BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17603
(591 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LT7|A Chain A, Oxidized Homo Sapiens Betaine-Homocysteine
S-Methyltransferase In Complex With Four Sm(Iii) Ions
pdb|1LT7|B Chain B, Oxidized Homo Sapiens Betaine-Homocysteine
S-Methyltransferase In Complex With Four Sm(Iii) Ions
pdb|1LT8|A Chain A, Reduced Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With
S-(Delta-Carboxybutyl)-L- Homocysteine
pdb|1LT8|B Chain B, Reduced Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With
S-(Delta-Carboxybutyl)-L- Homocysteine
Length = 406
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 73/183 (39%), Gaps = 38/183 (20%)
Query: 8 DGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGG 67
DGGF L + P W+ +AV Q HR+F++AG++++ T ++ AS
Sbjct: 26 DGGFVFALEKR--GYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASED- 81
Query: 68 FMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRD 127
L+ +Y L K S V EA A AR +D+ D L+AG V + L
Sbjct: 82 -----KLENRGNYVLEKISGQEVNEAA---ADIARQVADE--GDALVAGGVSQTPSYLSA 131
Query: 128 GSEYR---------------------GDYVEHVSEATMAEWHRLITDDPARDILIAGSVG 166
SE +Y EHV EA A + + P + ++G
Sbjct: 132 KSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKPVAATM---AIG 188
Query: 167 PYG 169
P G
Sbjct: 189 PEG 191
>pdb|1Q85|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex, Se-Met)
pdb|1Q85|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex, Se-Met)
pdb|1Q8A|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+:l-Hcy Complex, Se-Met)
pdb|1Q8A|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+:l-Hcy Complex, Se-Met)
Length = 566
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 4 VKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQA 63
V L+DG + ++ Y G+ A D V++ HR +I++G+D+++TN++ A
Sbjct: 15 VLLLDGAYGTEFXKY------GYDDLPEELNIKAPDVVLKVHRSYIESGSDVILTNTFGA 68
Query: 64 S 64
+
Sbjct: 69 T 69
>pdb|1Q7M|A Chain A, Cobalamin-Dependent Methionine Synthase (Meth) From
Thermotoga Maritima (Oxidized, Monoclinic)
pdb|1Q7M|B Chain B, Cobalamin-Dependent Methionine Synthase (Meth) From
Thermotoga Maritima (Oxidized, Monoclinic)
pdb|1Q7Q|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From T.
Maritima (Oxidized, Orthorhombic)
pdb|1Q7Q|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From T.
Maritima (Oxidized, Orthorhombic)
pdb|1Q7Z|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex)
pdb|1Q7Z|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex)
pdb|1Q8J|A Chain A, Cobalamin-dependent Methionine Synthase (1-566) From
Thermotoga Maritima (cd2+, Hcy, Methyltetrahydrofolate
Complex)
pdb|1Q8J|B Chain B, Cobalamin-dependent Methionine Synthase (1-566) From
Thermotoga Maritima (cd2+, Hcy, Methyltetrahydrofolate
Complex)
pdb|3BOF|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+ And
Homocysteine
pdb|3BOF|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+ And
Homocysteine
pdb|3BOL|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+
pdb|3BOL|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+
Length = 566
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 4 VKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQA 63
V L+DG + ++ Y G+ A D V++ HR +I++G+D+++TN++ A
Sbjct: 15 VLLLDGAYGTEFMKY------GYDDLPEELNIKAPDVVLKVHRSYIESGSDVILTNTFGA 68
Query: 64 S 64
+
Sbjct: 69 T 69
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 35.4 bits (80), Expect = 0.090, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 116 GSVGPYGASLRDGSEYRGDYVEH-VSEATMAEWHRLITDDPARDILIAGSVGPYGASLRD 174
GS G G RD S+ +G ++ + ++ M +I D + L SV P G + +D
Sbjct: 1 GSSGSSGLFTRDASQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQD 60
Query: 175 GSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAI-ETIPASKEAQM-LCR 226
G GD + +++E + L AD++ + +++P + + LCR
Sbjct: 61 GKMETGDVIVYINEVCV----------LGHTHADVVKLFQSVPIGQSVNLVLCR 104
>pdb|1UMY|A Chain A, Bhmt From Rat Liver
pdb|1UMY|B Chain B, Bhmt From Rat Liver
pdb|1UMY|C Chain C, Bhmt From Rat Liver
pdb|1UMY|D Chain D, Bhmt From Rat Liver
Length = 407
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 72/189 (38%), Gaps = 38/189 (20%)
Query: 2 ANVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSY 61
V + DGGF L + P W+ +AV Q HR+F++AG++++ T ++
Sbjct: 20 GEVVIGDGGFVFALEKR--GYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTF 76
Query: 62 QASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVG-- 119
AS L+ +Y K S V EA AR +D+ D L+AG V
Sbjct: 77 YASED------KLENRGNYVAEKISGQKVNEAA---CDIARQVADE--GDALVAGGVSQT 125
Query: 120 PYGASLRDGSEYR-------------------GDYVEHVSEATMAEWHRLITDDPARDIL 160
P S + +E + +Y EHV EA W + I
Sbjct: 126 PSYLSCKSETEVKKIFHQQLEVFMKKNVDFLIAEYFEHVEEAV---WAVEALKTSGKPIA 182
Query: 161 IAGSVGPYG 169
+GP G
Sbjct: 183 ATMCIGPEG 191
>pdb|3MWF|A Chain A, Crystal Structure Of Staphylococcus Aureus Sira Complexed
With Staphyloferrin B
Length = 298
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 285 LIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTEN 343
+I+ E+IPL+ + +HI +++ P +K+A ++ + EW + K W + N
Sbjct: 206 IIQLTSKESIPLM----NADHIFVVKSDPNAKDAALVKKTESEWTSSKEWKNLDAVKNN 260
>pdb|3MWG|A Chain A, Crystal Structure Of Staphylococcus Aureus Sira
pdb|3MWG|B Chain B, Crystal Structure Of Staphylococcus Aureus Sira
Length = 279
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 285 LIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTEN 343
+I+ E+IPL + +HI +++ P +K+A ++ + EW + K W + N
Sbjct: 187 IIQLTSKESIPLX----NADHIFVVKSDPNAKDAALVKKTESEWTSSKEWKNLDAVKNN 241
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Query: 484 GVALVGG--CCRTYAEDTLHMKHRLDDWDDKHISNGESFTQVARTCYNMNPDQLIAVGVN 541
GV VGG + DT+ MK L DW D+H + + + CY+ P V V
Sbjct: 245 GVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCAT------LLKNCYDALPAHGKVVLVQ 298
Query: 542 CVRPLMVSPLIEQ-----LKTENIPLVVYPNSGERYD 573
C+ P V+P + I L P ERY+
Sbjct: 299 CILP--VNPEANPSSQGVFHVDMIMLAHNPGGRERYE 333
>pdb|3PP2|A Chain A, Crystal Structure Of The Pleckstrin Homology Domain Of
Arhgap27
pdb|3PP2|B Chain B, Crystal Structure Of The Pleckstrin Homology Domain Of
Arhgap27
Length = 124
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 173 RDGSEYRGDYVEHVSEATMAEWHRPRIQALVE 204
RDGSEY ++H SEA ++ WH+ Q + E
Sbjct: 96 RDGSEY---LIQHDSEAIISTWHKAIAQGIQE 124
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Query: 126 RDGSEYRGDYVEHVSEATMAEWHRLI 151
RDGSEY ++H SEA ++ WH+ I
Sbjct: 96 RDGSEY---LIQHDSEAIISTWHKAI 118
>pdb|1PN3|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PN3|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PNV|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
pdb|1PNV|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
Length = 404
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 17/100 (17%)
Query: 470 CEPVDKYVTDWLDEGVALVGGC--------------CRTYAEDTLHMKHRLDDWDDKHIS 515
E V + V +W D+ A + GC R+ AE L + +R H+
Sbjct: 72 AEVVTEVVAEWFDKVPAAIEGCDAVVTTGLLPAAVAVRSMAEK-LGIPYRYTVLSPDHLP 130
Query: 516 NGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQL 555
+ +S Q R YN D+L VN R + P +E L
Sbjct: 131 SEQS--QAERDMYNQGADRLFGDAVNSHRASIGLPPVEHL 168
>pdb|3H4I|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products
pdb|3H4T|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products - Gtfah1 In Complex With Udp-2f-Glc
Length = 404
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 17/100 (17%)
Query: 470 CEPVDKYVTDWLDEGVALVGGC--------------CRTYAEDTLHMKHRLDDWDDKHIS 515
E V + V +W D+ A + GC R+ AE L + +R H+
Sbjct: 72 AEVVTEVVAEWFDKVPAAIEGCDAVVTTGLLPAAVAVRSMAEK-LGIPYRYTVLSPDHLP 130
Query: 516 NGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQL 555
+ +S Q R YN D+L VN R + P +E L
Sbjct: 131 SEQS--QAERDMYNQGADRLFGDAVNSHRASIGLPPVEHL 168
>pdb|1YDU|A Chain A, Solution Nmr Structure Of At5g01610, An Arabidopsis
Thaliana Protein Containing Duf538 Domain
Length = 170
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 540 VNCVRPLMVSPLIEQLKTENIPLVVYPNSGERYDF 574
VN ++ M PL E LK ++P+ ++P Y+F
Sbjct: 43 VNKIKGKMQKPLPELLKEYDLPIGIFPGDATNYEF 77
>pdb|3UTN|X Chain X, Crystal Structure Of Tum1 Protein From Saccharomyces
Cerevisiae
Length = 327
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 79/203 (38%), Gaps = 29/203 (14%)
Query: 9 GGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFI------KAGADIVMTNSYQ 62
G FSS + ++ GHP Y L +R+F K A S+
Sbjct: 123 GNFSSPRCAWTLGVM-GHP--KVYLLNN-----FNQYREFKYPLDSSKVAAFSPYPKSHY 174
Query: 63 ASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIA--------LEATHARIRSDDPARDILI 114
S F + +DY+ +QL+KS + K+ A E T RSD P+ I
Sbjct: 175 ESSESFQDKEIVDYEEMFQLVKSG-ELAKKFNAFDARSLGRFEGTEPEPRSDIPSGHIPG 233
Query: 115 AGSVGPYGASLRDGSEY---RGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGAS 171
+ PYG+ L ++ G+ + E + ++H T DP++ + + G G
Sbjct: 234 TQPL-PYGSLLDPETKTYPEAGEAIHATLEKALKDFH--CTLDPSKPTICSCGTGVSGVI 290
Query: 172 LRDGSEYRGDYVEHVSEATMAEW 194
++ E G + + + EW
Sbjct: 291 IKTALELAGVPNVRLYDGSWTEW 313
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 88 DYVKEAIALEATHARIRSDDPARDILIAGS-VGPYGASLRD 127
DYVKEA+ E H + D R+ L AG + PY ++ D
Sbjct: 282 DYVKEAVGAEVDHYESCNFDINRNFLFAGDWMKPYHTAVTD 322
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 88 DYVKEAIALEATHARIRSDDPARDILIAGS-VGPYGASLRD 127
DYVKEA+ E H + D R+ L AG + PY ++ D
Sbjct: 282 DYVKEAVGAEVDHYESCNFDINRNFLFAGDWMKPYHTAVTD 322
>pdb|1LRT|A Chain A, Crystal Structure Of Ternary Complex Of Tritrichomonas
Foetus Inosine-5'-Monophosphate Dehydrogenase:
Structural Characterization Of Nad+ Site In Microbial
Enzyme
pdb|1LRT|B Chain B, Crystal Structure Of Ternary Complex Of Tritrichomonas
Foetus Inosine-5'-Monophosphate Dehydrogenase:
Structural Characterization Of Nad+ Site In Microbial
Enzyme
pdb|1LRT|C Chain C, Crystal Structure Of Ternary Complex Of Tritrichomonas
Foetus Inosine-5'-Monophosphate Dehydrogenase:
Structural Characterization Of Nad+ Site In Microbial
Enzyme
pdb|1LRT|D Chain D, Crystal Structure Of Ternary Complex Of Tritrichomonas
Foetus Inosine-5'-Monophosphate Dehydrogenase:
Structural Characterization Of Nad+ Site In Microbial
Enzyme
Length = 376
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 196 RPRIQALVEAGADILAIETIPASKEAQML 224
R R+ ALVEAGAD+L I++ E Q +
Sbjct: 117 RERVPALVEAGADVLCIDSSDGFSEWQKI 145
>pdb|1ME7|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp And Moa Bound
pdb|1MEI|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Mycophenolic Acid
Bound
pdb|1MEW|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Nad Bound
pdb|1AK5|A Chain A, Inosine Monophosphate Dehydrogenase (impdh) From
Tritrichomonas Foetus
Length = 503
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 196 RPRIQALVEAGADILAIETIPASKEAQML 224
R R+ ALVEAGAD+L I++ E Q +
Sbjct: 244 RERVPALVEAGADVLCIDSSDGFSEWQKI 272
>pdb|1ME8|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp Bound
pdb|1ME9|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp Bound
pdb|1MEH|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp And Moa Bound
Length = 503
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 196 RPRIQALVEAGADILAIETIPASKEAQML 224
R R+ ALVEAGAD+L I++ E Q +
Sbjct: 244 RERVPALVEAGADVLCIDSSDGFSEWQKI 272
>pdb|1PVN|A Chain A, The Crystal Structure Of The Complex Between Imp
Dehydrogenase Catalytic Domain And A Transition State
Analogue Mzp
pdb|1PVN|B Chain B, The Crystal Structure Of The Complex Between Imp
Dehydrogenase Catalytic Domain And A Transition State
Analogue Mzp
pdb|1PVN|C Chain C, The Crystal Structure Of The Complex Between Imp
Dehydrogenase Catalytic Domain And A Transition State
Analogue Mzp
pdb|1PVN|D Chain D, The Crystal Structure Of The Complex Between Imp
Dehydrogenase Catalytic Domain And A Transition State
Analogue Mzp
Length = 376
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 196 RPRIQALVEAGADILAIETIPASKEAQML 224
R R+ ALVEAGAD+L I++ E Q +
Sbjct: 117 RERVPALVEAGADVLCIDSSDGFSEWQKI 145
>pdb|2FOY|A Chain A, Human Carbonic Anhydrase I Complexed With A Two-Prong
Inhibitor
pdb|2FOY|B Chain B, Human Carbonic Anhydrase I Complexed With A Two-Prong
Inhibitor
pdb|2FW4|A Chain A, Carbonic Anhydrase Activators. The First X-ray
Crystallographic Study Of An Activator Of Isoform I,
Structure With L-histidine.
pdb|2FW4|B Chain B, Carbonic Anhydrase Activators. The First X-ray
Crystallographic Study Of An Activator Of Isoform I,
Structure With L-histidine.
pdb|2NMX|A Chain A, Structure Of Inhibitor Binding To Carbonic Anhydrase I
pdb|2NMX|B Chain B, Structure Of Inhibitor Binding To Carbonic Anhydrase I
pdb|2NN1|A Chain A, Structure Of Inhibitor Binding To Carbonic Anhydrase I
pdb|2NN1|B Chain B, Structure Of Inhibitor Binding To Carbonic Anhydrase I
pdb|2NN7|A Chain A, Structure Of Inhibitor Binding To Carbonic Anhydrase I
pdb|2NN7|B Chain B, Structure Of Inhibitor Binding To Carbonic Anhydrase I
pdb|1AZM|A Chain A, Drug-Protein Interactions: Structure Of Sulfonamide Drug
Complexed With Human Carbonic Anhydrase I
pdb|1BZM|A Chain A, Drug-Protein Interactions: Structure Of Sulfonamide Drug
Complexed With Human Carbonic Anhydrase I
pdb|1CZM|A Chain A, Drug-Protein Interactions: Structure Of Sulfonamide Drug
Complexed With Human Carbonic Anhydrase I
pdb|1HCB|A Chain A, Enzyme-Substrate Interactions: Structure Of Human Carbonic
Anhydrase I Complexed With Bicarbonate
pdb|1HUG|A Chain A, Differences In Anionic Inhibition Of Human Carbonic
Anhydrase I Revealed From The Structures Of Iodide And
Gold Cyanide Inhibitor Complexes
pdb|1HUH|A Chain A, Differences In Anionic Inhibition Of Human Carbonic
Anhydrase I Revealed From The Structures Of Iodide And
Gold Cyanide Inhibitor Complexes
pdb|3LXE|A Chain A, Human Carbonic Anhydrase I In Complex With Topiramate
pdb|3LXE|B Chain B, Human Carbonic Anhydrase I In Complex With Topiramate
Length = 260
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 168 YGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAG--ADILAI 212
+G++ GSE+ D V++ +E +A W+ + +L EA AD LA+
Sbjct: 97 WGSTNEHGSEHTVDGVKYSAELHVAHWNSAKYSSLAEAASKADGLAV 143
>pdb|2IT4|A Chain A, X Ray Structure Of The Complex Between Carbonic Anhydrase
I And The Phosphonate Antiviral Drug Foscarnet
pdb|2IT4|B Chain B, X Ray Structure Of The Complex Between Carbonic Anhydrase
I And The Phosphonate Antiviral Drug Foscarnet
Length = 256
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 168 YGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAG--ADILAI 212
+G++ GSE+ D V++ +E +A W+ + +L EA AD LA+
Sbjct: 93 WGSTNEHGSEHTVDGVKYSAELHVAHWNSAKYSSLAEAASKADGLAV 139
>pdb|1CRM|A Chain A, Structure And Function Of Carbonic Anhydrases
pdb|2CAB|A Chain A, Structure, Refinement And Function Of Carbonic Anhydrase
Isozymes. Refinement Of Human Carbonic Anhydrase I
Length = 260
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 168 YGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAG--ADILAI 212
+G++ GSE+ D V++ +E +A W+ + +L EA AD LA+
Sbjct: 97 WGSTNEHGSEHTVDGVKYSAELHVAHWNSAKYSSLAEAASKADGLAV 143
>pdb|1J9W|A Chain A, Solution Structure Of The Cai Michigan 1 Variant
pdb|1J9W|B Chain B, Solution Structure Of The Cai Michigan 1 Variant
pdb|1JV0|A Chain A, The Crystal Structure Of The Zinc(Ii) Adduct Of The Cai
Michigan 1 Variant
pdb|1JV0|B Chain B, The Crystal Structure Of The Zinc(Ii) Adduct Of The Cai
Michigan 1 Variant
Length = 260
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 168 YGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAG--ADILAI 212
+G++ GSE+ D V++ +E +A W+ + +L EA AD LA+
Sbjct: 97 WGSTNEHGSEHTVDGVKYSAELHVAHWNSAKYSSLAEAASKADGLAV 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,492,482
Number of Sequences: 62578
Number of extensions: 855590
Number of successful extensions: 2094
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2058
Number of HSP's gapped (non-prelim): 51
length of query: 591
length of database: 14,973,337
effective HSP length: 104
effective length of query: 487
effective length of database: 8,465,225
effective search space: 4122564575
effective search space used: 4122564575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)