKLE 164
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 43.5 bits (101), Expect = 4e-05
Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 33/147 (22%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG 272
I I + GKT+L+ L + + +Y+G
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTD--------------------SVRPTVVSQEPLSAADYDG 45
Query: 273 TRINIIDTPGHA----DFGGEVERILSMVDNVLLLIDAVEGP---------MPQTRFVTR 319
+ + ++D PGH ++ V ++ ++D+ P + +T
Sbjct: 46 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITE 105
Query: 320 KALKLGFKPIVVVNKIDRSNARPEWVV 346
+ + G ++ NK + ARP +
Sbjct: 106 SSCENGIDILIACNKSELFTARPPSKI 132
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 42.4 bits (98), Expect = 6e-05
Identities = 29/188 (15%), Positives = 58/188 (30%), Gaps = 24/188 (12%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG 272
IAI+ + GK+TL++ LL Q +I +R + T +
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQ------KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTP 61
Query: 273 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVV 332
+ + V+ V+ +++ V K + I+ V
Sbjct: 62 GLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDD-EMVLNKLREGKAPVILAV 120
Query: 333 NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLF 392
NK+D + + + F ++ SA G N+ +
Sbjct: 121 NKVDNVQEKADLLPHLQFLASQMNFL-------DIVPISAETGL----------NVDTIA 163
Query: 393 EAILKYVP 400
+ K++P
Sbjct: 164 AIVRKHLP 171
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 41.5 bits (96), Expect = 8e-05
Identities = 31/186 (16%), Positives = 65/186 (34%), Gaps = 29/186 (15%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 271
+ I+ + GK+TL++ LL +++ I I + I I +
Sbjct: 2 RMVIVGKPNVGKSTLLNRLL------NEDRAIVTDIPGTTRDVISEEIVI--RGILFRIV 53
Query: 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 331
T +T + G +ER L ++ +++ ++ P + ++ K +V
Sbjct: 54 DTAGVRSETNDLVERLG-IERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLV 112
Query: 332 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPL 391
V VD + ++ + D ++ SAL G + L
Sbjct: 113 VI----------NKVDVVEKINEEEIKNKLGTDRHMVKISALKGE----------GLEKL 152
Query: 392 FEAILK 397
E+I +
Sbjct: 153 EESIYR 158
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 41.0 bits (95), Expect = 1e-04
Identities = 22/164 (13%), Positives = 37/164 (22%), Gaps = 18/164 (10%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG 272
I II + GKT+ + +F GI K
Sbjct: 8 ILIIGNSSVGKTSFLFRYAD--DSFTPAFVST------------VGIDFKVKTIYRNDKR 53
Query: 273 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVV 332
++ I DT G + +L+ D +K V
Sbjct: 54 IKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQV 113
Query: 333 NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 376
+ + ++ + L F SA
Sbjct: 114 LLVGNKCDMEDE----RVVSSERGRQLADHLGFEFFEASAKDNI 153
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 41.2 bits (95), Expect = 2e-04
Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 7/136 (5%)
Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
+ + + D GKT L LL +G +R Q I DS+ I K S
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLL--TGQYRDTQ---TSITDSSAIYKVNNNRGNSLTLIDLP 55
Query: 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 330
+ V ++ + D + ALK ++
Sbjct: 56 GHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVA--EFLYQVLIDSMALKNSPSLLI 113
Query: 331 VVNKIDRSNARPEWVV 346
NK D + A+ ++
Sbjct: 114 ACNKQDIAMAKSAKLI 129
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 40.1 bits (93), Expect = 3e-04
Identities = 22/168 (13%), Positives = 43/168 (25%), Gaps = 26/168 (15%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG 272
+ +I GKT ++ F GI + ++
Sbjct: 9 LLLIGDSGVGKTCVLFRFSE--DAFNSTFISTI------------GIDFKIRTIELDGKR 54
Query: 273 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG----PMPQTRFVTRKALKLGFKP 328
++ I DT G F ++L+ D + + +
Sbjct: 55 IKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEK 114
Query: 329 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 376
+++ NK D ++ R D + TSA
Sbjct: 115 MILGNKCDVNDKRQVSKERGEKLALD--------YGIKFMETSAKANI 154
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 39.4 bits (91), Expect = 5e-04
Identities = 31/195 (15%), Positives = 53/195 (27%), Gaps = 29/195 (14%)
Query: 205 DKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSK 264
D LT K I II GK++L+ TF G+ K
Sbjct: 3 DVLTTLK-ILIIGESGVGKSSLLLRFTD--DTFDPELAATI------------GVDFKVK 47
Query: 265 NCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL 324
S++ N ++ I DT G F V+L+ D
Sbjct: 48 TISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNE-LE 106
Query: 325 GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKAR 384
+ + + N + + + K + I SA
Sbjct: 107 TYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA---RKHSMLFIEASAKTCD-------- 155
Query: 385 QGNMIPLFEAILKYV 399
+ FE +++ +
Sbjct: 156 --GVQCAFEELVEKI 168
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 38.0 bits (87), Expect = 0.002
Identities = 27/168 (16%), Positives = 48/168 (28%), Gaps = 26/168 (15%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG 272
+I + GK+ L+ + F+ + N + SK ++
Sbjct: 8 FLVIGNAGTGKSCLLHQFIE--KKFKDDSNHTIGVE------------FGSKIINVGGKY 53
Query: 273 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP---- 328
++ I DT G F LL+ D ++
Sbjct: 54 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVI 113
Query: 329 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 376
I+ NK D R F + ++ + + TSAL G
Sbjct: 114 ILCGNKKDLDADREVT--------FLEASRFAQENELMFLETSALTGE 153
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 37.8 bits (86), Expect = 0.002
Identities = 31/190 (16%), Positives = 61/190 (32%), Gaps = 25/190 (13%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG 272
+AI+ + GK+TL+++LL + ++ RGI + + +
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAPISPR-------PQTTRKRLRGILTEGRRQIVFVDT 60
Query: 273 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVV 332
++ EV L+ V+ V+ ++D P P+ V R L K +++
Sbjct: 61 PGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILL 120
Query: 333 NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLF 392
A+ + E + SAL + L
Sbjct: 121 VGNKLDAAKYPEEAMKAYH--------ELLPEAEPRMLSALDER----------QVAELK 162
Query: 393 EAILKYVPVH 402
+L +P
Sbjct: 163 ADLLALMPEG 172
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 37.5 bits (86), Expect = 0.002
Identities = 27/167 (16%), Positives = 43/167 (25%), Gaps = 24/167 (14%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG 272
I +I + GKT L+ + G F Q G+ K I
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQ--GLFPPGQGAT------------IGVDFMIKTVEINGEK 53
Query: 273 TRINIIDTPGHADFGGEVERILSMVDNVLL---LIDAVEGPMPQTRFVTRKALKLGFKPI 329
++ I DT G F + + ++L + +
Sbjct: 54 VKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVIT 113
Query: 330 VVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 376
V+V R E + E D + TSA
Sbjct: 114 VLVGNKIDLAERREVS-------QQRAEEFSEAQDMYYLETSAKESD 153
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 37.0 bits (84), Expect = 0.003
Identities = 18/187 (9%), Positives = 49/187 (26%), Gaps = 28/187 (14%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG 272
+ ++ GKTT ++ + G F ++ + I ++ +
Sbjct: 5 LTLVGLQYSGKTTFVNVIAS--GQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRS 62
Query: 273 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVV 332
+ + + + + + K G +V+
Sbjct: 63 MWERYCRGVSAIVYMVDAADQEKIEAS-----------KNELHNLLDKPQLQGIPVLVLG 111
Query: 333 NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLF 392
NK D A E + +L + + + S N+
Sbjct: 112 NKRDLPGALDEKELIEKMNL-----SAIQDREICCYSISCKEKD----------NIDITL 156
Query: 393 EAILKYV 399
+ ++++
Sbjct: 157 QWLIQHS 163
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 36.7 bits (84), Expect = 0.004
Identities = 26/155 (16%), Positives = 45/155 (29%), Gaps = 19/155 (12%)
Query: 222 GKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTP 281
GK+ L+ + F + GI K I ++ I DT
Sbjct: 14 GKSCLLVRFVE--DKF------------NPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 59
Query: 282 GHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR 341
G F ++L+ D + K + + + +
Sbjct: 60 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 119
Query: 342 PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 376
VV A D+ A ++L P I +SA +
Sbjct: 120 ETRVVTA-----DQGEALAKELGIPFIESSAKNDD 149
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 36.5 bits (83), Expect = 0.005
Identities = 26/203 (12%), Positives = 58/203 (28%), Gaps = 39/203 (19%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSK-NCSIEY 270
++ ++ GK+TL+ + +I T+
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSSAKP----------------KIADYHFTTLVPNLGMVETD 46
Query: 271 NGTRINIIDTPGH----ADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF 326
+G + D PG G + L ++ +++ ++ + R L +
Sbjct: 47 DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQ 106
Query: 327 KPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE-----QLDFPVIYTSALHGYANENS 381
+ R RP+ +V D+ + E D+PV SA+
Sbjct: 107 ELS---EYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTRE----- 158
Query: 382 KARQGNMIPLFEAILKYVPVHKD 404
+ L + + +
Sbjct: 159 -----GLRELLFEVANQLENTPE 176
>d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus
thermophilus, EF-G-2 [TaxId: 274]}
Length = 77
Score = 34.1 bits (78), Expect = 0.006
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 536 QIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRV 594
++ L ++ + L++ + + + + G GELHL E ++ G E+ S P+V
Sbjct: 20 RLGEALRKLLEEDPSLKLERQEETGELL-LWGHGELHLATAKERLQDYGVEVEFSVPKV 77
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 34.4 bits (77), Expect = 0.027
Identities = 14/164 (8%), Positives = 41/164 (25%), Gaps = 8/164 (4%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 271
+A + GK++ ++ L Q R ++ + + + +
Sbjct: 18 EVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEV 77
Query: 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 331
+ ++ + + + L++ + + V+
Sbjct: 78 PEEMKRKWQRALGEYLEKRQSL------QGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVL 131
Query: 332 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHG 375
V + + + A D V S+L
Sbjct: 132 VLLTKADKLASGARKAQLNMVREAVLAFNG--DVQVETFSSLKK 173
>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 79
Score = 31.8 bits (72), Expect = 0.039
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 537 IKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE--GYELSVSRP 592
+ L K++ + + + + V+G GELHL I ++++ + G L +S P
Sbjct: 23 LVEGLKRLSKSDPCVLTYMS--ESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPP 78
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 33.6 bits (75), Expect = 0.047
Identities = 18/164 (10%), Positives = 42/164 (25%), Gaps = 19/164 (11%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 271
+ I + GK++L++ L + A I+ + + +
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGR----------EAAIVTDIAGTTRDVLREHIHIDGMPLH 52
Query: 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 331
+ +ER ++ ++ V+G + +
Sbjct: 53 IIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK 112
Query: 332 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHG 375
+ N D+ + E +I SA G
Sbjct: 113 LPITVVRN---------KADITGETLGMSEVNGHALIRLSARTG 147
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 33.5 bits (75), Expect = 0.049
Identities = 26/198 (13%), Positives = 60/198 (30%), Gaps = 41/198 (20%)
Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 271
++ ++ + + GK++L+ + R +
Sbjct: 3 DVGLVGYPNAGKSSLLAAMTRA---------------HPKIAPYPFTTLSPNLGVVEVSE 47
Query: 272 GTRINIIDTPGHADFGGEVERI-------LSMVDNVLLLIDAVEGPMPQTRFVTRKAL-- 322
R + D PG + E + + ++ +L ++DA + P+ + ++
Sbjct: 48 EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAY 107
Query: 323 KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSK 382
+ +++ + E V A D + V+ SAL G
Sbjct: 108 DPALLRRPSLVALNKVDLLEEEAVKALADAL-------AREGLAVLPVSALTGA------ 154
Query: 383 ARQGNMIPLFEAILKYVP 400
+ L EA+ V
Sbjct: 155 ----GLPALKEALHALVR 168
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 33.5 bits (76), Expect = 0.064
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 297 VDNVLLLIDAVEGPMPQTRFVTR---KALKLGFKPIVVVNKID 336
VD V+L++ P T + + A K + ++V+NK+D
Sbjct: 11 VDQVILVVTVKM-PETSTYIIDKFLVLAEKNELETVMVINKMD 52
>d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release
factor ERF2, post-G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 95
Score = 31.3 bits (71), Expect = 0.089
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Query: 424 GKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--L 481
G I G+I +G IK +V++M ++ I + + ++ GD V
Sbjct: 22 GTILEGKIEAGSIKKNSNVLVMPINQ----TLEVTAIYDEADEEI---SSSICGDQVRLR 74
Query: 482 ITGIEE-ICIGSTICDPSKP 500
+ G + + G + P
Sbjct: 75 VRGDDSDVQTGYVLTSTKNP 94
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 32.5 bits (73), Expect = 0.100
Identities = 29/178 (16%), Positives = 47/178 (26%), Gaps = 27/178 (15%)
Query: 222 GKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTP 281
GKT L+ G F + GI +K ++ ++ + DT
Sbjct: 18 GKTCLLVRFKD--GAF-----------LAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTA 64
Query: 282 GHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR 341
G F +LLL D + F +A +
Sbjct: 65 GQERFRSVTHAYYRDAHALLLLYD----VTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 120
Query: 342 PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 399
+ ++ P + TSA G N+ F AI K +
Sbjct: 121 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGL----------NVDLAFTAIAKEL 168
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 31.5 bits (70), Expect = 0.20
Identities = 29/192 (15%), Positives = 56/192 (29%), Gaps = 39/192 (20%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG 272
I ++ + GKTTL+ L + + T S++ G
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHITP-------------------TQGFNIKSVQSQG 59
Query: 273 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQ-----TRFVTRKALKLGFK 327
++N+ D G D ++ +ID+ + + + +
Sbjct: 60 FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP 119
Query: 328 PIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGN 387
++ NK D A P + +L T + + SAL G
Sbjct: 120 VLIFANKQDLLTAAPASEIAEGLNL-----HTIRDRVWQIQSCSALTGE----------G 164
Query: 388 MIPLFEAILKYV 399
+ + K V
Sbjct: 165 VQDGMNWVCKNV 176
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 32.1 bits (72), Expect = 0.24
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 289 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNARPEWVVD 347
EV L ++D V L+DA + + L KP I+++NK D++ V
Sbjct: 8 EVTEKLKLIDIVYELVDARIPMSSRNPMIED---ILKNKPRIMLLNKADKA---DAAVTQ 61
Query: 348 ATFDLFDKL 356
+ F+
Sbjct: 62 QWKEHFENQ 70
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 31.0 bits (69), Expect = 0.35
Identities = 24/195 (12%), Positives = 55/195 (28%), Gaps = 28/195 (14%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG 272
+ +I + GK+ L+ T+ +N+ G+ K ++
Sbjct: 9 LLLIGNSGVGKSCLLLRFSD--DTY------------TNDYISTIGVDFKIKTVELDGKT 54
Query: 273 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVV 332
++ I DT G F ++++ D + + + + V+
Sbjct: 55 VKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK 114
Query: 333 NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLF 392
+ + +D + P + TSAL N+ F
Sbjct: 115 LLVGNKCDLKDK----RVVEYDVAKEFADANKMPFLETSALDST----------NVEDAF 160
Query: 393 EAILKYVPVHKDNSN 407
+ + + N
Sbjct: 161 LTMARQIKESMSQQN 175
>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus
thermophilus [TaxId: 274]}
Length = 75
Score = 29.0 bits (65), Expect = 0.42
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 565 VSGRGELHLTILIENMRRE 583
+SG GEL L I+++ ++RE
Sbjct: 48 ISGMGELSLEIIVDRLKRE 66
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 30.9 bits (69), Expect = 0.43
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 297 VDNVLLLIDAVEGPMPQTRFVTR---KALKLGFKPIVVVNKID 336
VD +L+ AV+ P T + R +PI+ + K+D
Sbjct: 11 VDQAVLVFSAVQ-PSFSTALLDRFLVLVEANDIQPIICITKMD 52
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 28.6 bits (62), Expect = 2.0
Identities = 23/187 (12%), Positives = 48/187 (25%), Gaps = 19/187 (10%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG 272
IA+ + GK++ I+ L+ + R + + I + +
Sbjct: 26 IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVS 85
Query: 273 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVV 332
+ E + ++V +D P + G IV+
Sbjct: 86 KSEREAWGRMIETYITTREELKAVVQI----VDLRHAPSNDDVQMYEFLKYYGIPVIVIA 141
Query: 333 NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLF 392
K D+ + L + +I S+ +
Sbjct: 142 TKADK--IPKGKWDKHAKVVRQTL---NIDPEDELILFSSETKK----------GKDEAW 186
Query: 393 EAILKYV 399
AI K +
Sbjct: 187 GAIKKMI 193
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 28.1 bits (61), Expect = 2.5
Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 29/168 (17%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG 272
+ ++ + GKTT++ + E T+ ++E+ G
Sbjct: 5 LLMLGLDNAGKTTILKKF-------------------NGEDVDTISPTLGFNIKTLEHRG 45
Query: 273 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQT-----RFVTRKALKLGFK 327
++NI D G D ++ ++D+ + Q + + + G
Sbjct: 46 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 105
Query: 328 PIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHG 375
++ NK D A + +L + + SA+ G
Sbjct: 106 LLIFANKQDLPGALSCNAIQEALELDSI-----RSHHWRIQGCSAVTG 148
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 27.7 bits (60), Expect = 3.9
Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 28/165 (16%)
Query: 222 GKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTP 281
GKT L +G F + E G+ + I+ +I + DT
Sbjct: 14 GKTCLTYRFC--AGRF------------PDRTEATIGVDFRERAVDIDGERIKIQLWDTA 59
Query: 282 GHADFGGEVERILSMVDNVLLLI------DAVEGPMPQTRFVTRKALKLGFKPIVVVNKI 335
G F + + + ++ + + + L I+V NK
Sbjct: 60 GQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKC 119
Query: 336 DRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANEN 380
D +A A K + P+ TSA + N++
Sbjct: 120 DLRSAIQVPTDLA-----QKFA---DTHSMPLFETSAKNPNDNDH 156
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 27.9 bits (61), Expect = 4.1
Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 34/156 (21%)
Query: 196 LKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEK 255
L L++ ++ LT I ++ GK++ ++ ++ + I
Sbjct: 22 LGNLKQEDVNSLT----ILVMGKGGVGKSSTVNSIIGE---------------RVVSISP 62
Query: 256 ERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMV---------DNVLLLIDA 306
+ S G +NIIDTPG + G + L+++ D +L +
Sbjct: 63 FQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRL 122
Query: 307 VEGPMPQTRFVTRKALKLGFKP------IVVVNKID 336
+ + KA+ F IV +
Sbjct: 123 DAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQ 158
>d2eyqa6 d.315.1.1 (A:990-1147) Transcription-repair coupling
factor, TRCF, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 158
Score = 27.3 bits (60), Expect = 4.8
Identities = 12/68 (17%), Positives = 24/68 (35%)
Query: 57 FGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHG 116
FG + L + + + LGI G+ +G +I+F + + + +L
Sbjct: 61 FGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQ 120
Query: 117 KISQIPPM 124
P
Sbjct: 121 HYRLDGPT 128
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.3 bits (59), Expect = 5.5
Identities = 27/170 (15%), Positives = 51/170 (30%), Gaps = 26/170 (15%)
Query: 213 IAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG 272
+ + + GKTTL+ L N+ T + +
Sbjct: 3 LLFLGLDNAGKTTLLHMLK-------------------NDRLATLQPTWHPTSEELAIGN 43
Query: 273 TRINIIDTPGHADFGGEVERILSMVDNVLLLID-----AVEGPMPQTRFVTRKALKLGFK 327
+ D GH + V+ ++ L+D + + + A
Sbjct: 44 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP 103
Query: 328 PIVVVNKIDRSNARPEWVVDATFDLFDKLCAT--EEQLDFPVIYTSALHG 375
+++ NKID NA E + + L + + E Q V S +
Sbjct: 104 FVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMR 153
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 27.5 bits (60), Expect = 7.2
Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 26/171 (15%)
Query: 199 LRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLL------RQSGTFRKNQNINARIMDSNE 252
IG + IA++ GK++++++ + R SG + + + + E
Sbjct: 15 FSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTE 74
Query: 253 -----IEKERGITIFSKNCSI------EYNGTRINIIDTPGHADFGGEVERILSMVDNVL 301
K + T F + GT I P + L++VD
Sbjct: 75 YAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPG 134
Query: 302 LLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDL 352
+ V P F R +++ + + N V A DL
Sbjct: 135 MTKVPVGDQPPDIEFQIRD---------MLMQFVTKENCLILAVSPANSDL 176
>d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 137
Score = 26.5 bits (58), Expect = 8.7
Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 11/89 (12%)
Query: 59 EATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKI 118
EA + + + +Y + I II ++ +I+ L K
Sbjct: 47 EAVELRDG--DKSRYGGLGTQKAVDNVNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKG 104
Query: 119 SQIPPM---------YSALKYKGIPLYKY 138
+A Y IPLY Y
Sbjct: 105 KLGANAILGVSIAVARAAADYLEIPLYSY 133
>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54)
N-terminal domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 239
Score = 26.9 bits (59), Expect = 8.8
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 440 QDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGI 485
Q + + ++ + QI V L+ LV+ GDIV +TG
Sbjct: 172 QTLKLQEPLENLSGGEQPRQITVV--LEDDLVDTLTPGDIVRVTGT 215
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 26.8 bits (59), Expect = 9.0
Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 7/103 (6%)
Query: 213 IAIIAHVDHGKTTLIDHLLR----QSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSI 268
IA GK+T+ L R +G + I + + I S++ +I
Sbjct: 31 IAFAGPSGGGKSTIFSLLERFYQPTAGEITID---GQPIDNISLENWRSQIGFVSQDSAI 87
Query: 269 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPM 311
R N+ ++ ++L + + + +
Sbjct: 88 MAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLN 130
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.140 0.405
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,069,439
Number of extensions: 157455
Number of successful extensions: 539
Number of sequences better than 10.0: 1
Number of HSP's gapped: 489
Number of HSP's successfully gapped: 80
Length of query: 793
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 700
Effective length of database: 1,130,706
Effective search space: 791494200
Effective search space used: 791494200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.4 bits)