Query psy17603
Match_columns 591
No_of_seqs 399 out of 2392
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 18:18:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02489 homocysteine S-methyl 100.0 1.4E-67 3E-72 553.1 35.4 311 2-407 20-333 (335)
2 PRK09485 mmuM homocysteine met 100.0 3.2E-66 7E-71 537.7 35.3 291 3-406 12-303 (304)
3 KOG1579|consensus 100.0 6.8E-66 1.5E-70 517.0 31.0 296 3-408 18-315 (317)
4 COG2040 MHT1 Homocysteine/sele 100.0 4.6E-66 1E-70 510.6 29.3 292 1-408 7-299 (300)
5 PRK07534 methionine synthase I 100.0 2E-59 4.3E-64 490.9 34.2 283 3-410 13-298 (336)
6 PF02574 S-methyl_trans: Homoc 100.0 9E-63 2E-67 513.5 7.6 290 4-406 1-304 (305)
7 COG0646 MetH Methionine syntha 100.0 1.7E-59 3.8E-64 465.9 30.1 284 2-406 14-310 (311)
8 PRK09490 metH B12-dependent me 100.0 3E-56 6.6E-61 522.7 40.3 295 2-410 17-333 (1229)
9 TIGR02082 metH 5-methyltetrahy 100.0 1.6E-55 3.4E-60 518.6 40.7 293 2-410 3-317 (1178)
10 PRK08645 bifunctional homocyst 100.0 3.2E-55 6.9E-60 494.0 32.3 280 2-410 10-290 (612)
11 COG0646 MetH Methionine syntha 100.0 1.3E-35 2.8E-40 295.6 19.6 265 157-507 14-310 (311)
12 PRK09490 metH B12-dependent me 100.0 7.1E-29 1.5E-33 292.4 19.3 247 186-509 62-331 (1229)
13 PRK09485 mmuM homocysteine met 100.0 2.7E-27 5.8E-32 246.3 20.0 229 187-507 44-303 (304)
14 TIGR02082 metH 5-methyltetrahy 100.0 2E-27 4.4E-32 281.1 20.6 246 186-509 47-315 (1178)
15 PLN02489 homocysteine S-methyl 99.9 4E-27 8.6E-32 247.5 19.7 240 187-507 53-332 (335)
16 PRK07534 methionine synthase I 99.9 4.2E-27 9.2E-32 247.0 19.8 233 186-510 42-297 (336)
17 PRK08645 bifunctional homocyst 99.9 4E-25 8.7E-30 249.9 19.7 231 186-509 40-288 (612)
18 PF02574 S-methyl_trans: Homoc 99.9 4.7E-26 1E-30 237.5 10.9 241 187-507 39-304 (305)
19 KOG1579|consensus 99.9 9.1E-23 2E-27 205.9 14.7 239 187-509 51-315 (317)
20 COG2040 MHT1 Homocysteine/sele 99.9 1.5E-23 3.3E-28 208.4 8.5 152 423-576 30-250 (300)
21 PRK15063 isocitrate lyase; Pro 95.1 0.57 1.2E-05 50.9 15.0 80 282-390 264-346 (428)
22 cd00377 ICL_PEPM Members of th 92.6 2.1 4.5E-05 43.5 12.8 37 299-352 169-205 (243)
23 cd00377 ICL_PEPM Members of th 90.9 5.6 0.00012 40.3 13.8 42 195-240 162-203 (243)
24 cd00945 Aldolase_Class_I Class 90.2 15 0.00033 34.9 15.8 52 343-405 113-169 (201)
25 PRK06852 aldolase; Validated 90.1 18 0.00038 38.0 16.9 145 199-403 65-226 (304)
26 PF00682 HMGL-like: HMGL-like 89.1 24 0.00052 35.1 16.8 165 186-410 11-180 (237)
27 CHL00200 trpA tryptophan synth 89.1 20 0.00042 36.9 16.2 172 344-554 15-223 (263)
28 TIGR00262 trpA tryptophan synt 88.3 22 0.00048 36.3 16.0 171 344-554 10-219 (256)
29 TIGR02320 PEP_mutase phosphoen 88.2 19 0.00041 37.5 15.5 28 299-326 178-206 (285)
30 TIGR00683 nanA N-acetylneurami 87.9 27 0.00059 36.2 16.7 77 185-274 17-102 (290)
31 PRK08195 4-hyroxy-2-oxovalerat 87.6 43 0.00092 35.7 21.3 43 367-409 141-186 (337)
32 TIGR00674 dapA dihydrodipicoli 86.9 26 0.00056 36.2 15.8 77 185-274 15-99 (285)
33 cd02810 DHOD_DHPD_FMN Dihydroo 86.5 11 0.00025 38.7 13.0 103 232-393 97-199 (289)
34 cd00465 URO-D_CIMS_like The UR 86.2 26 0.00056 36.2 15.6 38 368-405 259-304 (306)
35 cd00408 DHDPS-like Dihydrodipi 86.0 35 0.00077 34.9 16.3 78 185-275 14-99 (281)
36 PLN02274 inosine-5'-monophosph 85.6 20 0.00043 40.5 15.0 59 156-238 234-294 (505)
37 PRK05458 guanosine 5'-monophos 85.4 22 0.00047 37.8 14.4 43 196-238 99-145 (326)
38 TIGR02317 prpB methylisocitrat 85.2 15 0.00032 38.2 12.8 27 298-324 169-195 (285)
39 COG2513 PrpB PEP phosphonomuta 84.8 1.3 2.7E-05 45.8 4.6 44 195-242 168-211 (289)
40 TIGR00737 nifR3_yhdG putative 84.6 16 0.00034 38.6 13.0 69 203-280 28-100 (319)
41 PRK06252 methylcobalamin:coenz 84.2 22 0.00048 37.5 14.1 47 199-252 246-292 (339)
42 cd04740 DHOD_1B_like Dihydroor 84.2 32 0.0007 35.6 15.1 17 201-217 28-45 (296)
43 TIGR01463 mtaA_cmuA methyltran 84.1 32 0.00068 36.4 15.2 70 199-276 248-317 (340)
44 TIGR03217 4OH_2_O_val_ald 4-hy 83.6 65 0.0014 34.3 18.5 42 367-408 140-184 (333)
45 PLN02321 2-isopropylmalate syn 83.4 96 0.0021 36.0 20.6 167 185-409 104-282 (632)
46 COG2513 PrpB PEP phosphonomuta 83.0 11 0.00023 39.1 10.4 38 282-326 165-202 (289)
47 COG0329 DapA Dihydrodipicolina 82.6 39 0.00086 35.3 14.9 78 185-275 21-106 (299)
48 COG3010 NanE Putative N-acetyl 82.3 18 0.00038 35.7 11.0 34 371-404 86-122 (229)
49 cd03174 DRE_TIM_metallolyase D 82.0 60 0.0013 32.6 19.8 43 367-409 143-188 (265)
50 PRK05286 dihydroorotate dehydr 81.9 33 0.00072 36.6 14.3 24 370-393 225-248 (344)
51 PF01208 URO-D: Uroporphyrinog 81.6 25 0.00054 37.1 13.3 71 198-276 248-322 (343)
52 TIGR03249 KdgD 5-dehydro-4-deo 81.4 66 0.0014 33.4 16.1 76 185-274 22-105 (296)
53 cd00951 KDGDH 5-dehydro-4-deox 80.9 73 0.0016 33.0 16.5 76 185-274 17-100 (289)
54 PRK07565 dihydroorotate dehydr 80.9 17 0.00037 38.6 11.6 52 218-278 86-137 (334)
55 PRK03620 5-dehydro-4-deoxygluc 80.8 73 0.0016 33.3 16.2 76 185-274 24-107 (303)
56 PRK00311 panB 3-methyl-2-oxobu 80.6 16 0.00034 37.6 10.8 88 201-325 102-195 (264)
57 PF01729 QRPTase_C: Quinolinat 80.6 10 0.00023 36.2 8.9 59 254-328 66-124 (169)
58 cd03307 Mta_CmuA_like MtaA_Cmu 80.6 54 0.0012 34.5 15.3 40 366-405 281-324 (326)
59 TIGR01037 pyrD_sub1_fam dihydr 80.5 47 0.001 34.5 14.6 21 371-391 170-190 (300)
60 TIGR02319 CPEP_Pphonmut carbox 80.4 32 0.0007 35.9 13.1 27 299-325 174-200 (294)
61 PRK13523 NADPH dehydrogenase N 80.2 75 0.0016 33.8 16.2 170 188-393 36-250 (337)
62 cd04740 DHOD_1B_like Dihydroor 80.2 71 0.0015 33.0 15.9 73 195-277 104-189 (296)
63 PRK12581 oxaloacetate decarbox 79.8 68 0.0015 35.8 16.0 125 251-408 68-204 (468)
64 cd00950 DHDPS Dihydrodipicolin 79.1 77 0.0017 32.5 15.6 77 185-274 17-101 (284)
65 cd08205 RuBisCO_IV_RLP Ribulos 79.0 54 0.0012 35.4 14.8 79 185-275 142-230 (367)
66 PRK07259 dihydroorotate dehydr 78.7 66 0.0014 33.4 15.1 48 314-389 141-188 (301)
67 PTZ00314 inosine-5'-monophosph 78.5 48 0.001 37.3 14.7 43 196-238 243-287 (495)
68 PLN02433 uroporphyrinogen deca 78.4 98 0.0021 32.9 16.5 42 367-408 289-337 (345)
69 PRK10415 tRNA-dihydrouridine s 78.3 25 0.00054 37.2 11.8 68 204-280 31-102 (321)
70 PRK11320 prpB 2-methylisocitra 78.1 4 8.7E-05 42.6 5.6 44 195-242 168-211 (292)
71 cd00952 CHBPH_aldolase Trans-o 77.5 98 0.0021 32.5 16.4 77 185-274 25-109 (309)
72 TIGR01303 IMP_DH_rel_1 IMP deh 77.4 37 0.00079 38.0 13.3 46 195-240 226-273 (475)
73 PRK14041 oxaloacetate decarbox 77.4 1.3E+02 0.0028 33.7 18.6 85 302-409 107-195 (467)
74 TIGR01463 mtaA_cmuA methyltran 76.8 94 0.002 32.8 15.9 42 366-407 292-337 (340)
75 PRK14042 pyruvate carboxylase 76.4 1E+02 0.0022 35.5 16.7 125 251-408 59-195 (596)
76 TIGR01108 oadA oxaloacetate de 75.8 1.4E+02 0.003 34.4 17.6 85 302-409 103-191 (582)
77 cd06557 KPHMT-like Ketopantoat 75.6 56 0.0012 33.4 13.0 105 187-325 88-192 (254)
78 PRK13397 3-deoxy-7-phosphohept 75.5 69 0.0015 32.7 13.5 41 33-76 23-65 (250)
79 cd02803 OYE_like_FMN_family Ol 75.4 48 0.001 34.8 13.1 129 184-323 129-301 (327)
80 PF00701 DHDPS: Dihydrodipicol 75.3 28 0.00061 35.9 11.1 77 185-274 18-102 (289)
81 cd02940 DHPD_FMN Dihydropyrimi 75.3 31 0.00067 36.0 11.4 101 232-388 98-198 (299)
82 PF13714 PEP_mutase: Phosphoen 75.2 15 0.00033 37.1 8.8 27 299-325 164-190 (238)
83 PRK06552 keto-hydroxyglutarate 75.0 14 0.00031 36.6 8.4 55 187-261 118-173 (213)
84 TIGR00222 panB 3-methyl-2-oxob 75.0 41 0.00089 34.6 11.8 34 200-237 100-133 (263)
85 PRK09250 fructose-bisphosphate 74.9 58 0.0013 34.8 13.2 55 343-401 192-248 (348)
86 PF00478 IMPDH: IMP dehydrogen 74.9 9.2 0.0002 40.9 7.4 61 156-240 94-156 (352)
87 PRK09282 pyruvate carboxylase 74.9 1.3E+02 0.0029 34.7 17.2 85 302-409 108-196 (592)
88 cd02930 DCR_FMN 2,4-dienoyl-Co 74.9 63 0.0014 34.5 13.9 130 185-323 126-296 (353)
89 TIGR01302 IMP_dehydrog inosine 74.8 73 0.0016 35.4 14.8 44 195-238 225-270 (450)
90 PF03437 BtpA: BtpA family; I 74.3 21 0.00046 36.5 9.5 70 485-556 175-253 (254)
91 TIGR00742 yjbN tRNA dihydrouri 73.0 82 0.0018 33.3 14.0 139 205-393 23-164 (318)
92 cd03465 URO-D_like The URO-D _ 72.9 1.1E+02 0.0025 31.8 15.2 55 198-260 235-289 (330)
93 PRK11320 prpB 2-methylisocitra 72.6 92 0.002 32.6 13.9 82 470-557 165-254 (292)
94 PRK14040 oxaloacetate decarbox 71.9 1.9E+02 0.0041 33.4 17.5 84 302-408 109-196 (593)
95 TIGR03128 RuMP_HxlA 3-hexulose 71.8 26 0.00055 34.1 9.3 66 198-275 68-133 (206)
96 cd04741 DHOD_1A_like Dihydroor 71.6 99 0.0021 32.2 14.1 48 314-387 141-190 (294)
97 PRK12330 oxaloacetate decarbox 71.5 1.4E+02 0.0031 33.6 15.9 85 302-409 109-197 (499)
98 COG5016 Pyruvate/oxaloacetate 71.4 51 0.0011 35.8 11.7 86 302-410 110-199 (472)
99 COG3010 NanE Putative N-acetyl 71.4 98 0.0021 30.7 12.7 88 473-564 87-185 (229)
100 TIGR02317 prpB methylisocitrat 71.4 6.8 0.00015 40.8 5.3 44 195-242 163-206 (285)
101 TIGR00977 LeuA_rel 2-isopropyl 71.2 1.9E+02 0.0041 32.9 21.9 171 185-408 19-195 (526)
102 cd02801 DUS_like_FMN Dihydrour 71.2 60 0.0013 32.0 12.0 68 204-280 21-92 (231)
103 TIGR02319 CPEP_Pphonmut carbox 71.1 9.2 0.0002 40.0 6.2 45 195-243 167-211 (294)
104 TIGR02320 PEP_mutase phosphoen 71.1 8.6 0.00019 40.0 6.0 44 195-238 171-216 (285)
105 PLN03228 methylthioalkylmalate 70.8 1.9E+02 0.0041 32.7 23.4 42 367-408 236-280 (503)
106 PRK10550 tRNA-dihydrouridine s 70.7 77 0.0017 33.4 13.1 63 206-280 25-100 (312)
107 PRK12331 oxaloacetate decarbox 70.6 1.8E+02 0.0039 32.4 18.8 42 368-409 152-196 (448)
108 PRK00115 hemE uroporphyrinogen 70.4 1.4E+02 0.0031 31.7 15.3 40 368-407 297-343 (346)
109 PF01208 URO-D: Uroporphyrinog 69.9 74 0.0016 33.5 13.0 44 363-407 290-342 (343)
110 PRK15452 putative protease; Pr 69.9 1.1E+02 0.0024 33.9 14.6 44 197-241 14-67 (443)
111 cd02801 DUS_like_FMN Dihydrour 69.8 43 0.00093 33.0 10.6 42 367-408 64-121 (231)
112 TIGR00736 nifR3_rel_arch TIM-b 69.8 65 0.0014 32.5 11.7 106 233-394 67-172 (231)
113 cd04738 DHOD_2_like Dihydrooro 69.1 67 0.0015 34.0 12.4 21 370-390 216-236 (327)
114 PRK04147 N-acetylneuraminate l 68.9 1.5E+02 0.0032 30.7 15.6 77 185-274 20-105 (293)
115 PRK07259 dihydroorotate dehydr 68.6 1.5E+02 0.0032 30.8 14.7 73 195-277 106-192 (301)
116 PRK15063 isocitrate lyase; Pro 68.6 6.5 0.00014 42.9 4.6 35 195-230 267-302 (428)
117 cd02932 OYE_YqiM_FMN Old yello 68.3 71 0.0015 33.8 12.4 129 184-323 142-310 (336)
118 PLN02746 hydroxymethylglutaryl 68.0 1.8E+02 0.0038 31.3 17.7 42 367-408 194-238 (347)
119 cd07944 DRE_TIM_HOA_like 4-hyd 67.7 1.5E+02 0.0033 30.3 20.2 42 367-408 135-179 (266)
120 PRK06843 inosine 5-monophospha 67.5 26 0.00057 38.2 8.9 61 156-240 139-201 (404)
121 cd03307 Mta_CmuA_like MtaA_Cmu 67.4 1.2E+02 0.0026 31.8 13.9 68 199-276 237-306 (326)
122 PF13714 PEP_mutase: Phosphoen 66.9 11 0.00025 38.0 5.7 45 192-240 154-198 (238)
123 COG0352 ThiE Thiamine monophos 66.8 1.3E+02 0.0028 29.9 13.0 84 196-285 24-120 (211)
124 COG0821 gcpE 1-hydroxy-2-methy 66.4 37 0.0008 35.9 9.3 47 195-243 38-84 (361)
125 PRK10415 tRNA-dihydrouridine s 66.2 62 0.0013 34.2 11.3 44 365-408 72-131 (321)
126 cd03308 CmuA_CmuC_like CmuA_Cm 66.1 1.9E+02 0.0042 31.2 15.4 43 364-406 325-377 (378)
127 cd03308 CmuA_CmuC_like CmuA_Cm 65.7 1.9E+02 0.004 31.3 15.2 70 198-276 282-356 (378)
128 PRK00278 trpC indole-3-glycero 65.6 1.1E+02 0.0024 31.2 12.8 33 376-408 126-159 (260)
129 PRK05848 nicotinate-nucleotide 65.3 27 0.00058 36.2 8.1 64 197-275 193-257 (273)
130 COG1679 Predicted aconitase [G 65.2 2.1E+02 0.0045 31.0 15.7 29 203-231 214-242 (403)
131 cd00381 IMPDH IMPDH: The catal 65.1 1.8E+02 0.0039 30.7 14.6 44 195-238 95-140 (325)
132 PRK06552 keto-hydroxyglutarate 65.1 87 0.0019 31.1 11.5 57 197-274 79-135 (213)
133 PF00490 ALAD: Delta-aminolevu 65.0 1.2E+02 0.0025 32.1 12.6 135 185-354 139-278 (324)
134 PRK04452 acetyl-CoA decarbonyl 64.5 70 0.0015 33.9 11.1 105 204-328 87-199 (319)
135 PF01207 Dus: Dihydrouridine s 64.2 42 0.00091 35.2 9.6 138 204-393 19-161 (309)
136 PF03437 BtpA: BtpA family; I 63.4 32 0.00068 35.2 8.1 32 187-218 23-54 (254)
137 COG0434 SgcQ Predicted TIM-bar 63.2 31 0.00067 34.8 7.7 32 187-218 28-59 (263)
138 cd01568 QPRTase_NadC Quinolina 63.2 53 0.0012 33.8 9.9 89 253-389 166-254 (269)
139 cd00717 URO-D Uroporphyrinogen 63.1 2E+02 0.0044 30.2 16.1 39 368-406 288-334 (335)
140 PRK07896 nicotinate-nucleotide 63.1 31 0.00067 36.0 8.1 63 198-275 211-274 (289)
141 cd06556 ICL_KPHMT Members of t 63.0 25 0.00055 35.6 7.3 48 187-240 151-198 (240)
142 TIGR01464 hemE uroporphyrinoge 62.7 2E+02 0.0044 30.3 14.6 38 368-405 291-336 (338)
143 PRK06252 methylcobalamin:coenz 62.6 2.1E+02 0.0045 30.1 15.5 42 366-407 290-335 (339)
144 cd04739 DHOD_like Dihydroorota 62.5 86 0.0019 33.2 11.6 38 232-278 98-135 (325)
145 PF01729 QRPTase_C: Quinolinat 62.4 20 0.00043 34.4 6.1 34 197-231 91-124 (169)
146 PRK00865 glutamate racemase; P 62.4 1.5E+02 0.0033 30.2 13.1 49 186-237 47-95 (261)
147 PRK11815 tRNA-dihydrouridine s 62.1 1.5E+02 0.0033 31.4 13.5 140 205-394 33-175 (333)
148 PRK00115 hemE uroporphyrinogen 61.4 2.2E+02 0.0049 30.1 15.5 51 200-260 254-304 (346)
149 PRK05692 hydroxymethylglutaryl 61.0 2.1E+02 0.0046 29.7 18.9 42 367-408 152-196 (287)
150 TIGR01235 pyruv_carbox pyruvat 60.4 1.4E+02 0.003 37.3 14.3 115 267-408 607-730 (1143)
151 cd07943 DRE_TIM_HOA 4-hydroxy- 60.1 2E+02 0.0044 29.2 20.4 43 367-409 138-183 (263)
152 cd04734 OYE_like_3_FMN Old yel 59.2 2E+02 0.0043 30.7 13.8 91 184-274 129-248 (343)
153 PRK09140 2-dehydro-3-deoxy-6-p 57.9 2E+02 0.0043 28.4 15.1 85 195-285 24-120 (206)
154 TIGR00259 thylakoid_BtpA membr 57.8 56 0.0012 33.5 8.8 33 186-218 21-53 (257)
155 PRK07428 nicotinate-nucleotide 57.8 44 0.00095 34.9 8.2 43 197-240 207-250 (288)
156 PRK07896 nicotinate-nucleotide 57.7 79 0.0017 33.0 10.0 61 250-328 183-243 (289)
157 cd03465 URO-D_like The URO-D _ 57.6 2.4E+02 0.0052 29.3 16.1 41 365-405 279-328 (330)
158 PLN02495 oxidoreductase, actin 57.4 96 0.0021 33.8 11.0 44 229-280 109-152 (385)
159 PRK08385 nicotinate-nucleotide 57.4 46 0.001 34.5 8.2 33 197-230 193-225 (278)
160 PRK08227 autoinducer 2 aldolas 57.1 2.4E+02 0.0052 29.1 15.0 33 369-403 157-189 (264)
161 TIGR02090 LEU1_arch isopropylm 56.8 2.8E+02 0.0061 29.8 20.6 42 367-408 138-182 (363)
162 cd07940 DRE_TIM_IPMS 2-isoprop 56.7 2.3E+02 0.005 28.8 21.5 42 367-408 140-184 (268)
163 cd04732 HisA HisA. Phosphorib 56.2 2.1E+02 0.0045 28.2 12.7 106 197-304 86-199 (234)
164 COG1038 PycA Pyruvate carboxyl 55.7 1.9E+02 0.0041 34.4 13.2 48 189-240 629-677 (1149)
165 COG0106 HisA Phosphoribosylfor 55.6 2E+02 0.0044 29.2 12.1 65 197-263 88-158 (241)
166 PLN02433 uroporphyrinogen deca 55.3 2.8E+02 0.0061 29.4 15.7 83 200-291 247-336 (345)
167 PLN02591 tryptophan synthase 54.9 2.5E+02 0.0054 28.6 16.4 82 471-554 118-210 (250)
168 cd00717 URO-D Uroporphyrinogen 54.9 2.8E+02 0.006 29.2 15.1 53 198-260 243-295 (335)
169 cd02911 arch_FMN Archeal FMN-b 54.7 1.2E+02 0.0026 30.5 10.6 41 366-407 81-137 (233)
170 TIGR00973 leuA_bact 2-isopropy 54.7 3.6E+02 0.0077 30.4 22.1 165 185-409 19-188 (494)
171 PRK14057 epimerase; Provisiona 54.6 74 0.0016 32.6 9.0 106 370-507 32-156 (254)
172 PRK08318 dihydropyrimidine deh 54.5 1.2E+02 0.0026 33.2 11.5 42 231-280 97-138 (420)
173 PRK03170 dihydrodipicolinate s 54.1 2.7E+02 0.0057 28.7 16.3 77 185-274 18-102 (292)
174 KOG2335|consensus 53.7 1.6E+02 0.0034 31.6 11.4 70 194-280 33-110 (358)
175 PRK00278 trpC indole-3-glycero 53.7 2.6E+02 0.0057 28.5 13.1 94 232-328 48-159 (260)
176 PLN02746 hydroxymethylglutaryl 53.5 1.4E+02 0.003 32.1 11.2 54 186-245 194-251 (347)
177 TIGR00007 phosphoribosylformim 53.4 2.3E+02 0.0051 27.9 12.9 106 197-304 85-198 (230)
178 PRK10605 N-ethylmaleimide redu 53.0 3.2E+02 0.007 29.4 14.4 29 184-212 147-178 (362)
179 TIGR00612 ispG_gcpE 1-hydroxy- 53.0 1.2E+02 0.0027 32.2 10.5 93 195-303 36-131 (346)
180 PRK13111 trpA tryptophan synth 52.7 2.7E+02 0.0059 28.5 17.7 81 473-554 131-221 (258)
181 cd00465 URO-D_CIMS_like The UR 52.7 2.8E+02 0.006 28.5 15.6 68 198-276 213-284 (306)
182 cd00958 DhnA Class I fructose- 52.3 2.4E+02 0.0052 27.9 12.4 42 198-240 81-129 (235)
183 cd00954 NAL N-Acetylneuraminic 52.1 2.9E+02 0.0062 28.5 16.2 77 185-274 17-102 (288)
184 COG5016 Pyruvate/oxaloacetate 52.0 1.9E+02 0.0041 31.7 11.7 54 188-244 96-151 (472)
185 PLN02617 imidazole glycerol ph 51.9 2.5E+02 0.0055 32.0 13.6 47 197-243 338-395 (538)
186 PRK00915 2-isopropylmalate syn 51.8 4E+02 0.0087 30.1 19.3 163 185-408 22-190 (513)
187 cd06557 KPHMT-like Ketopantoat 51.7 25 0.00054 36.0 5.1 45 187-237 153-197 (254)
188 COG0042 tRNA-dihydrouridine sy 51.6 1.6E+02 0.0035 31.2 11.4 29 366-394 75-103 (323)
189 PRK13586 1-(5-phosphoribosyl)- 51.6 1.8E+02 0.004 29.1 11.3 101 197-304 86-198 (232)
190 PRK02506 dihydroorotate dehydr 51.5 1.1E+02 0.0025 32.0 10.2 40 232-280 91-131 (310)
191 cd04723 HisA_HisF Phosphoribos 51.3 2.6E+02 0.0056 28.0 12.4 76 197-276 91-169 (233)
192 PLN02495 oxidoreductase, actin 51.2 91 0.002 33.9 9.6 72 196-277 130-217 (385)
193 PRK08385 nicotinate-nucleotide 51.2 89 0.0019 32.4 9.1 59 253-328 168-226 (278)
194 KOG2335|consensus 51.0 21 0.00046 38.0 4.6 39 341-394 71-109 (358)
195 PRK05567 inosine 5'-monophosph 50.7 1.3E+02 0.0028 33.7 11.1 43 196-238 230-274 (486)
196 cd00953 KDG_aldolase KDG (2-ke 50.4 3E+02 0.0065 28.3 15.0 75 186-274 17-97 (279)
197 PRK09016 quinolinate phosphori 49.5 58 0.0013 34.1 7.5 63 197-276 219-281 (296)
198 PRK00366 ispG 4-hydroxy-3-meth 49.1 1.5E+02 0.0032 31.8 10.4 94 194-303 43-140 (360)
199 PRK14042 pyruvate carboxylase 49.1 4.8E+02 0.01 30.2 15.8 87 201-292 104-195 (596)
200 PRK07428 nicotinate-nucleotide 49.1 1.4E+02 0.003 31.2 10.2 91 254-391 182-272 (288)
201 cd00452 KDPG_aldolase KDPG and 48.9 2.5E+02 0.0055 26.9 15.6 19 195-213 18-36 (190)
202 cd04724 Tryptophan_synthase_al 48.8 3E+02 0.0064 27.7 16.1 83 471-554 116-208 (242)
203 TIGR01346 isocit_lyase isocitr 48.5 38 0.00081 38.1 6.2 62 303-384 379-442 (527)
204 cd04724 Tryptophan_synthase_al 48.4 3E+02 0.0065 27.7 16.7 91 195-292 16-128 (242)
205 PRK06106 nicotinate-nucleotide 48.3 69 0.0015 33.3 7.8 61 198-275 206-266 (281)
206 PRK12331 oxaloacetate decarbox 48.3 4.3E+02 0.0093 29.4 15.6 87 201-292 104-195 (448)
207 TIGR02660 nifV_homocitr homoci 47.9 3.8E+02 0.0083 28.7 17.7 42 367-408 139-183 (365)
208 PRK13587 1-(5-phosphoribosyl)- 47.9 2.7E+02 0.0059 27.9 11.9 75 197-276 89-169 (234)
209 PF02581 TMP-TENI: Thiamine mo 47.8 1.5E+02 0.0033 28.1 9.8 85 195-285 14-111 (180)
210 cd01568 QPRTase_NadC Quinolina 47.8 60 0.0013 33.4 7.3 38 202-240 197-234 (269)
211 COG0826 Collagenase and relate 47.7 1E+02 0.0022 33.1 9.2 42 195-243 81-123 (347)
212 PRK09016 quinolinate phosphori 47.7 1.3E+02 0.0028 31.6 9.6 56 254-326 195-250 (296)
213 PRK05742 nicotinate-nucleotide 47.3 77 0.0017 32.8 8.0 40 198-240 201-240 (277)
214 cd04726 KGPDC_HPS 3-Keto-L-gul 47.3 2.6E+02 0.0057 26.7 14.0 40 199-239 70-109 (202)
215 PRK02615 thiamine-phosphate py 47.2 3.3E+02 0.0073 29.2 13.0 45 195-240 159-208 (347)
216 PRK05848 nicotinate-nucleotide 46.9 1.5E+02 0.0032 30.8 9.9 93 252-391 166-258 (273)
217 TIGR03128 RuMP_HxlA 3-hexulose 46.8 2.8E+02 0.006 26.8 14.0 89 187-291 10-100 (206)
218 PRK13111 trpA tryptophan synth 46.8 3.4E+02 0.0073 27.8 19.4 111 196-323 29-163 (258)
219 PF00682 HMGL-like: HMGL-like 46.5 2.6E+02 0.0056 27.7 11.6 65 187-261 135-203 (237)
220 TIGR02635 RhaI_grampos L-rhamn 46.2 4.2E+02 0.0092 28.8 16.7 130 173-317 138-292 (378)
221 TIGR00343 pyridoxal 5'-phospha 46.2 3.2E+02 0.007 28.5 12.1 64 195-275 78-141 (287)
222 PF04131 NanE: Putative N-acet 45.5 1.6E+02 0.0034 28.9 9.2 138 372-564 1-149 (192)
223 PF00290 Trp_syntA: Tryptophan 45.5 2.6E+02 0.0055 28.8 11.3 171 344-552 10-217 (259)
224 PRK13398 3-deoxy-7-phosphohept 45.3 3.6E+02 0.0078 27.7 17.7 29 34-62 36-64 (266)
225 TIGR02313 HpaI-NOT-DapA 2,4-di 45.0 3.8E+02 0.0081 27.8 16.3 76 185-273 17-100 (294)
226 PRK12999 pyruvate carboxylase; 44.6 7.4E+02 0.016 31.1 17.8 163 219-409 555-733 (1146)
227 cd04733 OYE_like_2_FMN Old yel 44.5 4.1E+02 0.0088 28.1 19.7 129 184-323 137-312 (338)
228 PRK06512 thiamine-phosphate py 43.7 3.2E+02 0.007 27.2 11.6 45 195-240 28-78 (221)
229 PRK04452 acetyl-CoA decarbonyl 43.6 1.1E+02 0.0025 32.3 8.6 31 380-410 86-124 (319)
230 PRK06096 molybdenum transport 43.5 98 0.0021 32.2 8.0 33 197-230 200-232 (284)
231 PF07302 AroM: AroM protein; 43.2 94 0.002 31.1 7.5 64 147-239 145-208 (221)
232 cd01572 QPRTase Quinolinate ph 42.9 84 0.0018 32.4 7.5 39 199-240 195-233 (268)
233 PRK00311 panB 3-methyl-2-oxobu 42.9 36 0.00079 35.0 4.7 45 187-237 156-200 (264)
234 cd04735 OYE_like_4_FMN Old yel 42.9 1.2E+02 0.0025 32.5 8.9 91 184-274 132-254 (353)
235 TIGR01949 AroFGH_arch predicte 42.4 3.8E+02 0.0082 27.1 12.2 23 369-393 206-228 (258)
236 PF00977 His_biosynth: Histidi 42.2 45 0.00098 33.3 5.3 104 197-304 86-200 (229)
237 cd02911 arch_FMN Archeal FMN-b 42.2 3.7E+02 0.008 26.9 12.4 110 225-392 65-174 (233)
238 cd07937 DRE_TIM_PC_TC_5S Pyruv 42.1 4E+02 0.0087 27.3 16.5 85 302-409 103-191 (275)
239 cd07941 DRE_TIM_LeuA3 Desulfob 42.1 4E+02 0.0086 27.3 21.2 42 367-408 148-192 (273)
240 PRK07565 dihydroorotate dehydr 42.1 4.4E+02 0.0096 27.8 15.3 61 196-263 117-188 (334)
241 cd07947 DRE_TIM_Re_CS Clostrid 42.0 2.5E+02 0.0054 29.1 10.8 56 190-245 146-213 (279)
242 COG0107 HisF Imidazoleglycerol 41.9 2.6E+02 0.0057 28.3 10.2 74 201-278 91-178 (256)
243 PRK04180 pyridoxal biosynthesi 41.5 4E+02 0.0086 27.9 11.9 63 195-274 85-147 (293)
244 PRK02412 aroD 3-dehydroquinate 41.4 4E+02 0.0086 27.0 19.1 156 187-406 26-189 (253)
245 PLN02716 nicotinate-nucleotide 41.3 1.7E+02 0.0036 30.9 9.3 66 253-326 185-260 (308)
246 cd07948 DRE_TIM_HCS Saccharomy 41.2 4.1E+02 0.0089 27.2 22.0 42 367-408 138-182 (262)
247 TIGR01037 pyrD_sub1_fam dihydr 41.1 3.4E+02 0.0074 28.0 11.9 43 367-409 100-156 (300)
248 CHL00040 rbcL ribulose-1,5-bis 41.1 5.6E+02 0.012 28.8 16.3 58 343-406 288-350 (475)
249 PRK08005 epimerase; Validated 40.9 1.6E+02 0.0035 29.2 8.8 109 369-507 12-130 (210)
250 cd01572 QPRTase Quinolinate ph 40.9 1.8E+02 0.0038 30.0 9.5 88 254-391 168-255 (268)
251 cd08205 RuBisCO_IV_RLP Ribulos 40.5 2.9E+02 0.0062 29.9 11.4 23 37-59 144-166 (367)
252 TIGR02321 Pphn_pyruv_hyd phosp 40.5 37 0.0008 35.4 4.4 41 195-237 168-209 (290)
253 PRK04208 rbcL ribulose bisopho 40.3 5.8E+02 0.012 28.6 16.6 80 186-276 173-262 (468)
254 cd00452 KDPG_aldolase KDPG and 40.2 1E+02 0.0023 29.6 7.3 24 36-59 13-36 (190)
255 COG0042 tRNA-dihydrouridine sy 39.9 4.2E+02 0.0092 28.0 12.4 63 205-279 33-103 (323)
256 cd07939 DRE_TIM_NifV Streptomy 39.8 4.1E+02 0.009 26.8 20.1 42 367-408 136-180 (259)
257 PLN02892 isocitrate lyase 39.8 60 0.0013 36.8 6.1 63 302-384 399-464 (570)
258 PRK08745 ribulose-phosphate 3- 39.7 4E+02 0.0087 26.6 12.6 109 370-507 16-134 (223)
259 PRK06096 molybdenum transport 39.4 2.1E+02 0.0046 29.7 9.8 58 253-327 175-232 (284)
260 PRK08091 ribulose-phosphate 3- 39.0 2.5E+02 0.0055 28.2 10.0 106 370-507 25-142 (228)
261 PRK06559 nicotinate-nucleotide 38.6 1.1E+02 0.0025 31.8 7.6 63 197-276 208-270 (290)
262 PRK13585 1-(5-phosphoribosyl)- 37.9 3.3E+02 0.0071 27.0 10.8 76 198-274 90-171 (241)
263 TIGR01919 hisA-trpF 1-(5-phosp 37.8 3.6E+02 0.0079 27.2 11.1 103 197-304 87-202 (243)
264 cd02933 OYE_like_FMN Old yello 37.8 5.2E+02 0.011 27.4 14.7 29 185-213 141-172 (338)
265 TIGR00222 panB 3-methyl-2-oxob 37.4 64 0.0014 33.2 5.5 39 187-227 155-193 (263)
266 cd03309 CmuC_like CmuC_like. P 37.4 5.2E+02 0.011 27.3 15.7 74 198-279 226-304 (321)
267 TIGR01371 met_syn_B12ind 5-met 37.4 4.5E+02 0.0098 31.3 13.2 84 188-283 173-266 (750)
268 cd02931 ER_like_FMN Enoate red 37.2 5.7E+02 0.012 27.7 13.5 196 157-393 13-275 (382)
269 PRK03620 5-dehydro-4-deoxygluc 37.2 1.5E+02 0.0033 30.9 8.5 104 471-576 28-149 (303)
270 PF04476 DUF556: Protein of un 37.1 4.6E+02 0.0099 26.6 13.4 41 362-403 159-199 (235)
271 PLN02417 dihydrodipicolinate s 36.9 1.9E+02 0.0041 29.8 9.0 77 185-274 18-102 (280)
272 PLN02424 ketopantoate hydroxym 36.9 5.5E+02 0.012 27.4 14.5 34 371-405 183-216 (332)
273 TIGR01306 GMP_reduct_2 guanosi 36.8 5.4E+02 0.012 27.3 15.2 140 147-390 71-227 (321)
274 cd00950 DHDPS Dihydrodipicolin 36.7 4.8E+02 0.01 26.6 12.7 46 37-88 19-64 (284)
275 PRK06106 nicotinate-nucleotide 36.7 2.3E+02 0.0051 29.4 9.5 58 253-326 179-236 (281)
276 KOG2949|consensus 36.5 3.8E+02 0.0082 27.1 10.3 92 195-289 119-219 (306)
277 TIGR00693 thiE thiamine-phosph 36.1 3.9E+02 0.0084 25.4 13.2 44 195-239 15-63 (196)
278 PRK05742 nicotinate-nucleotide 36.0 2.8E+02 0.006 28.8 10.0 88 253-391 175-262 (277)
279 PRK08005 epimerase; Validated 36.0 3.3E+02 0.0072 27.0 10.2 94 198-305 73-173 (210)
280 PLN02925 4-hydroxy-3-methylbut 35.8 1.7E+02 0.0036 34.3 8.9 48 195-243 112-163 (733)
281 cd04722 TIM_phosphate_binding 35.7 1.5E+02 0.0033 27.4 7.6 90 194-291 13-110 (200)
282 PRK12858 tagatose 1,6-diphosph 35.7 5.8E+02 0.012 27.3 13.3 24 369-392 253-276 (340)
283 TIGR03855 NAD_NadX aspartate d 35.4 98 0.0021 31.1 6.4 45 193-239 48-95 (229)
284 PRK02048 4-hydroxy-3-methylbut 35.4 1.7E+02 0.0036 33.7 8.7 48 195-243 43-94 (611)
285 PF04551 GcpE: GcpE protein; 35.3 98 0.0021 33.2 6.6 47 196-243 34-84 (359)
286 PRK15452 putative protease; Pr 35.3 2.7E+02 0.0059 30.9 10.4 42 195-243 78-120 (443)
287 COG5564 Predicted TIM-barrel e 35.2 1.5E+02 0.0032 29.7 7.3 85 4-95 124-219 (276)
288 PRK05718 keto-hydroxyglutarate 35.2 2.9E+02 0.0064 27.4 9.7 100 46-273 81-182 (212)
289 cd03309 CmuC_like CmuC_like. P 34.8 5.7E+02 0.012 27.0 16.2 23 195-217 157-181 (321)
290 PRK00125 pyrF orotidine 5'-pho 34.8 3.2E+02 0.0069 28.4 10.2 98 186-291 34-139 (278)
291 cd01573 modD_like ModD; Quinol 34.7 1.5E+02 0.0033 30.5 7.9 37 203-240 200-237 (272)
292 TIGR01302 IMP_dehydrog inosine 34.7 4.8E+02 0.01 28.9 12.3 27 37-64 222-248 (450)
293 cd08206 RuBisCO_large_I_II_III 34.7 6.6E+02 0.014 27.7 15.5 80 186-276 145-234 (414)
294 PRK05286 dihydroorotate dehydr 34.5 2.9E+02 0.0063 29.4 10.3 35 370-408 302-339 (344)
295 PRK12344 putative alpha-isopro 34.2 7.4E+02 0.016 28.1 25.2 42 367-408 155-199 (524)
296 cd02810 DHOD_DHPD_FMN Dihydroo 34.0 2.5E+02 0.0055 28.7 9.5 40 20-64 5-45 (289)
297 PRK06978 nicotinate-nucleotide 33.9 1.4E+02 0.0031 31.2 7.5 33 196-229 215-247 (294)
298 PRK12999 pyruvate carboxylase; 33.5 7.8E+02 0.017 31.0 14.9 88 199-292 633-732 (1146)
299 cd00958 DhnA Class I fructose- 33.4 1.3E+02 0.0029 29.8 7.1 35 369-403 142-176 (235)
300 PF00701 DHDPS: Dihydrodipicol 33.3 5.4E+02 0.012 26.3 13.8 45 37-87 20-64 (289)
301 TIGR00078 nadC nicotinate-nucl 33.2 1.4E+02 0.0031 30.7 7.3 40 198-240 190-229 (265)
302 PRK06498 isocitrate lyase; Pro 33.1 73 0.0016 35.5 5.3 32 204-235 343-376 (531)
303 KOG2368|consensus 32.8 3.7E+02 0.008 27.2 9.6 39 367-408 166-210 (316)
304 PRK06543 nicotinate-nucleotide 32.7 1.6E+02 0.0034 30.7 7.5 32 197-229 204-235 (281)
305 PF02548 Pantoate_transf: Keto 32.1 3.4E+02 0.0073 28.0 9.6 109 158-288 77-195 (261)
306 TIGR01334 modD putative molybd 32.0 2.4E+02 0.0052 29.3 8.7 33 197-230 199-231 (277)
307 cd04823 ALAD_PBGS_aspartate_ri 32.0 33 0.00072 36.0 2.4 25 35-59 286-310 (320)
308 PRK12330 oxaloacetate decarbox 31.9 7.9E+02 0.017 27.8 15.2 85 201-292 105-196 (499)
309 COG2224 AceA Isocitrate lyase 31.8 85 0.0019 34.1 5.5 61 304-384 284-346 (433)
310 cd01573 modD_like ModD; Quinol 31.8 3.2E+02 0.0069 28.2 9.7 57 254-327 170-226 (272)
311 TIGR00078 nadC nicotinate-nucl 31.8 3.3E+02 0.0072 27.9 9.7 86 254-389 164-249 (265)
312 PRK07094 biotin synthase; Prov 31.6 6.1E+02 0.013 26.3 15.2 45 186-234 70-118 (323)
313 KOG2794|consensus 31.4 34 0.00074 35.0 2.3 25 35-59 303-327 (340)
314 PRK06498 isocitrate lyase; Pro 31.4 1.1E+02 0.0024 34.2 6.3 28 301-328 343-371 (531)
315 cd08207 RLP_NonPhot Ribulose b 31.3 7.4E+02 0.016 27.2 13.4 53 186-242 156-218 (406)
316 TIGR01108 oadA oxaloacetate de 31.3 8.7E+02 0.019 28.0 15.7 87 201-292 99-190 (582)
317 COG0159 TrpA Tryptophan syntha 31.2 6.1E+02 0.013 26.2 19.0 72 482-554 145-226 (265)
318 PRK09282 pyruvate carboxylase 31.1 8.8E+02 0.019 28.0 15.4 85 201-292 104-195 (592)
319 COG0157 NadC Nicotinate-nucleo 31.1 3.1E+02 0.0066 28.5 9.1 67 242-325 163-229 (280)
320 PRK07094 biotin synthase; Prov 30.9 2.5E+02 0.0055 29.2 9.0 77 197-279 130-219 (323)
321 cd04824 eu_ALAD_PBGS_cysteine_ 30.8 35 0.00077 35.8 2.4 25 35-59 287-311 (320)
322 cd00405 PRAI Phosphoribosylant 30.8 2.8E+02 0.006 26.9 8.7 17 198-214 11-27 (203)
323 COG0074 SucD Succinyl-CoA synt 30.7 4.2E+02 0.009 27.7 9.9 24 370-393 103-126 (293)
324 PRK13384 delta-aminolevulinic 30.5 37 0.00079 35.7 2.4 25 35-59 290-314 (322)
325 PRK09250 fructose-bisphosphate 30.3 1.5E+02 0.0032 31.8 7.0 59 343-407 125-183 (348)
326 cd08213 RuBisCO_large_III Ribu 30.3 6.9E+02 0.015 27.5 12.3 59 343-407 251-314 (412)
327 cd00384 ALAD_PBGS Porphobilino 29.5 39 0.00085 35.4 2.5 25 35-59 281-305 (314)
328 cd08210 RLP_RrRLP Ribulose bis 29.4 7.5E+02 0.016 26.7 17.9 79 186-276 138-226 (364)
329 cd04738 DHOD_2_like Dihydrooro 29.2 5.7E+02 0.012 26.9 11.3 74 191-273 146-234 (327)
330 PLN02446 (5-phosphoribosyl)-5- 29.1 6.1E+02 0.013 26.1 11.0 105 197-304 95-216 (262)
331 PLN02591 tryptophan synthase 29.1 6.3E+02 0.014 25.7 18.9 104 195-315 18-143 (250)
332 PRK00748 1-(5-phosphoribosyl)- 29.1 5.6E+02 0.012 25.1 12.4 115 198-323 88-210 (233)
333 PRK09389 (R)-citramalate synth 29.0 8.7E+02 0.019 27.3 21.0 42 367-408 140-184 (488)
334 TIGR03249 KdgD 5-dehydro-4-deo 28.8 2.4E+02 0.0052 29.2 8.3 103 471-575 26-146 (296)
335 KOG0369|consensus 28.8 1.1E+02 0.0024 35.5 5.8 71 169-239 694-768 (1176)
336 CHL00200 trpA tryptophan synth 28.6 6E+02 0.013 26.0 11.0 35 252-287 188-222 (263)
337 PRK11858 aksA trans-homoaconit 28.5 7.7E+02 0.017 26.6 17.3 42 367-408 142-186 (378)
338 PRK06978 nicotinate-nucleotide 28.5 3.8E+02 0.0081 28.1 9.4 57 253-326 191-247 (294)
339 PRK08091 ribulose-phosphate 3- 28.5 6.2E+02 0.013 25.4 10.8 96 198-305 83-189 (228)
340 TIGR03326 rubisco_III ribulose 28.3 8.3E+02 0.018 26.9 16.8 53 186-242 157-219 (412)
341 PRK13523 NADPH dehydrogenase N 28.2 7.4E+02 0.016 26.3 13.6 90 185-276 131-248 (337)
342 PLN00124 succinyl-CoA ligase [ 28.2 2.6E+02 0.0057 30.8 8.7 65 185-261 327-396 (422)
343 TIGR01163 rpe ribulose-phospha 28.2 5.3E+02 0.012 24.6 12.9 87 194-292 12-103 (210)
344 cd00951 KDGDH 5-dehydro-4-deox 28.0 2.6E+02 0.0056 28.9 8.3 57 519-575 79-141 (289)
345 PRK09517 multifunctional thiam 28.0 1E+03 0.022 28.4 14.2 151 195-403 21-185 (755)
346 PF00490 ALAD: Delta-aminolevu 27.8 45 0.00098 35.1 2.6 25 35-59 291-315 (324)
347 PTZ00413 lipoate synthase; Pro 27.6 7.5E+02 0.016 27.0 11.7 132 217-387 178-327 (398)
348 PRK06559 nicotinate-nucleotide 27.0 3.5E+02 0.0077 28.2 9.0 68 242-326 172-239 (290)
349 PRK02506 dihydroorotate dehydr 27.0 2.3E+02 0.005 29.7 7.8 53 343-409 92-156 (310)
350 PRK12581 oxaloacetate decarbox 26.9 9.3E+02 0.02 27.0 12.7 65 191-261 161-228 (468)
351 TIGR00736 nifR3_rel_arch TIM-b 26.8 1.1E+02 0.0023 31.0 5.0 25 544-568 119-143 (231)
352 TIGR01769 GGGP geranylgeranylg 26.8 1.5E+02 0.0032 29.3 5.9 41 198-238 16-58 (205)
353 PRK08673 3-deoxy-7-phosphohept 26.7 8.1E+02 0.017 26.2 14.2 52 34-96 102-155 (335)
354 PRK00125 pyrF orotidine 5'-pho 26.4 4.8E+02 0.01 27.0 9.8 128 369-528 99-235 (278)
355 PF05582 Peptidase_U57: YabG p 26.4 2.6E+02 0.0056 29.1 7.6 103 360-497 105-214 (287)
356 PF01207 Dus: Dihydrouridine s 26.4 1.2E+02 0.0026 31.8 5.5 28 366-393 62-89 (309)
357 TIGR01235 pyruv_carbox pyruvat 26.2 5.5E+02 0.012 32.3 11.8 64 192-261 688-754 (1143)
358 TIGR00067 glut_race glutamate 26.1 1.9E+02 0.0042 29.3 6.8 47 186-237 40-89 (251)
359 cd00952 CHBPH_aldolase Trans-o 26.0 7.7E+02 0.017 25.7 13.8 45 37-88 27-72 (309)
360 COG1902 NemA NADH:flavin oxido 25.8 8.6E+02 0.019 26.2 14.2 177 157-387 18-255 (363)
361 PRK08255 salicylyl-CoA 5-hydro 25.8 4.6E+02 0.01 31.2 10.9 89 184-274 539-657 (765)
362 cd04823 ALAD_PBGS_aspartate_ri 25.7 2.5E+02 0.0054 29.7 7.5 103 466-571 137-274 (320)
363 TIGR01334 modD putative molybd 25.7 5.1E+02 0.011 26.9 9.8 59 252-327 173-231 (277)
364 PLN02716 nicotinate-nucleotide 25.7 2.5E+02 0.0054 29.6 7.6 32 198-229 215-260 (308)
365 TIGR01182 eda Entner-Doudoroff 25.7 6.6E+02 0.014 24.8 11.9 105 197-389 71-175 (204)
366 PRK06543 nicotinate-nucleotide 25.6 3.6E+02 0.0079 28.0 8.7 58 253-326 178-235 (281)
367 PRK09427 bifunctional indole-3 25.5 2E+02 0.0044 32.0 7.3 154 380-568 129-316 (454)
368 COG0284 PyrF Orotidine-5'-phos 25.5 4.4E+02 0.0095 26.7 9.1 82 198-281 81-169 (240)
369 cd02803 OYE_like_FMN_family Ol 25.2 3.3E+02 0.0071 28.4 8.7 100 266-393 152-251 (327)
370 PRK09283 delta-aminolevulinic 25.2 52 0.0011 34.6 2.5 25 35-59 289-313 (323)
371 TIGR00640 acid_CoA_mut_C methy 25.0 95 0.0021 28.3 3.9 38 368-408 41-80 (132)
372 COG1038 PycA Pyruvate carboxyl 25.0 1.9E+02 0.004 34.5 6.9 62 177-238 678-742 (1149)
373 cd07939 DRE_TIM_NifV Streptomy 24.8 7.3E+02 0.016 25.0 11.4 53 187-245 137-192 (259)
374 TIGR02321 Pphn_pyruv_hyd phosp 24.6 8.1E+02 0.018 25.5 13.6 38 369-406 165-203 (290)
375 cd03312 CIMS_N_terminal_like C 24.6 8.9E+02 0.019 25.9 13.8 122 188-327 177-309 (360)
376 PRK02227 hypothetical protein; 24.6 7.5E+02 0.016 25.1 11.9 20 198-217 72-91 (238)
377 TIGR01346 isocit_lyase isocitr 24.5 1.1E+02 0.0024 34.5 5.0 30 205-234 378-409 (527)
378 PRK14114 1-(5-phosphoribosyl)- 24.4 7.4E+02 0.016 25.0 10.6 100 197-304 86-197 (241)
379 COG2224 AceA Isocitrate lyase 24.3 1.1E+02 0.0024 33.2 4.8 29 206-234 283-313 (433)
380 COG1646 Predicted phosphate-bi 24.3 1.2E+02 0.0026 30.6 4.7 39 177-215 171-222 (240)
381 cd07938 DRE_TIM_HMGL 3-hydroxy 24.3 7.9E+02 0.017 25.2 18.8 41 368-408 147-190 (274)
382 TIGR00737 nifR3_yhdG putative 24.2 1.5E+02 0.0032 31.2 5.7 28 366-393 71-98 (319)
383 PLN02235 ATP citrate (pro-S)-l 24.0 5E+02 0.011 28.7 9.8 69 185-262 307-389 (423)
384 cd07937 DRE_TIM_PC_TC_5S Pyruv 23.9 7.9E+02 0.017 25.1 11.7 88 200-292 98-190 (275)
385 COG0157 NadC Nicotinate-nucleo 23.9 3.3E+02 0.0071 28.3 7.9 31 197-228 199-229 (280)
386 cd02940 DHPD_FMN Dihydropyrimi 23.7 1.6E+02 0.0035 30.5 5.9 42 368-409 111-167 (299)
387 PRK08072 nicotinate-nucleotide 23.5 4.6E+02 0.01 27.1 9.1 98 239-387 160-257 (277)
388 cd08212 RuBisCO_large_I Ribulo 23.5 1.1E+03 0.023 26.4 15.6 59 343-407 265-328 (450)
389 PF04551 GcpE: GcpE protein; 23.5 1.2E+02 0.0026 32.5 4.8 31 369-399 117-148 (359)
390 cd04741 DHOD_1A_like Dihydroor 23.4 3.3E+02 0.0072 28.2 8.1 53 343-410 91-157 (294)
391 cd04739 DHOD_like Dihydroorota 23.3 3.7E+02 0.0079 28.4 8.5 53 343-409 99-162 (325)
392 cd06831 PLPDE_III_ODC_like_AZI 23.3 7.3E+02 0.016 26.9 11.1 70 201-276 97-171 (394)
393 cd00564 TMP_TenI Thiamine mono 23.2 6.1E+02 0.013 23.6 13.0 44 195-238 14-61 (196)
394 PRK09427 bifunctional indole-3 23.2 1.1E+03 0.023 26.4 12.8 63 198-276 124-187 (454)
395 PRK14057 epimerase; Provisiona 23.1 8.3E+02 0.018 25.0 10.9 96 198-305 90-203 (254)
396 PRK05198 2-dehydro-3-deoxyphos 22.9 8.4E+02 0.018 25.2 10.5 181 35-318 20-237 (264)
397 PLN02892 isocitrate lyase 22.8 1.2E+02 0.0027 34.4 4.9 30 205-234 399-430 (570)
398 cd06556 ICL_KPHMT Members of t 22.7 3.9E+02 0.0085 27.0 8.2 96 199-325 95-190 (240)
399 TIGR01036 pyrD_sub2 dihydrooro 22.7 9.3E+02 0.02 25.5 14.0 20 198-217 71-90 (335)
400 PRK09283 delta-aminolevulinic 22.7 3.1E+02 0.0067 29.0 7.5 103 466-571 140-277 (323)
401 PRK00043 thiE thiamine-phospha 22.7 6.8E+02 0.015 23.9 15.6 21 195-215 23-43 (212)
402 TIGR03700 mena_SCO4494 putativ 22.6 1.3E+02 0.0029 32.1 5.1 78 196-280 150-242 (351)
403 COG5309 Exo-beta-1,3-glucanase 22.5 1.5E+02 0.0033 30.6 5.0 44 172-218 242-285 (305)
404 TIGR02990 ectoine_eutA ectoine 22.3 8.1E+02 0.018 24.7 12.6 75 473-563 133-210 (239)
405 COG1091 RfbD dTDP-4-dehydrorha 22.3 3E+02 0.0065 28.6 7.4 87 1-96 1-90 (281)
406 cd02070 corrinoid_protein_B12- 22.2 3.4E+02 0.0075 26.3 7.6 71 484-558 82-160 (201)
407 PRK09722 allulose-6-phosphate 22.2 8.1E+02 0.018 24.6 10.9 95 198-305 74-179 (229)
408 PF00463 ICL: Isocitrate lyase 22.2 77 0.0017 35.6 3.2 60 303-383 378-440 (526)
409 PF01408 GFO_IDH_MocA: Oxidore 22.1 2.4E+02 0.0053 24.2 6.0 43 195-239 75-119 (120)
410 PLN02321 2-isopropylmalate syn 22.0 1.3E+03 0.028 26.9 18.6 68 186-261 237-309 (632)
411 PRK14041 oxaloacetate decarbox 21.9 1.1E+03 0.025 26.3 15.3 85 201-292 103-194 (467)
412 cd00739 DHPS DHPS subgroup of 21.9 3E+02 0.0066 28.1 7.3 95 471-570 24-131 (257)
413 TIGR00970 leuA_yeast 2-isoprop 21.8 1.2E+03 0.027 26.6 22.6 184 171-408 33-231 (564)
414 cd02067 B12-binding B12 bindin 21.7 4E+02 0.0087 23.1 7.3 49 507-558 26-77 (119)
415 cd00945 Aldolase_Class_I Class 21.6 6.6E+02 0.014 23.4 14.1 24 37-60 11-34 (201)
416 PRK05692 hydroxymethylglutaryl 21.6 9.1E+02 0.02 25.0 18.0 63 193-261 155-221 (287)
417 PRK01033 imidazole glycerol ph 21.5 8.5E+02 0.018 24.6 10.6 102 199-304 89-205 (258)
418 TIGR01859 fruc_bis_ald_ fructo 21.5 9.1E+02 0.02 25.0 15.2 41 201-243 10-50 (282)
419 cd08209 RLP_DK-MTP-1-P-enolase 21.4 1.1E+03 0.024 25.8 15.8 59 343-407 243-307 (391)
420 PRK12290 thiE thiamine-phospha 21.2 1.2E+03 0.025 26.0 12.0 42 198-240 222-268 (437)
421 COG0113 HemB Delta-aminolevuli 21.1 71 0.0015 33.4 2.5 24 36-59 295-318 (330)
422 PRK05458 guanosine 5'-monophos 21.1 2.4E+02 0.0053 29.9 6.6 68 483-553 84-159 (326)
423 PLN02475 5-methyltetrahydropte 21.0 1.2E+03 0.027 27.8 13.0 80 188-278 181-270 (766)
424 PTZ00170 D-ribulose-5-phosphat 20.6 7.3E+02 0.016 24.7 9.6 41 199-240 81-121 (228)
425 TIGR02370 pyl_corrinoid methyl 20.2 3.3E+02 0.0073 26.4 7.0 71 485-558 85-162 (197)
426 PRK07455 keto-hydroxyglutarate 20.2 4.1E+02 0.0088 25.6 7.5 22 36-57 21-42 (187)
427 PRK08999 hypothetical protein; 20.1 9.6E+02 0.021 24.7 11.6 46 195-240 146-195 (312)
No 1
>PLN02489 homocysteine S-methyltransferase
Probab=100.00 E-value=1.4e-67 Score=553.14 Aligned_cols=311 Identities=38% Similarity=0.662 Sum_probs=271.5
Q ss_pred CceEEEeccHHHHHHhccCCCCCCCCCcchhhhccCHHHHHHHHHHHHHHhcceeeccccccChhchhhhcCCChHHHHH
Q psy17603 2 ANVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQ 81 (591)
Q Consensus 2 ~~~lilDGg~gT~L~~~~g~~~~~~~lWs~~~l~~~Pe~v~~vH~~yl~AGAdiI~TnTy~as~~~l~~~~g~~~~~~~~ 81 (591)
++++||||||||+|+++ |++++ .|+||+.+|+++||+|+++|++|++||||||+|||||+|+.+|.++ |++.+++++
T Consensus 20 ~~~lilDGgmGT~Le~~-g~~~~-~~lws~~~ll~~Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~~-g~~~~~~~~ 96 (335)
T PLN02489 20 GGCAVIDGGFATELERH-GADLN-DPLWSAKCLITSPHLIRKVHLDYLEAGADIIITASYQATIQGFESR-GLSREESET 96 (335)
T ss_pred CCEEEEEChHHHHHHhC-CCCCC-CCccchhhhcCCHHHHHHHHHHHHHhCCCEEEecccccCHHHHHHc-CCCHHHHHH
Confidence 35899999999999998 99875 6899999999999999999999999999999999999999999884 998889999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCccccccccccCCCCCccCCCCcccCccchhhhhhhHhhhhccccCCCCcceeE
Q psy17603 82 LIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILI 161 (591)
Q Consensus 82 l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~va~~~gp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 161 (591)
++++||+|||+|++++..+. +.+.+ + ...+...+++++|
T Consensus 97 l~~~av~lA~~a~~~~~~~~------------------~~~~~----------~-------------~~~~~~~~~~~~V 135 (335)
T PLN02489 97 LLRKSVEIACEARDIFWDKC------------------QKGST----------S-------------RPGRELSYRPILV 135 (335)
T ss_pred HHHHHHHHHHHHHHHHhhhc------------------ccccc----------c-------------ccccccCCCCcEE
Confidence 99999999999998631100 00000 0 0001112346999
Q ss_pred eeccCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcC-CCceEEEE
Q psy17603 162 AGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWP-HQKAWLSF 240 (591)
Q Consensus 162 agsiGP~ga~l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~-~~pv~vSf 240 (591)
+|||||||+++.+|+||+|+|..++++++++++|++|++.|+++|||+|+|||||++.|++++++++++.. ++|+||||
T Consensus 136 aGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~ 215 (335)
T PLN02489 136 AASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISF 215 (335)
T ss_pred EEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEE
Confidence 99999999999999999999987789999999999999999999999999999999999999999999753 69999999
Q ss_pred EecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHH
Q psy17603 241 SCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQM 320 (591)
Q Consensus 241 ~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~ 320 (591)
++.+++++++|+++.+++..+.. ..++++||+||++|+.+.++++.+...
T Consensus 216 t~~~~~~l~~G~~~~~~~~~~~~--~~~~~~iGiNC~~p~~~~~~l~~l~~~---------------------------- 265 (335)
T PLN02489 216 NSKDGVNVVSGDSLLECASIADS--CKKVVAVGINCTPPRFIHGLILSIRKV---------------------------- 265 (335)
T ss_pred EeCCCCccCCCCcHHHHHHHHHh--cCCceEEEecCCCHHHHHHHHHHHHhh----------------------------
Confidence 99999999999999999988742 357899999999999999999988654
Q ss_pred HHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeec--CCCChHHHHHHHHHHHhcCCcEEeecCCCCHHHH
Q psy17603 321 LCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWI--DRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDT 398 (591)
Q Consensus 321 a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~--~~~~~~~~~~~~~~~~~~Gv~~VGgcCgtgP~~i 398 (591)
...||++|||+|.+||...+.|. +..+|+.|++++++|.+.|+.+|||||||+|+||
T Consensus 266 ---------------------~~~pl~vyPNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~iIGGCCgt~P~hI 324 (335)
T PLN02489 266 ---------------------TSKPIVVYPNSGETYDGEAKEWVESTGVSDEDFVSYVNKWRDAGASLIGGCCRTTPNTI 324 (335)
T ss_pred ---------------------cCCcEEEECCCCCCCCCccCcccCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCCHHHH
Confidence 14699999999999988778885 4457899999999999999999999999999999
Q ss_pred HHHHHHhhh
Q psy17603 399 LHMKHRLDD 407 (591)
Q Consensus 399 ~~l~~~l~~ 407 (591)
++|++.++.
T Consensus 325 ~al~~~l~~ 333 (335)
T PLN02489 325 RAISKALSE 333 (335)
T ss_pred HHHHHHHhc
Confidence 999998854
No 2
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=100.00 E-value=3.2e-66 Score=537.73 Aligned_cols=291 Identities=44% Similarity=0.739 Sum_probs=264.6
Q ss_pred ceEEEeccHHHHHHhccCCCCCCCCCcchhhhccCHHHHHHHHHHHHHHhcceeeccccccChhchhhhcCCChHHHHHH
Q psy17603 3 NVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQL 82 (591)
Q Consensus 3 ~~lilDGg~gT~L~~~~g~~~~~~~lWs~~~l~~~Pe~v~~vH~~yl~AGAdiI~TnTy~as~~~l~~~~g~~~~~~~~l 82 (591)
+++||||||||+|+++ |+++. .|+||+.+|+++||+|+++|++|++||||||+|||||+|+.+|+++ |++.++++++
T Consensus 12 ~~lilDGgmGT~L~~~-g~~~~-~~~ws~~~l~~~Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~-g~~~~~~~~l 88 (304)
T PRK09485 12 PVLILDGALATELEAR-GCDLN-DSLWSAKVLLENPELIYQVHLDYFRAGADCAITASYQATFQGFAAR-GLSEAEAEEL 88 (304)
T ss_pred CEEEEeChHHHHHHHc-CCCCC-CcchhhhhhccChHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHc-CCCHHHHHHH
Confidence 4899999999999998 98775 6899999999999999999999999999999999999999999874 9977899999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCccccccccccCCCCCccCCCCcccCccchhhhhhhHhhhhccccCCCCcceeEe
Q psy17603 83 IKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIA 162 (591)
Q Consensus 83 ~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~va~~~gp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Va 162 (591)
|++||+||++|++++. +.+++|+
T Consensus 89 ~~~av~lA~~a~~~~~---------------------------------------------------------~~~~~Va 111 (304)
T PRK09485 89 IRRSVELAKEARDEFW---------------------------------------------------------AEKPLVA 111 (304)
T ss_pred HHHHHHHHHHHHHhhc---------------------------------------------------------cCCceEE
Confidence 9999999999987610 1148999
Q ss_pred eccCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHH-hcCCCceEEEEE
Q psy17603 163 GSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLR-EWPHQKAWLSFS 241 (591)
Q Consensus 163 gsiGP~ga~l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~-~~~~~pv~vSf~ 241 (591)
|||||+|+++++|+||+|+|. +++++++++|++|+++|+++|||+|+||||+++.|+++++++++ ..+++|+|+||+
T Consensus 112 GsiGP~g~~l~~~~~y~g~~~--~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~pv~is~~ 189 (304)
T PRK09485 112 GSVGPYGAYLADGSEYRGDYG--LSEEELQDFHRPRIEALAEAGADLLACETIPNLDEAEALVELLKEEFPGVPAWLSFT 189 (304)
T ss_pred EecCCcccccCCCCCCCCCCC--CCHHHHHHHHHHHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999999999999999985 89999999999999999999999999999999999999999999 445899999999
Q ss_pred ecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHH
Q psy17603 242 CKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQML 321 (591)
Q Consensus 242 ~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a 321 (591)
|.+++++++|+++++++..+.. ...+++||+||++|+.+.++++.+...
T Consensus 190 ~~~~g~l~~G~~~~~~~~~l~~--~~~~~~iGiNC~~p~~~~~~l~~~~~~----------------------------- 238 (304)
T PRK09485 190 LRDGTHISDGTPLAEAAALLAA--SPQVVAVGVNCTAPELVTAAIAALRAV----------------------------- 238 (304)
T ss_pred eCCCCcCCCCCCHHHHHHHHhc--CCCceEEEecCCCHHHHHHHHHHHHhc-----------------------------
Confidence 9999999999999999999842 346899999999999999999988543
Q ss_pred HHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCCCCHHHHHHH
Q psy17603 322 CRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHM 401 (591)
Q Consensus 322 ~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCgtgP~~i~~l 401 (591)
.+.|+++|||+|.+|+..++.|....+++.|++.+++|.+.|+++|||||||+|+||++|
T Consensus 239 --------------------~~~pl~~~PNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGttP~hI~al 298 (304)
T PRK09485 239 --------------------TDKPLVVYPNSGEVYDAVTKTWHGPADDASLGELAPEWYAAGARLIGGCCRTTPEDIAAL 298 (304)
T ss_pred --------------------cCCcEEEECCCCCCCCCCCCcccCCCChHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHHH
Confidence 146999999999999887777876666668999999999999999999999999999999
Q ss_pred HHHhh
Q psy17603 402 KHRLD 406 (591)
Q Consensus 402 ~~~l~ 406 (591)
++.++
T Consensus 299 ~~~l~ 303 (304)
T PRK09485 299 AAALK 303 (304)
T ss_pred HHHhh
Confidence 98764
No 3
>KOG1579|consensus
Probab=100.00 E-value=6.8e-66 Score=517.04 Aligned_cols=296 Identities=39% Similarity=0.686 Sum_probs=268.1
Q ss_pred ceEEEeccHHHHHHhccCCCCCCCCCcchhhhccCHHHHHHHHHHHHHHhcceeeccccccChhchhhhcCCChHHHHHH
Q psy17603 3 NVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQL 82 (591)
Q Consensus 3 ~~lilDGg~gT~L~~~~g~~~~~~~lWs~~~l~~~Pe~v~~vH~~yl~AGAdiI~TnTy~as~~~l~~~~g~~~~~~~~l 82 (591)
+++|+||||||+|+++ |++-.+.||||+.+++++||+|+++|++||+||||||+|||||+|..++.++ .+.++..++
T Consensus 18 ~vlvlDGG~~t~Ler~-g~~~~~~PlWs~~~~~s~Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~--~~~~~~~el 94 (317)
T KOG1579|consen 18 RVLVLDGGFGTQLERR-GYDKVDSPLWSAEALASNPEAVEQVHKEFLRAGADIISTNTYQASSDGFEEY--VEEEELIEL 94 (317)
T ss_pred cEEEEeChHHHHHHhh-cccccCCCCCCchhhccChHHHHHHHHHHHHccCcEEEEeeeeecchHHhhh--hhhHHHHHH
Confidence 5899999999999999 9874347999999999999999999999999999999999999999999885 457889999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCccccccccccCCCCCccCCCCcccCccchhhhhhhHhhhhccccCCCCcceeEe
Q psy17603 83 IKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIA 162 (591)
Q Consensus 83 ~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~va~~~gp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Va 162 (591)
++.++++|+.|++. |..+ .-+|+
T Consensus 95 ~~~s~~~a~~Are~--------------------------------------~~~~-------------------~~~v~ 117 (317)
T KOG1579|consen 95 YEKSVELADLARER--------------------------------------LGEE-------------------TGYVA 117 (317)
T ss_pred HHHHHHHHHHHHHH--------------------------------------hccc-------------------cceee
Confidence 99999999999876 2111 12899
Q ss_pred eccCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhc-CCCceEEEEE
Q psy17603 163 GSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREW-PHQKAWLSFS 241 (591)
Q Consensus 163 gsiGP~ga~l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~-~~~pv~vSf~ 241 (591)
||+||+|+.+++|+||+|.|.++++++++++||++|++.|+++|||+|+|||+|+..||+++++++++. +++|+||||+
T Consensus 118 gsiGp~~A~l~~g~eytg~Y~~~~~~~el~~~~k~qle~~~~~gvD~L~fETip~~~EA~a~l~~l~~~~~~~p~~is~t 197 (317)
T KOG1579|consen 118 GSIGPYGATLADGSEYTGIYGDNVEFEELYDFFKQQLEVFLEAGVDLLAFETIPNVAEAKAALELLQELGPSKPFWISFT 197 (317)
T ss_pred eecccccceecCCcccccccccccCHHHHHHHHHHHHHHHHhCCCCEEEEeecCCHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 8999999999
Q ss_pred ecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHH
Q psy17603 242 CKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQML 321 (591)
Q Consensus 242 ~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a 321 (591)
|.+.+++++|+++++++..+. ++.++.+|||||++|..+.++++.|...
T Consensus 198 ~~d~g~l~~G~t~e~~~~~~~--~~~~~~~IGvNC~~~~~~~~~~~~L~~~----------------------------- 246 (317)
T KOG1579|consen 198 IKDEGRLRSGETGEEAAQLLK--DGINLLGIGVNCVSPNFVEPLLKELMAK----------------------------- 246 (317)
T ss_pred ecCCCcccCCCcHHHHHHHhc--cCCceEEEEeccCCchhccHHHHHHhhc-----------------------------
Confidence 999999999999999999763 3446999999999999999998887621
Q ss_pred HHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCC-ChHHHHHHHHHHHhcCCcEEeecCCCCHHHHHH
Q psy17603 322 CRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRD-LCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLH 400 (591)
Q Consensus 322 ~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~Gv~~VGgcCgtgP~~i~~ 400 (591)
-.+.||+||||+|+.||...|.|.... ..++|..++++|.++||++|||||+|+|.||++
T Consensus 247 -------------------~~~~~llvYPNsGe~yd~~~g~~~~~~~~~~~~~~~~~~~~~lGv~iIGGCCrt~P~~I~a 307 (317)
T KOG1579|consen 247 -------------------LTKIPLLVYPNSGEVYDNEKGGWIPTPFGLEPWQTYVKKAIDLGVRIIGGCCRTTPKHIRA 307 (317)
T ss_pred -------------------cCCCeEEEecCCCCCCccccCcccCCCcccchHHHHHHHHHhcccceeCcccCCChHHHHH
Confidence 125899999999999999999898653 346788999999999999999999999999999
Q ss_pred HHHHhhhc
Q psy17603 401 MKHRLDDW 408 (591)
Q Consensus 401 l~~~l~~~ 408 (591)
|++.+++.
T Consensus 308 I~e~v~~~ 315 (317)
T KOG1579|consen 308 IAEAVKKY 315 (317)
T ss_pred HHHHhhcc
Confidence 99988764
No 4
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-66 Score=510.59 Aligned_cols=292 Identities=38% Similarity=0.703 Sum_probs=265.7
Q ss_pred CCceEEEeccHHHHHHhccCCCCCCCCCcchhhhccCHHHHHHHHHHHHHHhcceeeccccccChhchhhhcCCChHHHH
Q psy17603 1 MANVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSY 80 (591)
Q Consensus 1 ~~~~lilDGg~gT~L~~~~g~~~~~~~lWs~~~l~~~Pe~v~~vH~~yl~AGAdiI~TnTy~as~~~l~~~~g~~~~~~~ 80 (591)
|..++||||||+|+|++| |.++. +||||+.+++++||+|+++|.+|++||||||+|+|||+++.++++. .+.+++.
T Consensus 7 ~~~vliLDGG~~tELe~r-G~~l~-~plWSa~~l~~~peiv~~vh~df~~aGa~ii~T~TYqa~~~~~~e~--~~~~~~~ 82 (300)
T COG2040 7 TLSVLILDGGLATELERR-GCDLS-DPLWSALALVDEPEIVRNVHADFLRAGADIITTATYQATPEGFAER--VSEDEAK 82 (300)
T ss_pred cCCEEEecCchhHHHHhc-CCCCC-chhhhhhhcccCHHHHHHHHHHHHHhcCcEEeehhhhcCHHHHHHh--cchhHHH
Confidence 456899999999999999 99986 6899999999999999999999999999999999999999999985 6688999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCccccccccccCCCCCccCCCCcccCccchhhhhhhHhhhhccccCCCCccee
Q psy17603 81 QLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDIL 160 (591)
Q Consensus 81 ~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~va~~~gp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (591)
++++.+|+|||+|++. |.. .+..
T Consensus 83 ~l~~~sv~la~~ard~--------------------------------------~g~-------------------~~~~ 105 (300)
T COG2040 83 QLIRRSVELARAARDA--------------------------------------YGE-------------------ENQN 105 (300)
T ss_pred HHHHHHHHHHHHHHHH--------------------------------------hcc-------------------cccc
Confidence 9999999999999987 221 1134
Q ss_pred EeeccCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEE
Q psy17603 161 IAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSF 240 (591)
Q Consensus 161 VagsiGP~ga~l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf 240 (591)
|+||+||||+++++ ||+|+|. .+.+.+++||++|++++.++|||+|.+||+|++.|+++++++++++ ++|+||||
T Consensus 106 iagsiGP~ga~~a~--Ey~g~Y~--~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~Ea~Aiv~l~~~~-s~p~wISf 180 (300)
T COG2040 106 IAGSLGPYGAALAD--EYRGDYG--ASQDALYKFHRPRIEALNEAGADLLACETLPNITEAEAIVQLVQEF-SKPAWISF 180 (300)
T ss_pred cceeccchhhhcCh--hhcCccC--ccHHHHHHHHHHHHHHHHhCCCcEEeecccCChHHHHHHHHHHHHh-CCceEEEE
Confidence 89999999999998 9999996 6888899999999999999999999999999999999999999998 99999999
Q ss_pred EecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHH
Q psy17603 241 SCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQM 320 (591)
Q Consensus 241 ~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~ 320 (591)
|+++++++++|+++.+++..+.+ ..++.++||||++|+++..+++.+....
T Consensus 181 T~~d~~~lr~Gt~l~eaa~~~~~--~~~iaa~gvNC~~p~~~~a~i~~l~~~~--------------------------- 231 (300)
T COG2040 181 TLNDDTRLRDGTPLSEAAAILAG--LPNIAALGVNCCHPDHIPAAIEELSKLL--------------------------- 231 (300)
T ss_pred EeCCCCccCCCccHHHHHHHHhc--CcchhheeeccCChhhhHHHHHHHHhcC---------------------------
Confidence 99999999999999999998843 4689999999999999999999885331
Q ss_pred HHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeec-CCCChHHHHHHHHHHHhcCCcEEeecCCCCHHHHH
Q psy17603 321 LCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWI-DRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTL 399 (591)
Q Consensus 321 a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~Gv~~VGgcCgtgP~~i~ 399 (591)
..+|++||||+|+.||..++.|. ....++.+...+.+|.+.|+++|||||+|+|.||.
T Consensus 232 ---------------------~~~piivYPNSGe~~d~~~k~w~~p~~~~~~~~~~a~~w~~~GA~iiGGCCrt~p~~I~ 290 (300)
T COG2040 232 ---------------------TGKPIIVYPNSGEQYDPAGKTWHGPALSADSYSTLAKSWVEAGARIIGGCCRTGPAHIA 290 (300)
T ss_pred ---------------------CCCceEEcCCcccccCcCCCcCCCCCCchhHHHHHHHHHHhcccceeeeccCCChHHHH
Confidence 25899999999999999888888 55567888998999999999999999999999999
Q ss_pred HHHHHhhhc
Q psy17603 400 HMKHRLDDW 408 (591)
Q Consensus 400 ~l~~~l~~~ 408 (591)
++.+.+++.
T Consensus 291 ei~~~~~~~ 299 (300)
T COG2040 291 EIAKALKKA 299 (300)
T ss_pred HHHHHHhcc
Confidence 999988653
No 5
>PRK07534 methionine synthase I; Validated
Probab=100.00 E-value=2e-59 Score=490.86 Aligned_cols=283 Identities=23% Similarity=0.333 Sum_probs=243.2
Q ss_pred ceEEEeccHHHHHHhccCCCCCC-CCCcchhhhccCHHHHHHHHHHHHHHhcceeeccccccChhchhhhcCCChHHHHH
Q psy17603 3 NVKLIDGGFSSQLSTYVGDIIDG-HPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQ 81 (591)
Q Consensus 3 ~~lilDGg~gT~L~~~~g~~~~~-~~lWs~~~l~~~Pe~v~~vH~~yl~AGAdiI~TnTy~as~~~l~~~~g~~~~~~~~ 81 (591)
+++||||||||+|+++ |++++. .+||| +++||+|++||++|++||||||+|||||+|+.+|..+ | ..+++++
T Consensus 13 ~ililDGgmGTeL~~~-G~~~~~~~~lws----i~~Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~-~-~~~~~~~ 85 (336)
T PRK07534 13 GVLLADGATGTNLFNM-GLESGEAPELWN----EDHPDNITALHQGFVDAGSDIILTNSFGGTAARLKLH-D-AQDRVHE 85 (336)
T ss_pred CEEEEECHHHHHHHHC-CCCCCCCchHhc----ccCHHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhc-C-cHHHHHH
Confidence 4899999999999998 987653 25665 9999999999999999999999999999999998764 5 4888999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCccccccccccCCCCCccCCCCcccCccchhhhhhhHhhhhccccCCCCcceeE
Q psy17603 82 LIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILI 161 (591)
Q Consensus 82 l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~va~~~gp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 161 (591)
+|++||+|||+|++++ +++++|
T Consensus 86 l~~~av~lAr~a~~~~----------------------------------------------------------~~~~~V 107 (336)
T PRK07534 86 LNRAAAEIAREVADKA----------------------------------------------------------GRKVIV 107 (336)
T ss_pred HHHHHHHHHHHHHHhc----------------------------------------------------------CCccEE
Confidence 9999999999998650 124899
Q ss_pred eeccCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEE
Q psy17603 162 AGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFS 241 (591)
Q Consensus 162 agsiGP~ga~l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~ 241 (591)
+|||||||+++.++. +++.++++++|++|++.|+++|||+|++||||++.|++++++++++. ++|+||||+
T Consensus 108 aGsIGP~g~~l~~~~--------~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~p~l~E~~a~~~~~~~~-~~Pv~vSft 178 (336)
T PRK07534 108 AGSVGPTGEIMEPMG--------ALTHALAVEAFHEQAEGLKAGGADVLWVETISAPEEIRAAAEAAKLA-GMPWCGTMS 178 (336)
T ss_pred EEecCCCccccCCCC--------CCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHc-CCeEEEEEE
Confidence 999999999887642 36788999999999999999999999999999999999999999984 899999999
Q ss_pred ecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCC-chhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHH
Q psy17603 242 CKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVR-PLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQM 320 (591)
Q Consensus 242 ~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~-p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~ 320 (591)
+.+++++.+|++++++++.+.. ...++++||+||++ |+.+...+..+...
T Consensus 179 ~~~~g~l~~G~~~~~~~~~~~~-~~~~~~avGvNC~~gp~~~~~~l~~~~~~---------------------------- 229 (336)
T PRK07534 179 FDTAGRTMMGLTPADLADLVEK-LGEPPLAFGANCGVGASDLLRTVLGFTAQ---------------------------- 229 (336)
T ss_pred ECCCCeeCCCCcHHHHHHHHHh-cCCCceEEEecCCCCHHHHHHHHHHHHHh----------------------------
Confidence 9999999999999999999853 23467999999995 99875555443221
Q ss_pred HHHHHhhccccccccccccCCCCcceEEecCCCcc-eeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCCCCHHHHH
Q psy17603 321 LCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGER-YDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTL 399 (591)
Q Consensus 321 a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~-~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCgtgP~~i~ 399 (591)
..++|+++|||+|.+ |+ ++++.+..+|+.|+++++.|.+.||.+|||||||+|+||+
T Consensus 230 --------------------~~~~pl~vyPNaG~p~~~--~~~~~~~~~p~~~~~~~~~~~~~Ga~iIGGCCGTtP~hI~ 287 (336)
T PRK07534 230 --------------------GPERPIIAKGNAGIPKYV--DGHIHYDGTPELMAEYAVLARDAGARIIGGCCGTMPEHLA 287 (336)
T ss_pred --------------------cCCCeEEEEcCCCCcccC--CCccccCCCHHHHHHHHHHHHHcCCcEEeeecCCCHHHHH
Confidence 014699999999984 53 3556677789999999999999999999999999999999
Q ss_pred HHHHHhhhccc
Q psy17603 400 HMKHRLDDWVS 410 (591)
Q Consensus 400 ~l~~~l~~~~~ 410 (591)
+|++.++...+
T Consensus 288 ~la~~l~~~~~ 298 (336)
T PRK07534 288 AMRAALDARPR 298 (336)
T ss_pred HHHHHHccCCC
Confidence 99999976543
No 6
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=100.00 E-value=9e-63 Score=513.53 Aligned_cols=290 Identities=37% Similarity=0.690 Sum_probs=214.3
Q ss_pred eEEEeccHHHHHHhccCCCCCCCCCcchh-------hhccCHHHHHHHHHHHHHHhcceeeccccccChhchhhhcCCCh
Q psy17603 4 VKLIDGGFSSQLSTYVGDIIDGHPLWSSY-------FLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDY 76 (591)
Q Consensus 4 ~lilDGg~gT~L~~~~g~~~~~~~lWs~~-------~l~~~Pe~v~~vH~~yl~AGAdiI~TnTy~as~~~l~~~~g~~~ 76 (591)
||||||||||+|+++ |.+.. +++||.. +++++|++|+++|++|++||||||+|||||+|+.+|.++ |++.
T Consensus 1 ililDGgmGT~L~~~-g~~~~-~~~~s~~~~~~~~~~~~~~p~~v~~iH~~yl~AGAdiI~TnTy~a~~~~l~~~-g~~~ 77 (305)
T PF02574_consen 1 ILILDGGMGTELERR-GLDLN-DPLWSALSHPWNELLNIENPELVRQIHRDYLEAGADIITTNTYQASRERLKEY-GLSD 77 (305)
T ss_dssp -CTT--EEHHCCHHH-HHHHC-TSS----TTT-GGTHHHH-HHHHHHHHHHHHHHT-SEEEEC-TT-SHHHHGGG-T-GG
T ss_pred CEEeehhhHHHHHhC-CcCcc-ccccccccccchHhhhccCHHHHHHHHHHHHHCCCCeEEecCCcCchhhhhhc-CCcH
Confidence 689999999999999 88764 6888744 788999999999999999999999999999999999985 9966
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccccccccccCCCCCccCCCCcccCccchhhhhhhHhhhhccccCCCC
Q psy17603 77 DSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPA 156 (591)
Q Consensus 77 ~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~va~~~gp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (591)
+.++++|++||++||+|++.+. ..
T Consensus 78 ~~~~~l~~~av~lA~~a~~~~~--------------------------------------------------------~~ 101 (305)
T PF02574_consen 78 EEAEELNRAAVELAREAADEYG--------------------------------------------------------SG 101 (305)
T ss_dssp GCHHHHHHHHHHHHHHHHTT-----------------------------------------------------------T
T ss_pred HHHHHHHHHHHHHHHHHHhhcc--------------------------------------------------------CC
Confidence 6669999999999999987621 12
Q ss_pred cceeEeeccCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCce
Q psy17603 157 RDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKA 236 (591)
Q Consensus 157 ~~~~VagsiGP~ga~l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv 236 (591)
++++|+||+||||++++ |+||+|+|. ++.++++++|++|++.|+++|||+|++||||++.|++++++++++++++|+
T Consensus 102 ~~~~VaGsiGP~ga~l~-g~~y~~~~~--~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~p~ 178 (305)
T PF02574_consen 102 RKVLVAGSIGPYGAYLS-GSEYPGDYG--LSFEELRDFHREQAEALADAGVDLLLFETMPSLAEAKAALEAIKEVTGLPV 178 (305)
T ss_dssp T-SEEEEEEE--S---------CTTCT--T-HHHHHHHHHHHHHHHHHTT-SEEEEEEEC-CSCHHHHHHHHHHHHHCCS
T ss_pred CccEEEEEcccccccch-hhhcccccc--ccHHHHHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHHhhhhhhc
Confidence 34899999999999999 999999985 799999999999999999999999999999999999999999999778999
Q ss_pred EEEEEecCCCcccCCCCHHHHHHHHHhhC---CCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeeccc
Q psy17603 237 WLSFSCKDDKHISNGESFTQVARTCYNMN---PDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIP 313 (591)
Q Consensus 237 ~vSf~~~~~g~l~~G~~~~~~~~~~~~~~---~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~ 313 (591)
||||++.+++++.+|+++.+++..+.... ..++++||+||++|..+...+..+....
T Consensus 179 ~is~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~iGvNC~~~~~~~~~l~~~~~~~-------------------- 238 (305)
T PF02574_consen 179 WISFSCKDSGRLRDGTSLEDAVQVIDELLRALPPGPDAIGVNCTSPPEIMKALLELMSAT-------------------- 238 (305)
T ss_dssp SEEE-EEEEES-TCTTBCTTSHHHHHHHHHHHCTT-SEEEEESSS-HHHHHHHHHHHHHH--------------------
T ss_pred eeccchhhhccccCCCCHHHHHHHHHHHHHHhhhhhheEEcCCCCcHHHHhHHHHHHhcc--------------------
Confidence 99999999999999999988888765321 3689999999999887766666554320
Q ss_pred ccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHH----HHHHHHHHHhcCCcEEee
Q psy17603 314 ASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEP----VDKYVTDWLDEGVALVGG 389 (591)
Q Consensus 314 d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~----~~~~~~~~~~~Gv~~VGg 389 (591)
.+.||++|||+|.+++.. ..|. .+|+. +..++++|.+.|+.+|||
T Consensus 239 ----------------------------~~~~l~vyPNsG~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~G~~iiGG 287 (305)
T PF02574_consen 239 ----------------------------HDIPLIVYPNSGEPYDVG-KVWS--ETPEDFAPEWAEFVKEWVEAGARIIGG 287 (305)
T ss_dssp ----------------------------T-SEEEEE--SBS-TTSS-GGST--TTTTSHGGG-HHHHHHHHHHHHCEE--
T ss_pred ----------------------------CCceEEEecCCCCCcccc-cccc--cchhhhHHHHHHHHHHHHHhCCEEEEe
Confidence 147999999999998764 3343 23333 566999999999999999
Q ss_pred cCCCCHHHHHHHHHHhh
Q psy17603 390 CCRTYAEDTLHMKHRLD 406 (591)
Q Consensus 390 cCgtgP~~i~~l~~~l~ 406 (591)
||||+|+||++|++.++
T Consensus 288 CCGt~P~hI~al~~~l~ 304 (305)
T PF02574_consen 288 CCGTTPEHIRALAKALD 304 (305)
T ss_dssp -TT--HHHHHHHHHHTH
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999999875
No 7
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-59 Score=465.93 Aligned_cols=284 Identities=26% Similarity=0.409 Sum_probs=249.3
Q ss_pred CceEEEeccHHHHHHhccCCCCC------CCCCcchhhhccCHHHHHHHHHHHHHHhcceeeccccccChhchhhhcCCC
Q psy17603 2 ANVKLIDGGFSSQLSTYVGDIID------GHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLD 75 (591)
Q Consensus 2 ~~~lilDGg~gT~L~~~~g~~~~------~~~lWs~~~l~~~Pe~v~~vH~~yl~AGAdiI~TnTy~as~~~l~~~~g~~ 75 (591)
++|||+||||||+|++. |++-. +. .+.+|+++||+|++||++|++||||||.||||++|+.+|++| ++
T Consensus 14 ~rVLv~DGAmGT~lq~~-~l~~~df~g~~g~---nE~LnlT~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~lady-~l- 87 (311)
T COG0646 14 ERVLVLDGAMGTMLQSY-GLDEADFRGLKGN---NELLNLTKPDVIEAIHRAYIEAGADIIETNTFGATTIKLADY-GL- 87 (311)
T ss_pred cCEEEeechhhhhHHhc-CCcHHhhccccCC---hHHHhcCCcHHHHHHHHHHHhccCcEEEecCCCcchhhHhhh-Ch-
Confidence 46999999999999998 77532 33 499999999999999999999999999999999999999986 88
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccccccccccCCCCCccCCCCcccCccchhhhhhhHhhhhccccCCC
Q psy17603 76 YDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDP 155 (591)
Q Consensus 76 ~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~va~~~gp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (591)
++++++||++|++|||+|++++. .+
T Consensus 88 ed~v~~in~~aa~iAR~aA~~~~-------------------------------------------------------~~ 112 (311)
T COG0646 88 EDKVYEINQKAARIARRAADEAG-------------------------------------------------------DP 112 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC-------------------------------------------------------CC
Confidence 89999999999999999998711 01
Q ss_pred CcceeEeeccCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCC--
Q psy17603 156 ARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPH-- 233 (591)
Q Consensus 156 ~~~~~VagsiGP~ga~l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~-- 233 (591)
+++||+||+||.+..++. +|++ .+++|++++.|++|++.|++.|||+|++||+.++.++|+++.++++...
T Consensus 113 -k~rfVaGsiGPt~k~~~~----~~~~--~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~ 185 (311)
T COG0646 113 -KPRFVAGSIGPTNKTLSI----SPDF--AVTFDELVEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEEL 185 (311)
T ss_pred -CceEEEEeccCcCCcCCc----CCcc--cccHHHHHHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhc
Confidence 468999999999865554 2322 4899999999999999999999999999999999999999999996543
Q ss_pred ---CceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecC-CCchhhHHHHHHHHhcCCceEEecCCCCcccee
Q psy17603 234 ---QKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNC-VRPLMVSSLIEQLKTENIPLVVYPNSGEHILAI 309 (591)
Q Consensus 234 ---~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC-~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~i 309 (591)
+|+++|.++.+.|++++|.+++++...+. +.++++||+|| .+|+.|++.++.+...
T Consensus 186 ~~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~---~~~~~~vGlNCa~Gp~~m~~~l~~ls~~----------------- 245 (311)
T COG0646 186 GVRLPVMISGTITDSGRTLSGQTIEAFLNSLE---HLGPDAVGLNCALGPDEMRPHLRELSRI----------------- 245 (311)
T ss_pred CCcccEEEEEEEecCceecCCCcHHHHHHHhh---ccCCcEEeeccccCHHHHHHHHHHHHhc-----------------
Confidence 89999999999999999999999988874 46799999999 7899999999988764
Q ss_pred ecccccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcC-CcEEe
Q psy17603 310 ETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEG-VALVG 388 (591)
Q Consensus 310 ET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~G-v~~VG 388 (591)
.+.+|.+|||+|.|- ..+++..+..+|+.++..++.|...| +++||
T Consensus 246 --------------------------------~~~~vs~~PNAGLP~-~~g~~~~Y~~~p~~~a~~~~~f~~~g~vnIvG 292 (311)
T COG0646 246 --------------------------------ADAFVSVYPNAGLPN-AFGERAVYDLTPEYMAEALAEFAEEGGVNIVG 292 (311)
T ss_pred --------------------------------cCceEEEeCCCCCCc-ccCCccccCCCHHHHHHHHHHHHHhCCceeec
Confidence 146788999999873 33667888999999999999999877 99999
Q ss_pred ecCCCCHHHHHHHHHHhh
Q psy17603 389 GCCRTYAEDTLHMKHRLD 406 (591)
Q Consensus 389 gcCgtgP~~i~~l~~~l~ 406 (591)
|||||+|+||+++++.++
T Consensus 293 GCCGTTPeHIraia~~v~ 310 (311)
T COG0646 293 GCCGTTPEHIRAIAEAVK 310 (311)
T ss_pred cccCCCHHHHHHHHHHhc
Confidence 999999999999998764
No 8
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=100.00 E-value=3e-56 Score=522.66 Aligned_cols=295 Identities=21% Similarity=0.346 Sum_probs=255.7
Q ss_pred CceEEEeccHHHHHHhccCCCC---CC--CCCcc-------hhhhccCHHHHHHHHHHHHHHhcceeeccccccChhchh
Q psy17603 2 ANVKLIDGGFSSQLSTYVGDII---DG--HPLWS-------SYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFM 69 (591)
Q Consensus 2 ~~~lilDGg~gT~L~~~~g~~~---~~--~~lWs-------~~~l~~~Pe~v~~vH~~yl~AGAdiI~TnTy~as~~~l~ 69 (591)
+++|||||||||+|+++ |++. .+ -++|| +.+|+++||+|++||++|++||||||+|||||+|+.+|.
T Consensus 17 ~riLIlDGAMGT~Lq~~-gl~~~d~~g~~~~~ws~~l~~~~e~l~lt~Pe~I~~IH~~Yl~AGADII~TNTF~a~~~~L~ 95 (1229)
T PRK09490 17 ERILVLDGAMGTMIQRY-KLEEADYRGERFADWPCDLKGNNDLLVLTQPDVIEAIHRAYLEAGADIIETNTFNATTIAQA 95 (1229)
T ss_pred CCeEEEECcchHHHHHc-CCChhhccccccccccccccCCchhhhcCCHHHHHHHHHHHHHHhCceeecCCCCCCHHHHh
Confidence 46899999999999998 8742 11 14564 689999999999999999999999999999999999998
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccccccccccCCCCCccCCCCcccCccchhhhhhhHhhhhc
Q psy17603 70 EFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHR 149 (591)
Q Consensus 70 ~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~va~~~gp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 149 (591)
++ |+ .++++++|++||+|||+|++++.+ +
T Consensus 96 ~y-gl-~~~~~eln~~av~LAreAa~~~~~--------------------------------------~----------- 124 (1229)
T PRK09490 96 DY-GM-ESLVYELNFAAARLAREAADEWTA--------------------------------------K----------- 124 (1229)
T ss_pred hC-Ch-HHHHHHHHHHHHHHHHHHHHHhhh--------------------------------------c-----------
Confidence 85 88 688999999999999999987310 0
Q ss_pred cccCCCCcceeEeeccCCCCC--CCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHH
Q psy17603 150 LITDDPARDILIAGSVGPYGA--SLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRL 227 (591)
Q Consensus 150 ~~~~~~~~~~~VagsiGP~ga--~l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a 227 (591)
.++++++|||||||+|. ++.|++||.| |. .+++++++++|++|+++|+++|||+|++|||+++.|+++++.+
T Consensus 125 ----~~~~~~~VAGSIGP~g~~~sl~p~~e~pg-~~-~it~del~~~y~eQi~~L~e~GVDllliETi~d~~EakAal~a 198 (1229)
T PRK09490 125 ----TPDKPRFVAGVLGPTNRTASISPDVNDPG-FR-NVTFDELVAAYREQTRGLIEGGADLILIETIFDTLNAKAAIFA 198 (1229)
T ss_pred ----cCCCceEEEEecCCCCcccccCCCccccc-cc-CCCHHHHHHHHHHHHHHHHhCCCCEEEEeeeCCHHHHHHHHHH
Confidence 01345899999999995 4669999988 43 5899999999999999999999999999999999999999999
Q ss_pred HHhc-----CCCceEEEEEecC-CCcccCCCCHHHHHHHHHhhCCCCeEEEEecCC-CchhhHHHHHHHHhcCCceEEec
Q psy17603 228 LREW-----PHQKAWLSFSCKD-DKHISNGESFTQVARTCYNMNPDQLIAVGVNCV-RPLMVSSLIEQLKTENIPLVVYP 300 (591)
Q Consensus 228 ~~~~-----~~~pv~vSf~~~~-~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~-~p~~i~~~l~~l~~~~~~i~~l~ 300 (591)
++++ +++|+||||+|.+ +|++.+|+++++++..+. ..++++||+||+ +|+.|.++++.+...
T Consensus 199 ~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~ea~~~~l~---~~~~~avGlNCs~GP~~m~~~l~~l~~~-------- 267 (1229)
T PRK09490 199 VEEVFEELGVRLPVMISGTITDASGRTLSGQTTEAFWNSLR---HAKPLSIGLNCALGADELRPYVEELSRI-------- 267 (1229)
T ss_pred HHHHHhhcCCCCeEEEEEEEECCCCccCCCCcHHHHHHHHh---cCCCCEEEEcCCCcHHHHHHHHHHHHHh--------
Confidence 9865 5789999999965 799999999999888773 467899999998 699999999998654
Q ss_pred CCCCccceeecccccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHH
Q psy17603 301 NSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWL 380 (591)
Q Consensus 301 ~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~ 380 (591)
.+.||+||||+|.+.. .+ .+..+|++|++++++|.
T Consensus 268 -----------------------------------------~~~pi~vyPNAGlP~~--~~--~yd~tPe~~a~~~~~~~ 302 (1229)
T PRK09490 268 -----------------------------------------ADTYVSAHPNAGLPNA--FG--EYDETPEEMAAQIGEFA 302 (1229)
T ss_pred -----------------------------------------cCCeEEEEeCCCCCCC--CC--CCCCCHHHHHHHHHHHH
Confidence 1479999999998742 22 45678999999999999
Q ss_pred hcC-CcEEeecCCCCHHHHHHHHHHhhhccc
Q psy17603 381 DEG-VALVGGCCRTYAEDTLHMKHRLDDWVS 410 (591)
Q Consensus 381 ~~G-v~~VGgcCgtgP~~i~~l~~~l~~~~~ 410 (591)
+.| +++|||||||+|+||++|++.++...+
T Consensus 303 ~~G~v~IIGGCCGTtPeHI~ala~~l~~~~p 333 (1229)
T PRK09490 303 ESGFLNIVGGCCGTTPEHIAAIAEAVAGLPP 333 (1229)
T ss_pred HcCCCCEEEecCCCCHHHHHHHHHHHhcCCC
Confidence 999 999999999999999999999987654
No 9
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=100.00 E-value=1.6e-55 Score=518.59 Aligned_cols=293 Identities=19% Similarity=0.296 Sum_probs=255.8
Q ss_pred CceEEEeccHHHHHHhccCCCCCCCCCcc------------hhhhccCHHHHHHHHHHHHHHhcceeeccccccChhchh
Q psy17603 2 ANVKLIDGGFSSQLSTYVGDIIDGHPLWS------------SYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFM 69 (591)
Q Consensus 2 ~~~lilDGg~gT~L~~~~g~~~~~~~lWs------------~~~l~~~Pe~v~~vH~~yl~AGAdiI~TnTy~as~~~l~ 69 (591)
+++|||||||||+||++ |++.+ +++|+ +.+++++||+|++||++|++||||||+|||||+|+.+|.
T Consensus 3 ~rilvlDGamGT~Lq~~-gl~~~-d~~g~~~~~~~~~~~~~e~l~lt~Pe~I~~IH~~Yl~AGAdII~TNTF~a~~~~L~ 80 (1178)
T TIGR02082 3 QRILVLDGAMGTQLQSA-NLTEA-DFRGAEFTCHRELKGNNDILNLTKPEVIATIHRAYFEAGADIIETNTFNSTTISQA 80 (1178)
T ss_pred CceEEEEChhHHHHHhC-CCCcc-ccCcccccccccccCCcHHhhcCCHHHHHHHHHHHHHHhchheecCCccCCHHHHh
Confidence 46999999999999999 99875 78996 899999999999999999999999999999999999998
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccccccccccCCCCCccCCCCcccCccchhhhhhhHhhhhc
Q psy17603 70 EFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHR 149 (591)
Q Consensus 70 ~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~va~~~gp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 149 (591)
++ |+ .++++++|++|++|||+|++++.+
T Consensus 81 ~y-g~-~~~~~eln~~av~lAr~Aa~~~~~-------------------------------------------------- 108 (1178)
T TIGR02082 81 DY-DL-EDLIYDLNFKGAKLARAVADEFTL-------------------------------------------------- 108 (1178)
T ss_pred hC-CH-HHHHHHHHHHHHHHHHHHHHhhcc--------------------------------------------------
Confidence 85 88 788999999999999999987210
Q ss_pred cccCCCCcceeEeeccCCCCCC--CCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHH
Q psy17603 150 LITDDPARDILIAGSVGPYGAS--LRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRL 227 (591)
Q Consensus 150 ~~~~~~~~~~~VagsiGP~ga~--l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a 227 (591)
.++++++|||||||+|.. +.++.||.| |. .+++++++++|++|++.|+++|||+|++|||+++.|+++++.+
T Consensus 109 ----~~~~~~~VAGsIGP~g~~~~lgp~~~~~~-~~-~~t~del~~~y~eq~~~L~~~GvD~iliETi~d~~EakAal~a 182 (1178)
T TIGR02082 109 ----TPEKPRFVAGSMGPTNKTATLSPDVERPG-FR-NVTYDELVDAYTEQAKGLLDGGVDLLLIETCFDTLNAKAALFA 182 (1178)
T ss_pred ----cCCCceEEEEEeCCCCCCccCCCccccCc-cC-CCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHH
Confidence 013458999999999975 455666665 65 5899999999999999999999999999999999999999999
Q ss_pred HHhc-----CCCceEEEEE-ecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCC-CchhhHHHHHHHHhcCCceEEec
Q psy17603 228 LREW-----PHQKAWLSFS-CKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCV-RPLMVSSLIEQLKTENIPLVVYP 300 (591)
Q Consensus 228 ~~~~-----~~~pv~vSf~-~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~-~p~~i~~~l~~l~~~~~~i~~l~ 300 (591)
+++. +++|+|||++ ++++|++.+|+++++++..+. ..++++||+||+ +|+.|.++++.+...
T Consensus 183 ~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~~~~~l~---~~~~~avGlNCs~gP~~m~~~l~~l~~~-------- 251 (1178)
T TIGR02082 183 AETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEAFLTSLE---HAGIDMIGLNCALGPDEMRPHLKHLSEH-------- 251 (1178)
T ss_pred HHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHHHHHHHh---cCCCCEEEeCCCCCHHHHHHHHHHHHHh--------
Confidence 9964 5789999955 567899999999999998873 468899999998 799999999998654
Q ss_pred CCCCccceeecccccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHH
Q psy17603 301 NSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWL 380 (591)
Q Consensus 301 ~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~ 380 (591)
.+.||+||||+|.+... + .+..+|+.|++.+++|.
T Consensus 252 -----------------------------------------~~~pi~vyPNAGlP~~~--~--~yd~~p~~~a~~~~~~~ 286 (1178)
T TIGR02082 252 -----------------------------------------AEAYVSCHPNAGLPNAF--G--EYDLTPDELAKALADFA 286 (1178)
T ss_pred -----------------------------------------cCceEEEEeCCCCCCCC--C--cccCCHHHHHHHHHHHH
Confidence 14799999999987532 3 35568999999999999
Q ss_pred hc-CCcEEeecCCCCHHHHHHHHHHhhhccc
Q psy17603 381 DE-GVALVGGCCRTYAEDTLHMKHRLDDWVS 410 (591)
Q Consensus 381 ~~-Gv~~VGgcCgtgP~~i~~l~~~l~~~~~ 410 (591)
+. |+++|||||||+|+||++|++.++...+
T Consensus 287 ~~ggv~IIGGCCGTtPeHI~ala~~l~~~~p 317 (1178)
T TIGR02082 287 AEGGLNIVGGCCGTTPDHIRAIAEAVKNIKP 317 (1178)
T ss_pred HhCCCcEEEecCCCCHHHHHHHHHHhhcCCC
Confidence 87 6999999999999999999999987654
No 10
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=100.00 E-value=3.2e-55 Score=494.03 Aligned_cols=280 Identities=26% Similarity=0.423 Sum_probs=245.7
Q ss_pred CceEEEeccHHHHHHhccCCCCCCCCCcchhhhccCHHHHHHHHHHHHHHhcceeeccccccChhchhhhcCCChHHHHH
Q psy17603 2 ANVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQ 81 (591)
Q Consensus 2 ~~~lilDGg~gT~L~~~~g~~~~~~~lWs~~~l~~~Pe~v~~vH~~yl~AGAdiI~TnTy~as~~~l~~~~g~~~~~~~~ 81 (591)
++++||||||||+|+++ |++++ .+ .+.+++++||.|+++|++|++||||||+|||||+|+.+|+++ |+ .+++++
T Consensus 10 ~~~lilDGgmGT~L~~~-G~~~~-~~--~~~~~l~~Pe~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~~-g~-~~~~~~ 83 (612)
T PRK08645 10 ERVLIADGAMGTLLYSR-GVPLD-RC--FEELNLSHPELILRIHREYIEAGADVIQTNTFGANRIKLKRY-GL-EDKVKE 83 (612)
T ss_pred CCeEEEECHHHHHHHHc-CCCCC-CC--hHHhhccCHHHHHHHHHHHHHhCCCEEecCcccccHHHHHhc-Cc-hHHHHH
Confidence 45899999999999998 99875 34 388999999999999999999999999999999999999985 88 688999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCccccccccccCCCCCccCCCCcccCccchhhhhhhHhhhhccccCCCCcceeE
Q psy17603 82 LIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILI 161 (591)
Q Consensus 82 l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~va~~~gp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 161 (591)
++++||+|||+|++. +++|
T Consensus 84 l~~~av~lAr~a~~~-------------------------------------------------------------~~~V 102 (612)
T PRK08645 84 INRAAVRLAREAAGD-------------------------------------------------------------DVYV 102 (612)
T ss_pred HHHHHHHHHHHHhcC-------------------------------------------------------------CCeE
Confidence 999999999999742 2789
Q ss_pred eeccCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEE
Q psy17603 162 AGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFS 241 (591)
Q Consensus 162 agsiGP~ga~l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~ 241 (591)
+|||||||++ +.|. .++.++++++|++|++.|.++|||+|++||||++.|++++++++++..++|+|+||+
T Consensus 103 agsiGP~g~~--------~~~~-~~~~~~~~~~~~~~~~~l~~~gvD~l~~ET~~~~~Ea~a~~~a~~~~~~~p~~~Sf~ 173 (612)
T PRK08645 103 AGTIGPIGGR--------GPLG-DISLEEIRREFREQIDALLEEGVDGLLLETFYDLEELLLALEAAREKTDLPIIAQVA 173 (612)
T ss_pred EEeCCCCCCC--------CCCC-CCCHHHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 9999999984 3443 378999999999999999999999999999999999999999999866699999999
Q ss_pred ecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCC-chhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHH
Q psy17603 242 CKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVR-PLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQM 320 (591)
Q Consensus 242 ~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~-p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~ 320 (591)
+.+++++++|++++++++.+.. .++++||+||++ |+.+.++++.+...
T Consensus 174 ~~~~g~l~~G~~~~~~~~~~~~---~~~~avGiNC~~~p~~~~~~l~~l~~~---------------------------- 222 (612)
T PRK08645 174 FHEDGVTQNGTSLEEALKELVA---AGADVVGLNCGLGPYHMLEALERIPIP---------------------------- 222 (612)
T ss_pred ECCCCeeCCCCCHHHHHHHHHh---CCCCEEEecCCCCHHHHHHHHHHHHhc----------------------------
Confidence 9999999999999999999843 348999999995 99999999987532
Q ss_pred HHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCCCCHHHHHH
Q psy17603 321 LCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLH 400 (591)
Q Consensus 321 a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCgtgP~~i~~ 400 (591)
.++|+++|||+|.+... +++..+..+|+.|++++.+|.+.|+++|||||||+|+||++
T Consensus 223 ---------------------~~~pl~vypNaG~~~~~-~~~~~~~~~p~~~~~~~~~~~~~Ga~iiGGCCgt~P~hI~~ 280 (612)
T PRK08645 223 ---------------------ENAPLSAYPNAGLPEYV-DGRYVYSANPEYFAEYALEFVEQGVRLIGGCCGTTPEHIRA 280 (612)
T ss_pred ---------------------cCceEEEEECCCCCCCC-CCccccCCCHHHHHHHHHHHHHhCCCEEeEecCCCHHHHHH
Confidence 14799999999986322 23233456889999999999999999999999999999999
Q ss_pred HHHHhhhccc
Q psy17603 401 MKHRLDDWVS 410 (591)
Q Consensus 401 l~~~l~~~~~ 410 (591)
|++.++...+
T Consensus 281 la~~l~~~~~ 290 (612)
T PRK08645 281 MARALKGLKP 290 (612)
T ss_pred HHHHhccCCC
Confidence 9999976543
No 11
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-35 Score=295.58 Aligned_cols=265 Identities=21% Similarity=0.275 Sum_probs=192.6
Q ss_pred cceeEe-eccCCC----CCCCCCCCCCCCCc--CCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccCCHH----------
Q psy17603 157 RDILIA-GSVGPY----GASLRDGSEYRGDY--VEHVSEATMAEWHRPRIQALVEAGADILAIETIPASK---------- 219 (591)
Q Consensus 157 ~~~~Va-gsiGP~----ga~l~~g~eY~g~y--~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~---------- 219 (591)
.+++|+ |.+|-. |-...|..-|.|.. .....+|.+.+.|+ +|+++|+|+|.++||++..
T Consensus 14 ~rVLv~DGAmGT~lq~~~l~~~df~g~~g~nE~LnlT~Pd~I~~IH~----aY~eAGADiIeTNTFgat~i~lady~led 89 (311)
T COG0646 14 ERVLVLDGAMGTMLQSYGLDEADFRGLKGNNELLNLTKPDVIEAIHR----AYIEAGADIIETNTFGATTIKLADYGLED 89 (311)
T ss_pred cCEEEeechhhhhHHhcCCcHHhhccccCChHHHhcCCcHHHHHHHH----HHHhccCcEEEecCCCcchhhHhhhChHH
Confidence 458888 777763 22222211122322 12357899999998 7899999999999999852
Q ss_pred --------HHHHHHHHHHhcCC-CceEEEEEecCCCcccC--C---CCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHH
Q psy17603 220 --------EAQMLCRLLREWPH-QKAWLSFSCKDDKHISN--G---ESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSL 285 (591)
Q Consensus 220 --------Ea~aa~~a~~~~~~-~pv~vSf~~~~~g~l~~--G---~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~ 285 (591)
-++.|++++.++++ +|.||..+++|.+++.+ | .++.++.+.
T Consensus 90 ~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~~~~~~~~~v~fd~l~~a------------------------- 144 (311)
T COG0646 90 KVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKTLSISPDFAVTFDELVEA------------------------- 144 (311)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCceEEEEeccCcCCcCCcCCcccccHHHHHHH-------------------------
Confidence 13445555554432 69999999999887532 2 112222211
Q ss_pred HHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecC
Q psy17603 286 IEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWID 365 (591)
Q Consensus 286 l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~ 365 (591)
..+|+.+|.++|+|+|+|||++|++|+|+|+.++++..+. ...++|++++.+ ++. .|+++.
T Consensus 145 ------y~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~--------~~~~LPv~~s~T----i~~-sG~tl~ 205 (311)
T COG0646 145 ------YREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEE--------LGVRLPVMISGT----ITD-SGRTLS 205 (311)
T ss_pred ------HHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHh--------cCCcccEEEEEE----Eec-CceecC
Confidence 2457778899999999999999999999999999986422 123589998633 334 789999
Q ss_pred CCChHHHHHHHHHHHhcCCcEEeecCCCCHHHHHHHHHHhhhcccCccccccccccCCCCchhhhhhhCCcchhhcchhh
Q psy17603 366 RDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDF 445 (591)
Q Consensus 366 ~~~~~~~~~~~~~~~~~Gv~~VGgcCgtgP~~i~~l~~~l~~~~~~~~~~~pd~~~~~plws~~~~~~~P~~~~~~h~~~ 445 (591)
|.+++.+...+ ..+|+++||+||++||++|++.++.+...... ++ |+++|++.|+..
T Consensus 206 Gq~~~a~~~~l---~~~~~~~vGlNCa~Gp~~m~~~l~~ls~~~~~---~v----------s~~PNAGLP~~~------- 262 (311)
T COG0646 206 GQTIEAFLNSL---EHLGPDAVGLNCALGPDEMRPHLRELSRIADA---FV----------SVYPNAGLPNAF------- 262 (311)
T ss_pred CCcHHHHHHHh---hccCCcEEeeccccCHHHHHHHHHHHHhccCc---eE----------EEeCCCCCCccc-------
Confidence 98888777655 57899999999999999999999999876441 11 444466666632
Q ss_pred hhCCCCcccccccCCCCcccccCCcchhHHHHHHHHHcC-CcEEEeecCCcHHHHHHHHhccc
Q psy17603 446 IKGSQTNDFLRDYNSPNLWIDRDLCEPVDKYVTDWLDEG-VALVGGCCRTYAEDTLHMKHRLD 507 (591)
Q Consensus 446 i~aG~~v~~~~~y~~~~~~l~~~~~e~~a~~~~~~~~~G-~~~vgGCcgttp~~i~~l~~~~~ 507 (591)
..+..|..+ |++|+.++..|++.| ++||||||||||+||++|++.++
T Consensus 263 -------g~~~~Y~~~--------p~~~a~~~~~f~~~g~vnIvGGCCGTTPeHIraia~~v~ 310 (311)
T COG0646 263 -------GERAVYDLT--------PEYMAEALAEFAEEGGVNIVGGCCGTTPEHIRAIAEAVK 310 (311)
T ss_pred -------CCccccCCC--------HHHHHHHHHHHHHhCCceeeccccCCCHHHHHHHHHHhc
Confidence 124468764 566999999999888 99999999999999999999875
No 12
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=99.96 E-value=7.1e-29 Score=292.39 Aligned_cols=247 Identities=19% Similarity=0.243 Sum_probs=169.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEecccCCHH-------------H-----HHHHHHHHHhc----CCCceEEEEEec
Q psy17603 186 VSEATMAEWHRPRIQALVEAGADILAIETIPASK-------------E-----AQMLCRLLREW----PHQKAWLSFSCK 243 (591)
Q Consensus 186 ~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~-------------E-----a~aa~~a~~~~----~~~pv~vSf~~~ 243 (591)
..++.+++.|+ .|+++|+|+|.++||.... | ++.|.+++.++ ++.|++|..+++
T Consensus 62 t~Pe~I~~IH~----~Yl~AGADII~TNTF~a~~~~L~~ygl~~~~~eln~~av~LAreAa~~~~~~~~~~~~~VAGSIG 137 (1229)
T PRK09490 62 TQPDVIEAIHR----AYLEAGADIIETNTFNATTIAQADYGMESLVYELNFAAARLAREAADEWTAKTPDKPRFVAGVLG 137 (1229)
T ss_pred CCHHHHHHHHH----HHHHHhCceeecCCCCCCHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCceEEEEecC
Confidence 47899999999 6889999999999997642 1 22233333333 357899999999
Q ss_pred CCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHH
Q psy17603 244 DDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCR 323 (591)
Q Consensus 244 ~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~ 323 (591)
|.+++.+-.+ + ...+ +.+ + ...+.+.. .+.+|+.+|+++|||+|+||||+|+.|+++|+.
T Consensus 138 P~g~~~sl~p--~-------~e~p---g~~-~-it~del~~------~y~eQi~~L~e~GVDllliETi~d~~EakAal~ 197 (1229)
T PRK09490 138 PTNRTASISP--D-------VNDP---GFR-N-VTFDELVA------AYREQTRGLIEGGADLILIETIFDTLNAKAAIF 197 (1229)
T ss_pred CCCcccccCC--C-------cccc---ccc-C-CCHHHHHH------HHHHHHHHHHhCCCCEEEEeeeCCHHHHHHHHH
Confidence 9987643100 0 0000 011 0 11111111 124567788899999999999999999999999
Q ss_pred HHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCCCCHHHHHHHHH
Q psy17603 324 LLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKH 403 (591)
Q Consensus 324 ~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCgtgP~~i~~l~~ 403 (591)
++++.... ...++|++++.+ +...+|++..|++++.+...+ ...|+.+||+||++||++|.++++
T Consensus 198 a~~~~~~~--------~~~~lPv~vS~T----~~d~~Gr~lsG~~~ea~~~~l---~~~~~~avGlNCs~GP~~m~~~l~ 262 (1229)
T PRK09490 198 AVEEVFEE--------LGVRLPVMISGT----ITDASGRTLSGQTTEAFWNSL---RHAKPLSIGLNCALGADELRPYVE 262 (1229)
T ss_pred HHHHHHhh--------cCCCCeEEEEEE----EECCCCccCCCCcHHHHHHHH---hcCCCCEEEEcCCCcHHHHHHHHH
Confidence 99875100 011355555432 212257788888776665554 478999999999999999999999
Q ss_pred HhhhcccCccccccccccCCCCchhhhhhhCCcchhhcchhhhhCCCCcccccccCCCCcccccCCcchhHHHHHHHHHc
Q psy17603 404 RLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKGSQTNDFLRDYNSPNLWIDRDLCEPVDKYVTDWLDE 483 (591)
Q Consensus 404 ~l~~~~~~~~~~~pd~~~~~plws~~~~~~~P~~~~~~h~~~i~aG~~v~~~~~y~~~~~~l~~~~~e~~a~~~~~~~~~ 483 (591)
.+...+.. |+ |+++|++.|+ .. ..|.. +|++|++++++|++.
T Consensus 263 ~l~~~~~~------------pi-~vyPNAGlP~----------------~~-~~yd~--------tPe~~a~~~~~~~~~ 304 (1229)
T PRK09490 263 ELSRIADT------------YV-SAHPNAGLPN----------------AF-GEYDE--------TPEEMAAQIGEFAES 304 (1229)
T ss_pred HHHHhcCC------------eE-EEEeCCCCCC----------------CC-CCCCC--------CHHHHHHHHHHHHHc
Confidence 99766431 11 2223333333 11 24654 467799999999999
Q ss_pred C-CcEEEeecCCcHHHHHHHHhccccc
Q psy17603 484 G-VALVGGCCRTYAEDTLHMKHRLDDW 509 (591)
Q Consensus 484 G-~~~vgGCcgttp~~i~~l~~~~~~~ 509 (591)
| +++|||||||||+||++|++.++..
T Consensus 305 G~v~IIGGCCGTtPeHI~ala~~l~~~ 331 (1229)
T PRK09490 305 GFLNIVGGCCGTTPEHIAAIAEAVAGL 331 (1229)
T ss_pred CCCCEEEecCCCCHHHHHHHHHHHhcC
Confidence 9 9999999999999999999988655
No 13
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=99.95 E-value=2.7e-27 Score=246.29 Aligned_cols=229 Identities=24% Similarity=0.333 Sum_probs=155.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEecccCCH-----------HHH----HHHHHHHHhcC----CCceEEEEEecCCCc
Q psy17603 187 SEATMAEWHRPRIQALVEAGADILAIETIPAS-----------KEA----QMLCRLLREWP----HQKAWLSFSCKDDKH 247 (591)
Q Consensus 187 ~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~-----------~Ea----~aa~~a~~~~~----~~pv~vSf~~~~~g~ 247 (591)
.+|.+++.|+ .|+++|+|+|.++||... .++ +.+++.+++.. ..|++|..+++|.|.
T Consensus 44 ~Pe~V~~vH~----~yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~ 119 (304)
T PRK09485 44 NPELIYQVHL----DYFRAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSVGPYGA 119 (304)
T ss_pred ChHHHHHHHH----HHHHhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCccc
Confidence 6788899999 566889999999999643 121 33344444321 127999999998775
Q ss_pred ccC-C--------CCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHH
Q psy17603 248 ISN-G--------ESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEA 318 (591)
Q Consensus 248 l~~-G--------~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~ 318 (591)
... | .+.+++.+ .+.+|+.+|.++|||+|++|||++++|+
T Consensus 120 ~l~~~~~y~g~~~~~~~~~~~-------------------------------~~~~q~~~l~~~gvD~i~~ET~~~~~E~ 168 (304)
T PRK09485 120 YLADGSEYRGDYGLSEEELQD-------------------------------FHRPRIEALAEAGADLLACETIPNLDEA 168 (304)
T ss_pred ccCCCCCCCCCCCCCHHHHHH-------------------------------HHHHHHHHHhhCCCCEEEEeccCCHHHH
Confidence 432 1 11111111 1234556677899999999999999999
Q ss_pred HHHHHHHhhc-cccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhc-CCcEEeecCCCCHH
Q psy17603 319 QMLCRLLREW-PNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDE-GVALVGGCCRTYAE 396 (591)
Q Consensus 319 ~~a~~~~~~~-~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~-Gv~~VGgcCgtgP~ 396 (591)
+++++++++. +..|.|+||++.. +|++..|++.+++...+. +. ++++||+||+ +|+
T Consensus 169 ~~~~~~~~~~~~~~pv~is~~~~~------------------~g~l~~G~~~~~~~~~l~---~~~~~~~iGiNC~-~p~ 226 (304)
T PRK09485 169 EALVELLKEEFPGVPAWLSFTLRD------------------GTHISDGTPLAEAAALLA---ASPQVVAVGVNCT-APE 226 (304)
T ss_pred HHHHHHHHHhcCCCcEEEEEEeCC------------------CCcCCCCCCHHHHHHHHh---cCCCceEEEecCC-CHH
Confidence 9999999953 4556666666532 345566666666655543 44 5899999997 999
Q ss_pred HHHHHHHHhhhcccCccccccccccCCCCchhhhhhhCCcchhhcchhhhhCCCCcc-cccccCCCCcccccCCcchhHH
Q psy17603 397 DTLHMKHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKGSQTND-FLRDYNSPNLWIDRDLCEPVDK 475 (591)
Q Consensus 397 ~i~~l~~~l~~~~~~~~~~~pd~~~~~plws~~~~~~~P~~~~~~h~~~i~aG~~v~-~~~~y~~~~~~l~~~~~e~~a~ 475 (591)
+|.++++.+....+ .| +..+|| +|.... ....|. ....++.|++
T Consensus 227 ~~~~~l~~~~~~~~------------~p------l~~~PN-----------aG~~~~~~~~~~~------~~~~~~~~~~ 271 (304)
T PRK09485 227 LVTAAIAALRAVTD------------KP------LVVYPN-----------SGEVYDAVTKTWH------GPADDASLGE 271 (304)
T ss_pred HHHHHHHHHHhccC------------Cc------EEEECC-----------CCCCCCCCCCccc------CCCChHHHHH
Confidence 99999998865432 12 223333 332110 011111 1112346999
Q ss_pred HHHHHHHcCCcEEEeecCCcHHHHHHHHhccc
Q psy17603 476 YVTDWLDEGVALVGGCCRTYAEDTLHMKHRLD 507 (591)
Q Consensus 476 ~~~~~~~~G~~~vgGCcgttp~~i~~l~~~~~ 507 (591)
++++|++.|+++|||||||||+||++|++.++
T Consensus 272 ~~~~~~~~G~~iiGGCCGttP~hI~al~~~l~ 303 (304)
T PRK09485 272 LAPEWYAAGARLIGGCCRTTPEDIAALAAALK 303 (304)
T ss_pred HHHHHHHcCCeEEeeCCCCCHHHHHHHHHHhh
Confidence 99999999999999999999999999998764
No 14
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=99.95 E-value=2e-27 Score=281.05 Aligned_cols=246 Identities=19% Similarity=0.286 Sum_probs=169.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHH--------------HHHHHHHHH----hc---CCCceEEEEEecC
Q psy17603 186 VSEATMAEWHRPRIQALVEAGADILAIETIPASKE--------------AQMLCRLLR----EW---PHQKAWLSFSCKD 244 (591)
Q Consensus 186 ~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~E--------------a~aa~~a~~----~~---~~~pv~vSf~~~~ 244 (591)
..+|.+++.|+ .|+++|+|+|.++||..... .+.+++++| ++ ++.|++|..+++|
T Consensus 47 t~Pe~I~~IH~----~Yl~AGAdII~TNTF~a~~~~L~~yg~~~~~~eln~~av~lAr~Aa~~~~~~~~~~~~VAGsIGP 122 (1178)
T TIGR02082 47 TKPEVIATIHR----AYFEAGADIIETNTFNSTTISQADYDLEDLIYDLNFKGAKLARAVADEFTLTPEKPRFVAGSMGP 122 (1178)
T ss_pred CCHHHHHHHHH----HHHHHhchheecCCccCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEeCC
Confidence 47899999999 68899999999999976421 123333333 33 3468999999999
Q ss_pred CCcccC-CCCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHH
Q psy17603 245 DKHISN-GESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCR 323 (591)
Q Consensus 245 ~g~l~~-G~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~ 323 (591)
.|++.+ |.+.. .++ ++ + ... ..+.+ .+.+|+.+|.++|||+|+||||+|+.|+++|+.
T Consensus 123 ~g~~~~lgp~~~----------~~~---~~-~-~t~---del~~---~y~eq~~~L~~~GvD~iliETi~d~~EakAal~ 181 (1178)
T TIGR02082 123 TNKTATLSPDVE----------RPG---FR-N-VTY---DELVD---AYTEQAKGLLDGGVDLLLIETCFDTLNAKAALF 181 (1178)
T ss_pred CCCCccCCCccc----------cCc---cC-C-CCH---HHHHH---HHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHH
Confidence 987532 21000 000 00 0 000 11111 124567778889999999999999999999999
Q ss_pred HHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCCCCHHHHHHHHH
Q psy17603 324 LLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKH 403 (591)
Q Consensus 324 ~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCgtgP~~i~~l~~ 403 (591)
++++.... ...++|++++. ..+|. +|++..|++++.+...+ ...++++||+||++||++|.++++
T Consensus 182 a~~~~~~~--------~~~~lPv~vS~---~~~d~-~Gr~~~G~~~~~~~~~l---~~~~~~avGlNCs~gP~~m~~~l~ 246 (1178)
T TIGR02082 182 AAETVFEE--------KGRELPIMISG---TIVDT-SGRTLSGQTIEAFLTSL---EHAGIDMIGLNCALGPDEMRPHLK 246 (1178)
T ss_pred HHHHHHhh--------cCCCCeEEEEE---EEECC-CCeeCCCCcHHHHHHHH---hcCCCCEEEeCCCCCHHHHHHHHH
Confidence 99974110 01246777642 12332 67888888777777655 478999999999999999999999
Q ss_pred HhhhcccCccccccccccCCCCchhhhhhhCCcchhhcchhhhhCCCCcccccccCCCCcccccCCcchhHHHHHHHHHc
Q psy17603 404 RLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKGSQTNDFLRDYNSPNLWIDRDLCEPVDKYVTDWLDE 483 (591)
Q Consensus 404 ~l~~~~~~~~~~~pd~~~~~plws~~~~~~~P~~~~~~h~~~i~aG~~v~~~~~y~~~~~~l~~~~~e~~a~~~~~~~~~ 483 (591)
.|...++. | +..+|| ||.+... ..|.. ++++|++++++|++.
T Consensus 247 ~l~~~~~~------------p------i~vyPN-----------AGlP~~~-~~yd~--------~p~~~a~~~~~~~~~ 288 (1178)
T TIGR02082 247 HLSEHAEA------------Y------VSCHPN-----------AGLPNAF-GEYDL--------TPDELAKALADFAAE 288 (1178)
T ss_pred HHHHhcCc------------e------EEEEeC-----------CCCCCCC-CcccC--------CHHHHHHHHHHHHHh
Confidence 99776431 2 122233 3432221 14654 467799999999987
Q ss_pred -CCcEEEeecCCcHHHHHHHHhccccc
Q psy17603 484 -GVALVGGCCRTYAEDTLHMKHRLDDW 509 (591)
Q Consensus 484 -G~~~vgGCcgttp~~i~~l~~~~~~~ 509 (591)
|+++|||||||||+||++|++.++..
T Consensus 289 ggv~IIGGCCGTtPeHI~ala~~l~~~ 315 (1178)
T TIGR02082 289 GGLNIVGGCCGTTPDHIRAIAEAVKNI 315 (1178)
T ss_pred CCCcEEEecCCCCHHHHHHHHHHhhcC
Confidence 69999999999999999999998766
No 15
>PLN02489 homocysteine S-methyltransferase
Probab=99.95 E-value=4e-27 Score=247.47 Aligned_cols=240 Identities=25% Similarity=0.370 Sum_probs=157.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEecccCCH-----------HH--------HHHHHHHHHhc----------------
Q psy17603 187 SEATMAEWHRPRIQALVEAGADILAIETIPAS-----------KE--------AQMLCRLLREW---------------- 231 (591)
Q Consensus 187 ~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~-----------~E--------a~aa~~a~~~~---------------- 231 (591)
.+|.+++.|+ .|+++|+|+|.++||... +| ++.+.++..++
T Consensus 53 ~Pe~V~~vH~----~yl~AGAdvI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~ 128 (335)
T PLN02489 53 SPHLIRKVHL----DYLEAGADIIITASYQATIQGFESRGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGREL 128 (335)
T ss_pred CHHHHHHHHH----HHHHhCCCEEEecccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc
Confidence 6799999998 678899999999999753 22 12233333222
Q ss_pred CCCceEEEEEecCCCccc-CCCCHHHHHHHHHhhCCCCeEEEEecCCCch-hhHHHHHHHHhcCCceEEecCCCCcccee
Q psy17603 232 PHQKAWLSFSCKDDKHIS-NGESFTQVARTCYNMNPDQLIAVGVNCVRPL-MVSSLIEQLKTENIPLVVYPNSGEHILAI 309 (591)
Q Consensus 232 ~~~pv~vSf~~~~~g~l~-~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p~-~i~~~l~~l~~~~~~i~~l~~aG~D~l~i 309 (591)
.+.|++|..++++.|... +|.-. ... .+|+ ....+ .. .+.+|+.+|.++|||+|+|
T Consensus 129 ~~~~~~VaGsiGP~g~~l~~g~ey----------~g~---------y~~~~~~~e~-~~--~~~~qi~~l~~~gvD~i~~ 186 (335)
T PLN02489 129 SYRPILVAASIGSYGAYLADGSEY----------SGD---------YGPSVTLEKL-KD--FHRRRLQVLAEAGPDLIAF 186 (335)
T ss_pred CCCCcEEEEEcCCccccccCCccc----------CCC---------CccCCCHHHH-HH--HHHHHHHHHHhCCCCEEEE
Confidence 135799999999877543 22100 000 0010 00111 11 1234566677899999999
Q ss_pred ecccccHHHHHHHHHHhhcc-ccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEe
Q psy17603 310 ETIPASKEAQMLCRLLREWP-NQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVG 388 (591)
Q Consensus 310 ET~~d~~E~~~a~~~~~~~~-~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VG 388 (591)
|||++++|++++++++++.. +.|.|+||++.. ++++..|++..++...+.+ ..++++||
T Consensus 187 ET~~~l~E~~a~~~~~~~~~~~~p~~iS~t~~~------------------~~~l~~G~~~~~~~~~~~~--~~~~~~iG 246 (335)
T PLN02489 187 ETIPNKLEAQAYVELLEEENIKIPAWISFNSKD------------------GVNVVSGDSLLECASIADS--CKKVVAVG 246 (335)
T ss_pred eccCChHHHHHHHHHHHHcCCCCeEEEEEEeCC------------------CCccCCCCcHHHHHHHHHh--cCCceEEE
Confidence 99999999999999999864 467777776532 2334455555555544421 24789999
Q ss_pred ecCCCCHHHHHHHHHHhhhcccCccccccccccCCCCchhhhhhhCCcchhhcchhhhhCCCCcccccccCCCCccccc-
Q psy17603 389 GCCRTYAEDTLHMKHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKGSQTNDFLRDYNSPNLWIDR- 467 (591)
Q Consensus 389 gcCgtgP~~i~~l~~~l~~~~~~~~~~~pd~~~~~plws~~~~~~~P~~~~~~h~~~i~aG~~v~~~~~y~~~~~~l~~- 467 (591)
+||. +|++|..+++.++..... | ++.+|| +|...... ...|...
T Consensus 247 iNC~-~p~~~~~~l~~l~~~~~~------------p------l~vyPN-----------aG~~~~~~-----~~~~~~~~ 291 (335)
T PLN02489 247 INCT-PPRFIHGLILSIRKVTSK------------P------IVVYPN-----------SGETYDGE-----AKEWVEST 291 (335)
T ss_pred ecCC-CHHHHHHHHHHHHhhcCC------------c------EEEECC-----------CCCCCCCc-----cCcccCCC
Confidence 9995 999999999998765321 2 233333 33211000 0111101
Q ss_pred -CCcchhHHHHHHHHHcCCcEEEeecCCcHHHHHHHHhccc
Q psy17603 468 -DLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLD 507 (591)
Q Consensus 468 -~~~e~~a~~~~~~~~~G~~~vgGCcgttp~~i~~l~~~~~ 507 (591)
..+++|++++++|++.|+++|||||||+|+||++|++.++
T Consensus 292 ~~~~~~~~~~~~~~~~~Ga~iIGGCCgt~P~hI~al~~~l~ 332 (335)
T PLN02489 292 GVSDEDFVSYVNKWRDAGASLIGGCCRTTPNTIRAISKALS 332 (335)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEeeCCCCCHHHHHHHHHHHh
Confidence 1356799999999999999999999999999999999875
No 16
>PRK07534 methionine synthase I; Validated
Probab=99.95 E-value=4.2e-27 Score=246.98 Aligned_cols=233 Identities=20% Similarity=0.226 Sum_probs=157.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEecccCCHH----------HH----HHHHHHHHhc---CCCceEEEEEecCCCcc
Q psy17603 186 VSEATMAEWHRPRIQALVEAGADILAIETIPASK----------EA----QMLCRLLREW---PHQKAWLSFSCKDDKHI 248 (591)
Q Consensus 186 ~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~----------Ea----~aa~~a~~~~---~~~pv~vSf~~~~~g~l 248 (591)
..++.+++.|+ .|+++|+|+|.++||.... ++ +.+++.+++. .+.+++|..+++|-|..
T Consensus 42 ~~Pe~V~~vH~----~Yl~AGAdiI~TnTy~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~ 117 (336)
T PRK07534 42 DHPDNITALHQ----GFVDAGSDIILTNSFGGTAARLKLHDAQDRVHELNRAAAEIAREVADKAGRKVIVAGSVGPTGEI 117 (336)
T ss_pred cCHHHHHHHHH----HHHHhcCCEEEecCcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCCccc
Confidence 36799999998 6788999999999996541 11 2334444432 13578999999987654
Q ss_pred cC--CC-CHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHH
Q psy17603 249 SN--GE-SFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLL 325 (591)
Q Consensus 249 ~~--G~-~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~ 325 (591)
.. |. +.+++... +..|+..|.++|||+|++|||++++|++++++++
T Consensus 118 l~~~~~~~~~e~~~~-------------------------------~~~qi~~l~~~gvD~l~~ET~p~l~E~~a~~~~~ 166 (336)
T PRK07534 118 MEPMGALTHALAVEA-------------------------------FHEQAEGLKAGGADVLWVETISAPEEIRAAAEAA 166 (336)
T ss_pred cCCCCCCCHHHHHHH-------------------------------HHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHH
Confidence 32 21 22222211 1234555677899999999999999999999999
Q ss_pred hhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCCCCHHHHHHH-HHH
Q psy17603 326 REWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHM-KHR 404 (591)
Q Consensus 326 ~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCgtgP~~i~~l-~~~ 404 (591)
++. ..|.|+||++.. +|++..|++.+++.+.+.. ...++++||+||+.||++|... ++.
T Consensus 167 ~~~-~~Pv~vSft~~~------------------~g~l~~G~~~~~~~~~~~~-~~~~~~avGvNC~~gp~~~~~~l~~~ 226 (336)
T PRK07534 167 KLA-GMPWCGTMSFDT------------------AGRTMMGLTPADLADLVEK-LGEPPLAFGANCGVGASDLLRTVLGF 226 (336)
T ss_pred HHc-CCeEEEEEEECC------------------CCeeCCCCcHHHHHHHHHh-cCCCceEEEecCCCCHHHHHHHHHHH
Confidence 986 456677666532 3566667766666666643 1235599999999999999544 443
Q ss_pred hhhcccCccccccccccCCCCchhhhhhhCCcchhhcchhhhhCCCCc--ccccccCCCCcccccCCcchhHHHHHHHHH
Q psy17603 405 LDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKGSQTN--DFLRDYNSPNLWIDRDLCEPVDKYVTDWLD 482 (591)
Q Consensus 405 l~~~~~~~~~~~pd~~~~~plws~~~~~~~P~~~~~~h~~~i~aG~~v--~~~~~y~~~~~~l~~~~~e~~a~~~~~~~~ 482 (591)
+...+. .| +..+|| +|.++ ..+..|.. +++.|++++++|++
T Consensus 227 ~~~~~~------------~p------l~vyPN-----------aG~p~~~~~~~~~~~--------~p~~~~~~~~~~~~ 269 (336)
T PRK07534 227 TAQGPE------------RP------IIAKGN-----------AGIPKYVDGHIHYDG--------TPELMAEYAVLARD 269 (336)
T ss_pred HHhcCC------------Ce------EEEEcC-----------CCCcccCCCccccCC--------CHHHHHHHHHHHHH
Confidence 332211 12 222333 23211 11223543 34569999999999
Q ss_pred cCCcEEEeecCCcHHHHHHHHhcccccC
Q psy17603 483 EGVALVGGCCRTYAEDTLHMKHRLDDWD 510 (591)
Q Consensus 483 ~G~~~vgGCcgttp~~i~~l~~~~~~~d 510 (591)
.|+++|||||||||+||++|++.++...
T Consensus 270 ~Ga~iIGGCCGTtP~hI~~la~~l~~~~ 297 (336)
T PRK07534 270 AGARIIGGCCGTMPEHLAAMRAALDARP 297 (336)
T ss_pred cCCcEEeeecCCCHHHHHHHHHHHccCC
Confidence 9999999999999999999999987553
No 17
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=99.93 E-value=4e-25 Score=249.89 Aligned_cols=231 Identities=21% Similarity=0.234 Sum_probs=163.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHH--------------HHHHHHHHHhcCCCceEEEEEecCCCcc-cC
Q psy17603 186 VSEATMAEWHRPRIQALVEAGADILAIETIPASKE--------------AQMLCRLLREWPHQKAWLSFSCKDDKHI-SN 250 (591)
Q Consensus 186 ~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~E--------------a~aa~~a~~~~~~~pv~vSf~~~~~g~l-~~ 250 (591)
..++.+++.|+ .|+++|+|+|.++||....+ .+.+++.+++..+.+++|..+++|.|.. ..
T Consensus 40 ~~Pe~i~~vH~----~yl~AGAdvi~TnTy~as~~~l~~~g~~~~~~~l~~~av~lAr~a~~~~~~VagsiGP~g~~~~~ 115 (612)
T PRK08645 40 SHPELILRIHR----EYIEAGADVIQTNTFGANRIKLKRYGLEDKVKEINRAAVRLAREAAGDDVYVAGTIGPIGGRGPL 115 (612)
T ss_pred cCHHHHHHHHH----HHHHhCCCEEecCcccccHHHHHhcCchHHHHHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCCCC
Confidence 46799999998 57889999999999965421 2445666665444678999999887654 01
Q ss_pred C-CCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhcc
Q psy17603 251 G-ESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWP 329 (591)
Q Consensus 251 G-~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~ 329 (591)
| .+.+++.+. +.+|+..|.++|||+|++|||++++|++++++++++.+
T Consensus 116 ~~~~~~~~~~~-------------------------------~~~~~~~l~~~gvD~l~~ET~~~~~Ea~a~~~a~~~~~ 164 (612)
T PRK08645 116 GDISLEEIRRE-------------------------------FREQIDALLEEGVDGLLLETFYDLEELLLALEAAREKT 164 (612)
T ss_pred CCCCHHHHHHH-------------------------------HHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHHHHhC
Confidence 1 122222111 12345566789999999999999999999999999876
Q ss_pred ccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCCCCHHHHHHHHHHhhhcc
Q psy17603 330 NQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWV 409 (591)
Q Consensus 330 ~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCgtgP~~i~~l~~~l~~~~ 409 (591)
+.|.|+||++.. +|++..|++.+++...+ .+.|+++||+||+.+|++|.++++.+...+
T Consensus 165 ~~p~~~Sf~~~~------------------~g~l~~G~~~~~~~~~~---~~~~~~avGiNC~~~p~~~~~~l~~l~~~~ 223 (612)
T PRK08645 165 DLPIIAQVAFHE------------------DGVTQNGTSLEEALKEL---VAAGADVVGLNCGLGPYHMLEALERIPIPE 223 (612)
T ss_pred CCcEEEEEEECC------------------CCeeCCCCCHHHHHHHH---HhCCCCEEEecCCCCHHHHHHHHHHHHhcc
Confidence 567788877642 34455565555555444 468899999999989999999999886532
Q ss_pred cCccccccccccCCCCchhhhhhhCCcchhhcchhhhhCCCCc--ccccccCCCCcccccCCcchhHHHHHHHHHcCCcE
Q psy17603 410 SGLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKGSQTN--DFLRDYNSPNLWIDRDLCEPVDKYVTDWLDEGVAL 487 (591)
Q Consensus 410 ~~~~~~~pd~~~~~plws~~~~~~~P~~~~~~h~~~i~aG~~v--~~~~~y~~~~~~l~~~~~e~~a~~~~~~~~~G~~~ 487 (591)
. .| +..+|| +|... ..+..|.. +++.|++++++|++.|+++
T Consensus 224 ~------------~p------l~vypN-----------aG~~~~~~~~~~~~~--------~p~~~~~~~~~~~~~Ga~i 266 (612)
T PRK08645 224 N------------AP------LSAYPN-----------AGLPEYVDGRYVYSA--------NPEYFAEYALEFVEQGVRL 266 (612)
T ss_pred C------------ce------EEEEEC-----------CCCCCCCCCccccCC--------CHHHHHHHHHHHHHhCCCE
Confidence 2 12 122333 23211 11123432 4567999999999999999
Q ss_pred EEeecCCcHHHHHHHHhccccc
Q psy17603 488 VGGCCRTYAEDTLHMKHRLDDW 509 (591)
Q Consensus 488 vgGCcgttp~~i~~l~~~~~~~ 509 (591)
|||||||||+||++|++.++..
T Consensus 267 iGGCCgt~P~hI~~la~~l~~~ 288 (612)
T PRK08645 267 IGGCCGTTPEHIRAMARALKGL 288 (612)
T ss_pred EeEecCCCHHHHHHHHHHhccC
Confidence 9999999999999999988644
No 18
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=99.93 E-value=4.7e-26 Score=237.52 Aligned_cols=241 Identities=24% Similarity=0.373 Sum_probs=138.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHH---------------HHHHHHHHHhc-----CCCceEEEEEecCCC
Q psy17603 187 SEATMAEWHRPRIQALVEAGADILAIETIPASKE---------------AQMLCRLLREW-----PHQKAWLSFSCKDDK 246 (591)
Q Consensus 187 ~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~E---------------a~aa~~a~~~~-----~~~pv~vSf~~~~~g 246 (591)
.++.+++.|+ .|+++|+|+|.++||....+ .+.+++.+++. .+.+++|..+++|-|
T Consensus 39 ~p~~v~~iH~----~yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~VaGsiGP~g 114 (305)
T PF02574_consen 39 NPELVRQIHR----DYLEAGADIITTNTYQASRERLKEYGLSDEEAEELNRAAVELAREAADEYGSGRKVLVAGSIGPYG 114 (305)
T ss_dssp -HHHHHHHHH----HHHHHT-SEEEEC-TT-SHHHHGGGT-GGGCHHHHHHHHHHHHHHHHTT---TT-SEEEEEEE--S
T ss_pred CHHHHHHHHH----HHHHCCCCeEEecCCcCchhhhhhcCCcHHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccccc
Confidence 6899999999 57789999999999997532 13344444432 234799999999876
Q ss_pred cccCCCCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHH-hcCCceEEecCCCCccceeecccccHHHHHHHHHH
Q psy17603 247 HISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLK-TENIPLVVYPNSGEHILAIETIPASKEAQMLCRLL 325 (591)
Q Consensus 247 ~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~-~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~ 325 (591)
....|... .+.. +.. .+.+. .+..|+.+|.++|+|+|++|||+++.|++++++++
T Consensus 115 a~l~g~~y----------~~~~----------~~~----~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~ 170 (305)
T PF02574_consen 115 AYLSGSEY----------PGDY----------GLS----FEELRDFHREQAEALADAGVDLLLFETMPSLAEAKAALEAI 170 (305)
T ss_dssp ------------------CTTC----------TT-----HHHHHHHHHHHHHHHHHTT-SEEEEEEEC-CSCHHHHHHHH
T ss_pred ccchhhhc----------cccc----------ccc----HHHHHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHH
Confidence 43222110 0000 000 11111 12345666778899999999999999999999999
Q ss_pred hhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCCh----HHHHHHHHHHHhcCCcEEeecCCCCHHHHHHH
Q psy17603 326 REWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLC----EPVDKYVTDWLDEGVALVGGCCRTYAEDTLHM 401 (591)
Q Consensus 326 ~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~----~~~~~~~~~~~~~Gv~~VGgcCgtgP~~i~~l 401 (591)
++....|.|+||++... +++..|++. ..+.+....+ ..++.+||+||+.+|..+..+
T Consensus 171 ~~~~~~p~~is~~~~~~------------------~~l~~g~~~~~~~~~~~~~~~~~-~~~~~~iGvNC~~~~~~~~~l 231 (305)
T PF02574_consen 171 KEVTGLPVWISFSCKDS------------------GRLRDGTSLEDAVQVIDELLRAL-PPGPDAIGVNCTSPPEIMKAL 231 (305)
T ss_dssp HHHHHCCSSEEE-EEEE------------------ES-TCTTBCTTSHHHHHHHHHHH-CTT-SEEEEESSS-HHHHHHH
T ss_pred Hhhhhhhceeccchhhh------------------ccccCCCCHHHHHHHHHHHHHHh-hhhhheEEcCCCCcHHHHhHH
Confidence 99767788998887532 111122222 2333333333 579999999999988888888
Q ss_pred HHHhhhcccCccccccccccCCCCchhhhhhhCCcchhhcchhhhhCCCCcccccccCCCCcccccCCcchhHHHHHHHH
Q psy17603 402 KHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKGSQTNDFLRDYNSPNLWIDRDLCEPVDKYVTDWL 481 (591)
Q Consensus 402 ~~~l~~~~~~~~~~~pd~~~~~plws~~~~~~~P~~~~~~h~~~i~aG~~v~~~~~y~~~~~~l~~~~~e~~a~~~~~~~ 481 (591)
.+.+..... .| +..+|| +|........|..++..+. ++|++++++|+
T Consensus 232 ~~~~~~~~~------------~~------l~vyPN-----------sG~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 278 (305)
T PF02574_consen 232 LELMSATHD------------IP------LIVYPN-----------SGEPYDVGKVWSETPEDFA----PEWAEFVKEWV 278 (305)
T ss_dssp HHHHHHHT-------------SE------EEEE-------------SBS-TTSSGGSTTTTTSHG----GG-HHHHHHHH
T ss_pred HHHHhccCC------------ce------EEEecC-----------CCCCcccccccccchhhhH----HHHHHHHHHHH
Confidence 876655321 11 223333 3321111134554433321 12677999999
Q ss_pred HcCCcEEEeecCCcHHHHHHHHhccc
Q psy17603 482 DEGVALVGGCCRTYAEDTLHMKHRLD 507 (591)
Q Consensus 482 ~~G~~~vgGCcgttp~~i~~l~~~~~ 507 (591)
+.|+++|||||||+|+||++|++.++
T Consensus 279 ~~G~~iiGGCCGt~P~hI~al~~~l~ 304 (305)
T PF02574_consen 279 EAGARIIGGCCGTTPEHIRALAKALD 304 (305)
T ss_dssp HHHHCEE---TT--HHHHHHHHHHTH
T ss_pred HhCCEEEEeCCCCCHHHHHHHHHHhc
Confidence 99999999999999999999999875
No 19
>KOG1579|consensus
Probab=99.89 E-value=9.1e-23 Score=205.92 Aligned_cols=239 Identities=26% Similarity=0.415 Sum_probs=156.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHH------------------HHHHHHHHHhcCCCce-EEEEEecCCCc
Q psy17603 187 SEATMAEWHRPRIQALVEAGADILAIETIPASKE------------------AQMLCRLLREWPHQKA-WLSFSCKDDKH 247 (591)
Q Consensus 187 ~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~E------------------a~aa~~a~~~~~~~pv-~vSf~~~~~g~ 247 (591)
.++.+++.|+ .|+++|+|+|.+.|+..... ++.+ ..+|+.-..+. +|..++++.+.
T Consensus 51 ~Pe~V~~~H~----efL~aGadIi~T~Tyqas~~~~~~~~~~~~~~el~~~s~~~a-~~Are~~~~~~~~v~gsiGp~~A 125 (317)
T KOG1579|consen 51 NPEAVEQVHK----EFLRAGADIISTNTYQASSDGFEEYVEEEELIELYEKSVELA-DLARERLGEETGYVAGSIGPYGA 125 (317)
T ss_pred ChHHHHHHHH----HHHHccCcEEEEeeeeecchHHhhhhhhHHHHHHHHHHHHHH-HHHHHHhccccceeeeecccccc
Confidence 4799999998 57899999999999986421 1122 22222112222 77788877665
Q ss_pred c-cCCCCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHh-cCCceEEecCCCCccceeecccccHHHHHHHHHH
Q psy17603 248 I-SNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKT-ENIPLVVYPNSGEHILAIETIPASKEAQMLCRLL 325 (591)
Q Consensus 248 l-~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~-~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~ 325 (591)
+ .+|...+-. + ..+ ++ .+.+.+ +..|+.++.++|+|+|+|||+|+..|++++++..
T Consensus 126 ~l~~g~eytg~----Y---~~~----------~~-----~~el~~~~k~qle~~~~~gvD~L~fETip~~~EA~a~l~~l 183 (317)
T KOG1579|consen 126 TLADGSEYTGI----Y---GDN----------VE-----FEELYDFFKQQLEVFLEAGVDLLAFETIPNVAEAKAALELL 183 (317)
T ss_pred eecCCcccccc----c---ccc----------cC-----HHHHHHHHHHHHHHHHhCCCCEEEEeecCCHHHHHHHHHHH
Confidence 4 334321100 0 000 11 222222 2457788889999999999999999999999999
Q ss_pred hhc-cccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcC--CcEEeecCCCCHHHHHHHH
Q psy17603 326 REW-PNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEG--VALVGGCCRTYAEDTLHMK 402 (591)
Q Consensus 326 ~~~-~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~G--v~~VGgcCgtgP~~i~~l~ 402 (591)
++. ++.|.|+||++.+ .|++..|++.+.++..+ ..| +..||+||.. |..+..+.
T Consensus 184 ~~~~~~~p~~is~t~~d------------------~g~l~~G~t~e~~~~~~----~~~~~~~~IGvNC~~-~~~~~~~~ 240 (317)
T KOG1579|consen 184 QELGPSKPFWISFTIKD------------------EGRLRSGETGEEAAQLL----KDGINLLGIGVNCVS-PNFVEPLL 240 (317)
T ss_pred HhcCCCCcEEEEEEecC------------------CCcccCCCcHHHHHHHh----ccCCceEEEEeccCC-chhccHHH
Confidence 997 7888999998764 23444555556666533 556 8899999965 55555555
Q ss_pred HHhhhcccCccccccccccCCCCchhhhhhhCCcchhhcchhhhhCCCCcccccccCCC-CcccccC-CcchhHHHHHHH
Q psy17603 403 HRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKGSQTNDFLRDYNSP-NLWIDRD-LCEPVDKYVTDW 480 (591)
Q Consensus 403 ~~l~~~~~~~~~~~pd~~~~~plws~~~~~~~P~~~~~~h~~~i~aG~~v~~~~~y~~~-~~~l~~~-~~e~~a~~~~~~ 480 (591)
..|... .. -..++.+|| +| .+|... ..|.... ..+++..++++|
T Consensus 241 ~~L~~~--~~---------------~~~llvYPN-----------sG------e~yd~~~g~~~~~~~~~~~~~~~~~~~ 286 (317)
T KOG1579|consen 241 KELMAK--LT---------------KIPLLVYPN-----------SG------EVYDNEKGGWIPTPFGLEPWQTYVKKA 286 (317)
T ss_pred HHHhhc--cC---------------CCeEEEecC-----------CC------CCCccccCcccCCCcccchHHHHHHHH
Confidence 555411 11 112445555 33 133333 2233321 456688999999
Q ss_pred HHcCCcEEEeecCCcHHHHHHHHhccccc
Q psy17603 481 LDEGVALVGGCCRTYAEDTLHMKHRLDDW 509 (591)
Q Consensus 481 ~~~G~~~vgGCcgttp~~i~~l~~~~~~~ 509 (591)
.+.||++|||||+|+|.||++|+++++.+
T Consensus 287 ~~lGv~iIGGCCrt~P~~I~aI~e~v~~~ 315 (317)
T KOG1579|consen 287 IDLGVRIIGGCCRTTPKHIRAIAEAVKKY 315 (317)
T ss_pred HhcccceeCcccCCChHHHHHHHHHhhcc
Confidence 99999999999999999999999998754
No 20
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=99.89 E-value=1.5e-23 Score=208.45 Aligned_cols=152 Identities=26% Similarity=0.457 Sum_probs=125.0
Q ss_pred CCCchhhhhhhCCcchhhcchhhhhCCCCcccccccCCCCcccccCCcc-----------hhHHHHHHHHHcCCcEEEee
Q psy17603 423 HPLWSSYFLATAKDAVVQTHRDFIKGSQTNDFLRDYNSPNLWIDRDLCE-----------PVDKYVTDWLDEGVALVGGC 491 (591)
Q Consensus 423 ~plws~~~~~~~P~~~~~~h~~~i~aG~~v~~~~~y~~~~~~l~~~~~e-----------~~a~~~~~~~~~G~~~vgGC 491 (591)
.|+||+.++...|++|.++|.+|+++|++++.++||++++....++..+ ++++++++.+-.+...|.||
T Consensus 30 ~plWSa~~l~~~peiv~~vh~df~~aGa~ii~T~TYqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g~~~~~iags 109 (300)
T COG2040 30 DPLWSALALVDEPEIVRNVHADFLRAGADIITTATYQATPEGFAERVSEDEAKQLIRRSVELARAARDAYGEENQNIAGS 109 (300)
T ss_pred chhhhhhhcccCHHHHHHHHHHHHHhcCcEEeehhhhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhccccccccee
Confidence 4899999999999999999999999999999999999998776666543 25788888555556778999
Q ss_pred cCCcHHHHH-----------------------H----------------------HHhcc-----ccc------CCCCCC
Q psy17603 492 CRTYAEDTL-----------------------H----------------------MKHRL-----DDW------DDKHIS 515 (591)
Q Consensus 492 cgttp~~i~-----------------------~----------------------l~~~~-----~~~------d~~~l~ 515 (591)
+||..+++. . +.+.+ ..| |++.||
T Consensus 110 iGP~ga~~a~Ey~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~Ea~Aiv~l~~~~s~p~wISfT~~d~~~lr 189 (300)
T COG2040 110 LGPYGAALADEYRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNITEAEAIVQLVQEFSKPAWISFTLNDDTRLR 189 (300)
T ss_pred ccchhhhcChhhcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCChHHHHHHHHHHHHhCCceEEEEEeCCCCccC
Confidence 998754222 1 11111 111 689999
Q ss_pred CCCcHHHHHHHhhhcCCCCeeEEEEcCCChhhHHHHHHHhhh--cCCcEEEecCCCCcCCCcc
Q psy17603 516 NGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQLKT--ENIPLVVYPNSGERYDFHL 576 (591)
Q Consensus 516 dG~~l~~~~~~~~~~~~~~~~avGiNC~~p~~v~~~i~~l~~--~~~pl~vYPNsG~~yd~~~ 576 (591)
|||++++++..++ ..+++.++||||+.|+++..+++.++. .++|++|||||||.||+..
T Consensus 190 ~Gt~l~eaa~~~~--~~~~iaa~gvNC~~p~~~~a~i~~l~~~~~~~piivYPNSGe~~d~~~ 250 (300)
T COG2040 190 DGTPLSEAAAILA--GLPNIAALGVNCCHPDHIPAAIEELSKLLTGKPIIVYPNSGEQYDPAG 250 (300)
T ss_pred CCccHHHHHHHHh--cCcchhheeeccCChhhhHHHHHHHHhcCCCCceEEcCCcccccCcCC
Confidence 9999999999987 456899999999999999999999944 6899999999999999996
No 21
>PRK15063 isocitrate lyase; Provisional
Probab=95.10 E-value=0.57 Score=50.89 Aligned_cols=80 Identities=16% Similarity=0.218 Sum_probs=56.0
Q ss_pred hHHHHHHHHhcCCceEEecCCCCccceeec-ccccHHHHHHHHHHhhccccccccccccCCCCcc--eEEecCCCcceec
Q psy17603 282 VSSLIEQLKTENIPLVVYPNSGEHILAIET-IPASKEAQMLCRLLREWPNQKAWLSFSCKTENIP--LVVYPNSGERYDA 358 (591)
Q Consensus 282 i~~~l~~l~~~~~~i~~l~~aG~D~l~iET-~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~p--l~~~pn~g~~~d~ 358 (591)
+...|+... +|.+ |+|++++|| .+|++|++...+.++.. .| +++|.. ...|
T Consensus 264 ld~AI~Ra~-------AYa~-GAD~iw~Et~~~d~ee~~~fa~~v~~~---------------~P~~~layn~-sPsf-- 317 (428)
T PRK15063 264 IEQAIARGL-------AYAP-YADLIWCETSTPDLEEARRFAEAIHAK---------------FPGKLLAYNC-SPSF-- 317 (428)
T ss_pred HHHHHHHHH-------HHhc-CCCEEEeCCCCCCHHHHHHHHHhhccc---------------CccceeecCC-CCCc--
Confidence 445555543 3456 999999999 89999999988887642 24 566632 2333
Q ss_pred cCCeecCCCChHHHHHHHHHHHhcCCcEEeec
Q psy17603 359 VNARWIDRDLCEPVDKYVTDWLDEGVALVGGC 390 (591)
Q Consensus 359 ~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgc 390 (591)
.|....+++.++.+.+++.++|..++=..
T Consensus 318 ---nW~~~~~~~~~~~f~~eL~~~Gy~~~~~~ 346 (428)
T PRK15063 318 ---NWKKNLDDATIAKFQRELGAMGYKFQFIT 346 (428)
T ss_pred ---ccccccCHHHHHHHHHHHHHcCceEEEec
Confidence 25445677899999999999997665543
No 22
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=92.56 E-value=2.1 Score=43.48 Aligned_cols=37 Identities=19% Similarity=0.365 Sum_probs=28.2
Q ss_pred ecCCCCccceeecccccHHHHHHHHHHhhccccccccccccCCCCcceEEecCC
Q psy17603 299 YPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNS 352 (591)
Q Consensus 299 l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~ 352 (591)
+.++|+|.+++++..+.++++...+.. +.|+++++..
T Consensus 169 y~~AGAD~v~v~~~~~~~~~~~~~~~~-----------------~~Pl~~~~~~ 205 (243)
T cd00377 169 YAEAGADGIFVEGLKDPEEIRAFAEAP-----------------DVPLNVNMTP 205 (243)
T ss_pred HHHcCCCEEEeCCCCCHHHHHHHHhcC-----------------CCCEEEEecC
Confidence 346899999999999888888765541 4788887554
No 23
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=90.86 E-value=5.6 Score=40.33 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=33.0
Q ss_pred HHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEE
Q psy17603 195 HRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSF 240 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf 240 (591)
--+|.+++.++|+|.+++++..+.++++.+.+. .+.|+.+..
T Consensus 162 ai~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~----~~~Pl~~~~ 203 (243)
T cd00377 162 AIERAKAYAEAGADGIFVEGLKDPEEIRAFAEA----PDVPLNVNM 203 (243)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhc----CCCCEEEEe
Confidence 346788999999999999998888887766554 467877664
No 24
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=90.17 E-value=15 Score=34.89 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=33.5
Q ss_pred CcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCC-----CCHHHHHHHHHHh
Q psy17603 343 NIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCR-----TYAEDTLHMKHRL 405 (591)
Q Consensus 343 ~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCg-----tgP~~i~~l~~~l 405 (591)
++|+++|...+. + .+++.+.+.++.+.+.|++.|-...+ .+.++++.+++..
T Consensus 113 ~~pv~iy~~p~~--------~---~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~ 169 (201)
T cd00945 113 GLPLKVILETRG--------L---KTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAV 169 (201)
T ss_pred CceEEEEEECCC--------C---CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhc
Confidence 578888755321 1 23456666655556789999987776 3667777776644
No 25
>PRK06852 aldolase; Validated
Probab=90.13 E-value=18 Score=38.04 Aligned_cols=145 Identities=12% Similarity=0.039 Sum_probs=78.7
Q ss_pred HHHHHHcCCCEEEecccCCHHHHHHHHHHH-HhcCCCceEEEEEecCCCc--------ccCCCCHHHHHHHHHhhCCCCe
Q psy17603 199 IQALVEAGADILAIETIPASKEAQMLCRLL-REWPHQKAWLSFSCKDDKH--------ISNGESFTQVARTCYNMNPDQL 269 (591)
Q Consensus 199 i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~-~~~~~~pv~vSf~~~~~g~--------l~~G~~~~~~~~~~~~~~~~~~ 269 (591)
++...++|+|.|+.- +.+++.. ..+.+.|+++-++-...-. ..--.+++++++.= .....++
T Consensus 65 i~~~~~~g~dav~~~--------~G~l~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG-~~~~~~A 135 (304)
T PRK06852 65 FRIASKAKIGVFATQ--------LGLIARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFK-ENSGLNI 135 (304)
T ss_pred HHHHHhcCCCEEEeC--------HHHHHhhccccCCCcEEEEECCCCCcCCcccCCccccceecHHHHHhcC-CccCCCc
Confidence 445678899999865 2232222 2345788887765321100 00112355554421 0012347
Q ss_pred EEEEecC-CCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhccccccccccccCCCCcceE-
Q psy17603 270 IAVGVNC-VRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLV- 347 (591)
Q Consensus 270 ~aiGvNC-~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~- 347 (591)
+||++.. .+.+.-...++.+. .+.+.|.++ .+|++
T Consensus 136 dAV~v~v~~Gs~~E~~ml~~l~-----------------------------~v~~ea~~~--------------GlPll~ 172 (304)
T PRK06852 136 LGVGYTIYLGSEYESEMLSEAA-----------------------------QIIYEAHKH--------------GLIAVL 172 (304)
T ss_pred eEEEEEEecCCHHHHHHHHHHH-----------------------------HHHHHHHHh--------------CCcEEE
Confidence 8888877 23332233333332 223344444 47866
Q ss_pred -EecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCC-----CCHHHHHHHHH
Q psy17603 348 -VYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCR-----TYAEDTLHMKH 403 (591)
Q Consensus 348 -~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCg-----tgP~~i~~l~~ 403 (591)
+||..... ....+|+.++-.++-..++|+++|=..-. ..++..+.+.+
T Consensus 173 ~~yprG~~i--------~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~ 226 (304)
T PRK06852 173 WIYPRGKAV--------KDEKDPHLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVL 226 (304)
T ss_pred EeeccCccc--------CCCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHH
Confidence 47664322 12234667777777677999999999975 45677777655
No 26
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=89.07 E-value=24 Score=35.15 Aligned_cols=165 Identities=15% Similarity=0.182 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEec-ccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhh
Q psy17603 186 VSEATMAEWHRPRIQALVEAGADILAIE-TIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNM 264 (591)
Q Consensus 186 ~~~e~l~~~h~~~i~~l~~aGvD~i~~E-T~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~ 264 (591)
.+.++..++.+ .|.++|+|.|-+- -+.+..+.+.+.++.+..+.. .+.++ +.. .-..+..+++.+..
T Consensus 11 ~~~~~k~~i~~----~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~~~-----~~~~i~~~~~~~~~- 78 (237)
T PF00682_consen 11 FSTEEKLEIAK----ALDEAGVDYIEVGFPFASEDDFEQVRRLREALPNA-RLQAL-CRA-----NEEDIERAVEAAKE- 78 (237)
T ss_dssp --HHHHHHHHH----HHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSS-EEEEE-EES-----CHHHHHHHHHHHHH-
T ss_pred cCHHHHHHHHH----HHHHhCCCEEEEcccccCHHHHHHhhhhhhhhccc-cccee-eee-----hHHHHHHHHHhhHh-
Confidence 56777777776 5778899998776 344455555555554443332 22222 221 11234444554432
Q ss_pred CCCCeEEEEecC-CCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhccccccccccccCCCC
Q psy17603 265 NPDQLIAVGVNC-VRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTEN 343 (591)
Q Consensus 265 ~~~~~~aiGvNC-~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~ 343 (591)
.+++.+.+-+ +++.++...+. ... -..+++++.+++.+|+.+
T Consensus 79 --~g~~~i~i~~~~s~~~~~~~~~---~~~------------------~~~~~~~~~~v~~ak~~g-------------- 121 (237)
T PF00682_consen 79 --AGIDIIRIFISVSDLHIRKNLN---KSR------------------EEALERIEEAVKYAKELG-------------- 121 (237)
T ss_dssp --TTSSEEEEEEETSHHHHHHHTC---SHH------------------HHHHHHHHHHHHHHHHTT--------------
T ss_pred --ccCCEEEecCcccHHHHHHhhc---CCH------------------HHHHHHHHHHHHHHHhcC--------------
Confidence 3444444443 33322222111 000 011344566667777653
Q ss_pred cceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCC---CCHHHHHHHHHHhhhccc
Q psy17603 344 IPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCR---TYAEDTLHMKHRLDDWVS 410 (591)
Q Consensus 344 ~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCg---tgP~~i~~l~~~l~~~~~ 410 (591)
..+.+.+... ...+++.+.++++.+.++|++.|.+|=. ..|..+..+++.+++..+
T Consensus 122 ~~v~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~ 180 (237)
T PF00682_consen 122 YEVAFGCEDA-----------SRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALP 180 (237)
T ss_dssp SEEEEEETTT-----------GGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHST
T ss_pred CceEeCcccc-----------ccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhcc
Confidence 1111111100 1235688999999999999999988733 369999999998887643
No 27
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=89.05 E-value=20 Score=36.92 Aligned_cols=172 Identities=9% Similarity=0.029 Sum_probs=100.7
Q ss_pred cceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEee----------------------cCCCCHHHHHHH
Q psy17603 344 IPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGG----------------------CCRTYAEDTLHM 401 (591)
Q Consensus 344 ~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGg----------------------cCgtgP~~i~~l 401 (591)
..++.|...|.+ +.+...+.++.+.+.||++|-+ .-|++.+++.++
T Consensus 15 ~ali~yi~aG~P------------~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~ 82 (263)
T CHL00200 15 CALIPFITAGDP------------DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSI 82 (263)
T ss_pred CcEEEEEeCCCC------------CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHH
Confidence 346777666643 1245666666677788888654 345566667677
Q ss_pred HHHhhhcccCccccccccccCCCCchhhhhhhCCcchhhc-----chhhhhCCCCcccccccCCCCcccccCCcchhHHH
Q psy17603 402 KHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQT-----HRDFIKGSQTNDFLRDYNSPNLWIDRDLCEPVDKY 476 (591)
Q Consensus 402 ~~~l~~~~~~~~~~~pd~~~~~plws~~~~~~~P~~~~~~-----h~~~i~aG~~v~~~~~y~~~~~~l~~~~~e~~a~~ 476 (591)
++++++... .|+ +++++-|.+.+- =.++.++|.+-. ..-.. -+|+-.++
T Consensus 83 ~~~~r~~~~------------~p~----vlm~Y~N~i~~~G~e~F~~~~~~aGvdgv--iipDL--------P~ee~~~~ 136 (263)
T CHL00200 83 LSEVNGEIK------------API----VIFTYYNPVLHYGINKFIKKISQAGVKGL--IIPDL--------PYEESDYL 136 (263)
T ss_pred HHHHhcCCC------------CCE----EEEecccHHHHhCHHHHHHHHHHcCCeEE--EecCC--------CHHHHHHH
Confidence 776654311 121 134444433321 123345664321 11111 12333444
Q ss_pred HHHHHHcCCcEEEeecCCcH-HHHHHHHhccccc---------CCCCCCCCCcHHHHHHHhhhcCCCCeeEEEEcCCChh
Q psy17603 477 VTDWLDEGVALVGGCCRTYA-EDTLHMKHRLDDW---------DDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPL 546 (591)
Q Consensus 477 ~~~~~~~G~~~vgGCcgttp-~~i~~l~~~~~~~---------d~~~l~dG~~l~~~~~~~~~~~~~~~~avGiNC~~p~ 546 (591)
...+.+.|...|-=+-+||| +.|+.+.+..++| .+......+.+.+.++.++. ....+.+||+..+.++
T Consensus 137 ~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~-~t~~Pi~vGFGI~~~e 215 (263)
T CHL00200 137 ISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKK-MTNKPIILGFGISTSE 215 (263)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHH-hcCCCEEEECCcCCHH
Confidence 44556789999999999885 5788888877766 12222223456677777664 2346899999999999
Q ss_pred hHHHHHHH
Q psy17603 547 MVSPLIEQ 554 (591)
Q Consensus 547 ~v~~~i~~ 554 (591)
++.++.+.
T Consensus 216 ~~~~~~~~ 223 (263)
T CHL00200 216 QIKQIKGW 223 (263)
T ss_pred HHHHHHhc
Confidence 99997654
No 28
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=88.27 E-value=22 Score=36.30 Aligned_cols=171 Identities=9% Similarity=0.101 Sum_probs=101.3
Q ss_pred cceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEE--ee--------------------cCCCCHHHHHHH
Q psy17603 344 IPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALV--GG--------------------CCRTYAEDTLHM 401 (591)
Q Consensus 344 ~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~V--Gg--------------------cCgtgP~~i~~l 401 (591)
..++.|...|.+ +.+...+.++.+.+.||++| |. --|++.+.+.++
T Consensus 10 ~~li~y~~aG~P------------~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~ 77 (256)
T TIGR00262 10 GAFIPFVTAGDP------------TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFEL 77 (256)
T ss_pred ceEEEEEeCCCC------------CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHH
Confidence 347777777743 23456677777788899985 44 667888888888
Q ss_pred HHHhhhc-ccCccccccccccCCCCchhhhhhhCC------cchhhcchhhhhCCCCcccccccCCCCcccccCCcchhH
Q psy17603 402 KHRLDDW-VSGLSTYVGDIIDGHPLWSSYFLATAK------DAVVQTHRDFIKGSQTNDFLRDYNSPNLWIDRDLCEPVD 474 (591)
Q Consensus 402 ~~~l~~~-~~~~~~~~pd~~~~~plws~~~~~~~P------~~~~~~h~~~i~aG~~v~~~~~y~~~~~~l~~~~~e~~a 474 (591)
++.+++. ... |+ .+++-.+| +... .++.++|.+-.. .. +...++..
T Consensus 78 v~~ir~~~~~~------------pl--v~m~Y~Npi~~~G~e~f~---~~~~~aGvdgvi---ip-------Dlp~ee~~ 130 (256)
T TIGR00262 78 LKKVRQKHPNI------------PI--GLLTYYNLIFRKGVEEFY---AKCKEVGVDGVL---VA-------DLPLEESG 130 (256)
T ss_pred HHHHHhcCCCC------------CE--EEEEeccHHhhhhHHHHH---HHHHHcCCCEEE---EC-------CCChHHHH
Confidence 8888754 221 11 01112222 1111 344567754321 11 11123344
Q ss_pred HHHHHHHHcCCcEEEeecCCcH-HHHHHHHhccccc-----CCCCC----CCCCcHHHHHHHhhhcCCCCeeEEEEcCCC
Q psy17603 475 KYVTDWLDEGVALVGGCCRTYA-EDTLHMKHRLDDW-----DDKHI----SNGESFTQVARTCYNMNPDQLIAVGVNCVR 544 (591)
Q Consensus 475 ~~~~~~~~~G~~~vgGCcgttp-~~i~~l~~~~~~~-----d~~~l----~dG~~l~~~~~~~~~~~~~~~~avGiNC~~ 544 (591)
+....+.+.|...+-=|-++|| +.|+.+.+..+++ -.|.+ ....++.+.++.++.. ...+..+|+..+.
T Consensus 131 ~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~-~~~pi~vgfGI~~ 209 (256)
T TIGR00262 131 DLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAY-SAKPVLVGFGISK 209 (256)
T ss_pred HHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhh-cCCCEEEeCCCCC
Confidence 5555556789988877888774 6777887777755 01111 1223466666666632 2346889999999
Q ss_pred hhhHHHHHHH
Q psy17603 545 PLMVSPLIEQ 554 (591)
Q Consensus 545 p~~v~~~i~~ 554 (591)
++++.++++.
T Consensus 210 ~e~~~~~~~~ 219 (256)
T TIGR00262 210 PEQVKQAIDA 219 (256)
T ss_pred HHHHHHHHHc
Confidence 9999998654
No 29
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=88.17 E-value=19 Score=37.46 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=22.9
Q ss_pred ecCCCCccceeec-ccccHHHHHHHHHHh
Q psy17603 299 YPNSGEHILAIET-IPASKEAQMLCRLLR 326 (591)
Q Consensus 299 l~~aG~D~l~iET-~~d~~E~~~a~~~~~ 326 (591)
+.++|+|.+.++. ..|.+|++...+.++
T Consensus 178 y~eAGAD~ifv~~~~~~~~ei~~~~~~~~ 206 (285)
T TIGR02320 178 YAEAGADGIMIHSRKKDPDEILEFARRFR 206 (285)
T ss_pred HHHcCCCEEEecCCCCCHHHHHHHHHHhh
Confidence 4568999999996 688899888887765
No 30
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=87.89 E-value=27 Score=36.24 Aligned_cols=77 Identities=9% Similarity=0.064 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcC-CCEEEec-ccC-----CHHHHHHHHHHHHhc-C-CCceEEEEEecCCCcccCCCCHH
Q psy17603 185 HVSEATMAEWHRPRIQALVEAG-ADILAIE-TIP-----ASKEAQMLCRLLREW-P-HQKAWLSFSCKDDKHISNGESFT 255 (591)
Q Consensus 185 ~~~~e~l~~~h~~~i~~l~~aG-vD~i~~E-T~~-----~~~Ea~aa~~a~~~~-~-~~pv~vSf~~~~~g~l~~G~~~~ 255 (591)
.++.+. .++.++.+++.| ||.|++. |.+ +.+|-+.+++.+.+. . ..|+++... +.+..
T Consensus 17 ~iD~~~----~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~---------~~~t~ 83 (290)
T TIGR00683 17 TINEKG----LRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG---------SVNLK 83 (290)
T ss_pred CcCHHH----HHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecC---------CCCHH
Confidence 355655 445566788899 9998655 322 356766666655532 2 357766552 23456
Q ss_pred HHHHHHHhhCCCCeEEEEe
Q psy17603 256 QVARTCYNMNPDQLIAVGV 274 (591)
Q Consensus 256 ~~~~~~~~~~~~~~~aiGv 274 (591)
++++........+++++.+
T Consensus 84 ~~i~la~~a~~~Gad~v~v 102 (290)
T TIGR00683 84 EAVELGKYATELGYDCLSA 102 (290)
T ss_pred HHHHHHHHHHHhCCCEEEE
Confidence 6666554333445555555
No 31
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=87.61 E-value=43 Score=35.72 Aligned_cols=43 Identities=14% Similarity=-0.061 Sum_probs=33.9
Q ss_pred CChHHHHHHHHHHHhcCCcEEeecCCC---CHHHHHHHHHHhhhcc
Q psy17603 367 DLCEPVDKYVTDWLDEGVALVGGCCRT---YAEDTLHMKHRLDDWV 409 (591)
Q Consensus 367 ~~~~~~~~~~~~~~~~Gv~~VGgcCgt---gP~~i~~l~~~l~~~~ 409 (591)
.+++.+.+.++.+.+.|++.|..+=.. .|+.+..+++.+++..
T Consensus 141 ~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l 186 (337)
T PRK08195 141 APPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAAL 186 (337)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 356788998988889999988766444 6899999988887653
No 32
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=86.91 E-value=26 Score=36.23 Aligned_cols=77 Identities=12% Similarity=0.040 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEec-ccC-----CHHHHHHHHHHHHhc-C-CCceEEEEEecCCCcccCCCCHHH
Q psy17603 185 HVSEATMAEWHRPRIQALVEAGADILAIE-TIP-----ASKEAQMLCRLLREW-P-HQKAWLSFSCKDDKHISNGESFTQ 256 (591)
Q Consensus 185 ~~~~e~l~~~h~~~i~~l~~aGvD~i~~E-T~~-----~~~Ea~aa~~a~~~~-~-~~pv~vSf~~~~~g~l~~G~~~~~ 256 (591)
.++.+. .+..++.+++.|||.|++. |.+ +.+|-+.+++.+.+. . ..|+++.. ...+..+
T Consensus 15 ~iD~~~----~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv---------~~~s~~~ 81 (285)
T TIGR00674 15 SVDFAA----LEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGT---------GSNATEE 81 (285)
T ss_pred CcCHHH----HHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeC---------CCccHHH
Confidence 356655 4455667889999998864 433 235555555554432 2 35666554 1234556
Q ss_pred HHHHHHhhCCCCeEEEEe
Q psy17603 257 VARTCYNMNPDQLIAVGV 274 (591)
Q Consensus 257 ~~~~~~~~~~~~~~aiGv 274 (591)
+++........+++++-+
T Consensus 82 ~i~~a~~a~~~Gad~v~v 99 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLV 99 (285)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 665554333344454443
No 33
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=86.48 E-value=11 Score=38.74 Aligned_cols=103 Identities=17% Similarity=0.098 Sum_probs=57.9
Q ss_pred CCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeec
Q psy17603 232 PHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIET 311 (591)
Q Consensus 232 ~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET 311 (591)
.+.|+++|+...+ -+.+.++++.+. ..++++|-+||..|.... +.+ -
T Consensus 97 ~~~pvi~si~g~~------~~~~~~~a~~~~---~~G~d~ielN~~cP~~~~-------------------~~~-----~ 143 (289)
T cd02810 97 PGQPLIASVGGSS------KEDYVELARKIE---RAGAKALELNLSCPNVGG-------------------GRQ-----L 143 (289)
T ss_pred CCCeEEEEeccCC------HHHHHHHHHHHH---HhCCCEEEEEcCCCCCCC-------------------Ccc-----c
Confidence 4678998883321 122344455443 347889999997775210 001 0
Q ss_pred ccccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecC
Q psy17603 312 IPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCC 391 (591)
Q Consensus 312 ~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcC 391 (591)
..+...++..++.+|+.. ++||++-.+.+ .+.+++.+.++.+.+.|++.|-...
T Consensus 144 ~~~~~~~~eiv~~vr~~~-------------~~pv~vKl~~~-------------~~~~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 144 GQDPEAVANLLKAVKAAV-------------DIPLLVKLSPY-------------FDLEDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred ccCHHHHHHHHHHHHHcc-------------CCCEEEEeCCC-------------CCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 123344555556666431 46777643322 1234667777777889999887655
Q ss_pred CC
Q psy17603 392 RT 393 (591)
Q Consensus 392 gt 393 (591)
++
T Consensus 198 ~~ 199 (289)
T cd02810 198 TI 199 (289)
T ss_pred cc
Confidence 43
No 34
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=86.20 E-value=26 Score=36.22 Aligned_cols=38 Identities=11% Similarity=0.003 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHHHhcCC--cEEeecCCCCH------HHHHHHHHHh
Q psy17603 368 LCEPVDKYVTDWLDEGV--ALVGGCCRTYA------EDTLHMKHRL 405 (591)
Q Consensus 368 ~~~~~~~~~~~~~~~Gv--~~VGgcCgtgP------~~i~~l~~~l 405 (591)
+++++.+.++++++... .+++-.|+..| +.++++++..
T Consensus 259 ~~e~i~~~v~~~l~~~~~~~il~~~cgi~~~~~~~~enl~a~v~a~ 304 (306)
T cd00465 259 TDEECIAKVEELVERLGPHYIINPDCGLGPDSDYKPEHLRAVVQLV 304 (306)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEeCCCCCCCCCCCcHHHHHHHHHHh
Confidence 35778888888776554 79999998764 7777777654
No 35
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=85.99 E-value=35 Score=34.92 Aligned_cols=78 Identities=17% Similarity=0.115 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEecc-cC-----CHHHHHHHHHHHHhc-C-CCceEEEEEecCCCcccCCCCHHH
Q psy17603 185 HVSEATMAEWHRPRIQALVEAGADILAIET-IP-----ASKEAQMLCRLLREW-P-HQKAWLSFSCKDDKHISNGESFTQ 256 (591)
Q Consensus 185 ~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET-~~-----~~~Ea~aa~~a~~~~-~-~~pv~vSf~~~~~g~l~~G~~~~~ 256 (591)
.++.+.+ ++.++.+++.|+|.|++.- .+ +.+|-+.+++.+.+. . ..|+++... +.+..+
T Consensus 14 ~iD~~~~----~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~~~~~ 80 (281)
T cd00408 14 EVDLDAL----RRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG---------ANSTRE 80 (281)
T ss_pred CcCHHHH----HHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC---------CccHHH
Confidence 3566654 4555677889999987553 22 246666666666543 2 457776552 234556
Q ss_pred HHHHHHhhCCCCeEEEEec
Q psy17603 257 VARTCYNMNPDQLIAVGVN 275 (591)
Q Consensus 257 ~~~~~~~~~~~~~~aiGvN 275 (591)
+++........+++++.+-
T Consensus 81 ~i~~a~~a~~~Gad~v~v~ 99 (281)
T cd00408 81 AIELARHAEEAGADGVLVV 99 (281)
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 6665543344566666663
No 36
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=85.61 E-value=20 Score=40.47 Aligned_cols=59 Identities=17% Similarity=0.414 Sum_probs=40.1
Q ss_pred CcceeEeeccCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccCC-HHHHHHHHHHHHh-cCC
Q psy17603 156 ARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPA-SKEAQMLCRLLRE-WPH 233 (591)
Q Consensus 156 ~~~~~VagsiGP~ga~l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~-~~Ea~aa~~a~~~-~~~ 233 (591)
..+..|++++|+... ..+|++.|+++|+|+|.+-+-.. .......++.+|+ +|+
T Consensus 234 ~~~l~vgaavg~~~~------------------------~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~ 289 (505)
T PLN02274 234 DGKLLVGAAIGTRES------------------------DKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPE 289 (505)
T ss_pred CCCEEEEEEEcCCcc------------------------HHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCC
Confidence 346788888987311 34899999999999999988432 2233355666664 566
Q ss_pred CceEE
Q psy17603 234 QKAWL 238 (591)
Q Consensus 234 ~pv~v 238 (591)
.++++
T Consensus 290 ~~vi~ 294 (505)
T PLN02274 290 LDVIG 294 (505)
T ss_pred CcEEE
Confidence 66664
No 37
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=85.44 E-value=22 Score=37.77 Aligned_cols=43 Identities=12% Similarity=0.180 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCC--CEEEec-ccCCHHHHHHHHHHHH-hcCCCceEE
Q psy17603 196 RPRIQALVEAGA--DILAIE-TIPASKEAQMLCRLLR-EWPHQKAWL 238 (591)
Q Consensus 196 ~~~i~~l~~aGv--D~i~~E-T~~~~~Ea~aa~~a~~-~~~~~pv~v 238 (591)
.++++.|+++|+ |+|.+- |-++...+..+++.+| .+|+.|+++
T Consensus 99 ~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~ 145 (326)
T PRK05458 99 YDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIA 145 (326)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEE
Confidence 478889999965 999985 4566666666777777 456677665
No 38
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=85.19 E-value=15 Score=38.25 Aligned_cols=27 Identities=15% Similarity=0.354 Sum_probs=22.1
Q ss_pred EecCCCCccceeecccccHHHHHHHHH
Q psy17603 298 VYPNSGEHILAIETIPASKEAQMLCRL 324 (591)
Q Consensus 298 ~l~~aG~D~l~iET~~d~~E~~~a~~~ 324 (591)
+|.++|+|.+.+|...+.+|++...+.
T Consensus 169 ay~~AGAD~vfi~g~~~~e~i~~~~~~ 195 (285)
T TIGR02317 169 AYVEAGADMIFPEALTSLEEFRQFAKA 195 (285)
T ss_pred HHHHcCCCEEEeCCCCCHHHHHHHHHh
Confidence 456799999999999999988866554
No 39
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=84.84 E-value=1.3 Score=45.75 Aligned_cols=44 Identities=25% Similarity=0.218 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEe
Q psy17603 195 HRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSC 242 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~ 242 (591)
--+|+++|+++|+|.|..|-+.+.+|.+..+++++ .|+.+.++-
T Consensus 168 AI~Ra~AY~eAGAD~if~~al~~~e~i~~f~~av~----~pl~~N~t~ 211 (289)
T COG2513 168 AIERAQAYVEAGADAIFPEALTDLEEIRAFAEAVP----VPLPANITE 211 (289)
T ss_pred HHHHHHHHHHcCCcEEccccCCCHHHHHHHHHhcC----CCeeeEeec
Confidence 34688899999999999999999999888887765 567776654
No 40
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=84.60 E-value=16 Score=38.55 Aligned_cols=69 Identities=17% Similarity=0.156 Sum_probs=39.9
Q ss_pred HHcCCCEEEecccCCHHHH---HHHHHHHHhc-CCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCC
Q psy17603 203 VEAGADILAIETIPASKEA---QMLCRLLREW-PHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVR 278 (591)
Q Consensus 203 ~~aGvD~i~~ET~~~~~Ea---~aa~~a~~~~-~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~ 278 (591)
.+.|+|++..|.+..-.-. +.....++.. .+.|+++++...+ .+.+.++++.+ ...+.++|-+||..
T Consensus 28 ~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~------~~~~~~aa~~~---~~~G~d~IelN~gc 98 (319)
T TIGR00737 28 AEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSD------PDTMAEAAKIN---EELGADIIDINMGC 98 (319)
T ss_pred HHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCC------HHHHHHHHHHH---HhCCCCEEEEECCC
Confidence 3568999999998764211 1112222222 3578888873221 12334444444 34578999999987
Q ss_pred ch
Q psy17603 279 PL 280 (591)
Q Consensus 279 p~ 280 (591)
|.
T Consensus 99 P~ 100 (319)
T TIGR00737 99 PV 100 (319)
T ss_pred CH
Confidence 73
No 41
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=84.24 E-value=22 Score=37.51 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=29.5
Q ss_pred HHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCC
Q psy17603 199 IQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGE 252 (591)
Q Consensus 199 i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~ 252 (591)
++.+.+.|+|.+.++.-.++.|++.. +++ .+.+.+.+.+...+..|+
T Consensus 246 l~~~~~~g~d~~~~d~~~dl~~~~~~------~g~-~~~i~Gnidp~~~l~~gt 292 (339)
T PRK06252 246 LEEMADCGFDGISIDEKVDVKTAKEN------VGD-RAALIGNVSTSFTLLNGT 292 (339)
T ss_pred HHHHHhcCCCeeccCCCCCHHHHHHH------hCC-CeEEEeccCcHHHhcCCC
Confidence 44566789999988887788775432 222 345556665534455554
No 42
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=84.21 E-value=32 Score=35.57 Aligned_cols=17 Identities=12% Similarity=0.304 Sum_probs=12.6
Q ss_pred HHHHcC-CCEEEecccCC
Q psy17603 201 ALVEAG-ADILAIETIPA 217 (591)
Q Consensus 201 ~l~~aG-vD~i~~ET~~~ 217 (591)
.+.+.| ++++.++|+..
T Consensus 28 ~~~~~g~~g~v~~~ti~~ 45 (296)
T cd04740 28 RVADLGKLGAIVTKSITL 45 (296)
T ss_pred HHHhcCCceEEEECCcCC
Confidence 344566 99999999864
No 43
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=84.11 E-value=32 Score=36.40 Aligned_cols=70 Identities=14% Similarity=0.090 Sum_probs=38.1
Q ss_pred HHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecC
Q psy17603 199 IQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNC 276 (591)
Q Consensus 199 i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC 276 (591)
+..+.+.|+|.+.++...++.|++. .+. -.+.+.+.+.+...+..|+ .+++.+.+.+.-..+-..++..|
T Consensus 248 ~~~l~~~g~d~ls~d~~~~l~~~~~------~~g-~~~~i~Gnidp~~ll~~gt-~eeI~~~v~~~l~~~~~Il~~gc 317 (340)
T TIGR01463 248 LRDIANNGCFGFSVDMKPGMDHAKR------VIG-GQASLVGNLSPFSTLMNGT-PEKVKKLAKEVLYNGGDIVMPGC 317 (340)
T ss_pred HHHHHHhCCCEEeecCCCCHHHHHH------HcC-CceEEEecCChHHHhcCCC-HHHHHHHHHHHHHcCCeEECCCC
Confidence 3456678999999999888877532 233 3355566665544444453 34444333221112223455556
No 44
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=83.61 E-value=65 Score=34.26 Aligned_cols=42 Identities=12% Similarity=-0.077 Sum_probs=33.5
Q ss_pred CChHHHHHHHHHHHhcCCcEEeecCCC---CHHHHHHHHHHhhhc
Q psy17603 367 DLCEPVDKYVTDWLDEGVALVGGCCRT---YAEDTLHMKHRLDDW 408 (591)
Q Consensus 367 ~~~~~~~~~~~~~~~~Gv~~VGgcCgt---gP~~i~~l~~~l~~~ 408 (591)
.+++.+.+.++.+.+.|++.|.++=.. .|+++.++++.++..
T Consensus 140 ~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~ 184 (333)
T TIGR03217 140 TPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAV 184 (333)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 456889999988889999988766443 689999988888765
No 45
>PLN02321 2-isopropylmalate synthase
Probab=83.38 E-value=96 Score=36.02 Aligned_cols=167 Identities=10% Similarity=0.075 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEecc-cCCHHHHHHHHHHHHhcC-CC------ceEEEEEecCCCcccCCCCHHH
Q psy17603 185 HVSEATMAEWHRPRIQALVEAGADILAIET-IPASKEAQMLCRLLREWP-HQ------KAWLSFSCKDDKHISNGESFTQ 256 (591)
Q Consensus 185 ~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET-~~~~~Ea~aa~~a~~~~~-~~------pv~vSf~~~~~g~l~~G~~~~~ 256 (591)
.++.++-.++.+ .|.+.|+|.|-+-. +.+..+..++..+.+... .. |++++++-- ....+..
T Consensus 104 ~~s~eeKl~Ia~----~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra------~~~dId~ 173 (632)
T PLN02321 104 TLTSKEKLDIAR----QLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRC------NKKDIDA 173 (632)
T ss_pred CCCHHHHHHHHH----HHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhc------cHHhHHH
Confidence 478888887776 57788999997744 334456555444433321 11 344444211 1233444
Q ss_pred HHHHHHhhCCCCeEEEEe-cCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhcccccccc
Q psy17603 257 VARTCYNMNPDQLIAVGV-NCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWL 335 (591)
Q Consensus 257 ~~~~~~~~~~~~~~aiGv-NC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~~~~ 335 (591)
+++.+.. .....|.+ ..+++.++..-++. ..+ ..++.++.+++.+|+.+
T Consensus 174 A~~al~~---a~~~~I~i~~stSd~h~~~~l~~---t~e------------------e~l~~~~~~V~~Ak~~G------ 223 (632)
T PLN02321 174 AWEAVKH---AKRPRIHTFIATSEIHMEHKLRK---TPD------------------EVVEIARDMVKYARSLG------ 223 (632)
T ss_pred HHHHhcC---CCCCEEEEEEcCCHHHHHHHhCC---CHH------------------HHHHHHHHHHHHHHHcC------
Confidence 5444311 11112222 34666665544321 100 01334556667777653
Q ss_pred ccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCC---CCHHHHHHHHHHhhhcc
Q psy17603 336 SFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCR---TYAEDTLHMKHRLDDWV 409 (591)
Q Consensus 336 s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCg---tgP~~i~~l~~~l~~~~ 409 (591)
..-+.+ +.. | . +..+++.+.+.++.+.+.|++.|.+|=. ..|..+..+++.++...
T Consensus 224 --------~~~v~f---s~E-D--a----~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~ 282 (632)
T PLN02321 224 --------CEDVEF---SPE-D--A----GRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANT 282 (632)
T ss_pred --------CceEEE---ecc-c--C----CCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhc
Confidence 111111 010 0 1 2345678888888889999999877643 36999999999887653
No 46
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=83.02 E-value=11 Score=39.12 Aligned_cols=38 Identities=16% Similarity=0.311 Sum_probs=30.8
Q ss_pred hHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHh
Q psy17603 282 VSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLR 326 (591)
Q Consensus 282 i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~ 326 (591)
+...|+... +|.++|+|.|..|-+.|.+|.+...++++
T Consensus 165 ld~AI~Ra~-------AY~eAGAD~if~~al~~~e~i~~f~~av~ 202 (289)
T COG2513 165 LDDAIERAQ-------AYVEAGADAIFPEALTDLEEIRAFAEAVP 202 (289)
T ss_pred HHHHHHHHH-------HHHHcCCcEEccccCCCHHHHHHHHHhcC
Confidence 556666544 56789999999999999999998887764
No 47
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=82.65 E-value=39 Score=35.31 Aligned_cols=78 Identities=17% Similarity=0.083 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEec-ccC-----CHHHHHHHHHHHHhcC--CCceEEEEEecCCCcccCCCCHHH
Q psy17603 185 HVSEATMAEWHRPRIQALVEAGADILAIE-TIP-----ASKEAQMLCRLLREWP--HQKAWLSFSCKDDKHISNGESFTQ 256 (591)
Q Consensus 185 ~~~~e~l~~~h~~~i~~l~~aGvD~i~~E-T~~-----~~~Ea~aa~~a~~~~~--~~pv~vSf~~~~~g~l~~G~~~~~ 256 (591)
.++++. +++.++.+++.|+|.|++- |-+ +.+|=+.+++.+.+.. ..|+++.. .+.+..+
T Consensus 21 ~vD~~a----~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~---------g~~~t~e 87 (299)
T COG0329 21 SVDEEA----LRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGV---------GSNSTAE 87 (299)
T ss_pred CcCHHH----HHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEec---------CCCcHHH
Confidence 366666 4555667889999976654 322 3467666777666543 25766544 2345667
Q ss_pred HHHHHHhhCCCCeEEEEec
Q psy17603 257 VARTCYNMNPDQLIAVGVN 275 (591)
Q Consensus 257 ~~~~~~~~~~~~~~aiGvN 275 (591)
+++........+++++-+=
T Consensus 88 ai~lak~a~~~Gad~il~v 106 (299)
T COG0329 88 AIELAKHAEKLGADGILVV 106 (299)
T ss_pred HHHHHHHHHhcCCCEEEEe
Confidence 7776654445566766653
No 48
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=82.27 E-value=18 Score=35.75 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCcEEeecCCC--CHH-HHHHHHHH
Q psy17603 371 PVDKYVTDWLDEGVALVGGCCRT--YAE-DTLHMKHR 404 (591)
Q Consensus 371 ~~~~~~~~~~~~Gv~~VGgcCgt--gP~-~i~~l~~~ 404 (591)
++.+-++++.+.|+++|-.-|.. .|. .+.++++.
T Consensus 86 ptlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~ 122 (229)
T COG3010 86 PTLKEVDALAEAGADIIAFDATDRPRPDGDLEELIAR 122 (229)
T ss_pred ccHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHH
Confidence 34555677788999988776654 555 66666665
No 49
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=82.00 E-value=60 Score=32.64 Aligned_cols=43 Identities=12% Similarity=-0.007 Sum_probs=33.3
Q ss_pred CChHHHHHHHHHHHhcCCcEEeecCC---CCHHHHHHHHHHhhhcc
Q psy17603 367 DLCEPVDKYVTDWLDEGVALVGGCCR---TYAEDTLHMKHRLDDWV 409 (591)
Q Consensus 367 ~~~~~~~~~~~~~~~~Gv~~VGgcCg---tgP~~i~~l~~~l~~~~ 409 (591)
.+++.+.+.++.+.+.|++.|.++=. ..|+.+..+++.+++..
T Consensus 143 ~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~ 188 (265)
T cd03174 143 TDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREAL 188 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhC
Confidence 45678899999999999987665422 36999999999887753
No 50
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=81.94 E-value=33 Score=36.60 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhcCCcEEeecCCC
Q psy17603 370 EPVDKYVTDWLDEGVALVGGCCRT 393 (591)
Q Consensus 370 ~~~~~~~~~~~~~Gv~~VGgcCgt 393 (591)
+++.+.++.+.+.|++.|=.-.++
T Consensus 225 ~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 225 EELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCc
Confidence 456677777778898877665443
No 51
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=81.60 E-value=25 Score=37.12 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=37.9
Q ss_pred HHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCC--HHHHHHHHHh--hCCCCeEEEE
Q psy17603 198 RIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGES--FTQVARTCYN--MNPDQLIAVG 273 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~--~~~~~~~~~~--~~~~~~~aiG 273 (591)
.++.+.+.|+|++-++.-.++.|++. ++. ..+.+.+.+.+...+. |+. +.+.++.+.+ ....+-..++
T Consensus 248 ~~~~l~~~g~d~~~~~~~~~~~~~~~------~~~-~~~~l~Gni~~~~~l~-gt~eei~~~v~~~i~~~~~~~~gfIl~ 319 (343)
T PF01208_consen 248 ILDDLADLGADVLSVDEKVDLAEAKR------KLG-DKIVLMGNIDPVSLLF-GTPEEIEEEVKRLIEEGLAGGGGFILS 319 (343)
T ss_dssp GHHHHHTSS-SEEEE-TTS-HHHHHH------HHT-TSSEEEEEB-G-GGGG-S-HHHHHHHHHHHHHHTHCTSSSEEBE
T ss_pred HHHHHHhcCCCEEEEcCCCCHHHHHH------HhC-CCeEEECCCCcccccc-CCHHHHHHHHHHHHHHhcCCCCCEEEe
Confidence 34456789999999987777755432 333 3445566676654555 643 4444544443 2334445678
Q ss_pred ecC
Q psy17603 274 VNC 276 (591)
Q Consensus 274 vNC 276 (591)
..|
T Consensus 320 ~gc 322 (343)
T PF01208_consen 320 PGC 322 (343)
T ss_dssp BSS
T ss_pred CCC
Confidence 888
No 52
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=81.37 E-value=66 Score=33.44 Aligned_cols=76 Identities=12% Similarity=0.061 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEec-ccC-----CHHHHHHHHHHHHhc-C-CCceEEEEEecCCCcccCCCCHHH
Q psy17603 185 HVSEATMAEWHRPRIQALVEAGADILAIE-TIP-----ASKEAQMLCRLLREW-P-HQKAWLSFSCKDDKHISNGESFTQ 256 (591)
Q Consensus 185 ~~~~e~l~~~h~~~i~~l~~aGvD~i~~E-T~~-----~~~Ea~aa~~a~~~~-~-~~pv~vSf~~~~~g~l~~G~~~~~ 256 (591)
.++.+. ++..++.+++.|||.|++. |.+ +.+|-+.+++.+.+. . ..|+++.. |.+..+
T Consensus 22 ~iD~~~----l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv----------~~~t~~ 87 (296)
T TIGR03249 22 SFDEAA----YRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGV----------GGNTSD 87 (296)
T ss_pred CcCHHH----HHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec----------CccHHH
Confidence 356655 5566678889999998764 433 245666666655432 2 35777654 123456
Q ss_pred HHHHHHhhCCCCeEEEEe
Q psy17603 257 VARTCYNMNPDQLIAVGV 274 (591)
Q Consensus 257 ~~~~~~~~~~~~~~aiGv 274 (591)
+++........+++++.+
T Consensus 88 ai~~a~~a~~~Gadav~~ 105 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLL 105 (296)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 666554333456666655
No 53
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=80.93 E-value=73 Score=32.98 Aligned_cols=76 Identities=12% Similarity=0.015 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEec-ccC-----CHHHHHHHHHHHHhc--CCCceEEEEEecCCCcccCCCCHHH
Q psy17603 185 HVSEATMAEWHRPRIQALVEAGADILAIE-TIP-----ASKEAQMLCRLLREW--PHQKAWLSFSCKDDKHISNGESFTQ 256 (591)
Q Consensus 185 ~~~~e~l~~~h~~~i~~l~~aGvD~i~~E-T~~-----~~~Ea~aa~~a~~~~--~~~pv~vSf~~~~~g~l~~G~~~~~ 256 (591)
.++.+. .+..++.+++.|||.|++. |.+ +.+|-+.+++.+.+. ...|+++.... +..+
T Consensus 17 ~iD~~~----l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~----------~t~~ 82 (289)
T cd00951 17 SFDEDA----YRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY----------GTAT 82 (289)
T ss_pred CcCHHH----HHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC----------CHHH
Confidence 466666 4455667888999988655 433 245655566554432 24688866521 2345
Q ss_pred HHHHHHhhCCCCeEEEEe
Q psy17603 257 VARTCYNMNPDQLIAVGV 274 (591)
Q Consensus 257 ~~~~~~~~~~~~~~aiGv 274 (591)
+++........+++++.+
T Consensus 83 ~i~~a~~a~~~Gad~v~~ 100 (289)
T cd00951 83 AIAYAQAAEKAGADGILL 100 (289)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 555443333445566555
No 54
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=80.92 E-value=17 Score=38.58 Aligned_cols=52 Identities=17% Similarity=0.057 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCC
Q psy17603 218 SKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVR 278 (591)
Q Consensus 218 ~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~ 278 (591)
.++....++.+++..+.|+++++...+ -+.+.++++.+. ..++++|-+|+..
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~~------~~e~~~~a~~~~---~agad~ielN~sc 137 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGSS------AGGWVDYARQIE---QAGADALELNIYY 137 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccCC------HHHHHHHHHHHH---HcCCCEEEEeCCC
Confidence 334333333343334689998883311 012234444442 3468889898754
No 55
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=80.83 E-value=73 Score=33.28 Aligned_cols=76 Identities=16% Similarity=0.066 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEec-ccC-----CHHHHHHHHHHHHh-cC-CCceEEEEEecCCCcccCCCCHHH
Q psy17603 185 HVSEATMAEWHRPRIQALVEAGADILAIE-TIP-----ASKEAQMLCRLLRE-WP-HQKAWLSFSCKDDKHISNGESFTQ 256 (591)
Q Consensus 185 ~~~~e~l~~~h~~~i~~l~~aGvD~i~~E-T~~-----~~~Ea~aa~~a~~~-~~-~~pv~vSf~~~~~g~l~~G~~~~~ 256 (591)
.++.+. ++..++.+++.|||.|++. |.+ +.+|-+.+++.+.+ .. ..|+++... + +..+
T Consensus 24 ~iD~~~----l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~---------~-~t~~ 89 (303)
T PRK03620 24 SFDEAA----YREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG---------G-GTAQ 89 (303)
T ss_pred CcCHHH----HHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC---------C-CHHH
Confidence 466666 4455667888999998664 332 23565666665543 23 358776551 1 4456
Q ss_pred HHHHHHhhCCCCeEEEEe
Q psy17603 257 VARTCYNMNPDQLIAVGV 274 (591)
Q Consensus 257 ~~~~~~~~~~~~~~aiGv 274 (591)
+++.+......+++++-+
T Consensus 90 ~i~~~~~a~~~Gadav~~ 107 (303)
T PRK03620 90 AIEYAQAAERAGADGILL 107 (303)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 666554333456666655
No 56
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=80.61 E-value=16 Score=37.60 Aligned_cols=88 Identities=22% Similarity=0.223 Sum_probs=48.0
Q ss_pred HHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCC------CcccCCCCHHHHHHHHHhhCCCCeEEEEe
Q psy17603 201 ALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDD------KHISNGESFTQVARTCYNMNPDQLIAVGV 274 (591)
Q Consensus 201 ~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~------g~l~~G~~~~~~~~~~~~~~~~~~~aiGv 274 (591)
.+.++||+.+-+|-- .|....++++.+ .+.||+--+=+.+- +...-|.+-
T Consensus 102 ~~~~aGa~aVkiEdg---~~~~~~I~al~~-agIpV~gHiGL~pq~~~~~gg~~i~grt~-------------------- 157 (264)
T PRK00311 102 LMKEAGAHAVKLEGG---EEVAETIKRLVE-RGIPVMGHLGLTPQSVNVLGGYKVQGRDE-------------------- 157 (264)
T ss_pred HHHHhCCeEEEEcCc---HHHHHHHHHHHH-CCCCEeeeecccceeecccCCeeeecCCH--------------------
Confidence 444599999999984 344444555554 47787633322211 111112211
Q ss_pred cCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHH
Q psy17603 275 NCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLL 325 (591)
Q Consensus 275 NC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~ 325 (591)
+....+++..+ +|.++|+|.+++|-.++ ++++...+.+
T Consensus 158 -----~~a~~~i~ra~-------a~~eAGA~~i~lE~v~~-~~~~~i~~~l 195 (264)
T PRK00311 158 -----EAAEKLLEDAK-------ALEEAGAFALVLECVPA-ELAKEITEAL 195 (264)
T ss_pred -----HHHHHHHHHHH-------HHHHCCCCEEEEcCCCH-HHHHHHHHhC
Confidence 11233444433 34568999999999976 5555555544
No 57
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=80.57 E-value=10 Score=36.24 Aligned_cols=59 Identities=14% Similarity=0.281 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhc
Q psy17603 254 FTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREW 328 (591)
Q Consensus 254 ~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~ 328 (591)
+.++++.+....+.... |.|.|...+.+..+++ +|+|.+.+.||+ .++++.++..+++.
T Consensus 66 i~~av~~~~~~~~~~~~-I~VEv~~~ee~~ea~~--------------~g~d~I~lD~~~-~~~~~~~v~~l~~~ 124 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKK-IEVEVENLEEAEEALE--------------AGADIIMLDNMS-PEDLKEAVEELREL 124 (169)
T ss_dssp HHHHHHHHHHHSTTTSE-EEEEESSHHHHHHHHH--------------TT-SEEEEES-C-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCce-EEEEcCCHHHHHHHHH--------------hCCCEEEecCcC-HHHHHHHHHHHhhc
Confidence 66777776654443332 6666655444433332 579999999994 58888888877765
No 58
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=80.57 E-value=54 Score=34.47 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=31.1
Q ss_pred CCChHHHHHHHHHHHhcCCcEEeecCCC----CHHHHHHHHHHh
Q psy17603 366 RDLCEPVDKYVTDWLDEGVALVGGCCRT----YAEDTLHMKHRL 405 (591)
Q Consensus 366 ~~~~~~~~~~~~~~~~~Gv~~VGgcCgt----gP~~i~~l~~~l 405 (591)
..+++++.+.++++++.|..+++.-|+. .++.++++++..
T Consensus 281 ~gt~e~i~~~~~~~l~~g~~Il~~Gc~i~~~tp~env~a~v~a~ 324 (326)
T cd03307 281 NGTPEDVKAEARKCLEDGVDILAPGCGIAPRTPLANLKAMVEAR 324 (326)
T ss_pred CCCHHHHHHHHHHHHHccCCEecCcCCCCCCCCHHHHHHHHHHH
Confidence 4567889999999888887899988986 446777777654
No 59
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=80.50 E-value=47 Score=34.48 Aligned_cols=21 Identities=5% Similarity=-0.084 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCCcEEeecC
Q psy17603 371 PVDKYVTDWLDEGVALVGGCC 391 (591)
Q Consensus 371 ~~~~~~~~~~~~Gv~~VGgcC 391 (591)
+..++++.+.+.|++.|-+-.
T Consensus 170 ~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 170 DITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred hHHHHHHHHHHcCCCEEEEEc
Confidence 455566666789998886533
No 60
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=80.37 E-value=32 Score=35.94 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=22.6
Q ss_pred ecCCCCccceeecccccHHHHHHHHHH
Q psy17603 299 YPNSGEHILAIETIPASKEAQMLCRLL 325 (591)
Q Consensus 299 l~~aG~D~l~iET~~d~~E~~~a~~~~ 325 (591)
|.++|+|.+.+|...+.+|++...+.+
T Consensus 174 Y~eAGAD~ifi~~~~~~~ei~~~~~~~ 200 (294)
T TIGR02319 174 YVAAGADCIFLEAMLDVEEMKRVRDEI 200 (294)
T ss_pred HHHhCCCEEEecCCCCHHHHHHHHHhc
Confidence 457899999999999999988776653
No 61
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=80.20 E-value=75 Score=33.85 Aligned_cols=170 Identities=10% Similarity=0.115 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecccCC------------------HHHHHHHHHHHHhcCCCceEEEEEec-C----
Q psy17603 188 EATMAEWHRPRIQALVEAGADILAIETIPA------------------SKEAQMLCRLLREWPHQKAWLSFSCK-D---- 244 (591)
Q Consensus 188 ~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~------------------~~Ea~aa~~a~~~~~~~pv~vSf~~~-~---- 244 (591)
.+++.++|.+++ +.|+=+|++|...- +...+.+.++++++ +.++++.+.-. .
T Consensus 36 t~~~~~~y~~rA----~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~-G~~i~~QL~H~G~~~~~ 110 (337)
T PRK13523 36 TNFHLIHYGTRA----AGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDH-GAKAAIQLAHAGRKAEL 110 (337)
T ss_pred CHHHHHHHHHHH----cCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhc-CCEEEEEccCCCCCCCC
Confidence 456677888664 47899999884321 12345566666663 55666665221 0
Q ss_pred --------------CCcccCCCC---HHHHHHHHH----hhCCCCeEEEEecCCCchhhHHHHHHHHhcC-CceEEecCC
Q psy17603 245 --------------DKHISNGES---FTQVARTCY----NMNPDQLIAVGVNCVRPLMVSSLIEQLKTEN-IPLVVYPNS 302 (591)
Q Consensus 245 --------------~g~l~~G~~---~~~~~~~~~----~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~-~~i~~l~~a 302 (591)
.......-+ +.++++.+. .....+.++|-|||.+-..+.+.+......+ .+- +
T Consensus 111 ~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~y-----G 185 (337)
T PRK13523 111 EGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEY-----G 185 (337)
T ss_pred CCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCC-----C
Confidence 001111222 333333221 1224689999999988776666665543221 111 1
Q ss_pred CCccceeecccccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhc
Q psy17603 303 GEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDE 382 (591)
Q Consensus 303 G~D~l~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 382 (591)
| + +|. ...=+...+.++|+.. +.||.+-.+..+ + .. .|.++++..++++.+.+.
T Consensus 186 G-s---len--R~Rf~~eii~~ir~~~-------------~~~v~vRis~~d-~--~~----~G~~~~e~~~i~~~l~~~ 239 (337)
T PRK13523 186 G-S---PEN--RYRFLREIIDAVKEVW-------------DGPLFVRISASD-Y--HP----GGLTVQDYVQYAKWMKEQ 239 (337)
T ss_pred C-C---HHH--HHHHHHHHHHHHHHhc-------------CCCeEEEecccc-c--CC----CCCCHHHHHHHHHHHHHc
Confidence 2 1 110 0111233444445431 245555444321 1 11 144567888888888889
Q ss_pred CCcEEeecCCC
Q psy17603 383 GVALVGGCCRT 393 (591)
Q Consensus 383 Gv~~VGgcCgt 393 (591)
|+++|-+..|+
T Consensus 240 gvD~i~vs~g~ 250 (337)
T PRK13523 240 GVDLIDVSSGA 250 (337)
T ss_pred CCCEEEeCCCC
Confidence 99999887775
No 62
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=80.20 E-value=71 Score=33.00 Aligned_cols=73 Identities=11% Similarity=0.185 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCCCEEEeccc------------CCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHH
Q psy17603 195 HRPRIQALVEAGADILAIETI------------PASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCY 262 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET~------------~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~ 262 (591)
|...++.+.++|+|.|-++-. .+.+.+..+++++++..+.|+++-++.. -+.+.+.++.+.
T Consensus 104 ~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~-------~~~~~~~a~~~~ 176 (296)
T cd04740 104 FVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPN-------VTDIVEIARAAE 176 (296)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCC-------chhHHHHHHHHH
Confidence 555666777889999987522 2345567788888875578988876422 123455555553
Q ss_pred hhCCCCeEEEE-ecCC
Q psy17603 263 NMNPDQLIAVG-VNCV 277 (591)
Q Consensus 263 ~~~~~~~~aiG-vNC~ 277 (591)
+ .++++|- +|++
T Consensus 177 ~---~G~d~i~~~nt~ 189 (296)
T cd04740 177 E---AGADGLTLINTL 189 (296)
T ss_pred H---cCCCEEEEECCC
Confidence 2 3455543 4654
No 63
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=79.78 E-value=68 Score=35.79 Aligned_cols=125 Identities=13% Similarity=0.064 Sum_probs=74.8
Q ss_pred CCCHHHHHHHHHhh---CCCCeEEEEecCCC----chh-hHHHHHHHHhcCCceEEecCCCCccceee-cccccHHHHHH
Q psy17603 251 GESFTQVARTCYNM---NPDQLIAVGVNCVR----PLM-VSSLIEQLKTENIPLVVYPNSGEHILAIE-TIPASKEAQML 321 (591)
Q Consensus 251 G~~~~~~~~~~~~~---~~~~~~aiGvNC~~----p~~-i~~~l~~l~~~~~~i~~l~~aG~D~l~iE-T~~d~~E~~~a 321 (591)
.++..+-++.+.+. ...+....|.|-.+ |.. +...++...+ .|+|++.+= -+.|...++.+
T Consensus 68 ~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~----------~Gidi~Rifd~lnd~~n~~~a 137 (468)
T PRK12581 68 NEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQ----------NGIDVFRIFDALNDPRNIQQA 137 (468)
T ss_pred CCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHHHHH----------CCCCEEEEcccCCCHHHHHHH
Confidence 44555555555431 12345556777643 333 4444444433 478888544 46678888889
Q ss_pred HHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCCC---CHHHH
Q psy17603 322 CRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRT---YAEDT 398 (591)
Q Consensus 322 ~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCgt---gP~~i 398 (591)
++.+|+.+... ..-++|-.+ +..+.+.+.+.++++.++|++.|.++=.. .|..+
T Consensus 138 i~~ak~~G~~~-----------~~~i~yt~s------------p~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v 194 (468)
T PRK12581 138 LRAVKKTGKEA-----------QLCIAYTTS------------PVHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAA 194 (468)
T ss_pred HHHHHHcCCEE-----------EEEEEEEeC------------CcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHH
Confidence 99998865210 011222110 11234668888888899999988776433 69999
Q ss_pred HHHHHHhhhc
Q psy17603 399 LHMKHRLDDW 408 (591)
Q Consensus 399 ~~l~~~l~~~ 408 (591)
.++++.+++.
T Consensus 195 ~~Lv~alk~~ 204 (468)
T PRK12581 195 KELVSGIKAM 204 (468)
T ss_pred HHHHHHHHhc
Confidence 9999988763
No 64
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=79.08 E-value=77 Score=32.53 Aligned_cols=77 Identities=14% Similarity=0.057 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEec-ccC-----CHHHHHHHHHHHHhc-C-CCceEEEEEecCCCcccCCCCHHH
Q psy17603 185 HVSEATMAEWHRPRIQALVEAGADILAIE-TIP-----ASKEAQMLCRLLREW-P-HQKAWLSFSCKDDKHISNGESFTQ 256 (591)
Q Consensus 185 ~~~~e~l~~~h~~~i~~l~~aGvD~i~~E-T~~-----~~~Ea~aa~~a~~~~-~-~~pv~vSf~~~~~g~l~~G~~~~~ 256 (591)
.++.+.++ ..++.++++|+|.+++. |.+ +.+|-+.+++.+.+. . ..|+++.. .+.+..+
T Consensus 17 ~iD~~~~~----~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv---------~~~~~~~ 83 (284)
T cd00950 17 SVDFDALE----RLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGT---------GSNNTAE 83 (284)
T ss_pred CcCHHHHH----HHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEecc---------CCccHHH
Confidence 46666644 45557888999998766 332 345666666665543 2 34665444 2335566
Q ss_pred HHHHHHhhCCCCeEEEEe
Q psy17603 257 VARTCYNMNPDQLIAVGV 274 (591)
Q Consensus 257 ~~~~~~~~~~~~~~aiGv 274 (591)
+++.+......++++|.+
T Consensus 84 ~~~~a~~a~~~G~d~v~~ 101 (284)
T cd00950 84 AIELTKRAEKAGADAALV 101 (284)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 666554333344444443
No 65
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=78.98 E-value=54 Score=35.39 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEE-EecccCCH-----HH-HHHHHHHHHh---cCCCceEEEEEecCCCcccCCCCH
Q psy17603 185 HVSEATMAEWHRPRIQALVEAGADIL-AIETIPAS-----KE-AQMLCRLLRE---WPHQKAWLSFSCKDDKHISNGESF 254 (591)
Q Consensus 185 ~~~~e~l~~~h~~~i~~l~~aGvD~i-~~ET~~~~-----~E-a~aa~~a~~~---~~~~pv~vSf~~~~~g~l~~G~~~ 254 (591)
.++.+++.+. ++.+.++|+|+| .-|+..+. +| .+++.+++++ -++...++.+.+. +. .
T Consensus 142 gld~~~la~~----~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit-------~~-~ 209 (367)
T cd08205 142 GLSPEELAEL----AYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNIT-------GD-P 209 (367)
T ss_pred CCCHHHHHHH----HHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcC-------CC-H
Confidence 3677775554 446778999998 55665543 22 3333444432 2344333333221 22 2
Q ss_pred HHHHHHHHhhCCCCeEEEEec
Q psy17603 255 TQVARTCYNMNPDQLIAVGVN 275 (591)
Q Consensus 255 ~~~~~~~~~~~~~~~~aiGvN 275 (591)
.++++........+++++.+|
T Consensus 210 ~e~i~~a~~a~~~Gad~vmv~ 230 (367)
T cd08205 210 DELRRRADRAVEAGANALLIN 230 (367)
T ss_pred HHHHHHHHHHHHcCCCEEEEe
Confidence 566665443333455566655
No 66
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=78.72 E-value=66 Score=33.41 Aligned_cols=48 Identities=10% Similarity=0.119 Sum_probs=28.4
Q ss_pred ccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEee
Q psy17603 314 ASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGG 389 (591)
Q Consensus 314 d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGg 389 (591)
+.+.+...++++|+.. ++||++..+.. .+++.+.++.+.+.|++.|-.
T Consensus 141 ~~~~~~eiv~~vr~~~-------------~~pv~vKl~~~---------------~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 141 DPELAYEVVKAVKEVV-------------KVPVIVKLTPN---------------VTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred CHHHHHHHHHHHHHhc-------------CCCEEEEcCCC---------------chhHHHHHHHHHHcCCCEEEE
Confidence 4455666667776542 46877743321 124555666667889987654
No 67
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=78.46 E-value=48 Score=37.32 Aligned_cols=43 Identities=28% Similarity=0.411 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCCEEEeccc-CCHHHHHHHHHHHHh-cCCCceEE
Q psy17603 196 RPRIQALVEAGADILAIETI-PASKEAQMLCRLLRE-WPHQKAWL 238 (591)
Q Consensus 196 ~~~i~~l~~aGvD~i~~ET~-~~~~Ea~aa~~a~~~-~~~~pv~v 238 (591)
.++++.|+++|+|+|.+.+- ++...+...++.+++ +++.|+++
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~a 287 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIA 287 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEE
Confidence 57888999999999998762 223333445555664 46667665
No 68
>PLN02433 uroporphyrinogen decarboxylase
Probab=78.40 E-value=98 Score=32.93 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=31.1
Q ss_pred CChHHHHHHHHHHHhcCC---cEEeecCCC----CHHHHHHHHHHhhhc
Q psy17603 367 DLCEPVDKYVTDWLDEGV---ALVGGCCRT----YAEDTLHMKHRLDDW 408 (591)
Q Consensus 367 ~~~~~~~~~~~~~~~~Gv---~~VGgcCgt----gP~~i~~l~~~l~~~ 408 (591)
.+++++.+.++++++.+. .++..-|+. -+++|+++++..+..
T Consensus 289 gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~i~~~tp~eNi~a~v~av~~~ 337 (345)
T PLN02433 289 GSKEAIEKEVRDVVKKAGPQGHILNLGHGVLVGTPEENVAHFFDVAREL 337 (345)
T ss_pred CCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCCHHHHHHHHHHHHHh
Confidence 457888888888776543 388887875 468899999887764
No 69
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=78.27 E-value=25 Score=37.16 Aligned_cols=68 Identities=12% Similarity=0.039 Sum_probs=35.4
Q ss_pred HcCCCEEEecccCCHHHHH---HHHHHHHhcC-CCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCCc
Q psy17603 204 EAGADILAIETIPASKEAQ---MLCRLLREWP-HQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRP 279 (591)
Q Consensus 204 ~aGvD~i~~ET~~~~~Ea~---aa~~a~~~~~-~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p 279 (591)
+.|+|+..+|-++...... .....+.... ..|+.+++ .|.++++.++.+......+.++|-+||.-|
T Consensus 31 ~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl---------~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP 101 (321)
T PRK10415 31 EMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQI---------AGSDPKEMADAARINVESGAQIIDINMGCP 101 (321)
T ss_pred HHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEE---------eCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4689999999887643211 1111111101 24555554 244444444433221235788999999666
Q ss_pred h
Q psy17603 280 L 280 (591)
Q Consensus 280 ~ 280 (591)
.
T Consensus 102 ~ 102 (321)
T PRK10415 102 A 102 (321)
T ss_pred H
Confidence 4
No 70
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=78.09 E-value=4 Score=42.57 Aligned_cols=44 Identities=23% Similarity=0.224 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEe
Q psy17603 195 HRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSC 242 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~ 242 (591)
.-+|.++|.++|+|++.+|...+.+|++.+.+.+ +.|+++.++.
T Consensus 168 AI~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~----~~Pl~~n~~~ 211 (292)
T PRK11320 168 AIERAQAYVEAGADMIFPEAMTELEMYRRFADAV----KVPILANITE 211 (292)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhc----CCCEEEEecc
Confidence 5568889999999999999999999988776654 4688877753
No 71
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=77.50 E-value=98 Score=32.46 Aligned_cols=77 Identities=12% Similarity=0.027 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEec-ccC-----CHHHHHHHHHHHHh-cC-CCceEEEEEecCCCcccCCCCHHH
Q psy17603 185 HVSEATMAEWHRPRIQALVEAGADILAIE-TIP-----ASKEAQMLCRLLRE-WP-HQKAWLSFSCKDDKHISNGESFTQ 256 (591)
Q Consensus 185 ~~~~e~l~~~h~~~i~~l~~aGvD~i~~E-T~~-----~~~Ea~aa~~a~~~-~~-~~pv~vSf~~~~~g~l~~G~~~~~ 256 (591)
.++.+. +++.++.+++.|||.|++. |.+ +.+|-+.+++++.+ .. ..|+++... ..+..+
T Consensus 25 ~iD~~~----l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~---------~~~t~~ 91 (309)
T cd00952 25 TVDLDE----TARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGAT---------TLNTRD 91 (309)
T ss_pred CcCHHH----HHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEec---------cCCHHH
Confidence 355555 4556678889999988753 433 24566666665553 22 357665551 234456
Q ss_pred HHHHHHhhCCCCeEEEEe
Q psy17603 257 VARTCYNMNPDQLIAVGV 274 (591)
Q Consensus 257 ~~~~~~~~~~~~~~aiGv 274 (591)
+++.+......+++++.+
T Consensus 92 ai~~a~~A~~~Gad~vlv 109 (309)
T cd00952 92 TIARTRALLDLGADGTML 109 (309)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 665554333445555554
No 72
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=77.45 E-value=37 Score=38.03 Aligned_cols=46 Identities=20% Similarity=0.129 Sum_probs=33.5
Q ss_pred HHHHHHHHHHcCCCEEEecccC-CHHHHHHHHHHHH-hcCCCceEEEE
Q psy17603 195 HRPRIQALVEAGADILAIETIP-ASKEAQMLCRLLR-EWPHQKAWLSF 240 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET~~-~~~Ea~aa~~a~~-~~~~~pv~vSf 240 (591)
..++++.|+++|+|.|++-+-. ...-....++.++ .+++.|+++-+
T Consensus 226 ~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~ 273 (475)
T TIGR01303 226 VGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGN 273 (475)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEec
Confidence 4588999999999999998644 3334455666666 46789998743
No 73
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=77.40 E-value=1.3e+02 Score=33.72 Aligned_cols=85 Identities=9% Similarity=0.035 Sum_probs=53.9
Q ss_pred CCCcccee-ecccccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHH
Q psy17603 302 SGEHILAI-ETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWL 380 (591)
Q Consensus 302 aG~D~l~i-ET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~ 380 (591)
+|+|.+-+ -..+|+..++.+++.+++.+. .+.... ..++. ...+++.+.+.++++.
T Consensus 107 ~Gvd~irif~~lnd~~n~~~~i~~ak~~G~--------------~v~~~i--~~t~~-------p~~t~e~~~~~a~~l~ 163 (467)
T PRK14041 107 YGLDIIRIFDALNDIRNLEKSIEVAKKHGA--------------HVQGAI--SYTVS-------PVHTLEYYLEFARELV 163 (467)
T ss_pred CCcCEEEEEEeCCHHHHHHHHHHHHHHCCC--------------EEEEEE--EeccC-------CCCCHHHHHHHHHHHH
Confidence 47776643 345667778888888886541 111100 00010 1124577888889999
Q ss_pred hcCCcEEeecCCC---CHHHHHHHHHHhhhcc
Q psy17603 381 DEGVALVGGCCRT---YAEDTLHMKHRLDDWV 409 (591)
Q Consensus 381 ~~Gv~~VGgcCgt---gP~~i~~l~~~l~~~~ 409 (591)
+.|++.|.+|=.. .|..+.++++.++...
T Consensus 164 ~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~ 195 (467)
T PRK14041 164 DMGVDSICIKDMAGLLTPKRAYELVKALKKKF 195 (467)
T ss_pred HcCCCEEEECCccCCcCHHHHHHHHHHHHHhc
Confidence 9999888765333 6999999999987753
No 74
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=76.83 E-value=94 Score=32.77 Aligned_cols=42 Identities=21% Similarity=0.161 Sum_probs=33.5
Q ss_pred CCChHHHHHHHHHHHhcCCcEEeecCCC----CHHHHHHHHHHhhh
Q psy17603 366 RDLCEPVDKYVTDWLDEGVALVGGCCRT----YAEDTLHMKHRLDD 407 (591)
Q Consensus 366 ~~~~~~~~~~~~~~~~~Gv~~VGgcCgt----gP~~i~~l~~~l~~ 407 (591)
..+++++.+.++++++.|..+++.-|+. .++.++++++..+.
T Consensus 292 ~gt~eeI~~~v~~~l~~~~~Il~~gcgi~~~tp~eni~a~v~a~~~ 337 (340)
T TIGR01463 292 NGTPEKVKKLAKEVLYNGGDIVMPGCDIDWMTPLENLKAMIEACKS 337 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCeEECCCCCCCCCCCHHHHHHHHHHHHh
Confidence 3567889999999988888999999986 45778888776654
No 75
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=76.40 E-value=1e+02 Score=35.52 Aligned_cols=125 Identities=10% Similarity=0.088 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHhhCC---CCeEEEEecCCC----ch-hhHHHHHHHHhcCCceEEecCCCCccc-eeecccccHHHHHH
Q psy17603 251 GESFTQVARTCYNMNP---DQLIAVGVNCVR----PL-MVSSLIEQLKTENIPLVVYPNSGEHIL-AIETIPASKEAQML 321 (591)
Q Consensus 251 G~~~~~~~~~~~~~~~---~~~~aiGvNC~~----p~-~i~~~l~~l~~~~~~i~~l~~aG~D~l-~iET~~d~~E~~~a 321 (591)
.++..+-++.+...-+ .+...=|.|-.+ |+ .+...++...+ .|+|++ ++..+.|...++.+
T Consensus 59 ~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~----------~Gidv~Rifd~lnd~~n~~~~ 128 (596)
T PRK14042 59 KEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVN----------NGVDVFRVFDALNDARNLKVA 128 (596)
T ss_pred CCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHHHHH----------cCCCEEEEcccCcchHHHHHH
Confidence 5566666666543222 233334556643 43 34445555443 488888 55667888889999
Q ss_pred HHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCCC---CHHHH
Q psy17603 322 CRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRT---YAEDT 398 (591)
Q Consensus 322 ~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCgt---gP~~i 398 (591)
++++|+.+.. -...++|..+ .-.+++.+.+.++++.++|++.|.++=.. .|..+
T Consensus 129 i~~~k~~G~~-----------~~~~i~yt~s------------p~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v 185 (596)
T PRK14042 129 IDAIKSHKKH-----------AQGAICYTTS------------PVHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVT 185 (596)
T ss_pred HHHHHHcCCE-----------EEEEEEecCC------------CCCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHH
Confidence 9999987521 0122333221 12245788999999999999988776433 69999
Q ss_pred HHHHHHhhhc
Q psy17603 399 LHMKHRLDDW 408 (591)
Q Consensus 399 ~~l~~~l~~~ 408 (591)
.++++.+++.
T Consensus 186 ~~lv~alk~~ 195 (596)
T PRK14042 186 VELYAGLKQA 195 (596)
T ss_pred HHHHHHHHhh
Confidence 9999988765
No 76
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=75.77 E-value=1.4e+02 Score=34.42 Aligned_cols=85 Identities=11% Similarity=0.043 Sum_probs=55.4
Q ss_pred CCCccceee-cccccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHH
Q psy17603 302 SGEHILAIE-TIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWL 380 (591)
Q Consensus 302 aG~D~l~iE-T~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~ 380 (591)
+|+|.+-+- ..+|...++.+++.+|+.+. .+.++. .|.. .+-.+++.+.+.++++.
T Consensus 103 ~Gvd~irif~~lnd~~n~~~~i~~ak~~G~--------------~v~~~i----~~t~-----~p~~~~~~~~~~~~~~~ 159 (582)
T TIGR01108 103 NGMDVFRIFDALNDPRNLQAAIQAAKKHGA--------------HAQGTI----SYTT-----SPVHTLETYLDLAEELL 159 (582)
T ss_pred CCCCEEEEEEecCcHHHHHHHHHHHHHcCC--------------EEEEEE----Eecc-----CCCCCHHHHHHHHHHHH
Confidence 477766444 45667888888888887641 111110 0100 00124578889999999
Q ss_pred hcCCcEEeecCC---CCHHHHHHHHHHhhhcc
Q psy17603 381 DEGVALVGGCCR---TYAEDTLHMKHRLDDWV 409 (591)
Q Consensus 381 ~~Gv~~VGgcCg---tgP~~i~~l~~~l~~~~ 409 (591)
++|++.|.+|=. ..|..+..+++.++...
T Consensus 160 ~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~ 191 (582)
T TIGR01108 160 EMGVDSICIKDMAGILTPKAAYELVSALKKRF 191 (582)
T ss_pred HcCCCEEEECCCCCCcCHHHHHHHHHHHHHhC
Confidence 999999876643 36999999999987653
No 77
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=75.56 E-value=56 Score=33.41 Aligned_cols=105 Identities=20% Similarity=0.173 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCC
Q psy17603 187 SEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNP 266 (591)
Q Consensus 187 ~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~ 266 (591)
+.++....-. +.+.++|++.+-+|-- .|....++++.+ .+.||+--+-+.+-.....|
T Consensus 88 ~~~~av~~a~---r~~~~aGa~aVkiEd~---~~~~~~I~al~~-agipV~gHiGL~pq~~~~~g--------------- 145 (254)
T cd06557 88 SPEQALRNAA---RLMKEAGADAVKLEGG---AEVAETIRALVD-AGIPVMGHIGLTPQSVNQLG--------------- 145 (254)
T ss_pred CHHHHHHHHH---HHHHHhCCeEEEEcCc---HHHHHHHHHHHH-cCCCeeccccccceeeeccC---------------
Confidence 3555443322 2445599999999984 355555555554 46787744433221111111
Q ss_pred CCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHH
Q psy17603 267 DQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLL 325 (591)
Q Consensus 267 ~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~ 325 (591)
+....| -..+....+++..+ +|.++|+|.+++|-.++ ++++...+.+
T Consensus 146 -g~~~~g---rt~~~a~~~i~ra~-------a~~~AGA~~i~lE~v~~-~~~~~i~~~v 192 (254)
T cd06557 146 -GYKVQG---KTEEEAERLLEDAL-------ALEEAGAFALVLECVPA-ELAKEITEAL 192 (254)
T ss_pred -Cceecc---CCHHHHHHHHHHHH-------HHHHCCCCEEEEcCCCH-HHHHHHHHhC
Confidence 000000 00111233444433 34578999999999975 5555555554
No 78
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=75.50 E-value=69 Score=32.69 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=31.5
Q ss_pred hhccCHHHHHHHHHHHHHHhcceeeccccc--cChhchhhhcCCCh
Q psy17603 33 FLATAKDAVVQTHRDFIKAGADIVMTNSYQ--ASIGGFMEFLDLDY 76 (591)
Q Consensus 33 ~l~~~Pe~v~~vH~~yl~AGAdiI~TnTy~--as~~~l~~~~g~~~ 76 (591)
..++.+|.+.++-+.--++|++++.-..|- .|+..| -|+..
T Consensus 23 C~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf---~G~G~ 65 (250)
T PRK13397 23 CSIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASF---QGLGL 65 (250)
T ss_pred CccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCccc---CCCCH
Confidence 357899999999999889999999999995 444444 35543
No 79
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=75.42 E-value=48 Score=34.76 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=70.6
Q ss_pred CCCCHHHHH---HHHHHHHHHHHHcCCCEEEecccC-C------------------------HHHHHHHHHHHHhcC--C
Q psy17603 184 EHVSEATMA---EWHRPRIQALVEAGADILAIETIP-A------------------------SKEAQMLCRLLREWP--H 233 (591)
Q Consensus 184 ~~~~~e~l~---~~h~~~i~~l~~aGvD~i~~ET~~-~------------------------~~Ea~aa~~a~~~~~--~ 233 (591)
..++.+++. +.|.+-++...++|.|.|-+..-. . .+....+++++|+.. +
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d 208 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPD 208 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 356666655 556667777788999998776421 0 112345666666543 4
Q ss_pred CceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCC---c-----------hhhHHHHHHHHhcCCceEEe
Q psy17603 234 QKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVR---P-----------LMVSSLIEQLKTENIPLVVY 299 (591)
Q Consensus 234 ~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~---p-----------~~i~~~l~~l~~~~~~i~~l 299 (591)
.|+.+-++. .....+|.+++++++.+......+++.|-+.... + ..-...++.+++..
T Consensus 209 ~~i~vris~--~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~------ 280 (327)
T cd02803 209 FPVGVRLSA--DDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV------ 280 (327)
T ss_pred ceEEEEech--hccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC------
Confidence 466655543 3333456777776665544334556666654311 1 11223444454431
Q ss_pred cCCCCccceeecccccHHHHHHHH
Q psy17603 300 PNSGEHILAIETIPASKEAQMLCR 323 (591)
Q Consensus 300 ~~aG~D~l~iET~~d~~E~~~a~~ 323 (591)
++.++..+-+.+.++++.++.
T Consensus 281 ---~iPVi~~Ggi~t~~~a~~~l~ 301 (327)
T cd02803 281 ---KIPVIAVGGIRDPEVAEEILA 301 (327)
T ss_pred ---CCCEEEeCCCCCHHHHHHHHH
Confidence 345555566666666666653
No 80
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=75.33 E-value=28 Score=35.93 Aligned_cols=77 Identities=19% Similarity=0.142 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEecc-cCC-----HHHHHHHHHHHHh-c-CCCceEEEEEecCCCcccCCCCHHH
Q psy17603 185 HVSEATMAEWHRPRIQALVEAGADILAIET-IPA-----SKEAQMLCRLLRE-W-PHQKAWLSFSCKDDKHISNGESFTQ 256 (591)
Q Consensus 185 ~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET-~~~-----~~Ea~aa~~a~~~-~-~~~pv~vSf~~~~~g~l~~G~~~~~ 256 (591)
.++.+. +++.++.+++.|+|.|++-. .+. .+|-+.+++.+.+ . ...|+++... +.+..+
T Consensus 18 ~id~~~----~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~st~~ 84 (289)
T PF00701_consen 18 SIDEDA----LKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG---------ANSTEE 84 (289)
T ss_dssp SB-HHH----HHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE---------SSSHHH
T ss_pred CcCHHH----HHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc---------chhHHH
Confidence 355554 55566688899999988753 222 3565555555543 2 2457776552 235566
Q ss_pred HHHHHHhhCCCCeEEEEe
Q psy17603 257 VARTCYNMNPDQLIAVGV 274 (591)
Q Consensus 257 ~~~~~~~~~~~~~~aiGv 274 (591)
+++.+......+++++-+
T Consensus 85 ~i~~a~~a~~~Gad~v~v 102 (289)
T PF00701_consen 85 AIELARHAQDAGADAVLV 102 (289)
T ss_dssp HHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHhhcCceEEEE
Confidence 666654333345555554
No 81
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=75.31 E-value=31 Score=35.97 Aligned_cols=101 Identities=19% Similarity=0.250 Sum_probs=54.9
Q ss_pred CCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeec
Q psy17603 232 PHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIET 311 (591)
Q Consensus 232 ~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET 311 (591)
++.|+++|+.... +-+.+.++++.+ ...++++|-+||..|... ..+ ..|..+
T Consensus 98 ~~~p~i~si~G~~-----~~~~~~~~a~~~---~~~gad~ielN~sCP~~~--~~~-------------~~G~~l----- 149 (299)
T cd02940 98 PDKILIASIMCEY-----NKEDWTELAKLV---EEAGADALELNFSCPHGM--PER-------------GMGAAV----- 149 (299)
T ss_pred CCCeEEEEecCCC-----CHHHHHHHHHHH---HhcCCCEEEEECCCCCCC--CCC-------------CCchhh-----
Confidence 4578888884320 112344555554 234688999999887742 101 012211
Q ss_pred ccccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEe
Q psy17603 312 IPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVG 388 (591)
Q Consensus 312 ~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VG 388 (591)
+.+.+.+...++.+++.. ++||++.-... ...+.+.++.+.+.|++.|=
T Consensus 150 ~~~~~~~~~iv~~v~~~~-------------~~Pv~vKl~~~---------------~~~~~~~a~~~~~~Gadgi~ 198 (299)
T cd02940 150 GQDPELVEEICRWVREAV-------------KIPVIAKLTPN---------------ITDIREIARAAKEGGADGVS 198 (299)
T ss_pred ccCHHHHHHHHHHHHHhc-------------CCCeEEECCCC---------------chhHHHHHHHHHHcCCCEEE
Confidence 224455666666666542 47877753311 02345556666788988654
No 82
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=75.24 E-value=15 Score=37.13 Aligned_cols=27 Identities=15% Similarity=0.452 Sum_probs=21.8
Q ss_pred ecCCCCccceeecccccHHHHHHHHHH
Q psy17603 299 YPNSGEHILAIETIPASKEAQMLCRLL 325 (591)
Q Consensus 299 l~~aG~D~l~iET~~d~~E~~~a~~~~ 325 (591)
|.++|+|.+.+|-..+.+|++...+.+
T Consensus 164 Y~eAGAD~ifi~~~~~~~~i~~~~~~~ 190 (238)
T PF13714_consen 164 YAEAGADMIFIPGLQSEEEIERIVKAV 190 (238)
T ss_dssp HHHTT-SEEEETTSSSHHHHHHHHHHH
T ss_pred HHHcCCCEEEeCCCCCHHHHHHHHHhc
Confidence 457999999999999999987776665
No 83
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=75.04 E-value=14 Score=36.64 Aligned_cols=55 Identities=16% Similarity=0.292 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHH-hcCCCceEEEEEecCCCcccCCCCHHHHHHHH
Q psy17603 187 SEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLR-EWPHQKAWLSFSCKDDKHISNGESFTQVARTC 261 (591)
Q Consensus 187 ~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~-~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~ 261 (591)
++.|+...+ +.|+|++-+ ||.-.--...++.++ -+++.|++.+. |.+...+.+.+
T Consensus 118 T~~E~~~A~--------~~Gad~vkl--FPa~~~G~~~ik~l~~~~p~ip~~atG----------GI~~~N~~~~l 173 (213)
T PRK06552 118 TVTEIVTAL--------EAGSEIVKL--FPGSTLGPSFIKAIKGPLPQVNVMVTG----------GVNLDNVKDWF 173 (213)
T ss_pred CHHHHHHHH--------HcCCCEEEE--CCcccCCHHHHHHHhhhCCCCEEEEEC----------CCCHHHHHHHH
Confidence 555555443 589999998 552210122233444 35667766544 77777777766
No 84
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=75.03 E-value=41 Score=34.57 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=21.9
Q ss_pred HHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceE
Q psy17603 200 QALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAW 237 (591)
Q Consensus 200 ~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~ 237 (591)
+.+.++|+|.+-+|-- .|....++++.+ .+.||+
T Consensus 100 rl~~eaGa~aVkiEgg---~~~~~~i~~l~~-~gIpV~ 133 (263)
T TIGR00222 100 RVMQETGANAVKLEGG---EWLVETVQMLTE-RGVPVV 133 (263)
T ss_pred HHHHHhCCeEEEEcCc---HhHHHHHHHHHH-CCCCEE
Confidence 3455699999999973 333333455544 478887
No 85
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=74.92 E-value=58 Score=34.81 Aligned_cols=55 Identities=7% Similarity=-0.064 Sum_probs=34.6
Q ss_pred CcceE--EecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCCCCHHHHHHH
Q psy17603 343 NIPLV--VYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHM 401 (591)
Q Consensus 343 ~~pl~--~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCgtgP~~i~~l 401 (591)
.+|++ +||.+...-+. + -+.++|+.++..++-..++|+++|=..--+.++...++
T Consensus 192 GlPlv~~~YpRG~~i~~~--~--d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v 248 (348)
T PRK09250 192 GLATVLWSYLRNSAFKKD--G--DYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAI 248 (348)
T ss_pred CCCEEEEecccCcccCCc--c--cccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHh
Confidence 37766 47765432111 1 11234666777777667999999999987666666554
No 86
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=74.92 E-value=9.2 Score=40.93 Aligned_cols=61 Identities=25% Similarity=0.401 Sum_probs=41.4
Q ss_pred CcceeEeeccCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccC-CHHHHHHHHHHHH-hcCC
Q psy17603 156 ARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIP-ASKEAQMLCRLLR-EWPH 233 (591)
Q Consensus 156 ~~~~~VagsiGP~ga~l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~-~~~Ea~aa~~a~~-~~~~ 233 (591)
+.+.+|++++||... ..++++.|+++|+|+|++-+-. +.......++.+| .+++
T Consensus 94 ~~~l~V~aavg~~~~------------------------~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~ 149 (352)
T PF00478_consen 94 KGRLLVAAAVGTRDD------------------------DFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPD 149 (352)
T ss_dssp TSCBCEEEEEESSTC------------------------HHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTT
T ss_pred cccceEEEEecCCHH------------------------HHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCC
Confidence 456899999999421 3578889999999999998643 3444455556665 5677
Q ss_pred CceEEEE
Q psy17603 234 QKAWLSF 240 (591)
Q Consensus 234 ~pv~vSf 240 (591)
.|+++--
T Consensus 150 ~~viaGN 156 (352)
T PF00478_consen 150 VPVIAGN 156 (352)
T ss_dssp SEEEEEE
T ss_pred ceEEecc
Confidence 7877433
No 87
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=74.91 E-value=1.3e+02 Score=34.66 Aligned_cols=85 Identities=8% Similarity=0.068 Sum_probs=55.5
Q ss_pred CCCccce-eecccccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHH
Q psy17603 302 SGEHILA-IETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWL 380 (591)
Q Consensus 302 aG~D~l~-iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~ 380 (591)
+|+|.+- +-...|...++.+++.+++.+..- ..-++|-. + + ..+++.+.+.++++.
T Consensus 108 ~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v-----------~~~i~~t~-~-p----------~~t~~~~~~~a~~l~ 164 (592)
T PRK09282 108 NGIDIFRIFDALNDVRNMEVAIKAAKKAGAHV-----------QGTISYTT-S-P----------VHTIEKYVELAKELE 164 (592)
T ss_pred CCCCEEEEEEecChHHHHHHHHHHHHHcCCEE-----------EEEEEecc-C-C----------CCCHHHHHHHHHHHH
Confidence 4777664 344567788888888888764110 00011111 1 1 124578888899999
Q ss_pred hcCCcEEeecCCC---CHHHHHHHHHHhhhcc
Q psy17603 381 DEGVALVGGCCRT---YAEDTLHMKHRLDDWV 409 (591)
Q Consensus 381 ~~Gv~~VGgcCgt---gP~~i~~l~~~l~~~~ 409 (591)
+.|++.|.+|=.. .|..+..+++.++...
T Consensus 165 ~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~ 196 (592)
T PRK09282 165 EMGCDSICIKDMAGLLTPYAAYELVKALKEEV 196 (592)
T ss_pred HcCCCEEEECCcCCCcCHHHHHHHHHHHHHhC
Confidence 9999998877433 6999999999987653
No 88
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=74.87 E-value=63 Score=34.55 Aligned_cols=130 Identities=14% Similarity=0.079 Sum_probs=71.7
Q ss_pred CCCHHHHH---HHHHHHHHHHHHcCCCEEEecc------------cCC-------------HHHHHHHHHHHHhcCCCce
Q psy17603 185 HVSEATMA---EWHRPRIQALVEAGADILAIET------------IPA-------------SKEAQMLCRLLREWPHQKA 236 (591)
Q Consensus 185 ~~~~e~l~---~~h~~~i~~l~~aGvD~i~~ET------------~~~-------------~~Ea~aa~~a~~~~~~~pv 236 (591)
.++.+++. +.|.+-++...++|.|.+-+-. ..+ .+-+..+++++|+..+.++
T Consensus 126 ~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~ 205 (353)
T cd02930 126 ELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDF 205 (353)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCc
Confidence 46666655 5566667777789999986643 111 2335567777776445555
Q ss_pred EEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCC---Cch----------hhHHHHHHHHhcCCceEEecCCC
Q psy17603 237 WLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCV---RPL----------MVSSLIEQLKTENIPLVVYPNSG 303 (591)
Q Consensus 237 ~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~---~p~----------~i~~~l~~l~~~~~~i~~l~~aG 303 (591)
.|.+-+........|.+++++++.+......+++.|-|-.. .+. ......+.+++.. .
T Consensus 206 ~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v---------~ 276 (353)
T cd02930 206 IIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV---------D 276 (353)
T ss_pred eEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC---------C
Confidence 55555543333345678887776654444445666655321 110 1223344444431 3
Q ss_pred CccceeecccccHHHHHHHH
Q psy17603 304 EHILAIETIPASKEAQMLCR 323 (591)
Q Consensus 304 ~D~l~iET~~d~~E~~~a~~ 323 (591)
+.++.-|-+.+..+++.+++
T Consensus 277 iPVi~~G~i~~~~~a~~~i~ 296 (353)
T cd02930 277 IPVIASNRINTPEVAERLLA 296 (353)
T ss_pred CCEEEcCCCCCHHHHHHHHH
Confidence 45566666777766666653
No 89
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=74.84 E-value=73 Score=35.37 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCCEEEecccC-CHHHHHHHHHHHH-hcCCCceEE
Q psy17603 195 HRPRIQALVEAGADILAIETIP-ASKEAQMLCRLLR-EWPHQKAWL 238 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET~~-~~~Ea~aa~~a~~-~~~~~pv~v 238 (591)
..++++.++++|+|+|.+-+-. +...+...++.++ .+++.|+++
T Consensus 225 ~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~ 270 (450)
T TIGR01302 225 DKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA 270 (450)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE
Confidence 3478889999999999998743 3334455556666 457888887
No 90
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=74.29 E-value=21 Score=36.48 Aligned_cols=70 Identities=16% Similarity=0.059 Sum_probs=42.3
Q ss_pred CcEEEee---cCCcHHHHHHHHhcccccCCCCCCCCCcHHHHHHHhhhc------CCCCeeEEEEcCCChhhHHHHHHHh
Q psy17603 485 VALVGGC---CRTYAEDTLHMKHRLDDWDDKHISNGESFTQVARTCYNM------NPDQLIAVGVNCVRPLMVSPLIEQL 555 (591)
Q Consensus 485 ~~~vgGC---cgttp~~i~~l~~~~~~~d~~~l~dG~~l~~~~~~~~~~------~~~~~~avGiNC~~p~~v~~~i~~l 555 (591)
+.+|.|. ..|.+++++..++.++ -+-.+-+|.+.+.+-+++... ..-..++.--|=+.++.+.++++..
T Consensus 175 aviVtG~~TG~~~~~~~l~~vr~~~~--~PVlvGSGvt~~Ni~~~l~~ADG~IVGS~~K~~G~~~n~VD~~Rv~~fm~~v 252 (254)
T PF03437_consen 175 AVIVTGKATGEPPDPEKLKRVREAVP--VPVLVGSGVTPENIAEYLSYADGAIVGSYFKKDGKWENPVDPERVRRFMEAV 252 (254)
T ss_pred EEEECCcccCCCCCHHHHHHHHhcCC--CCEEEecCCCHHHHHHHHHhCCEEEEeeeeeeCCEeCCcCCHHHHHHHHHHh
Confidence 4555554 3678888998888876 345566777776666665310 0001122223557788888888776
Q ss_pred h
Q psy17603 556 K 556 (591)
Q Consensus 556 ~ 556 (591)
+
T Consensus 253 ~ 253 (254)
T PF03437_consen 253 K 253 (254)
T ss_pred h
Confidence 4
No 91
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=73.02 E-value=82 Score=33.29 Aligned_cols=139 Identities=17% Similarity=0.112 Sum_probs=73.6
Q ss_pred cCC-CEEEecccCCHHHHHH-HHHHHHhc-CCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCCchh
Q psy17603 205 AGA-DILAIETIPASKEAQM-LCRLLREW-PHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLM 281 (591)
Q Consensus 205 aGv-D~i~~ET~~~~~Ea~a-a~~a~~~~-~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~ 281 (591)
-|+ |+..+|-+..-.=... -.+.+... .+.|+.+++.- .+.+.+.++++.+ ...++++|-+||..|..
T Consensus 23 ~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~g------~~p~~~~~aA~~~---~~~g~d~IDlN~GCP~~ 93 (318)
T TIGR00742 23 LSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLGG------SDPNDLAKCAKIA---EKRGYDEINLNVGCPSD 93 (318)
T ss_pred hCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEcc------CCHHHHHHHHHHH---HhCCCCEEEEECCCCHH
Confidence 476 8999998765311100 00122211 25687777721 1223344555544 23568999999977653
Q ss_pred hHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCC
Q psy17603 282 VSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNA 361 (591)
Q Consensus 282 i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g 361 (591)
.. .+. ..|..+ +.+.+.+...++++++.. +.||.|....|. +.
T Consensus 94 ~v-----~~~---------g~Gs~L-----l~~p~~~~~iv~av~~~~-------------~~PVsvKiR~g~--~~--- 136 (318)
T TIGR00742 94 RV-----QNG---------NFGACL-----MGNADLVADCVKAMQEAV-------------NIPVTVKHRIGI--DP--- 136 (318)
T ss_pred Hh-----CCC---------CeehHh-----hcCHHHHHHHHHHHHHHh-------------CCCeEEEEecCC--CC---
Confidence 11 011 023222 235555666666666542 357766544332 11
Q ss_pred eecCCCChHHHHHHHHHHHhcCCcEEeecCCC
Q psy17603 362 RWIDRDLCEPVDKYVTDWLDEGVALVGGCCRT 393 (591)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCgt 393 (591)
..+.+...++++.+.+.|++.|-+=++|
T Consensus 137 ----~~~~~~~~~~~~~l~~~G~~~itvHgRt 164 (318)
T TIGR00742 137 ----LDSYEFLCDFVEIVSGKGCQNFIVHARK 164 (318)
T ss_pred ----cchHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 0112345566777778999988777765
No 92
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=72.89 E-value=1.1e+02 Score=31.80 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=33.2
Q ss_pred HHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHH
Q psy17603 198 RIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVART 260 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~ 260 (591)
.++.+.+.|+|++-++...++.|++.. + +....+.+-+.+...+..|+ .+++.+.
T Consensus 235 ~~~~l~~~~~d~~~~d~~~dl~~~~~~------~-g~~~~i~G~id~~~~l~~gt-~eei~~~ 289 (330)
T cd03465 235 ILELMADLGADVFSIDVTVDLAEAKKK------V-GDKACLMGNLDPIDVLLNGS-PEEIKEE 289 (330)
T ss_pred HHHHHHHhCCCeEeecccCCHHHHHHH------h-CCceEEEeCcChHHhhcCCC-HHHHHHH
Confidence 345677889999999977777765432 2 33455666666553455553 2444433
No 93
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=72.63 E-value=92 Score=32.57 Aligned_cols=82 Identities=7% Similarity=0.029 Sum_probs=51.6
Q ss_pred cchhHHHHHHHHHcCCcEEEeecCCcHHHHHHHHhcccccCC--CCCCCC----CcHHHHHHHhhhcCCCCeeEEEEcC-
Q psy17603 470 CEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWDD--KHISNG----ESFTQVARTCYNMNPDQLIAVGVNC- 542 (591)
Q Consensus 470 ~e~~a~~~~~~~~~G~~~vgGCcgttp~~i~~l~~~~~~~d~--~~l~dG----~~l~~~~~~~~~~~~~~~~avGiNC- 542 (591)
.++--+.++.+.++|++.|==-..+++++|+.+.+.++ ++- ..+..| .+++++.++ ..+...+|..|
T Consensus 165 ~deAI~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~-~Pl~~n~~~~~~~p~~s~~~L~~l-----Gv~~v~~~~~~~ 238 (292)
T PRK11320 165 LDAAIERAQAYVEAGADMIFPEAMTELEMYRRFADAVK-VPILANITEFGATPLFTTEELASA-----GVAMVLYPLSAF 238 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhcC-CCEEEEeccCCCCCCCCHHHHHHc-----CCcEEEEChHHH
Confidence 45556667888999998887445788999999988775 211 122223 245554433 34567777777
Q ss_pred -CChhhHHHHHHHhhh
Q psy17603 543 -VRPLMVSPLIEQLKT 557 (591)
Q Consensus 543 -~~p~~v~~~i~~l~~ 557 (591)
.....+.+.++.+..
T Consensus 239 ~aa~~a~~~~~~~l~~ 254 (292)
T PRK11320 239 RAMNKAAENVYEAIRR 254 (292)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 455556666666665
No 94
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=71.94 E-value=1.9e+02 Score=33.40 Aligned_cols=84 Identities=10% Similarity=0.082 Sum_probs=54.7
Q ss_pred CCCccce-eecccccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHH
Q psy17603 302 SGEHILA-IETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWL 380 (591)
Q Consensus 302 aG~D~l~-iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~ 380 (591)
.|+|.+- +-.+.|+..++.+++.+|+.+... ..-++|-.+ + ..+++.+.+.++++.
T Consensus 109 ~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~-----------~~~i~yt~~-----p-------~~~~~~~~~~a~~l~ 165 (593)
T PRK14040 109 NGMDVFRVFDAMNDPRNLETALKAVRKVGAHA-----------QGTLSYTTS-----P-------VHTLQTWVDLAKQLE 165 (593)
T ss_pred cCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeE-----------EEEEEEeeC-----C-------ccCHHHHHHHHHHHH
Confidence 4677663 344566777888899988764110 001222111 0 113467888888889
Q ss_pred hcCCcEEeecCC---CCHHHHHHHHHHhhhc
Q psy17603 381 DEGVALVGGCCR---TYAEDTLHMKHRLDDW 408 (591)
Q Consensus 381 ~~Gv~~VGgcCg---tgP~~i~~l~~~l~~~ 408 (591)
++|++.|.+|=. ..|..+..+++.++..
T Consensus 166 ~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~ 196 (593)
T PRK14040 166 DMGVDSLCIKDMAGLLKPYAAYELVSRIKKR 196 (593)
T ss_pred HcCCCEEEECCCCCCcCHHHHHHHHHHHHHh
Confidence 999999877643 3699999999998765
No 95
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=71.82 E-value=26 Score=34.12 Aligned_cols=66 Identities=11% Similarity=0.115 Sum_probs=40.0
Q ss_pred HHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEec
Q psy17603 198 RIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVN 275 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvN 275 (591)
+++.+.++|+|++.+=-.........+++.++++ +.++++.+.- ..++++++.... ..+++.|+++
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~-g~~~~~~~~~-------~~t~~~~~~~~~----~~g~d~v~~~ 133 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKH-GKEVQVDLIN-------VKDKVKRAKELK----ELGADYIGVH 133 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHc-CCEEEEEecC-------CCChHHHHHHHH----HcCCCEEEEc
Confidence 5667889999999765544433445667777774 7888875411 133444544333 1356677775
No 96
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=71.61 E-value=99 Score=32.17 Aligned_cols=48 Identities=8% Similarity=-0.037 Sum_probs=27.2
Q ss_pred ccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhc--CCcEE
Q psy17603 314 ASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDE--GVALV 387 (591)
Q Consensus 314 d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~--Gv~~V 387 (591)
|.+.+...++++++.- ++||++....+ .+.+.+.+.++.+.+. |++.|
T Consensus 141 ~~~~~~~i~~~v~~~~-------------~iPv~vKl~p~-------------~~~~~~~~~a~~l~~~~~G~~gi 190 (294)
T cd04741 141 DFDATLEYLTAVKAAY-------------SIPVGVKTPPY-------------TDPAQFDTLAEALNAFACPISFI 190 (294)
T ss_pred CHHHHHHHHHHHHHhc-------------CCCEEEEeCCC-------------CCHHHHHHHHHHHhccccCCcEE
Confidence 4556666677776542 47877754322 1224566666666666 66543
No 97
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=71.46 E-value=1.4e+02 Score=33.63 Aligned_cols=85 Identities=8% Similarity=0.105 Sum_probs=57.7
Q ss_pred CCCccc-eeecccccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHH
Q psy17603 302 SGEHIL-AIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWL 380 (591)
Q Consensus 302 aG~D~l-~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~ 380 (591)
.|+|++ ++-.+.|+..++.+++++++.+... ..-++|..+ ...+++.+.+.++++.
T Consensus 109 ~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~-----------~~~i~yt~s------------p~~t~e~~~~~a~~l~ 165 (499)
T PRK12330 109 NGMDVFRVFDALNDPRNLEHAMKAVKKVGKHA-----------QGTICYTVS------------PIHTVEGFVEQAKRLL 165 (499)
T ss_pred cCCCEEEEEecCChHHHHHHHHHHHHHhCCeE-----------EEEEEEecC------------CCCCHHHHHHHHHHHH
Confidence 478877 4455777888888999988764210 012222111 1124678899999999
Q ss_pred hcCCcEEeecCCC---CHHHHHHHHHHhhhcc
Q psy17603 381 DEGVALVGGCCRT---YAEDTLHMKHRLDDWV 409 (591)
Q Consensus 381 ~~Gv~~VGgcCgt---gP~~i~~l~~~l~~~~ 409 (591)
++|++.|.++=.. .|..+..+++.|+...
T Consensus 166 ~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~ 197 (499)
T PRK12330 166 DMGADSICIKDMAALLKPQPAYDIVKGIKEAC 197 (499)
T ss_pred HcCCCEEEeCCCccCCCHHHHHHHHHHHHHhC
Confidence 9999888665333 6999999999987753
No 98
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=71.39 E-value=51 Score=35.83 Aligned_cols=86 Identities=8% Similarity=0.087 Sum_probs=60.4
Q ss_pred CCCccc-eeecccccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHH
Q psy17603 302 SGEHIL-AIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWL 380 (591)
Q Consensus 302 aG~D~l-~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~ 380 (591)
.|.|+| +|-.+.|...++.|++++|+.+... .-.++|-.+ +-.+.+.+.+.++++.
T Consensus 110 nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~-----------q~~i~YT~s------------PvHt~e~yv~~akel~ 166 (472)
T COG5016 110 NGIDVFRIFDALNDVRNLKTAIKAAKKHGAHV-----------QGTISYTTS------------PVHTLEYYVELAKELL 166 (472)
T ss_pred cCCcEEEechhccchhHHHHHHHHHHhcCcee-----------EEEEEeccC------------CcccHHHHHHHHHHHH
Confidence 588888 7788999999999999999875210 012222111 1123467888899999
Q ss_pred hcCCcEEeec---CCCCHHHHHHHHHHhhhccc
Q psy17603 381 DEGVALVGGC---CRTYAEDTLHMKHRLDDWVS 410 (591)
Q Consensus 381 ~~Gv~~VGgc---CgtgP~~i~~l~~~l~~~~~ 410 (591)
++|++.|-.= --.+|....++++.+++..+
T Consensus 167 ~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~ 199 (472)
T COG5016 167 EMGVDSICIKDMAGLLTPYEAYELVKAIKKELP 199 (472)
T ss_pred HcCCCEEEeecccccCChHHHHHHHHHHHHhcC
Confidence 9999887432 12479999999999988654
No 99
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=71.38 E-value=98 Score=30.71 Aligned_cols=88 Identities=13% Similarity=0.101 Sum_probs=51.1
Q ss_pred hHHHHHHHHHcCCcEEE--eecCCcHH-HHHHHHhcccccCCCCCCCCCcHHHHHHHhhhcCCCCeeEEEEcCCChhh--
Q psy17603 473 VDKYVTDWLDEGVALVG--GCCRTYAE-DTLHMKHRLDDWDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLM-- 547 (591)
Q Consensus 473 ~a~~~~~~~~~G~~~vg--GCcgttp~-~i~~l~~~~~~~d~~~l~dG~~l~~~~~~~~~~~~~~~~avGiNC~~p~~-- 547 (591)
+.+.+.++.+.|+.+|+ +++.+-|. .+..+-+..+.-.--.+.|=.+++|.....+ -.++.||---+++..
T Consensus 87 tlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~----~G~D~IGTTLsGYT~~~ 162 (229)
T COG3010 87 TLKEVDALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHK----LGFDIIGTTLSGYTGYT 162 (229)
T ss_pred cHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHH----cCCcEEecccccccCCC
Confidence 56677788889998888 88887776 5555444432222334455566766665432 245666665544332
Q ss_pred ------HHHHHHHhhhcCCcEEE
Q psy17603 548 ------VSPLIEQLKTENIPLVV 564 (591)
Q Consensus 548 ------v~~~i~~l~~~~~pl~v 564 (591)
=.++++.+.+.+.++++
T Consensus 163 ~~~~~pDf~lvk~l~~~~~~vIA 185 (229)
T COG3010 163 EKPTEPDFQLVKQLSDAGCRVIA 185 (229)
T ss_pred CCCCCCcHHHHHHHHhCCCeEEe
Confidence 23455555555555543
No 100
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=71.36 E-value=6.8 Score=40.76 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEe
Q psy17603 195 HRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSC 242 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~ 242 (591)
--+|.++|.++|+|++.+|...+.+|++.+.+.+ +.|+++.+..
T Consensus 163 AI~Ra~ay~~AGAD~vfi~g~~~~e~i~~~~~~i----~~Pl~~n~~~ 206 (285)
T TIGR02317 163 AIERAKAYVEAGADMIFPEALTSLEEFRQFAKAV----KVPLLANMTE 206 (285)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhc----CCCEEEEecc
Confidence 4568889999999999999999998877665543 3788877744
No 101
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=71.22 E-value=1.9e+02 Score=32.87 Aligned_cols=171 Identities=9% Similarity=0.008 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEec-ccCCHHHHHHHHHHHHhcCCCceEEEEE-ecCCCcccCCCCHHHHHHHHH
Q psy17603 185 HVSEATMAEWHRPRIQALVEAGADILAIE-TIPASKEAQMLCRLLREWPHQKAWLSFS-CKDDKHISNGESFTQVARTCY 262 (591)
Q Consensus 185 ~~~~e~l~~~h~~~i~~l~~aGvD~i~~E-T~~~~~Ea~aa~~a~~~~~~~pv~vSf~-~~~~g~l~~G~~~~~~~~~~~ 262 (591)
.++.++-.++.+ .|.+.|+|.|-+- -+.+..+..++.++++.-...+-+++|. ....+.. .+....++.+.
T Consensus 19 ~~s~eeKl~Ia~----~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~---~~~d~~~ea~~ 91 (526)
T TIGR00977 19 SFSLEDKIRIAE----RLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKK---VEEDKMLQALI 91 (526)
T ss_pred CCCHHHHHHHHH----HHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCC---CchHHHHHHHh
Confidence 467888887776 5778999999763 2335566555555554211224445553 2211111 12233444443
Q ss_pred hhCCCCeEEEEe-cCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhccccccccccccCC
Q psy17603 263 NMNPDQLIAVGV-NCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKT 341 (591)
Q Consensus 263 ~~~~~~~~aiGv-NC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~ 341 (591)
+ .+...|.+ +.+++.++...++. ..+ ..++.++.+++.+|+.+
T Consensus 92 ~---~~~~~v~i~~~~Sd~h~~~~l~~---s~e------------------e~l~~~~~~v~~ak~~g------------ 135 (526)
T TIGR00977 92 K---AETPVVTIFGKSWDLHVLEALQT---TLE------------------ENLAMIYDTVAYLKRQG------------ 135 (526)
T ss_pred c---CCCCEEEEEeCCCHHHHHHHhCC---CHH------------------HHHHHHHHHHHHHHHcC------------
Confidence 2 22233333 45666665544331 100 01233455666777653
Q ss_pred CCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecC---CCCHHHHHHHHHHhhhc
Q psy17603 342 ENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCC---RTYAEDTLHMKHRLDDW 408 (591)
Q Consensus 342 ~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcC---gtgP~~i~~l~~~l~~~ 408 (591)
..+...+. ..||. +..+++.+.+.++.+.+.|++.|-+|= ...|..+..+++.+++.
T Consensus 136 --~~V~~~~e--~f~D~------~r~~~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~ 195 (526)
T TIGR00977 136 --DEVIYDAE--HFFDG------YKANPEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRS 195 (526)
T ss_pred --CeEEEEee--eeeec------ccCCHHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHh
Confidence 11211110 00121 234678888888888899999887763 23799999999988765
No 102
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=71.21 E-value=60 Score=31.95 Aligned_cols=68 Identities=19% Similarity=0.191 Sum_probs=38.6
Q ss_pred HcCCCEEEecccCCHHHH---HHHHHHHHhc-CCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCCc
Q psy17603 204 EAGADILAIETIPASKEA---QMLCRLLREW-PHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRP 279 (591)
Q Consensus 204 ~aGvD~i~~ET~~~~~Ea---~aa~~a~~~~-~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p 279 (591)
+-|+|++..|-+....-. +.-....... .+.|+++++... +-+.+.++++.+ ...+.++|-+||..|
T Consensus 21 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~------~~~~~~~aa~~~---~~aG~d~ieln~g~p 91 (231)
T cd02801 21 RYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGS------DPETLAEAAKIV---EELGADGIDLNMGCP 91 (231)
T ss_pred HHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCC------CHHHHHHHHHHH---HhcCCCEEEEeCCCC
Confidence 347999999977643211 1111122111 357888888422 112344555544 346889999999877
Q ss_pred h
Q psy17603 280 L 280 (591)
Q Consensus 280 ~ 280 (591)
.
T Consensus 92 ~ 92 (231)
T cd02801 92 S 92 (231)
T ss_pred H
Confidence 4
No 103
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=71.14 E-value=9.2 Score=39.97 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEec
Q psy17603 195 HRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCK 243 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~ 243 (591)
--+|.++|.++|+|++.+|...+..|++.+.+.+ +.|+++++...
T Consensus 167 aI~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~----~~P~~~nv~~~ 211 (294)
T TIGR02319 167 AIRRSREYVAAGADCIFLEAMLDVEEMKRVRDEI----DAPLLANMVEG 211 (294)
T ss_pred HHHHHHHHHHhCCCEEEecCCCCHHHHHHHHHhc----CCCeeEEEEec
Confidence 4567889999999999999999999977776653 35877766543
No 104
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=71.10 E-value=8.6 Score=39.99 Aligned_cols=44 Identities=27% Similarity=0.362 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCCEEEecc-cCCHHHHHHHHHHHH-hcCCCceEE
Q psy17603 195 HRPRIQALVEAGADILAIET-IPASKEAQMLCRLLR-EWPHQKAWL 238 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET-~~~~~Ea~aa~~a~~-~~~~~pv~v 238 (591)
--+|+++|.++|+|.+.++. ..+..|++.+.+.++ .+|+.|+.+
T Consensus 171 Ai~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~ 216 (285)
T TIGR02320 171 ALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVI 216 (285)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEE
Confidence 44678899999999999996 688899888888776 356778753
No 105
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=70.78 E-value=1.9e+02 Score=32.69 Aligned_cols=42 Identities=12% Similarity=0.002 Sum_probs=32.9
Q ss_pred CChHHHHHHHHHHHhcCCcEEeecCCC---CHHHHHHHHHHhhhc
Q psy17603 367 DLCEPVDKYVTDWLDEGVALVGGCCRT---YAEDTLHMKHRLDDW 408 (591)
Q Consensus 367 ~~~~~~~~~~~~~~~~Gv~~VGgcCgt---gP~~i~~l~~~l~~~ 408 (591)
.+++.+.++++.+.+.|++.|.+|=.+ .|..+..+++.++..
T Consensus 236 td~efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~ 280 (503)
T PLN03228 236 SDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKAN 280 (503)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 345677888888889999998776433 689999999888764
No 106
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=70.73 E-value=77 Score=33.39 Aligned_cols=63 Identities=17% Similarity=0.172 Sum_probs=35.8
Q ss_pred CCCEEEecccCCHHH---HHHHHHHHHh-----c--CCCceEEEEEecCCCcccCCCCH---HHHHHHHHhhCCCCeEEE
Q psy17603 206 GADILAIETIPASKE---AQMLCRLLRE-----W--PHQKAWLSFSCKDDKHISNGESF---TQVARTCYNMNPDQLIAV 272 (591)
Q Consensus 206 GvD~i~~ET~~~~~E---a~aa~~a~~~-----~--~~~pv~vSf~~~~~g~l~~G~~~---~~~~~~~~~~~~~~~~ai 272 (591)
|+|+..+|-++...- .+.......+ + .+.|+.+++ -|.+. .+++..+. ..+.++|
T Consensus 25 ~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl---------~g~~p~~~~~aA~~~~---~~g~d~I 92 (312)
T PRK10550 25 DYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQL---------LGQYPQWLAENAARAV---ELGSWGV 92 (312)
T ss_pred CCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEe---------ccCCHHHHHHHHHHHH---HcCCCEE
Confidence 489999999875211 1111111111 1 246888777 24444 44444442 3578899
Q ss_pred EecCCCch
Q psy17603 273 GVNCVRPL 280 (591)
Q Consensus 273 GvNC~~p~ 280 (591)
-+||..|.
T Consensus 93 diN~GCP~ 100 (312)
T PRK10550 93 DLNCGCPS 100 (312)
T ss_pred EEeCCCCc
Confidence 99997765
No 107
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=70.61 E-value=1.8e+02 Score=32.35 Aligned_cols=42 Identities=10% Similarity=-0.010 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHHHhcCCcEEeecCCC---CHHHHHHHHHHhhhcc
Q psy17603 368 LCEPVDKYVTDWLDEGVALVGGCCRT---YAEDTLHMKHRLDDWV 409 (591)
Q Consensus 368 ~~~~~~~~~~~~~~~Gv~~VGgcCgt---gP~~i~~l~~~l~~~~ 409 (591)
+++.+.+.++++.+.|++.|.++=.+ .|..+..+++.++...
T Consensus 152 ~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~ 196 (448)
T PRK12331 152 TIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAV 196 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhc
Confidence 45778888899999999998876444 5999999999987753
No 108
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=70.36 E-value=1.4e+02 Score=31.65 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHHHhcCC---cEEeecCC----CCHHHHHHHHHHhhh
Q psy17603 368 LCEPVDKYVTDWLDEGV---ALVGGCCR----TYAEDTLHMKHRLDD 407 (591)
Q Consensus 368 ~~~~~~~~~~~~~~~Gv---~~VGgcCg----tgP~~i~~l~~~l~~ 407 (591)
+++++.+.++++++.+. .++..-|+ |.++.|+++++..+.
T Consensus 297 t~e~i~~~~~~~i~~~~~~gfIl~~Gc~i~~~tp~eNi~a~v~a~~~ 343 (346)
T PRK00115 297 PPEAIEEEVRAILDGGGGPGHIFNLGHGILPETPPENVKALVEAVHE 343 (346)
T ss_pred CHHHHHHHHHHHHHHhCCCCeeeecCCcCCCCcCHHHHHHHHHHHHH
Confidence 47888888887776432 37766675 456888888887654
No 109
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=69.92 E-value=74 Score=33.49 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=30.0
Q ss_pred ecCCCChHHHHHHHHHHHhc-----CCcEEeecCC----CCHHHHHHHHHHhhh
Q psy17603 363 WIDRDLCEPVDKYVTDWLDE-----GVALVGGCCR----TYAEDTLHMKHRLDD 407 (591)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~-----Gv~~VGgcCg----tgP~~i~~l~~~l~~ 407 (591)
++. .+++++.+.++++++. |-.++|.-|+ |.++.++++.+..++
T Consensus 290 ~l~-gt~eei~~~v~~~i~~~~~~~~gfIl~~gc~ip~~~p~eni~a~~~a~~e 342 (343)
T PF01208_consen 290 LLF-GTPEEIEEEVKRLIEEGLAGGGGFILSPGCGIPPDTPPENIKAMVEAVKE 342 (343)
T ss_dssp GGG-S-HHHHHHHHHHHHHHTHCTSSSEEBEBSS---TTS-HHHHHHHHHHHHH
T ss_pred ccc-CCHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCCCCcCHHHHHHHHHHHHh
Confidence 344 6788888888888773 3558999995 456788888876643
No 110
>PRK15452 putative protease; Provisional
Probab=69.85 E-value=1.1e+02 Score=33.93 Aligned_cols=44 Identities=9% Similarity=0.015 Sum_probs=31.6
Q ss_pred HHHHHHHHcCCCEEEecc----------cCCHHHHHHHHHHHHhcCCCceEEEEE
Q psy17603 197 PRIQALVEAGADILAIET----------IPASKEAQMLCRLLREWPHQKAWLSFS 241 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET----------~~~~~Ea~aa~~a~~~~~~~pv~vSf~ 241 (591)
+++++.+++|||.+.+.. -.+..+.+.+++.+++ .++++++++.
T Consensus 14 e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~-~g~kvyvt~n 67 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHA-LGKKFYVVVN 67 (443)
T ss_pred HHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHH-cCCEEEEEec
Confidence 566678899999998821 2234677777877776 4788888773
No 111
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=69.82 E-value=43 Score=32.99 Aligned_cols=42 Identities=7% Similarity=-0.133 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHHhcCCcEEeecCCC----------------CHHHHHHHHHHhhhc
Q psy17603 367 DLCEPVDKYVTDWLDEGVALVGGCCRT----------------YAEDTLHMKHRLDDW 408 (591)
Q Consensus 367 ~~~~~~~~~~~~~~~~Gv~~VGgcCgt----------------gP~~i~~l~~~l~~~ 408 (591)
.+++++.+.++.+.+.|++.|=+|||. .|+.+.++++.+++.
T Consensus 64 ~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~ 121 (231)
T cd02801 64 SDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA 121 (231)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh
Confidence 356789998888888899999999986 555666666666543
No 112
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=69.78 E-value=65 Score=32.47 Aligned_cols=106 Identities=8% Similarity=-0.024 Sum_probs=58.5
Q ss_pred CCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecc
Q psy17603 233 HQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETI 312 (591)
Q Consensus 233 ~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~ 312 (591)
..|+++++. |.++++.++.+... ...+++|-+||.-|..-. .+. .+|..+ +
T Consensus 67 ~~~vivnv~---------~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v------~~~--------g~G~~L-----l 117 (231)
T TIGR00736 67 RALVSVNVR---------FVDLEEAYDVLLTI-AEHADIIEINAHCRQPEI------TEI--------GIGQEL-----L 117 (231)
T ss_pred cCCEEEEEe---------cCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHH------cCC--------CCchhh-----c
Confidence 458888872 33445544443221 236889999997775310 000 122222 2
Q ss_pred cccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCC
Q psy17603 313 PASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCR 392 (591)
Q Consensus 313 ~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCg 392 (591)
.|.+-+...++++++. ++||.+....+.. .....+.++.+.+.|++.|-+-|.
T Consensus 118 ~dp~~l~~iv~av~~~--------------~~PVsvKiR~~~~-------------~~~~~~~a~~l~~aGad~i~Vd~~ 170 (231)
T TIGR00736 118 KNKELLKEFLTKMKEL--------------NKPIFVKIRGNCI-------------PLDELIDALNLVDDGFDGIHVDAM 170 (231)
T ss_pred CCHHHHHHHHHHHHcC--------------CCcEEEEeCCCCC-------------cchHHHHHHHHHHcCCCEEEEeeC
Confidence 3555556666666632 3677775443310 123345556667899999988877
Q ss_pred CC
Q psy17603 393 TY 394 (591)
Q Consensus 393 tg 394 (591)
..
T Consensus 171 ~~ 172 (231)
T TIGR00736 171 YP 172 (231)
T ss_pred CC
Confidence 63
No 113
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=69.12 E-value=67 Score=33.95 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhcCCcEEeec
Q psy17603 370 EPVDKYVTDWLDEGVALVGGC 390 (591)
Q Consensus 370 ~~~~~~~~~~~~~Gv~~VGgc 390 (591)
+++.+.++.+.+.|++.|=..
T Consensus 216 ~~~~~ia~~l~~aGad~I~~~ 236 (327)
T cd04738 216 EELEDIADVALEHGVDGIIAT 236 (327)
T ss_pred HHHHHHHHHHHHcCCcEEEEE
Confidence 356667777778899877543
No 114
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=68.90 E-value=1.5e+02 Score=30.72 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHHHHHH-cCCCEEEecc-cC-----CHHHHHHHHHHHHhc-CC-CceEEEEEecCCCcccCCCCHH
Q psy17603 185 HVSEATMAEWHRPRIQALVE-AGADILAIET-IP-----ASKEAQMLCRLLREW-PH-QKAWLSFSCKDDKHISNGESFT 255 (591)
Q Consensus 185 ~~~~e~l~~~h~~~i~~l~~-aGvD~i~~ET-~~-----~~~Ea~aa~~a~~~~-~~-~pv~vSf~~~~~g~l~~G~~~~ 255 (591)
.++.+.+ +..++.+++ +|||.|++.- .+ +.+|-+.+++.+.+. .+ .|+++.. ...+..
T Consensus 20 ~iD~~~~----~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagv---------g~~~t~ 86 (293)
T PRK04147 20 QIDEQGL----RRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQV---------GSVNTA 86 (293)
T ss_pred CcCHHHH----HHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecC---------CCCCHH
Confidence 4566654 455567888 9999886653 22 235656666655532 22 4666544 123456
Q ss_pred HHHHHHHhhCCCCeEEEEe
Q psy17603 256 QVARTCYNMNPDQLIAVGV 274 (591)
Q Consensus 256 ~~~~~~~~~~~~~~~aiGv 274 (591)
++++........+++++-+
T Consensus 87 ~ai~~a~~a~~~Gad~v~v 105 (293)
T PRK04147 87 EAQELAKYATELGYDAISA 105 (293)
T ss_pred HHHHHHHHHHHcCCCEEEE
Confidence 6666554333445555543
No 115
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=68.62 E-value=1.5e+02 Score=30.77 Aligned_cols=73 Identities=10% Similarity=0.111 Sum_probs=42.6
Q ss_pred HHHHHHHHHHcC-CCEEEecc-c-----------CCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHH
Q psy17603 195 HRPRIQALVEAG-ADILAIET-I-----------PASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTC 261 (591)
Q Consensus 195 h~~~i~~l~~aG-vD~i~~ET-~-----------~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~ 261 (591)
|.+-++.+.++| +|.|-++- . .+.+....+++++++..+.|+++-++.. -+.+.+.++.+
T Consensus 106 ~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~-------~~~~~~~a~~l 178 (301)
T PRK07259 106 YAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPN-------VTDIVEIAKAA 178 (301)
T ss_pred HHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCC-------chhHHHHHHHH
Confidence 444555667788 99997743 1 1234466777788765578888776421 12445555555
Q ss_pred HhhCCCCeEEEEe-cCC
Q psy17603 262 YNMNPDQLIAVGV-NCV 277 (591)
Q Consensus 262 ~~~~~~~~~aiGv-NC~ 277 (591)
.+ .++++|-+ |++
T Consensus 179 ~~---~G~d~i~~~nt~ 192 (301)
T PRK07259 179 EE---AGADGLSLINTL 192 (301)
T ss_pred HH---cCCCEEEEEccc
Confidence 32 45665543 543
No 116
>PRK15063 isocitrate lyase; Provisional
Probab=68.57 E-value=6.5 Score=42.94 Aligned_cols=35 Identities=26% Similarity=0.235 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCCCEEEecc-cCCHHHHHHHHHHHHh
Q psy17603 195 HRPRIQALVEAGADILAIET-IPASKEAQMLCRLLRE 230 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET-~~~~~Ea~aa~~a~~~ 230 (591)
--+|..+|.+ |+|+|++|| .|+++|++.+.+.++.
T Consensus 267 AI~Ra~AYa~-GAD~iw~Et~~~d~ee~~~fa~~v~~ 302 (428)
T PRK15063 267 AIARGLAYAP-YADLIWCETSTPDLEEARRFAEAIHA 302 (428)
T ss_pred HHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHhhcc
Confidence 3457778888 999999998 8999999999988874
No 117
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=68.27 E-value=71 Score=33.80 Aligned_cols=129 Identities=14% Similarity=0.205 Sum_probs=72.6
Q ss_pred CCCCHHHHH---HHHHHHHHHHHHcCCCEEEeccc------------CC-------------HHHHHHHHHHHHhcC--C
Q psy17603 184 EHVSEATMA---EWHRPRIQALVEAGADILAIETI------------PA-------------SKEAQMLCRLLREWP--H 233 (591)
Q Consensus 184 ~~~~~e~l~---~~h~~~i~~l~~aGvD~i~~ET~------------~~-------------~~Ea~aa~~a~~~~~--~ 233 (591)
..++.+++. +.|.+-++.+.++|.|.+-+..- .+ .+.+..+++++|+.. +
T Consensus 142 ~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d 221 (336)
T cd02932 142 RELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPED 221 (336)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCC
Confidence 457776665 55777777778899999977741 11 123466777777543 4
Q ss_pred CceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEec---CCC-------chhhHHHHHHHHhcCCceEEecCCC
Q psy17603 234 QKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVN---CVR-------PLMVSSLIEQLKTENIPLVVYPNSG 303 (591)
Q Consensus 234 ~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvN---C~~-------p~~i~~~l~~l~~~~~~i~~l~~aG 303 (591)
.|+.|-++.. .....|.+++++++.+......+++.|-+- ++. +......++.+++.. .
T Consensus 222 ~~v~vri~~~--~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~---------~ 290 (336)
T cd02932 222 KPLFVRISAT--DWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEA---------G 290 (336)
T ss_pred ceEEEEEccc--ccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhC---------C
Confidence 5666655432 223456677777665543333445544431 111 112234445554431 3
Q ss_pred CccceeecccccHHHHHHHH
Q psy17603 304 EHILAIETIPASKEAQMLCR 323 (591)
Q Consensus 304 ~D~l~iET~~d~~E~~~a~~ 323 (591)
+.++..+-+.+..+++.++.
T Consensus 291 iPVi~~G~i~t~~~a~~~l~ 310 (336)
T cd02932 291 IPVIAVGLITDPEQAEAILE 310 (336)
T ss_pred CCEEEeCCCCCHHHHHHHHH
Confidence 56666777777777777654
No 118
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=68.03 E-value=1.8e+02 Score=31.26 Aligned_cols=42 Identities=10% Similarity=-0.100 Sum_probs=34.1
Q ss_pred CChHHHHHHHHHHHhcCCcEEeecCCC---CHHHHHHHHHHhhhc
Q psy17603 367 DLCEPVDKYVTDWLDEGVALVGGCCRT---YAEDTLHMKHRLDDW 408 (591)
Q Consensus 367 ~~~~~~~~~~~~~~~~Gv~~VGgcCgt---gP~~i~~l~~~l~~~ 408 (591)
.+++.+.+.++++.+.|++.|.+|=.+ .|..+..+++.+++.
T Consensus 194 ~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~ 238 (347)
T PLN02746 194 VPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAV 238 (347)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHh
Confidence 357889999999999999998876443 589999999888664
No 119
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=67.66 E-value=1.5e+02 Score=30.35 Aligned_cols=42 Identities=12% Similarity=-0.115 Sum_probs=33.3
Q ss_pred CChHHHHHHHHHHHhcCCcEEeecCC---CCHHHHHHHHHHhhhc
Q psy17603 367 DLCEPVDKYVTDWLDEGVALVGGCCR---TYAEDTLHMKHRLDDW 408 (591)
Q Consensus 367 ~~~~~~~~~~~~~~~~Gv~~VGgcCg---tgP~~i~~l~~~l~~~ 408 (591)
.+++.+.+.++++.+.|++.|..|=. ..|+++..+++.++..
T Consensus 135 ~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~ 179 (266)
T cd07944 135 YSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSN 179 (266)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 45678889998888999988866533 3699999999988765
No 120
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=67.45 E-value=26 Score=38.24 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=41.4
Q ss_pred CcceeEeeccCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCEEEeccc-CCHHHHHHHHHHHH-hcCC
Q psy17603 156 ARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETI-PASKEAQMLCRLLR-EWPH 233 (591)
Q Consensus 156 ~~~~~VagsiGP~ga~l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~-~~~~Ea~aa~~a~~-~~~~ 233 (591)
+.+.+|++++|+. ++ ..++++.++++|+|+|++-+- ++.......++.+| .+|+
T Consensus 139 ~~~l~v~aavg~~-------------------~~-----~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~ 194 (404)
T PRK06843 139 NNKLRVGAAVSID-------------------ID-----TIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPN 194 (404)
T ss_pred hcCeEEEEEEeCC-------------------HH-----HHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCC
Confidence 3457889999872 11 346888999999999998753 33344555666666 4577
Q ss_pred CceEEEE
Q psy17603 234 QKAWLSF 240 (591)
Q Consensus 234 ~pv~vSf 240 (591)
.++++..
T Consensus 195 ~~vi~g~ 201 (404)
T PRK06843 195 LDLIAGN 201 (404)
T ss_pred CcEEEEe
Confidence 7766544
No 121
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=67.42 E-value=1.2e+02 Score=31.78 Aligned_cols=68 Identities=19% Similarity=0.304 Sum_probs=38.1
Q ss_pred HHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCC--HHHHHHHHHhhCCCCeEEEEecC
Q psy17603 199 IQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGES--FTQVARTCYNMNPDQLIAVGVNC 276 (591)
Q Consensus 199 i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~--~~~~~~~~~~~~~~~~~aiGvNC 276 (591)
++.+.+.|+|++.++.-.++.|++.. ++ ....+.+.+++.+.+..|++ +.+.++.+.+ .+...++..|
T Consensus 237 l~~~~~~g~d~~~~d~~~dl~e~~~~------~g-~~~~i~Gnidp~~~l~~gt~e~i~~~~~~~l~---~g~~Il~~Gc 306 (326)
T cd03307 237 LEYIAQCGFDGISVDEKVDVKTAKEI------VG-GRAALIGNVSPSQTLLNGTPEDVKAEARKCLE---DGVDILAPGC 306 (326)
T ss_pred HHHHHHcCCCeecccccCCHHHHHHH------cC-CceEEEeCCChHHHhcCCCHHHHHHHHHHHHH---ccCCEecCcC
Confidence 34566789999988887788775422 22 23455666665544555643 3333444432 1223455556
No 122
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=66.86 E-value=11 Score=38.00 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEE
Q psy17603 192 AEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSF 240 (591)
Q Consensus 192 ~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf 240 (591)
.+.--+|.++|.++|+|.+.++.+.+.+|++.+.+.+ +.|+.+..
T Consensus 154 ~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~----~~Pl~v~~ 198 (238)
T PF13714_consen 154 LDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAV----DGPLNVNP 198 (238)
T ss_dssp HHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHH----SSEEEEET
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhc----CCCEEEEc
Confidence 3445578999999999999999999999977766655 36755444
No 123
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=66.80 E-value=1.3e+02 Score=29.90 Aligned_cols=84 Identities=10% Similarity=0.099 Sum_probs=43.6
Q ss_pred HHHHHHHHHcCCCEEEecc-cCCH----HHHHHHHHHHHhcCCCceEEEEEec------CCC-cccCC-CCHHHHHHHHH
Q psy17603 196 RPRIQALVEAGADILAIET-IPAS----KEAQMLCRLLREWPHQKAWLSFSCK------DDK-HISNG-ESFTQVARTCY 262 (591)
Q Consensus 196 ~~~i~~l~~aGvD~i~~ET-~~~~----~Ea~aa~~a~~~~~~~pv~vSf~~~------~~g-~l~~G-~~~~~~~~~~~ 262 (591)
...++..++.||+++-+=- =.+. ..++.+..+.+++ +.|++|.-.++ -+| |+-.. .++.++.+.+
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~-~v~liINd~~dlA~~~~AdGVHlGq~D~~~~~ar~~~- 101 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKY-GVPLIINDRVDLALAVGADGVHLGQDDMPLAEARELL- 101 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHh-CCeEEecCcHHHHHhCCCCEEEcCCcccchHHHHHhc-
Confidence 4567778899999885532 2222 2344555555553 67877765432 122 33222 2344444433
Q ss_pred hhCCCCeEEEEecCCCchhhHHH
Q psy17603 263 NMNPDQLIAVGVNCVRPLMVSSL 285 (591)
Q Consensus 263 ~~~~~~~~aiGvNC~~p~~i~~~ 285 (591)
..-.-||+.|.+.+.+..+
T Consensus 102 ----~~~~iIG~S~h~~eea~~A 120 (211)
T COG0352 102 ----GPGLIIGLSTHDLEEALEA 120 (211)
T ss_pred ----CCCCEEEeecCCHHHHHHH
Confidence 1223577777665554443
No 124
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=66.44 E-value=37 Score=35.94 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEec
Q psy17603 195 HRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCK 243 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~ 243 (591)
--.|+..|.++|+|++= =|+|+.+.|.++-+.-++ .+.|.+.-+-|.
T Consensus 38 Tv~QI~~L~~aG~dIVR-vtv~~~e~A~A~~~Ik~~-~~vPLVaDiHf~ 84 (361)
T COG0821 38 TVAQIKALERAGCDIVR-VTVPDMEAAEALKEIKQR-LNVPLVADIHFD 84 (361)
T ss_pred HHHHHHHHHHcCCCEEE-EecCCHHHHHHHHHHHHh-CCCCEEEEeecc
Confidence 45688899999999986 478888887766655554 578998877664
No 125
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=66.17 E-value=62 Score=34.18 Aligned_cols=44 Identities=2% Similarity=-0.111 Sum_probs=34.3
Q ss_pred CCCChHHHHHHHHHHHhcCCcEEeecCCCC----------------HHHHHHHHHHhhhc
Q psy17603 365 DRDLCEPVDKYVTDWLDEGVALVGGCCRTY----------------AEDTLHMKHRLDDW 408 (591)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~Gv~~VGgcCgtg----------------P~~i~~l~~~l~~~ 408 (591)
.|.+|+.+++.++.+.+.|++.|-+|||+- |+.+.++++.+...
T Consensus 72 ~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a 131 (321)
T PRK10415 72 AGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA 131 (321)
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh
Confidence 356788898888777789999999999975 66677777766554
No 126
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=66.07 E-value=1.9e+02 Score=31.15 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=31.3
Q ss_pred cCCCChHHHHHHHHHHHhcCC-c---EEeecCCCC------HHHHHHHHHHhh
Q psy17603 364 IDRDLCEPVDKYVTDWLDEGV-A---LVGGCCRTY------AEDTLHMKHRLD 406 (591)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~Gv-~---~VGgcCgtg------P~~i~~l~~~l~ 406 (591)
+...+++++.+.++++++.+. + |++.-|+.. ++.|+++++..+
T Consensus 325 L~~Gt~e~i~~~v~~~l~~~~~~~gfIl~~gcgi~p~tp~~~eNi~a~v~av~ 377 (378)
T cd03308 325 LKYGTPEECIDYVKELLDTLAPGGGFIFGTDKPIISADDAKPENLIAVIEFVR 377 (378)
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEeCCCcCCCCCCCChHHHHHHHHHHh
Confidence 344567889888888887654 4 999888664 388888887653
No 127
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=65.66 E-value=1.9e+02 Score=31.30 Aligned_cols=70 Identities=10% Similarity=0.039 Sum_probs=39.8
Q ss_pred HHHHHHHcCCC--EEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCC--HHHHHHHHHhhCC-CCeEEE
Q psy17603 198 RIQALVEAGAD--ILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGES--FTQVARTCYNMNP-DQLIAV 272 (591)
Q Consensus 198 ~i~~l~~aGvD--~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~--~~~~~~~~~~~~~-~~~~ai 272 (591)
.++.+.+.|+| +++++. .++.|++..+ +..+.|.+.+.+. .+..|++ +.+.++.+.+... .+-..+
T Consensus 282 ~l~~l~~~g~~~v~~~~~~-~dl~~ak~~~-------g~~~~i~GNl~p~-~L~~Gt~e~i~~~v~~~l~~~~~~~gfIl 352 (378)
T cd03308 282 YLEYLQELPKGKTVGLFEY-GDPKKVKEKL-------GDKKCIAGGFPTT-LLKYGTPEECIDYVKELLDTLAPGGGFIF 352 (378)
T ss_pred HHHHHHhcCCCcEEEcCCC-CCHHHHHHHh-------CCCEEEEcCCCCH-HHhcCCHHHHHHHHHHHHHHhCCCCCEEE
Confidence 34567788998 777777 5777754332 3345667777665 5666653 4444444433211 233556
Q ss_pred EecC
Q psy17603 273 GVNC 276 (591)
Q Consensus 273 GvNC 276 (591)
+.-|
T Consensus 353 ~~gc 356 (378)
T cd03308 353 GTDK 356 (378)
T ss_pred eCCC
Confidence 6667
No 128
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=65.58 E-value=1.1e+02 Score=31.23 Aligned_cols=33 Identities=6% Similarity=-0.069 Sum_probs=25.1
Q ss_pred HHHHHhcCCcEEeecCCC-CHHHHHHHHHHhhhc
Q psy17603 376 VTDWLDEGVALVGGCCRT-YAEDTLHMKHRLDDW 408 (591)
Q Consensus 376 ~~~~~~~Gv~~VGgcCgt-gP~~i~~l~~~l~~~ 408 (591)
+......|+++|=+-|.. .++.+.++++.....
T Consensus 126 i~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~l 159 (260)
T PRK00278 126 IYEARAAGADAILLIVAALDDEQLKELLDYAHSL 159 (260)
T ss_pred HHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHc
Confidence 344568899999998887 677888888876554
No 129
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=65.27 E-value=27 Score=36.17 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHh-cCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEec
Q psy17603 197 PRIQALVEAGADILAIETIPASKEAQMLCRLLRE-WPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVN 275 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~-~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvN 275 (591)
++++..+++|+|+|.+.+| +.++.+.+++.++. .++.++.+|+ |-+++.+.+.. ..+++.|.+-
T Consensus 193 eea~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~~~~~ieAsG----------gIt~~ni~~ya----~~GvD~IsvG 257 (273)
T PRK05848 193 EEAKNAMNAGADIVMCDNM-SVEEIKEVVAYRNANYPHVLLEASG----------NITLENINAYA----KSGVDAISSG 257 (273)
T ss_pred HHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCeEEEEEC----------CCCHHHHHHHH----HcCCCEEEeC
Confidence 3445556789999999887 67788888776553 2333333333 44555555544 2355555554
No 130
>COG1679 Predicted aconitase [General function prediction only]
Probab=65.21 E-value=2.1e+02 Score=31.00 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=23.8
Q ss_pred HHcCCCEEEecccCCHHHHHHHHHHHHhc
Q psy17603 203 VEAGADILAIETIPASKEAQMLCRLLREW 231 (591)
Q Consensus 203 ~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~ 231 (591)
...|+-+|.+-++|+.++.|+.--++...
T Consensus 214 ~~d~IP~~~~~~~p~~d~lKalgAA~ats 242 (403)
T COG1679 214 AGDGIPYFRLALFPSEDELKALGAAMATS 242 (403)
T ss_pred ccCCCCeeccCCCCCHHHHHHHHHHHhhc
Confidence 45689999999999999999887777653
No 131
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=65.14 E-value=1.8e+02 Score=30.75 Aligned_cols=44 Identities=25% Similarity=0.464 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCCCEEEecc-cCCHHHHHHHHHHHHh-cCCCceEE
Q psy17603 195 HRPRIQALVEAGADILAIET-IPASKEAQMLCRLLRE-WPHQKAWL 238 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET-~~~~~Ea~aa~~a~~~-~~~~pv~v 238 (591)
..++++.++++|+|+|.+.+ ..+.......++.+++ +|+.|+++
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~ 140 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA 140 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE
Confidence 35678899999999998875 4444555556666664 34456654
No 132
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=65.09 E-value=87 Score=31.09 Aligned_cols=57 Identities=11% Similarity=0.090 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEe
Q psy17603 197 PRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGV 274 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGv 274 (591)
+|++..+++|+++++.=.+ ..| ++++.++ .+.|++ +.-.++.|+.... ..+++.|++
T Consensus 79 ~~~~~a~~aGA~FivsP~~--~~~---v~~~~~~-~~i~~i-----------PG~~T~~E~~~A~----~~Gad~vkl 135 (213)
T PRK06552 79 VTARLAILAGAQFIVSPSF--NRE---TAKICNL-YQIPYL-----------PGCMTVTEIVTAL----EAGSEIVKL 135 (213)
T ss_pred HHHHHHHHcCCCEEECCCC--CHH---HHHHHHH-cCCCEE-----------CCcCCHHHHHHHH----HcCCCEEEE
Confidence 3556677899999994333 223 3444554 366655 2223567777665 246677776
No 133
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=65.00 E-value=1.2e+02 Score=32.14 Aligned_cols=135 Identities=21% Similarity=0.299 Sum_probs=73.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHh--cCCCceEEEEEecCCCcccCCCCHHHHHHHHH
Q psy17603 185 HVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLRE--WPHQKAWLSFSCKDDKHISNGESFTQVARTCY 262 (591)
Q Consensus 185 ~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~--~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~ 262 (591)
.+.-++-.+...+++-.+.++|+|++.=--|-+- .+.+|++++.+ |.+.+ ++|.+.+=...+ .| +|.+++...-
T Consensus 139 ~idND~Tl~~Lak~Al~~A~AGADiVAPSdMMDG-rV~aIR~aLd~~g~~~v~-ImSYsaKyaS~f-YG-PFRdAa~Sap 214 (324)
T PF00490_consen 139 EIDNDETLERLAKQALSHAEAGADIVAPSDMMDG-RVGAIREALDEAGFSDVP-IMSYSAKYASAF-YG-PFRDAAGSAP 214 (324)
T ss_dssp SBEHHHHHHHHHHHHHHHHHHT-SEEEE-S--TT-HHHHHHHHHHHTTCTTSE-EEEEEEEB-SST-GH-HHHHHHT-HH
T ss_pred eEecHHHHHHHHHHHHHHHHhCCCeeccccccCC-HHHHHHHHHHhCCCCCcc-EEechHHHhhhh-hH-hHHHHhcCCc
Confidence 4677888888899999999999999997666543 35677777774 34445 447766421111 22 6788877652
Q ss_pred hhC---CCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhcccccccccccc
Q psy17603 263 NMN---PDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSC 339 (591)
Q Consensus 263 ~~~---~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~ 339 (591)
... .-|. .|......+++...- .+.|+|.+.+---.....+ +..+|+.
T Consensus 215 ~fgDrktYQm--------dp~N~~EAlre~~~D-------~~EGAD~lMVKPal~YLDI---i~~~k~~----------- 265 (324)
T PF00490_consen 215 KFGDRKTYQM--------DPANRREALREAELD-------IEEGADILMVKPALPYLDI---IRRVKER----------- 265 (324)
T ss_dssp SSSTSTTTSB---------TT-HHHHHHHHHHH-------HHTT-SEEEEESSGGGHHH---HHHHHHH-----------
T ss_pred cccCcccccC--------CCccHHHHHHHhhhh-------HhhCCCEEEeecchhHHHH---HHHHHHh-----------
Confidence 211 1121 255555555544321 1358998887653333332 2223332
Q ss_pred CCCCcceEEecCCCc
Q psy17603 340 KTENIPLVVYPNSGE 354 (591)
Q Consensus 340 ~~~~~pl~~~pn~g~ 354 (591)
.++|+.+|--+|+
T Consensus 266 --~~~P~~aYqVSGE 278 (324)
T PF00490_consen 266 --FDLPVAAYQVSGE 278 (324)
T ss_dssp --CTS-EEEEETHHH
T ss_pred --cCCCEEEEEehHH
Confidence 1689999866664
No 134
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=64.51 E-value=70 Score=33.86 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=63.6
Q ss_pred HcCCCEEEecccCC--------HHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEec
Q psy17603 204 EAGADILAIETIPA--------SKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVN 275 (591)
Q Consensus 204 ~aGvD~i~~ET~~~--------~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvN 275 (591)
+.|+|+|.+...+. ..|+..+++.+++..+.|+.|-.+-+++ .|.+-++.+++.+. ...+. +|
T Consensus 87 ~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~---kD~evleaale~~~---g~~pL---In 157 (319)
T PRK04452 87 EYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPE---KDAEVLEKVAEAAE---GERCL---LG 157 (319)
T ss_pred HhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCC---CCHHHHHHHHHHhC---CCCCE---EE
Confidence 67999999985332 2346667777766678898755533221 23344566666552 23343 56
Q ss_pred CCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhc
Q psy17603 276 CVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREW 328 (591)
Q Consensus 276 C~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~ 328 (591)
....+....+++...++ |+. ++..++.|+..++.+...+.+.
T Consensus 158 Sat~en~~~i~~lA~~y----------~~~-Vva~s~~Dln~ak~L~~~l~~~ 199 (319)
T PRK04452 158 SAEEDNYKKIAAAAMAY----------GHA-VIAWSPLDINLAKQLNILLTEL 199 (319)
T ss_pred ECCHHHHHHHHHHHHHh----------CCe-EEEEcHHHHHHHHHHHHHHHHc
Confidence 66677766666666555 333 3444677777777777766654
No 135
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=64.16 E-value=42 Score=35.23 Aligned_cols=138 Identities=20% Similarity=0.186 Sum_probs=62.5
Q ss_pred HcCCC-EEEecccCCHHHH---HHHHHHHHhcC-CCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCC
Q psy17603 204 EAGAD-ILAIETIPASKEA---QMLCRLLREWP-HQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVR 278 (591)
Q Consensus 204 ~aGvD-~i~~ET~~~~~Ea---~aa~~a~~~~~-~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~ 278 (591)
+-|++ +...|-+..-.-. +...+.+...+ +.|+++.+.-. +.+.+.++++.+ ...++++|.+||.-
T Consensus 19 ~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~------~~~~~~~aa~~~---~~~~~~~IDlN~GC 89 (309)
T PF01207_consen 19 EFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFGN------DPEDLAEAAEIV---AELGFDGIDLNMGC 89 (309)
T ss_dssp CCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-------HHHHHHHHHHH---CCTT-SEEEEEE--
T ss_pred HHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEeec------cHHHHHHHHHhh---hccCCcEEeccCCC
Confidence 45777 8888877643211 11222222223 35888887321 223445555544 34588999999965
Q ss_pred chhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceec
Q psy17603 279 PLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDA 358 (591)
Q Consensus 279 p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~ 358 (591)
|.-.. .+ . .+|+-+ |.+.+.+...+.++++.. .+||.+....|.
T Consensus 90 P~~~v--~~---~---------g~Ga~L-----l~~p~~~~~iv~~~~~~~-------------~~pvsvKiR~g~---- 133 (309)
T PF01207_consen 90 PAPKV--TK---G---------GAGAAL-----LKDPDLLAEIVKAVRKAV-------------PIPVSVKIRLGW---- 133 (309)
T ss_dssp -SHHH--HH---C---------T-GGGG-----GC-HHHHHHHHHHHHHH--------------SSEEEEEEESEC----
T ss_pred CHHHH--hc---C---------CcChhh-----hcChHHhhHHHHhhhccc-------------ccceEEeccccc----
Confidence 54211 11 1 123322 235555666666666542 245544322221
Q ss_pred cCCeecCCCChHHHHHHHHHHHhcCCcEEeecCCC
Q psy17603 359 VNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRT 393 (591)
Q Consensus 359 ~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCgt 393 (591)
..+++...++++.+.+.|++.|-+=|.|
T Consensus 134 -------~~~~~~~~~~~~~l~~~G~~~i~vH~Rt 161 (309)
T PF01207_consen 134 -------DDSPEETIEFARILEDAGVSAITVHGRT 161 (309)
T ss_dssp -------T--CHHHHHHHHHHHHTT--EEEEECS-
T ss_pred -------ccchhHHHHHHHHhhhcccceEEEecCc
Confidence 1123556666677777787777776654
No 136
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=63.43 E-value=32 Score=35.23 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEecccCCH
Q psy17603 187 SEATMAEWHRPRIQALVEAGADILAIETIPAS 218 (591)
Q Consensus 187 ~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~ 218 (591)
+.+++.++-.+-++.|.++|+|.+++|.|.+.
T Consensus 23 ~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~ 54 (254)
T PF03437_consen 23 SMEEIIERAVREAEALEEGGVDGIIVENMGDV 54 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence 78999999999999999999999999998764
No 137
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=63.19 E-value=31 Score=34.82 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEecccCCH
Q psy17603 187 SEATMAEWHRPRIQALVEAGADILAIETIPAS 218 (591)
Q Consensus 187 ~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~ 218 (591)
+.+++.+.-.+-+..|.++|+|.+++|.+.+.
T Consensus 28 ~~~~vid~A~~dA~~leegG~DavivEN~gD~ 59 (263)
T COG0434 28 SLEAVIDRAVRDAAALEEGGVDAVIVENYGDA 59 (263)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEeccCCC
Confidence 77888888888889999999999999998875
No 138
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=63.19 E-value=53 Score=33.78 Aligned_cols=89 Identities=17% Similarity=0.295 Sum_probs=54.3
Q ss_pred CHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhccccc
Q psy17603 253 SFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQK 332 (591)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~ 332 (591)
++..+++.+....+.. ..||+.|-.++.+...++ +|+|.+.+.+|+. ++++.++..++..+
T Consensus 166 ~~~~~v~~~r~~~~~~-~~I~vev~t~eea~~A~~--------------~gaD~I~ld~~~~-e~l~~~v~~i~~~~--- 226 (269)
T cd01568 166 GITEAVKRARAAAPFE-KKIEVEVETLEEAEEALE--------------AGADIIMLDNMSP-EELKEAVKLLKGLP--- 226 (269)
T ss_pred CHHHHHHHHHHhCCCC-CeEEEecCCHHHHHHHHH--------------cCCCEEEECCCCH-HHHHHHHHHhccCC---
Confidence 3455666665432222 459999977766544432 5899999999854 77777776665321
Q ss_pred cccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEee
Q psy17603 333 AWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGG 389 (591)
Q Consensus 333 ~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGg 389 (591)
++|+.+. + |.+++.+.++ .+.|++.|..
T Consensus 227 ----------~i~i~as--G-------------GIt~~ni~~~----a~~Gad~Isv 254 (269)
T cd01568 227 ----------RVLLEAS--G-------------GITLENIRAY----AETGVDVIST 254 (269)
T ss_pred ----------CeEEEEE--C-------------CCCHHHHHHH----HHcCCCEEEE
Confidence 3565552 1 2334555554 4689998875
No 139
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=63.14 E-value=2e+02 Score=30.20 Aligned_cols=39 Identities=15% Similarity=0.031 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHHHhcCCc----EEeecCC----CCHHHHHHHHHHhh
Q psy17603 368 LCEPVDKYVTDWLDEGVA----LVGGCCR----TYAEDTLHMKHRLD 406 (591)
Q Consensus 368 ~~~~~~~~~~~~~~~Gv~----~VGgcCg----tgP~~i~~l~~~l~ 406 (591)
+++++.+.++++++.+.+ ++..-|+ |.++.|+++++..+
T Consensus 288 ~~e~i~~~v~~~l~~~~~~~gfIl~~gc~i~~~tp~eNi~a~v~a~~ 334 (335)
T cd00717 288 PKEAIEKEVKRILKAFGGAPGHIFNLGHGILPDTPPENVKALVEAVH 334 (335)
T ss_pred CHHHHHHHHHHHHHHhCcCCCceeecCCcCCCCcCHHHHHHHHHHHh
Confidence 357788888887765444 7776675 45688888887653
No 140
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=63.10 E-value=31 Score=35.99 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=40.2
Q ss_pred HHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhc-CCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEec
Q psy17603 198 RIQALVEAGADILAIETIPASKEAQMLCRLLREW-PHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVN 275 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~-~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvN 275 (591)
+++..+++|+|+|.+..|+ .++++.+++.+++. +...+.+|. |-+++.+.+.. ..+++.|.+-
T Consensus 211 ea~eal~~gaDiI~LDnm~-~e~vk~av~~~~~~~~~v~ieaSG----------GI~~~ni~~yA----~tGvD~Is~g 274 (289)
T PRK07896 211 QLDEVLAEGAELVLLDNFP-VWQTQEAVQRRDARAPTVLLESSG----------GLTLDTAAAYA----ETGVDYLAVG 274 (289)
T ss_pred HHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHhccCCCEEEEEEC----------CCCHHHHHHHH----hcCCCEEEeC
Confidence 3444568999999999997 88999998877643 233333333 55555555544 2455555543
No 141
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=62.99 E-value=25 Score=35.61 Aligned_cols=48 Identities=15% Similarity=0.058 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEE
Q psy17603 187 SEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSF 240 (591)
Q Consensus 187 ~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf 240 (591)
+.+.+.+ .-+|.++|.++|+|.+++|.+ ..++++.+.+. .+.|+...+
T Consensus 151 ~~~~~~~-ai~Ra~ay~~AGAd~i~~e~~-~~e~~~~i~~~----~~~P~~~~g 198 (240)
T cd06556 151 GDEAGEQ-LIADALAYAPAGADLIVMECV-PVELAKQITEA----LAIPLAGIG 198 (240)
T ss_pred CHHHHHH-HHHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHh----CCCCEEEEe
Confidence 3444444 556899999999999999987 77777766554 356766543
No 142
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=62.72 E-value=2e+02 Score=30.30 Aligned_cols=38 Identities=13% Similarity=-0.007 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHHHhcCC----cEEeecCC----CCHHHHHHHHHHh
Q psy17603 368 LCEPVDKYVTDWLDEGV----ALVGGCCR----TYAEDTLHMKHRL 405 (591)
Q Consensus 368 ~~~~~~~~~~~~~~~Gv----~~VGgcCg----tgP~~i~~l~~~l 405 (591)
+++++.+.++++++.+. .++..-|+ |.++.|+++++..
T Consensus 291 t~e~i~~~v~~~l~~~~~~~g~Il~~Gc~i~~~tp~eni~a~v~a~ 336 (338)
T TIGR01464 291 PEEALEEKVEKILEAFGGKSRYIFNLGHGILPDTPPENVKALVEYV 336 (338)
T ss_pred CHHHHHHHHHHHHHHhccCCCceecCCCcCCCCcCHHHHHHHHHHH
Confidence 57788888888776543 67877775 4467788877754
No 143
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=62.57 E-value=2.1e+02 Score=30.12 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=33.9
Q ss_pred CCChHHHHHHHHHHHhcCCcEEeecCCC----CHHHHHHHHHHhhh
Q psy17603 366 RDLCEPVDKYVTDWLDEGVALVGGCCRT----YAEDTLHMKHRLDD 407 (591)
Q Consensus 366 ~~~~~~~~~~~~~~~~~Gv~~VGgcCgt----gP~~i~~l~~~l~~ 407 (591)
..+++++.+.++++++.|..+++.-||. .++.++++++..+.
T Consensus 290 ~gt~eeI~~~v~~~l~~g~~Il~~gcgi~~~tp~enl~a~v~a~~~ 335 (339)
T PRK06252 290 NGTPEKVKAEAKKCLEDGVDILAPGCGIAPKTPLENIKAMVEARKE 335 (339)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3567889999999998888899999986 45788888887654
No 144
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=62.46 E-value=86 Score=33.15 Aligned_cols=38 Identities=13% Similarity=-0.011 Sum_probs=21.5
Q ss_pred CCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCC
Q psy17603 232 PHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVR 278 (591)
Q Consensus 232 ~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~ 278 (591)
.+.|+++|+... . -+.+.++++.+. ..++++|=+||..
T Consensus 98 ~~~pvi~si~g~----~--~~~~~~~a~~~~---~~gad~iElN~s~ 135 (325)
T cd04739 98 VSIPVIASLNGV----S--AGGWVDYARQIE---EAGADALELNIYA 135 (325)
T ss_pred cCCeEEEEeCCC----C--HHHHHHHHHHHH---hcCCCEEEEeCCC
Confidence 367899887221 1 122345555442 3457888888854
No 145
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=62.43 E-value=20 Score=34.35 Aligned_cols=34 Identities=26% Similarity=0.466 Sum_probs=25.3
Q ss_pred HHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhc
Q psy17603 197 PRIQALVEAGADILAIETIPASKEAQMLCRLLREW 231 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~ 231 (591)
++++..+++|+|+|.+.+| +..+.+.+++.+++.
T Consensus 91 ee~~ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~ 124 (169)
T PF01729_consen 91 EEAEEALEAGADIIMLDNM-SPEDLKEAVEELREL 124 (169)
T ss_dssp HHHHHHHHTT-SEEEEES--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEecCc-CHHHHHHHHHHHhhc
Confidence 3455567799999999998 468888888888864
No 146
>PRK00865 glutamate racemase; Provisional
Probab=62.40 E-value=1.5e+02 Score=30.21 Aligned_cols=49 Identities=27% Similarity=0.192 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceE
Q psy17603 186 VSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAW 237 (591)
Q Consensus 186 ~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~ 237 (591)
.+.+++.++-.+.++.|.+.|+|++++=.+.... .+++.+|+..+.|++
T Consensus 47 ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~~---~~l~~lr~~~~iPvi 95 (261)
T PRK00865 47 KSEEEIRERTLEIVEFLLEYGVKMLVIACNTASA---VALPDLRERYDIPVV 95 (261)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHH---HHHHHHHHhCCCCEE
Confidence 5899999999999999999999998875543221 134556644467765
No 147
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=62.11 E-value=1.5e+02 Score=31.37 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=71.1
Q ss_pred cCC-CEEEecccCCHHHHHH-HHHHHHhc-CCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCCchh
Q psy17603 205 AGA-DILAIETIPASKEAQM-LCRLLREW-PHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLM 281 (591)
Q Consensus 205 aGv-D~i~~ET~~~~~Ea~a-a~~a~~~~-~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~ 281 (591)
-|+ |++.+|-+..-.=... ..+.++.. .+.|+.+++.-. +.+.+.++++.+ ...++++|-+||..|..
T Consensus 33 ~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~g~------~p~~~~~aA~~~---~~~g~d~IdlN~gCP~~ 103 (333)
T PRK11815 33 LSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLGGS------DPADLAEAAKLA---EDWGYDEINLNVGCPSD 103 (333)
T ss_pred hCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEeCC------CHHHHHHHHHHH---HhcCCCEEEEcCCCCHH
Confidence 365 8999988754311110 11222211 246888877211 122344454444 23578999999977653
Q ss_pred hHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCC
Q psy17603 282 VSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNA 361 (591)
Q Consensus 282 i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g 361 (591)
-. .+. ..|..+ +.+.+-+...++++++.. ++||.+....| ++.
T Consensus 104 ~v------~~~--------~~Gs~L-----~~~p~~~~eiv~avr~~v-------------~~pVsvKiR~g--~~~--- 146 (333)
T PRK11815 104 RV------QNG--------RFGACL-----MAEPELVADCVKAMKDAV-------------SIPVTVKHRIG--IDD--- 146 (333)
T ss_pred Hc------cCC--------CeeeHH-----hcCHHHHHHHHHHHHHHc-------------CCceEEEEEee--eCC---
Confidence 11 110 012211 124455556666666532 35666543222 111
Q ss_pred eecCCCChHHHHHHHHHHHhcCCcEEeecCCCC
Q psy17603 362 RWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTY 394 (591)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCgtg 394 (591)
..+.....++++.+.+.|++.|=+-++++
T Consensus 147 ----~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~ 175 (333)
T PRK11815 147 ----QDSYEFLCDFVDTVAEAGCDTFIVHARKA 175 (333)
T ss_pred ----CcCHHHHHHHHHHHHHhCCCEEEEcCCch
Confidence 11234566777777789999887766653
No 148
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=61.35 E-value=2.2e+02 Score=30.13 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=30.6
Q ss_pred HHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHH
Q psy17603 200 QALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVART 260 (591)
Q Consensus 200 ~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~ 260 (591)
+.+.+.|+|.|-+.-..++.|++.. + +..+.+.+.+.+ . +.-|+ .+++.+.
T Consensus 254 ~~~~~~~~~~is~d~~~dl~~~k~~------~-g~~~~i~Gni~p-~-ll~gt-~e~i~~~ 304 (346)
T PRK00115 254 EAMAETGADVVGLDWTVDLAEARRR------V-GDKKALQGNLDP-A-VLLAP-PEAIEEE 304 (346)
T ss_pred HHHHhcCCCEEeeCCCCCHHHHHHH------c-CCCeEEEeCCCh-h-HhcCC-HHHHHHH
Confidence 3456789999988887788775432 2 333666776765 3 33354 3444333
No 149
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=61.05 E-value=2.1e+02 Score=29.71 Aligned_cols=42 Identities=7% Similarity=-0.166 Sum_probs=34.4
Q ss_pred CChHHHHHHHHHHHhcCCcEEeecCCC---CHHHHHHHHHHhhhc
Q psy17603 367 DLCEPVDKYVTDWLDEGVALVGGCCRT---YAEDTLHMKHRLDDW 408 (591)
Q Consensus 367 ~~~~~~~~~~~~~~~~Gv~~VGgcCgt---gP~~i~~l~~~l~~~ 408 (591)
.+++.+.+.++.+.+.|++.|.+|=.+ .|..+..+++.+++.
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~ 196 (287)
T PRK05692 152 VPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAE 196 (287)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHh
Confidence 356889999999999999998877443 689999999888765
No 150
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=60.36 E-value=1.4e+02 Score=37.27 Aligned_cols=115 Identities=14% Similarity=0.126 Sum_probs=72.3
Q ss_pred CCeEEEEecCCC----chh-hHHHHHHHHhcCCceEEecCCCCccc-eeecccccHHHHHHHHHHhhccccccccccccC
Q psy17603 267 DQLIAVGVNCVR----PLM-VSSLIEQLKTENIPLVVYPNSGEHIL-AIETIPASKEAQMLCRLLREWPNQKAWLSFSCK 340 (591)
Q Consensus 267 ~~~~aiGvNC~~----p~~-i~~~l~~l~~~~~~i~~l~~aG~D~l-~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~ 340 (591)
.+...=|.|-++ |+. +...++...+ .|+|++ +|..+.|+..++.+++++++.+...
T Consensus 607 ~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~----------~GidifrifD~lN~~~n~~~~~~~~~~~g~~~-------- 668 (1143)
T TIGR01235 607 FQMLLRGANGVGYTNYPDNVVKYFVKQAAQ----------GGIDIFRVFDSLNWVENMRVGMDAVAEAGKVV-------- 668 (1143)
T ss_pred eeeeeccccccCccCCCHHHHHHHHHHHHH----------cCCCEEEECccCcCHHHHHHHHHHHHHcCCEE--------
Confidence 344445566644 433 4444444433 588988 6778888999999999999875210
Q ss_pred CCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCCC---CHHHHHHHHHHhhhc
Q psy17603 341 TENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRT---YAEDTLHMKHRLDDW 408 (591)
Q Consensus 341 ~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCgt---gP~~i~~l~~~l~~~ 408 (591)
..-++|-. ...|.. + ...+.+.+.+.++++.++|++.|.++=.. .|..+..|++.|+..
T Consensus 669 ---~~~i~yt~--~~~d~~--~--~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~ 730 (1143)
T TIGR01235 669 ---EAAICYTG--DILDPA--R--PKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREK 730 (1143)
T ss_pred ---EEEEEEec--cCCCcC--C--CCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 11223311 001110 0 11235778888899999999988765333 699999999998775
No 151
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=60.08 E-value=2e+02 Score=29.19 Aligned_cols=43 Identities=12% Similarity=-0.056 Sum_probs=34.6
Q ss_pred CChHHHHHHHHHHHhcCCcEEeecCC---CCHHHHHHHHHHhhhcc
Q psy17603 367 DLCEPVDKYVTDWLDEGVALVGGCCR---TYAEDTLHMKHRLDDWV 409 (591)
Q Consensus 367 ~~~~~~~~~~~~~~~~Gv~~VGgcCg---tgP~~i~~l~~~l~~~~ 409 (591)
.+++.+.+.++.+.+.|++.|.++=. ..|..+..+.+.+++..
T Consensus 138 ~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~ 183 (263)
T cd07943 138 ASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREAL 183 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhC
Confidence 45688899999999999999887622 37999999999987753
No 152
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=59.21 E-value=2e+02 Score=30.65 Aligned_cols=91 Identities=12% Similarity=0.106 Sum_probs=56.1
Q ss_pred CCCCHHHHHHH---HHHHHHHHHHcCCCEEEeccc----------CC-----------H----HHHHHHHHHHHhcCCCc
Q psy17603 184 EHVSEATMAEW---HRPRIQALVEAGADILAIETI----------PA-----------S----KEAQMLCRLLREWPHQK 235 (591)
Q Consensus 184 ~~~~~e~l~~~---h~~~i~~l~~aGvD~i~~ET~----------~~-----------~----~Ea~aa~~a~~~~~~~p 235 (591)
..++.+++.+. |..-++...++|.|.+-+..- |. + +-+..+++++|+..+.+
T Consensus 129 ~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~ 208 (343)
T cd04734 129 KAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPD 208 (343)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCC
Confidence 45777777654 555555556789999977761 11 1 12346677777655666
Q ss_pred eEEEEEecCCCcccCCCCHHHHHHHHHhhCCCC-eEEEEe
Q psy17603 236 AWLSFSCKDDKHISNGESFTQVARTCYNMNPDQ-LIAVGV 274 (591)
Q Consensus 236 v~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~-~~aiGv 274 (591)
+.|.+.+..+....+|.++++.++.+......+ ++.|-|
T Consensus 209 ~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~v 248 (343)
T cd04734 209 FIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNV 248 (343)
T ss_pred CeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEe
Confidence 667776665555567888887776654333344 566655
No 153
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=57.88 E-value=2e+02 Score=28.37 Aligned_cols=85 Identities=15% Similarity=0.206 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEE-EEEecCCC-----------cccCCCCHHHHHHHHH
Q psy17603 195 HRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWL-SFSCKDDK-----------HISNGESFTQVARTCY 262 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~v-Sf~~~~~g-----------~l~~G~~~~~~~~~~~ 262 (591)
..+.+++++++|+.+|-+ |+.+..-.+.+..+.++++. ++.| ..|+-... -+.++..-.++++.+.
T Consensus 24 ~~~~~~a~~~gGi~~iEv-t~~~~~~~~~i~~l~~~~~~-~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~~~~v~~~~~ 101 (206)
T PRK09140 24 ALAHVGALIEAGFRAIEI-PLNSPDPFDSIAALVKALGD-RALIGAGTVLSPEQVDRLADAGGRLIVTPNTDPEVIRRAV 101 (206)
T ss_pred HHHHHHHHHHCCCCEEEE-eCCCccHHHHHHHHHHHcCC-CcEEeEEecCCHHHHHHHHHcCCCEEECCCCCHHHHHHHH
Confidence 345567899999998744 23322222233333445543 3333 33432211 1123333345555543
Q ss_pred hhCCCCeEEEEecCCCchhhHHH
Q psy17603 263 NMNPDQLIAVGVNCVRPLMVSSL 285 (591)
Q Consensus 263 ~~~~~~~~aiGvNC~~p~~i~~~ 285 (591)
. ..-+...| |..|+.+...
T Consensus 102 ~--~~~~~~~G--~~t~~E~~~A 120 (206)
T PRK09140 102 A--LGMVVMPG--VATPTEAFAA 120 (206)
T ss_pred H--CCCcEEcc--cCCHHHHHHH
Confidence 2 22334455 7777665444
No 154
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=57.84 E-value=56 Score=33.50 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEecccCCH
Q psy17603 186 VSEATMAEWHRPRIQALVEAGADILAIETIPAS 218 (591)
Q Consensus 186 ~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~ 218 (591)
.+.+++.+.-.+-+++|.++|+|.+++|.|.+.
T Consensus 21 ~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d~ 53 (257)
T TIGR00259 21 DNLNAVIDKAWKDAMALEEGGVDAVMFENFFDA 53 (257)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 468889998888899999999999999998764
No 155
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.78 E-value=44 Score=34.85 Aligned_cols=43 Identities=30% Similarity=0.411 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHh-cCCCceEEEE
Q psy17603 197 PRIQALVEAGADILAIETIPASKEAQMLCRLLRE-WPHQKAWLSF 240 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~-~~~~pv~vSf 240 (591)
+++...+++|+|+|.+..|+ ..+.+.+++.+++ .+..|+.+|.
T Consensus 207 eea~eA~~~GaD~I~LDn~~-~e~l~~av~~~~~~~~~i~leAsG 250 (288)
T PRK07428 207 EQVQEALEYGADIIMLDNMP-VDLMQQAVQLIRQQNPRVKIEASG 250 (288)
T ss_pred HHHHHHHHcCCCEEEECCCC-HHHHHHHHHHHHhcCCCeEEEEEC
Confidence 34444567899999999875 5777777777764 3444544443
No 156
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.72 E-value=79 Score=33.01 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhc
Q psy17603 250 NGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREW 328 (591)
Q Consensus 250 ~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~ 328 (591)
-| ++.++++.+....+... |-|-|-..+.. .+. +++|+|++.+..|+ +++++.++..+++.
T Consensus 183 ~G-~i~~ai~~~r~~~~~~k--IeVEv~tl~ea---~ea-----------l~~gaDiI~LDnm~-~e~vk~av~~~~~~ 243 (289)
T PRK07896 183 AG-SVVAALRAVRAAAPDLP--CEVEVDSLEQL---DEV-----------LAEGAELVLLDNFP-VWQTQEAVQRRDAR 243 (289)
T ss_pred hC-cHHHHHHHHHHhCCCCC--EEEEcCCHHHH---HHH-----------HHcCCCEEEeCCCC-HHHHHHHHHHHhcc
Confidence 45 67888888765322222 55555443332 222 24799999999998 99999999877654
No 157
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=57.59 E-value=2.4e+02 Score=29.30 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=27.2
Q ss_pred CCCChHHHHHHHHHHHhc-----CCcEEeecCCCC----HHHHHHHHHHh
Q psy17603 365 DRDLCEPVDKYVTDWLDE-----GVALVGGCCRTY----AEDTLHMKHRL 405 (591)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~-----Gv~~VGgcCgtg----P~~i~~l~~~l 405 (591)
...+++++.+.++++++. |-.+++.-|+.. ++.|+++++..
T Consensus 279 ~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~i~~~~p~enl~a~v~a~ 328 (330)
T cd03465 279 LNGSPEEIKEEVKELLEKLLKGGGGYILSSGCEIPPDTPIENIKAMIDAV 328 (330)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCHHHHHHHHHHH
Confidence 344677787777777654 234888888754 56777777654
No 158
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=57.43 E-value=96 Score=33.75 Aligned_cols=44 Identities=14% Similarity=0.068 Sum_probs=23.9
Q ss_pred HhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCCch
Q psy17603 229 REWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPL 280 (591)
Q Consensus 229 ~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p~ 280 (591)
+++++.|+++|+.- +.+.++..+.+......++++|=+|-+.|.
T Consensus 109 ~~~~~~pvIaSi~~--------~~s~~~~~~~a~~~e~~GaD~iELNiSCPn 152 (385)
T PLN02495 109 EEYPDRILIASIME--------EYNKDAWEEIIERVEETGVDALEINFSCPH 152 (385)
T ss_pred hhCCCCcEEEEccC--------CCCHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 34567899998731 233333333322222345778777766554
No 159
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.37 E-value=46 Score=34.51 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHh
Q psy17603 197 PRIQALVEAGADILAIETIPASKEAQMLCRLLRE 230 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~ 230 (591)
+++...+++|+|+|.+.+| +.++++.+++.+++
T Consensus 193 eea~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~ 225 (278)
T PRK08385 193 EDALKAAKAGADIIMLDNM-TPEEIREVIEALKR 225 (278)
T ss_pred HHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHHh
Confidence 4556667899999999998 47888888887775
No 160
>PRK08227 autoinducer 2 aldolase; Validated
Probab=57.10 E-value=2.4e+02 Score=29.08 Aligned_cols=33 Identities=6% Similarity=-0.082 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHhcCCcEEeecCCCCHHHHHHHHH
Q psy17603 369 CEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKH 403 (591)
Q Consensus 369 ~~~~~~~~~~~~~~Gv~~VGgcCgtgP~~i~~l~~ 403 (591)
+..++-.++-..++|+++|-.+.. + +.++++++
T Consensus 157 ~~~ia~aaRiaaELGADiVK~~y~-~-~~f~~vv~ 189 (264)
T PRK08227 157 ARYFSLATRIAAEMGAQIIKTYYV-E-EGFERITA 189 (264)
T ss_pred HHHHHHHHHHHHHHcCCEEecCCC-H-HHHHHHHH
Confidence 344555566567999999999873 3 44444444
No 161
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=56.77 E-value=2.8e+02 Score=29.80 Aligned_cols=42 Identities=7% Similarity=-0.032 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHHHhcCCcEEeecCCC---CHHHHHHHHHHhhhc
Q psy17603 367 DLCEPVDKYVTDWLDEGVALVGGCCRT---YAEDTLHMKHRLDDW 408 (591)
Q Consensus 367 ~~~~~~~~~~~~~~~~Gv~~VGgcCgt---gP~~i~~l~~~l~~~ 408 (591)
.+++.+.+.++.+.+.|++.|..|=.+ .|..+..+++.++..
T Consensus 138 ~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~ 182 (363)
T TIGR02090 138 TDIDFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKEN 182 (363)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcc
Confidence 456788888898899999988776443 589999998888654
No 162
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=56.73 E-value=2.3e+02 Score=28.84 Aligned_cols=42 Identities=10% Similarity=0.010 Sum_probs=34.1
Q ss_pred CChHHHHHHHHHHHhcCCcEEeecCCC---CHHHHHHHHHHhhhc
Q psy17603 367 DLCEPVDKYVTDWLDEGVALVGGCCRT---YAEDTLHMKHRLDDW 408 (591)
Q Consensus 367 ~~~~~~~~~~~~~~~~Gv~~VGgcCgt---gP~~i~~l~~~l~~~ 408 (591)
.+++.+.+.++++.++|++.|.+|=.+ .|..+..+++.+++.
T Consensus 140 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~ 184 (268)
T cd07940 140 TDLDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKEN 184 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHh
Confidence 356788999999999999998876543 689999999888775
No 163
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=56.22 E-value=2.1e+02 Score=28.17 Aligned_cols=106 Identities=18% Similarity=0.259 Sum_probs=55.4
Q ss_pred HHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcc------cCCCCHHHHHHHHHhhCCCCeE
Q psy17603 197 PRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHI------SNGESFTQVARTCYNMNPDQLI 270 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l------~~G~~~~~~~~~~~~~~~~~~~ 270 (591)
++++.+++.|+|.+++-|.. +.+...+.++++++...+++++..++..... .+..++.+.++.+.+.....+.
T Consensus 86 e~~~~~~~~Gad~vvigs~~-l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~ii 164 (234)
T cd04732 86 EDIERLLDLGVSRVIIGTAA-VKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAII 164 (234)
T ss_pred HHHHHHHHcCCCEEEECchH-HhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEE
Confidence 34455667899999887754 3344455566666655688888877543211 1244566777766442223333
Q ss_pred EEEecCCC--chhhHHHHHHHHhcCCceEEecCCCC
Q psy17603 271 AVGVNCVR--PLMVSSLIEQLKTENIPLVVYPNSGE 304 (591)
Q Consensus 271 aiGvNC~~--p~~i~~~l~~l~~~~~~i~~l~~aG~ 304 (591)
..++...+ ...-..+++.+.+.. .+-.+.++|+
T Consensus 165 i~~~~~~g~~~g~~~~~i~~i~~~~-~ipvi~~GGi 199 (234)
T cd04732 165 YTDISRDGTLSGPNFELYKELAAAT-GIPVIASGGV 199 (234)
T ss_pred EEeecCCCccCCCCHHHHHHHHHhc-CCCEEEecCC
Confidence 33343211 111234455554321 2334556664
No 164
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=55.73 E-value=1.9e+02 Score=34.40 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCEE-EecccCCHHHHHHHHHHHHhcCCCceEEEE
Q psy17603 189 ATMAEWHRPRIQALVEAGADIL-AIETIPASKEAQMLCRLLREWPHQKAWLSF 240 (591)
Q Consensus 189 e~l~~~h~~~i~~l~~aGvD~i-~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf 240 (591)
+.+...|-+| ..++|+|+| +|..+..++..+.+++++++ .++-+=.++
T Consensus 629 DnVi~~Fvkq---aa~~GIDvFRiFDsLNwv~~M~vaidAV~e-~gkv~Eati 677 (1149)
T COG1038 629 DNVIREFVKQ---AAKSGIDVFRIFDSLNWVEQMRVAIDAVRE-AGKVAEATI 677 (1149)
T ss_pred hHHHHHHHHH---HHhcCccEEEeehhhcchhhhhhHHHHHHh-cCCeEEEEE
Confidence 4444444433 346899998 77888888889999999997 344333444
No 165
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=55.62 E-value=2e+02 Score=29.16 Aligned_cols=65 Identities=20% Similarity=0.362 Sum_probs=48.9
Q ss_pred HHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcc------cCCCCHHHHHHHHHh
Q psy17603 197 PRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHI------SNGESFTQVARTCYN 263 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l------~~G~~~~~~~~~~~~ 263 (591)
+.++.|+++|++.+++-|+. ...-.-..+++++|+ -.++|+..++.+... .++.++.+.++.+.+
T Consensus 88 ~~v~~ll~~G~~rViiGt~a-v~~p~~v~~~~~~~g-~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~ 158 (241)
T COG0106 88 EDVEALLDAGVARVIIGTAA-VKNPDLVKELCEEYG-DRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEE 158 (241)
T ss_pred HHHHHHHHCCCCEEEEecce-ecCHHHHHHHHHHcC-CcEEEEEEccCCccccccccccccCCHHHHHHHHHh
Confidence 45667889999999999987 445556667778887 778999999765433 355678888888854
No 166
>PLN02433 uroporphyrinogen decarboxylase
Probab=55.30 E-value=2.8e+02 Score=29.40 Aligned_cols=83 Identities=10% Similarity=0.089 Sum_probs=46.0
Q ss_pred HHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCC--HHHHHHHHHhhCCCCeEEEEecC-
Q psy17603 200 QALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGES--FTQVARTCYNMNPDQLIAVGVNC- 276 (591)
Q Consensus 200 ~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~--~~~~~~~~~~~~~~~~~aiGvNC- 276 (591)
+.+.+.|+|+|-+.-..++.|++..+ +..+.+.+.+.+ .+..|++ +.+.++.+.+....+-..+..-|
T Consensus 247 ~~~~~~~~~~i~~d~~~dl~e~~~~~-------g~~~~l~GNi~p--~ll~gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~ 317 (345)
T PLN02433 247 ERLAGTGVDVIGLDWTVDMADARRRL-------GSDVAVQGNVDP--AVLFGSKEAIEKEVRDVVKKAGPQGHILNLGHG 317 (345)
T ss_pred HHHHhcCCCEEEcCCCCCHHHHHHHh-------CCCeEEEeCCCc--hhhCCCHHHHHHHHHHHHHHcCCCCeEEecCCC
Confidence 35567899999988888888865432 334666777765 2445643 34444444332111114445556
Q ss_pred ----CCchhhHHHHHHHHh
Q psy17603 277 ----VRPLMVSSLIEQLKT 291 (591)
Q Consensus 277 ----~~p~~i~~~l~~l~~ 291 (591)
+.++.+..+++..++
T Consensus 318 i~~~tp~eNi~a~v~av~~ 336 (345)
T PLN02433 318 VLVGTPEENVAHFFDVARE 336 (345)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 334555555555443
No 167
>PLN02591 tryptophan synthase
Probab=54.94 E-value=2.5e+02 Score=28.65 Aligned_cols=82 Identities=15% Similarity=0.175 Sum_probs=55.0
Q ss_pred chhHHHHHHHHHcCCcEEEeec-CCcH-HHHHHHHhccccc---------CCCCCCCCCcHHHHHHHhhhcCCCCeeEEE
Q psy17603 471 EPVDKYVTDWLDEGVALVGGCC-RTYA-EDTLHMKHRLDDW---------DDKHISNGESFTQVARTCYNMNPDQLIAVG 539 (591)
Q Consensus 471 e~~a~~~~~~~~~G~~~vgGCc-gttp-~~i~~l~~~~~~~---------d~~~l~dG~~l~~~~~~~~~~~~~~~~avG 539 (591)
|+..+......+.|...|= |+ +||+ +.|+.+++.-+++ .......-..+++.++.+++. ...+..+|
T Consensus 118 ee~~~~~~~~~~~gl~~I~-lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~-~~~Pv~vG 195 (250)
T PLN02591 118 EETEALRAEAAKNGIELVL-LTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEV-TDKPVAVG 195 (250)
T ss_pred HHHHHHHHHHHHcCCeEEE-EeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhc-CCCceEEe
Confidence 3334444445568988877 56 6664 5678888776666 222223345577777777743 45689999
Q ss_pred EcCCChhhHHHHHHH
Q psy17603 540 VNCVRPLMVSPLIEQ 554 (591)
Q Consensus 540 iNC~~p~~v~~~i~~ 554 (591)
+-++.++++.++++.
T Consensus 196 FGI~~~e~v~~~~~~ 210 (250)
T PLN02591 196 FGISKPEHAKQIAGW 210 (250)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999998654
No 168
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=54.89 E-value=2.8e+02 Score=29.16 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=33.2
Q ss_pred HHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHH
Q psy17603 198 RIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVART 260 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~ 260 (591)
.++.+.+.|+|+|.+....++.|++.. -+..+.+.+.+.+. .+ .|++ +++.+.
T Consensus 243 ~~~~~~~~~~~~~s~d~~~dl~e~k~~-------~g~~~~i~Gni~p~-~l-~~~~-e~i~~~ 295 (335)
T cd00717 243 LLEDLAQLGADVVGLDWRVDLDEARKR-------LGPKVALQGNLDPA-LL-YAPK-EAIEKE 295 (335)
T ss_pred HHHHHHhcCCCEEEeCCCCCHHHHHHH-------hCCCeEEEeCCChh-hh-cCCH-HHHHHH
Confidence 345667789999998888888775433 23456777777663 33 3433 444443
No 169
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=54.74 E-value=1.2e+02 Score=30.51 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=29.2
Q ss_pred CCChHHHHHHHHHHHhcCCcEEeecCCCC----------------HHHHHHHHHHhhh
Q psy17603 366 RDLCEPVDKYVTDWLDEGVALVGGCCRTY----------------AEDTLHMKHRLDD 407 (591)
Q Consensus 366 ~~~~~~~~~~~~~~~~~Gv~~VGgcCgtg----------------P~~i~~l~~~l~~ 407 (591)
+.+++++.+.++.+.+ +.++|-+|||+- |+.+.++++.+++
T Consensus 81 g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~ 137 (233)
T cd02911 81 SSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE 137 (233)
T ss_pred CCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh
Confidence 3456788888877656 469999999952 6666666666655
No 170
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=54.73 E-value=3.6e+02 Score=30.40 Aligned_cols=165 Identities=10% Similarity=0.096 Sum_probs=88.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEecccCC-HHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHh
Q psy17603 185 HVSEATMAEWHRPRIQALVEAGADILAIETIPA-SKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYN 263 (591)
Q Consensus 185 ~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~-~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~ 263 (591)
.++.++..++.+ .|.+.|+|.|-+-.+.. ..|...+..+++... .+.+++|.- . .-..+..+++.+.
T Consensus 19 ~~s~e~K~~ia~----~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~~~-~~~i~al~r-----~-~~~did~a~~al~- 86 (494)
T TIGR00973 19 SLTVEEKLQIAL----ALERLGVDIIEAGFPVSSPGDFEAVQRIARTVK-NPRVCGLAR-----C-VEKDIDAAAEALK- 86 (494)
T ss_pred CcCHHHHHHHHH----HHHHcCCCEEEEECCCCCHHHHHHHHHHHHhCC-CCEEEEEcC-----C-CHHhHHHHHHhcc-
Confidence 367888887776 57789999996543322 345555533334332 244555521 1 1123444444331
Q ss_pred hCCCCeEEEEe-cCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhccccccccccccCCC
Q psy17603 264 MNPDQLIAVGV-NCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTE 342 (591)
Q Consensus 264 ~~~~~~~aiGv-NC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~ 342 (591)
..+...|.+ ..+++.++...++. ..+ ..++.++.+++.+++.+.
T Consensus 87 --~~~~~~v~i~~~~S~~h~~~~l~~---s~~------------------e~l~~~~~~v~~a~~~g~------------ 131 (494)
T TIGR00973 87 --PAEKFRIHTFIATSPIHLEHKLKM---TRD------------------EVLERAVGMVKYAKNFTD------------ 131 (494)
T ss_pred --ccCCCEEEEEEccCHHHHHHHhCC---CHH------------------HHHHHHHHHHHHHHHcCC------------
Confidence 122223333 33556555443321 100 012334556666666531
Q ss_pred CcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCC---CCHHHHHHHHHHhhhcc
Q psy17603 343 NIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCR---TYAEDTLHMKHRLDDWV 409 (591)
Q Consensus 343 ~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCg---tgP~~i~~l~~~l~~~~ 409 (591)
-+... ..++ +..+++.+.+.++.+.+.|++.|.+|=. ..|..+..+++.+++..
T Consensus 132 --~v~f~--------~Ed~---~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~ 188 (494)
T TIGR00973 132 --DVEFS--------CEDA---GRTEIPFLARIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENV 188 (494)
T ss_pred --eEEEE--------cCCC---CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHhh
Confidence 11111 1111 2345678888888888999999887743 36999999999887653
No 171
>PRK14057 epimerase; Provisional
Probab=54.57 E-value=74 Score=32.57 Aligned_cols=106 Identities=8% Similarity=0.012 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCcEE------e---ecCCCCHHHHHHHHHHhhhcccCccccccccccCCCCchhhhhhhCCcchhh
Q psy17603 370 EPVDKYVTDWLDEGVALV------G---GCCRTYAEDTLHMKHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQ 440 (591)
Q Consensus 370 ~~~~~~~~~~~~~Gv~~V------G---gcCgtgP~~i~~l~~~l~~~~~~~~~~~pd~~~~~plws~~~~~~~P~~~~~ 440 (591)
..+.+.++++.+.|++.+ | =|=+.||..++++.+ . . | ..+++|..+|+...
T Consensus 32 ~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~----~-~-------------p-~DvHLMV~~P~~~i- 91 (254)
T PRK14057 32 IALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQ----T-F-------------I-KDVHLMVADQWTAA- 91 (254)
T ss_pred HHHHHHHHHHHHCCCCEEEEeccCCccCCccccCHHHHHHhcc----C-C-------------C-eeEEeeeCCHHHHH-
Confidence 456777777777776553 2 244679999988843 1 1 1 25678999999766
Q ss_pred cchhhhhCCCCcccccccCCCCcccccCCcchhHHHHHHHHHcCCc--------EEE-e-ecCCcHHHHHHHHhccc
Q psy17603 441 THRDFIKGSQTNDFLRDYNSPNLWIDRDLCEPVDKYVTDWLDEGVA--------LVG-G-CCRTYAEDTLHMKHRLD 507 (591)
Q Consensus 441 ~h~~~i~aG~~v~~~~~y~~~~~~l~~~~~e~~a~~~~~~~~~G~~--------~vg-G-Ccgttp~~i~~l~~~~~ 507 (591)
..|+++|++.++ .-|.++ ....+..+...+.|++ ..| - +.+|-.+.++.+-+.++
T Consensus 92 --~~~~~aGad~It-~H~Ea~---------~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD 156 (254)
T PRK14057 92 --QACVKAGAHCIT-LQAEGD---------IHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVE 156 (254)
T ss_pred --HHHHHhCCCEEE-Eeeccc---------cCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCC
Confidence 678899987653 223221 2234444555567875 334 3 33344455554444444
No 172
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=54.51 E-value=1.2e+02 Score=33.17 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=24.4
Q ss_pred cCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCCch
Q psy17603 231 WPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPL 280 (591)
Q Consensus 231 ~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p~ 280 (591)
.++.|+++|+.-.+ +.+.+.++++.+. ..++++|=+|+..|.
T Consensus 97 ~~~~p~i~si~g~~-----~~~~~~~~a~~~~---~~g~d~ielN~scP~ 138 (420)
T PRK08318 97 YPDRALIASIMVEC-----NEEEWKEIAPLVE---ETGADGIELNFGCPH 138 (420)
T ss_pred CCCceEEEEeccCC-----CHHHHHHHHHHHH---hcCCCEEEEeCCCCC
Confidence 34578888873210 1122444444442 346889999998876
No 173
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=54.15 E-value=2.7e+02 Score=28.73 Aligned_cols=77 Identities=18% Similarity=0.077 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEec-ccC-----CHHHHHHHHHHHHhc-C-CCceEEEEEecCCCcccCCCCHHH
Q psy17603 185 HVSEATMAEWHRPRIQALVEAGADILAIE-TIP-----ASKEAQMLCRLLREW-P-HQKAWLSFSCKDDKHISNGESFTQ 256 (591)
Q Consensus 185 ~~~~e~l~~~h~~~i~~l~~aGvD~i~~E-T~~-----~~~Ea~aa~~a~~~~-~-~~pv~vSf~~~~~g~l~~G~~~~~ 256 (591)
.++.+. ++..++.+++.|+|.+++. |.+ +.+|=+.+++.+.+. . ..|+++.. .+.+..+
T Consensus 18 ~iD~~~----l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv---------~~~~~~~ 84 (292)
T PRK03170 18 SVDFAA----LRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGT---------GSNSTAE 84 (292)
T ss_pred CcCHHH----HHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeec---------CCchHHH
Confidence 356655 4455667888999998754 322 245656666655532 3 35766444 1234566
Q ss_pred HHHHHHhhCCCCeEEEEe
Q psy17603 257 VARTCYNMNPDQLIAVGV 274 (591)
Q Consensus 257 ~~~~~~~~~~~~~~aiGv 274 (591)
+++.+......+++++.+
T Consensus 85 ~i~~a~~a~~~G~d~v~~ 102 (292)
T PRK03170 85 AIELTKFAEKAGADGALV 102 (292)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 666554333345555544
No 174
>KOG2335|consensus
Probab=53.74 E-value=1.6e+02 Score=31.64 Aligned_cols=70 Identities=23% Similarity=0.303 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHH--HH--hc----CCCceEEEEEecCCCcccCCCCHHHHHHHHHhhC
Q psy17603 194 WHRPRIQALVEAGADILAIETIPASKEAQMLCRL--LR--EW----PHQKAWLSFSCKDDKHISNGESFTQVARTCYNMN 265 (591)
Q Consensus 194 ~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a--~~--~~----~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~ 265 (591)
.||..++.+ |+|++.+|.+- ++.++.- .| ++ .+.|.+|.|.-+ |-+.+.+|++.+.
T Consensus 33 ~fR~L~R~y---~~~l~yTpMi~----a~~fv~~ek~r~~~~st~~~D~PLIvQf~~n------dp~~ll~Aa~lv~--- 96 (358)
T KOG2335|consen 33 AFRRLVRLY---GADLLYTPMIH----AKTFVHSEKYRDSELSTSPEDRPLIVQFGGN------DPENLLKAARLVQ--- 96 (358)
T ss_pred HHHHHHHHh---CCceEechHHH----HHHHhcCccchhhhcccCCCCCceEEEEcCC------CHHHHHHHHHHhh---
Confidence 355444443 89999887753 2222221 01 11 246999998432 2344566666652
Q ss_pred CCCeEEEEecCCCch
Q psy17603 266 PDQLIAVGVNCVRPL 280 (591)
Q Consensus 266 ~~~~~aiGvNC~~p~ 280 (591)
+..++|++||.-|.
T Consensus 97 -~y~D~idlNcGCPq 110 (358)
T KOG2335|consen 97 -PYCDGIDLNCGCPQ 110 (358)
T ss_pred -hhcCcccccCCCCH
Confidence 34599999996553
No 175
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=53.67 E-value=2.6e+02 Score=28.51 Aligned_cols=94 Identities=5% Similarity=-0.023 Sum_probs=57.0
Q ss_pred CCCceEEEEEec-CC-CcccCCCCHHHHHHHHHhhCCCCeEEEEecC------CCchhhHHHHHHHH-----h----cCC
Q psy17603 232 PHQKAWLSFSCK-DD-KHISNGESFTQVARTCYNMNPDQLIAVGVNC------VRPLMVSSLIEQLK-----T----ENI 294 (591)
Q Consensus 232 ~~~pv~vSf~~~-~~-g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC------~~p~~i~~~l~~l~-----~----~~~ 294 (591)
.+.|++.++.+. |. |.+....++.+.+..+. ..++.+|-+.+ .+++.+..+=+... + ...
T Consensus 48 ~~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~---~~GA~aisvlte~~~f~g~~~~l~~v~~~v~iPvl~kdfi~~~~ 124 (260)
T PRK00278 48 GKPAVIAEVKKASPSKGVIREDFDPVEIAKAYE---AGGAACLSVLTDERFFQGSLEYLRAARAAVSLPVLRKDFIIDPY 124 (260)
T ss_pred CCCeEEEEeeCCCCCCCccCCCCCHHHHHHHHH---hCCCeEEEEecccccCCCCHHHHHHHHHhcCCCEEeeeecCCHH
Confidence 347888888773 33 55666667777777663 35677787765 23333333322110 0 013
Q ss_pred ceEEecCCCCccceee-cccccHHHHHHHHHHhhc
Q psy17603 295 PLVVYPNSGEHILAIE-TIPASKEAQMLCRLLREW 328 (591)
Q Consensus 295 ~i~~l~~aG~D~l~iE-T~~d~~E~~~a~~~~~~~ 328 (591)
|+....++|+|.+++= |..+..+++..+..+++.
T Consensus 125 qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~l 159 (260)
T PRK00278 125 QIYEARAAGADAILLIVAALDDEQLKELLDYAHSL 159 (260)
T ss_pred HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHc
Confidence 5556677899988765 443567788888888865
No 176
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=53.46 E-value=1.4e+02 Score=32.09 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEe-cccCC--HHHHHHHHHHHHh-cCCCceEEEEEecCC
Q psy17603 186 VSEATMAEWHRPRIQALVEAGADILAI-ETIPA--SKEAQMLCRLLRE-WPHQKAWLSFSCKDD 245 (591)
Q Consensus 186 ~~~e~l~~~h~~~i~~l~~aGvD~i~~-ET~~~--~~Ea~aa~~a~~~-~~~~pv~vSf~~~~~ 245 (591)
.+++.+.++.+ .+.++|+|.|.+ -|.+. ..++...++.+++ ++..| |.+-+.++
T Consensus 194 ~~~~~l~~~~~----~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~--i~~H~Hnd 251 (347)
T PLN02746 194 VPPSKVAYVAK----ELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDK--LAVHFHDT 251 (347)
T ss_pred CCHHHHHHHHH----HHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCe--EEEEECCC
Confidence 45666666555 677899998755 46554 4677777777774 33223 56666543
No 177
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=53.40 E-value=2.3e+02 Score=27.86 Aligned_cols=106 Identities=15% Similarity=0.246 Sum_probs=54.3
Q ss_pred HHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcc------cCCCCHHHHHHHHHhhCCCCeE
Q psy17603 197 PRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHI------SNGESFTQVARTCYNMNPDQLI 270 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l------~~G~~~~~~~~~~~~~~~~~~~ 270 (591)
++++.+++.|+|.+++-|..- .+...+.++++++...++++++.+....-. ....++.+.++.+.+.....+.
T Consensus 85 ed~~~~~~~Ga~~vvlgs~~l-~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii 163 (230)
T TIGR00007 85 EDVEKLLDLGVDRVIIGTAAV-ENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGII 163 (230)
T ss_pred HHHHHHHHcCCCEEEEChHHh-hCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEE
Confidence 345556678999888776432 233445556666544678888877532111 1234566777766443223344
Q ss_pred EEEecCCCc--hhhHHHHHHHHhcCCceEEecCCCC
Q psy17603 271 AVGVNCVRP--LMVSSLIEQLKTENIPLVVYPNSGE 304 (591)
Q Consensus 271 aiGvNC~~p--~~i~~~l~~l~~~~~~i~~l~~aG~ 304 (591)
...++..+. ..-..+++.+.+. ..+-...++|+
T Consensus 164 ~~~~~~~g~~~g~~~~~i~~i~~~-~~ipvia~GGi 198 (230)
T TIGR00007 164 YTDISRDGTLSGPNFELTKELVKA-VNVPVIASGGV 198 (230)
T ss_pred EEeecCCCCcCCCCHHHHHHHHHh-CCCCEEEeCCC
Confidence 444544221 0113344444432 12345566665
No 178
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=53.01 E-value=3.2e+02 Score=29.36 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=20.2
Q ss_pred CCCCHHHHH---HHHHHHHHHHHHcCCCEEEe
Q psy17603 184 EHVSEATMA---EWHRPRIQALVEAGADILAI 212 (591)
Q Consensus 184 ~~~~~e~l~---~~h~~~i~~l~~aGvD~i~~ 212 (591)
..++.+++. +.|..-++...++|.|.+-+
T Consensus 147 ~~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEI 178 (362)
T PRK10605 147 RALELEEIPGIVNDFRQAIANAREAGFDLVEL 178 (362)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 356776665 55666666777899999854
No 179
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=53.00 E-value=1.2e+02 Score=32.17 Aligned_cols=93 Identities=19% Similarity=0.209 Sum_probs=57.5
Q ss_pred HHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEe
Q psy17603 195 HRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGV 274 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGv 274 (591)
--.|++.|.++|+|++=+ |+|+.++|+++-+.-+. ...|++.-+-|+. .-++..+ ..+++.|=+
T Consensus 36 tv~QI~~L~~aGceiVRv-avp~~~~A~al~~I~~~-~~iPlVADIHFd~----------~lAl~a~----~~g~dkiRI 99 (346)
T TIGR00612 36 TVAQIRALEEAGCDIVRV-TVPDRESAAAFEAIKEG-TNVPLVADIHFDY----------RLAALAM----AKGVAKVRI 99 (346)
T ss_pred HHHHHHHHHHcCCCEEEE-cCCCHHHHHhHHHHHhC-CCCCEEEeeCCCc----------HHHHHHH----HhccCeEEE
Confidence 446888999999999864 77888887766555444 5688886665531 1122222 123445555
Q ss_pred cC---CCchhhHHHHHHHHhcCCceEEecCCC
Q psy17603 275 NC---VRPLMVSSLIEQLKTENIPLVVYPNSG 303 (591)
Q Consensus 275 NC---~~p~~i~~~l~~l~~~~~~i~~l~~aG 303 (591)
|= .+.+.+..+++..+....+|+.=.|+|
T Consensus 100 NPGNig~~e~v~~vv~~ak~~~ipIRIGVN~G 131 (346)
T TIGR00612 100 NPGNIGFRERVRDVVEKARDHGKAMRIGVNHG 131 (346)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEecCCC
Confidence 43 234556666666666666666666665
No 180
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=52.73 E-value=2.7e+02 Score=28.45 Aligned_cols=81 Identities=11% Similarity=0.139 Sum_probs=56.3
Q ss_pred hHHHHHHHHHcCCcEEEeecCCcH-HHHHHHHhccccc---------CCCCCCCCCcHHHHHHHhhhcCCCCeeEEEEcC
Q psy17603 473 VDKYVTDWLDEGVALVGGCCRTYA-EDTLHMKHRLDDW---------DDKHISNGESFTQVARTCYNMNPDQLIAVGVNC 542 (591)
Q Consensus 473 ~a~~~~~~~~~G~~~vgGCcgttp-~~i~~l~~~~~~~---------d~~~l~dG~~l~~~~~~~~~~~~~~~~avGiNC 542 (591)
..++.....+.|...|--|-++|| +.|+.+++.-++| .+........+.+.++.+++. ...+..+|+-.
T Consensus 131 ~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~-~~~pv~vGfGI 209 (258)
T PRK13111 131 AEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAH-TDLPVAVGFGI 209 (258)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhc-CCCcEEEEccc
Confidence 334444455689999998999885 4677777766655 222233345677788887743 34678899999
Q ss_pred CChhhHHHHHHH
Q psy17603 543 VRPLMVSPLIEQ 554 (591)
Q Consensus 543 ~~p~~v~~~i~~ 554 (591)
..++++..+++.
T Consensus 210 ~~~e~v~~~~~~ 221 (258)
T PRK13111 210 STPEQAAAIAAV 221 (258)
T ss_pred CCHHHHHHHHHh
Confidence 999999998763
No 181
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=52.69 E-value=2.8e+02 Score=28.50 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=36.8
Q ss_pred HHHHHHHcCCCEEEecccC-CHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHH---hhCCCCeEEEE
Q psy17603 198 RIQALVEAGADILAIETIP-ASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCY---NMNPDQLIAVG 273 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~ET~~-~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~---~~~~~~~~aiG 273 (591)
.++.+.+.|+|++-++... +..+++ +.+.+ ...+.+-+.+. +..|+. +++.+.+. +.-.. -..++
T Consensus 213 ~~~~l~~~~~d~~~~d~~~~d~~~~~------~~~~~-~~~i~Ggv~~~--~~~~~~-e~i~~~v~~~l~~~~~-~~il~ 281 (306)
T cd00465 213 LLEEMIQLGVDVISFDMTVNEPKEAI------EKVGE-KKTLVGGVDPG--YLPATD-EECIAKVEELVERLGP-HYIIN 281 (306)
T ss_pred HHHHHHHhCcceEecccccCCHHHHH------HHhCC-CEEEECCCCcc--ccCCCH-HHHHHHHHHHHHHhCC-CeEEe
Confidence 3556778899999999765 565542 33332 33445555444 335554 44444433 21112 35666
Q ss_pred ecC
Q psy17603 274 VNC 276 (591)
Q Consensus 274 vNC 276 (591)
-+|
T Consensus 282 ~~c 284 (306)
T cd00465 282 PDC 284 (306)
T ss_pred CCC
Confidence 677
No 182
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=52.27 E-value=2.4e+02 Score=27.89 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=24.9
Q ss_pred HHHHHHHcCCCEEEecc-cCCHH------HHHHHHHHHHhcCCCceEEEE
Q psy17603 198 RIQALVEAGADILAIET-IPASK------EAQMLCRLLREWPHQKAWLSF 240 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~ET-~~~~~------Ea~aa~~a~~~~~~~pv~vSf 240 (591)
+++..++.|+|.+.+.- +.... +++.+.++.+++ +.|++|..
T Consensus 81 ~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~-g~~~iie~ 129 (235)
T cd00958 81 SVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKY-GLPLIAWM 129 (235)
T ss_pred CHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHc-CCCEEEEE
Confidence 45567789998764432 22322 455555555553 78888854
No 183
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=52.08 E-value=2.9e+02 Score=28.50 Aligned_cols=77 Identities=13% Similarity=0.143 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHc-CCCEEEeccc-C-----CHHHHHHHHHHHHhc-C-CCceEEEEEecCCCcccCCCCHH
Q psy17603 185 HVSEATMAEWHRPRIQALVEA-GADILAIETI-P-----ASKEAQMLCRLLREW-P-HQKAWLSFSCKDDKHISNGESFT 255 (591)
Q Consensus 185 ~~~~e~l~~~h~~~i~~l~~a-GvD~i~~ET~-~-----~~~Ea~aa~~a~~~~-~-~~pv~vSf~~~~~g~l~~G~~~~ 255 (591)
.++.+. ++..++.+++. |+|.|++.-. + +.+|-+.+++.+.+. . ..|+++.. ...+..
T Consensus 17 ~iD~~~----~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv---------~~~~~~ 83 (288)
T cd00954 17 EINEDV----LRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHV---------GSLNLK 83 (288)
T ss_pred CCCHHH----HHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEecc---------CCCCHH
Confidence 355655 44555678889 9999866532 2 235555555555432 2 24666544 123456
Q ss_pred HHHHHHHhhCCCCeEEEEe
Q psy17603 256 QVARTCYNMNPDQLIAVGV 274 (591)
Q Consensus 256 ~~~~~~~~~~~~~~~aiGv 274 (591)
++++........+++++-+
T Consensus 84 ~ai~~a~~a~~~Gad~v~~ 102 (288)
T cd00954 84 ESQELAKHAEELGYDAISA 102 (288)
T ss_pred HHHHHHHHHHHcCCCEEEE
Confidence 6666554333445555543
No 184
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=52.02 E-value=1.9e+02 Score=31.68 Aligned_cols=54 Identities=11% Similarity=0.228 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEE-EecccCCHHHHHHHHHHHHhcC-CCceEEEEEecC
Q psy17603 188 EATMAEWHRPRIQALVEAGADIL-AIETIPASKEAQMLCRLLREWP-HQKAWLSFSCKD 244 (591)
Q Consensus 188 ~e~l~~~h~~~i~~l~~aGvD~i-~~ET~~~~~Ea~aa~~a~~~~~-~~pv~vSf~~~~ 244 (591)
.+++.+-|-+ ...+.|+|+| +|..+.+.+..+.++++++++. ..-..++.+..|
T Consensus 96 aDDvVe~Fv~---ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sP 151 (472)
T COG5016 96 ADDVVEKFVE---KAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSP 151 (472)
T ss_pred chHHHHHHHH---HHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCC
Confidence 3555555543 3567899998 7888999999999999999863 234455555554
No 185
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=51.92 E-value=2.5e+02 Score=31.98 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCCEEEecccCCH--HH---------HHHHHHHHHhcCCCceEEEEEec
Q psy17603 197 PRIQALVEAGADILAIETIPAS--KE---------AQMLCRLLREWPHQKAWLSFSCK 243 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET~~~~--~E---------a~aa~~a~~~~~~~pv~vSf~~~ 243 (591)
++++.++++|||-+.+.|.--. +| -..+-+++++|.+..+++|+..+
T Consensus 338 e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k 395 (538)
T PLN02617 338 EVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPR 395 (538)
T ss_pred HHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecC
Confidence 5678899999999999994211 11 24455677778667799999775
No 186
>PRK00915 2-isopropylmalate synthase; Validated
Probab=51.79 E-value=4e+02 Score=30.12 Aligned_cols=163 Identities=11% Similarity=0.116 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEecccC--CHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHH
Q psy17603 185 HVSEATMAEWHRPRIQALVEAGADILAIETIP--ASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCY 262 (591)
Q Consensus 185 ~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~--~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~ 262 (591)
.++.++..++.+ .|.+.|+|.|-+- || +..|...+.++.+...+ +.+.+|. .. + -..+..+++.+.
T Consensus 22 ~~s~e~K~~ia~----~L~~~Gv~~IE~G-~p~~s~~d~~~v~~i~~~~~~-~~i~a~~-r~--~---~~did~a~~a~~ 89 (513)
T PRK00915 22 SLTVEEKLQIAK----QLERLGVDVIEAG-FPASSPGDFEAVKRIARTVKN-STVCGLA-RA--V---KKDIDAAAEALK 89 (513)
T ss_pred CCCHHHHHHHHH----HHHHcCCCEEEEc-CCCCChHHHHHHHHHHhhCCC-CEEEEEc-cC--C---HHHHHHHHHHhh
Confidence 468888887776 6778999999764 44 44565555444443322 3334443 10 0 123444444442
Q ss_pred hhCCCCeEEEEe-cCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhccccccccccccCC
Q psy17603 263 NMNPDQLIAVGV-NCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKT 341 (591)
Q Consensus 263 ~~~~~~~~aiGv-NC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~ 341 (591)
. .+...|.+ .-+++.++...++ ...+ ..++.++.+++.+|+.+
T Consensus 90 ~---~~~~~v~i~~~~Sd~h~~~~l~---~s~~------------------e~l~~~~~~v~~ak~~g------------ 133 (513)
T PRK00915 90 P---AEAPRIHTFIATSPIHMEYKLK---MSRE------------------EVLEMAVEAVKYARSYT------------ 133 (513)
T ss_pred c---CCCCEEEEEECCcHHHHHHHhC---CCHH------------------HHHHHHHHHHHHHHHCC------------
Confidence 2 22222332 2244444433322 1100 01233455666677653
Q ss_pred CCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCC---CCHHHHHHHHHHhhhc
Q psy17603 342 ENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCR---TYAEDTLHMKHRLDDW 408 (591)
Q Consensus 342 ~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCg---tgP~~i~~l~~~l~~~ 408 (591)
.-+...+. +. +..+++.+.+.++.+.+.|++.|.+|=. ..|..+..+++.+++.
T Consensus 134 --~~v~f~~e--------d~---~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~ 190 (513)
T PRK00915 134 --DDVEFSAE--------DA---TRTDLDFLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRER 190 (513)
T ss_pred --CeEEEEeC--------CC---CCCCHHHHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 11111111 11 1345677888888888999998877632 3799999999988765
No 187
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=51.73 E-value=25 Score=36.00 Aligned_cols=45 Identities=31% Similarity=0.285 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceE
Q psy17603 187 SEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAW 237 (591)
Q Consensus 187 ~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~ 237 (591)
+.+++ +--.+++++|.++|+|.|.+|-+|. ++++.+.+.+ +.|++
T Consensus 153 t~~~a-~~~i~ra~a~~~AGA~~i~lE~v~~-~~~~~i~~~v----~iP~i 197 (254)
T cd06557 153 TEEEA-ERLLEDALALEEAGAFALVLECVPA-ELAKEITEAL----SIPTI 197 (254)
T ss_pred CHHHH-HHHHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhC----CCCEE
Confidence 34444 4445688999999999999999985 5666555443 35655
No 188
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=51.63 E-value=1.6e+02 Score=31.18 Aligned_cols=29 Identities=10% Similarity=-0.029 Sum_probs=25.0
Q ss_pred CCChHHHHHHHHHHHhcCCcEEeecCCCC
Q psy17603 366 RDLCEPVDKYVTDWLDEGVALVGGCCRTY 394 (591)
Q Consensus 366 ~~~~~~~~~~~~~~~~~Gv~~VGgcCgtg 394 (591)
|.+|+.+++.++...+.|++.|=+|||+-
T Consensus 75 gsdp~~l~eaA~~~~~~g~~~IdlN~GCP 103 (323)
T COG0042 75 GSDPELLAEAAKIAEELGADIIDLNCGCP 103 (323)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEeeeCCCC
Confidence 45678889988888899999999999974
No 189
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=51.60 E-value=1.8e+02 Score=29.14 Aligned_cols=101 Identities=10% Similarity=0.088 Sum_probs=56.6
Q ss_pred HHHHHHHHcCCCEEEeccc--CCHHHHHHHHHHHHhcCCCceEEEEEecCCCcc------cCCCCHHHHHHHHHhhCCCC
Q psy17603 197 PRIQALVEAGADILAIETI--PASKEAQMLCRLLREWPHQKAWLSFSCKDDKHI------SNGESFTQVARTCYNMNPDQ 268 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET~--~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l------~~G~~~~~~~~~~~~~~~~~ 268 (591)
++++.+++.|+|-+++.|. .+.+ .+-++++++.+..+++|+.+..++++ ..+.++.+.++.+.+.....
T Consensus 86 e~~~~~l~~Ga~kvvigt~a~~~p~---~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ 162 (232)
T PRK13586 86 EKAKRLLSLDVNALVFSTIVFTNFN---LFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLG 162 (232)
T ss_pred HHHHHHHHCCCCEEEECchhhCCHH---HHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCE
Confidence 4455667799998887764 3433 33445666655678899988323332 23456778888875432234
Q ss_pred eEEEEecC----CCchhhHHHHHHHHhcCCceEEecCCCC
Q psy17603 269 LIAVGVNC----VRPLMVSSLIEQLKTENIPLVVYPNSGE 304 (591)
Q Consensus 269 ~~aiGvNC----~~p~~i~~~l~~l~~~~~~i~~l~~aG~ 304 (591)
+..--++. .+|.. .+++.+...... ....+|+
T Consensus 163 ii~tdI~~dGt~~G~d~--el~~~~~~~~~~--viasGGv 198 (232)
T PRK13586 163 IIFTYISNEGTTKGIDY--NVKDYARLIRGL--KEYAGGV 198 (232)
T ss_pred EEEecccccccCcCcCH--HHHHHHHhCCCC--EEEECCC
Confidence 44444444 23332 235555443222 3446776
No 190
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=51.45 E-value=1.1e+02 Score=32.04 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=23.4
Q ss_pred CCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCC-eEEEEecCCCch
Q psy17603 232 PHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQ-LIAVGVNCVRPL 280 (591)
Q Consensus 232 ~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~-~~aiGvNC~~p~ 280 (591)
++.|+++|+.. .++++..+.+......+ +++|=+|++.|.
T Consensus 91 ~~~pvI~Si~G---------~~~~~~~~~a~~~~~~g~ad~iElN~ScPn 131 (310)
T PRK02506 91 PNKPHFLSVVG---------LSPEETHTILKKIQASDFNGLVELNLSCPN 131 (310)
T ss_pred CCCCEEEEEEe---------CcHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 45799999743 33333333322222233 788999988775
No 191
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=51.35 E-value=2.6e+02 Score=27.96 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=50.1
Q ss_pred HHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcc---cCCCCHHHHHHHHHhhCCCCeEEEE
Q psy17603 197 PRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHI---SNGESFTQVARTCYNMNPDQLIAVG 273 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l---~~G~~~~~~~~~~~~~~~~~~~aiG 273 (591)
++++.++++|+|-+++.|-.- .. ..+.++++++++..+++|+.+... .. .++.++.+.++.+... ...+...-
T Consensus 91 edv~~~l~~Ga~~viigt~~~-~~-~~~~~~~~~~~~~~iivslD~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~li~~d 166 (233)
T cd04723 91 ENAQEWLKRGASRVIVGTETL-PS-DDDEDRLAALGEQRLVLSLDFRGG-QLLKPTDFIGPEELLRRLAKW-PEELIVLD 166 (233)
T ss_pred HHHHHHHHcCCCeEEEcceec-cc-hHHHHHHHhcCCCCeEEEEeccCC-eeccccCcCCHHHHHHHHHHh-CCeEEEEE
Confidence 456667789999777766432 22 455667777765578999988643 33 4677888998888654 44555555
Q ss_pred ecC
Q psy17603 274 VNC 276 (591)
Q Consensus 274 vNC 276 (591)
++.
T Consensus 167 i~~ 169 (233)
T cd04723 167 IDR 169 (233)
T ss_pred cCc
Confidence 544
No 192
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=51.24 E-value=91 Score=33.95 Aligned_cols=72 Identities=21% Similarity=0.310 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCCEEEecc-cCC--------------HHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHH
Q psy17603 196 RPRIQALVEAGADILAIET-IPA--------------SKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVART 260 (591)
Q Consensus 196 ~~~i~~l~~aGvD~i~~ET-~~~--------------~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~ 260 (591)
.+.++.+.++|+|.|-++- .|+ .+.++.+++++++...+|+|+-++- +-+++.+.++.
T Consensus 130 ~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsP-------n~t~i~~ia~a 202 (385)
T PLN02495 130 EEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMTP-------NITDITQPARV 202 (385)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeCC-------ChhhHHHHHHH
Confidence 3344456678999999874 222 2345667788887677999998852 22347777776
Q ss_pred HHhhCCCCeEE-EEecCC
Q psy17603 261 CYNMNPDQLIA-VGVNCV 277 (591)
Q Consensus 261 ~~~~~~~~~~a-iGvNC~ 277 (591)
+.+ .++++ +.+|-+
T Consensus 203 a~~---~Gadgi~liNT~ 217 (385)
T PLN02495 203 ALK---SGCEGVAAINTI 217 (385)
T ss_pred HHH---hCCCEEEEeccc
Confidence 644 34444 334643
No 193
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.23 E-value=89 Score=32.43 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=40.8
Q ss_pred CHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhc
Q psy17603 253 SFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREW 328 (591)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~ 328 (591)
++.++++.+....+. .-|-|-|-..+.+..++ ++|+|.+.+.+| +.++++.+++.+++.
T Consensus 168 ~i~~av~~~r~~~~~--~kIeVEv~~leea~~a~--------------~agaDiI~LDn~-~~e~l~~~v~~l~~~ 226 (278)
T PRK08385 168 PLEEAIRRAKEFSVY--KVVEVEVESLEDALKAA--------------KAGADIIMLDNM-TPEEIREVIEALKRE 226 (278)
T ss_pred HHHHHHHHHHHhCCC--CcEEEEeCCHHHHHHHH--------------HcCcCEEEECCC-CHHHHHHHHHHHHhc
Confidence 478888877643222 23667776655544443 368999999999 588999998887653
No 194
>KOG2335|consensus
Probab=51.02 E-value=21 Score=37.97 Aligned_cols=39 Identities=18% Similarity=-0.018 Sum_probs=29.0
Q ss_pred CCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCCCC
Q psy17603 341 TENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTY 394 (591)
Q Consensus 341 ~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCgtg 394 (591)
..+.|||++.. +.+|+.+.++++-...++ +.|++|||.-
T Consensus 71 ~~D~PLIvQf~--------------~ndp~~ll~Aa~lv~~y~-D~idlNcGCP 109 (358)
T KOG2335|consen 71 PEDRPLIVQFG--------------GNDPENLLKAARLVQPYC-DGIDLNCGCP 109 (358)
T ss_pred CCCCceEEEEc--------------CCCHHHHHHHHHHhhhhc-CcccccCCCC
Confidence 45789998744 345678888876555666 9999999974
No 195
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=50.72 E-value=1.3e+02 Score=33.70 Aligned_cols=43 Identities=30% Similarity=0.438 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCCEEEecc-cCCHHHHHHHHHHHH-hcCCCceEE
Q psy17603 196 RPRIQALVEAGADILAIET-IPASKEAQMLCRLLR-EWPHQKAWL 238 (591)
Q Consensus 196 ~~~i~~l~~aGvD~i~~ET-~~~~~Ea~aa~~a~~-~~~~~pv~v 238 (591)
.++++.++++|+|+|.+++ -+........++.++ ++++.|+++
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~ 274 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA 274 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE
Confidence 5788899999999998886 355444555566666 456788887
No 196
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=50.35 E-value=3e+02 Score=28.26 Aligned_cols=75 Identities=11% Similarity=0.163 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEec-ccC-----CHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHH
Q psy17603 186 VSEATMAEWHRPRIQALVEAGADILAIE-TIP-----ASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVAR 259 (591)
Q Consensus 186 ~~~e~l~~~h~~~i~~l~~aGvD~i~~E-T~~-----~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~ 259 (591)
++.+.+ ++.++.+++.|||.|++- |.+ +.+|-+.+++.+.+..+ ++++.. . +.+..++++
T Consensus 17 iD~~~~----~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-~vi~gv--g-------~~~~~~ai~ 82 (279)
T cd00953 17 IDKEKF----KKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-KVIFQV--G-------SLNLEESIE 82 (279)
T ss_pred cCHHHH----HHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-CEEEEe--C-------cCCHHHHHH
Confidence 556554 445667888999998663 433 23566666665554333 333222 1 234566666
Q ss_pred HHHhhCCCCeEEEEe
Q psy17603 260 TCYNMNPDQLIAVGV 274 (591)
Q Consensus 260 ~~~~~~~~~~~aiGv 274 (591)
........+++++.+
T Consensus 83 ~a~~a~~~Gad~v~v 97 (279)
T cd00953 83 LARAAKSFGIYAIAS 97 (279)
T ss_pred HHHHHHHcCCCEEEE
Confidence 554333345554443
No 197
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=49.55 E-value=58 Score=34.11 Aligned_cols=63 Identities=14% Similarity=0.267 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecC
Q psy17603 197 PRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNC 276 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC 276 (591)
++++..+++|+|+|.+.+|+ ..+.+.+++.++. .+.+.. ..|.++..+.+.. ..+++.|.+-+
T Consensus 219 eea~ea~~~gaDiI~LDn~s-~e~~~~av~~~~~----~~~iea--------SGGI~~~ni~~yA----~tGVD~Is~ga 281 (296)
T PRK09016 219 DELDQALKAGADIIMLDNFT-TEQMREAVKRTNG----RALLEV--------SGNVTLETLREFA----ETGVDFISVGA 281 (296)
T ss_pred HHHHHHHHcCCCEEEeCCCC-hHHHHHHHHhhcC----CeEEEE--------ECCCCHHHHHHHH----hcCCCEEEeCc
Confidence 45556678999999999997 6888888876542 222222 2356666665544 24566665543
No 198
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=49.14 E-value=1.5e+02 Score=31.85 Aligned_cols=94 Identities=18% Similarity=0.206 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEE
Q psy17603 194 WHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVG 273 (591)
Q Consensus 194 ~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiG 273 (591)
.-..|++.|.++|+|++=+ |+|+.++|+++-+..+. ...|++.-+-|+. + -+++.+ ..+++.+=
T Consensus 43 atv~Qi~~L~~aGceiVRv-av~~~~~a~al~~I~~~-~~iPlvADIHFd~--~--------lAl~a~----~~G~~~iR 106 (360)
T PRK00366 43 ATVAQIKRLARAGCEIVRV-AVPDMEAAAALPEIKKQ-LPVPLVADIHFDY--R--------LALAAA----EAGADALR 106 (360)
T ss_pred HHHHHHHHHHHcCCCEEEE-ccCCHHHHHhHHHHHHc-CCCCEEEecCCCH--H--------HHHHHH----HhCCCEEE
Confidence 3456888999999999864 77888888776655554 4688886665532 1 122222 12344555
Q ss_pred ecC---CC-chhhHHHHHHHHhcCCceEEecCCC
Q psy17603 274 VNC---VR-PLMVSSLIEQLKTENIPLVVYPNSG 303 (591)
Q Consensus 274 vNC---~~-p~~i~~~l~~l~~~~~~i~~l~~aG 303 (591)
+|= -+ .+.+.++++..+....+|+.=.|+|
T Consensus 107 INPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~G 140 (360)
T PRK00366 107 INPGNIGKRDERVREVVEAAKDYGIPIRIGVNAG 140 (360)
T ss_pred ECCCCCCchHHHHHHHHHHHHHCCCCEEEecCCc
Confidence 553 12 3445555555555555666666655
No 199
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=49.11 E-value=4.8e+02 Score=30.21 Aligned_cols=87 Identities=9% Similarity=0.176 Sum_probs=51.2
Q ss_pred HHHHcCCCEE-EecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEec----
Q psy17603 201 ALVEAGADIL-AIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVN---- 275 (591)
Q Consensus 201 ~l~~aGvD~i-~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvN---- 275 (591)
...+.|+|+| +|..+.+..-++..++++++. +.-+..++++..+. -.+++..++.+......+++.|.|-
T Consensus 104 ~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~-G~~~~~~i~yt~sp----~~t~e~~~~~ak~l~~~Gad~I~IkDtaG 178 (596)
T PRK14042 104 LAVNNGVDVFRVFDALNDARNLKVAIDAIKSH-KKHAQGAICYTTSP----VHTLDNFLELGKKLAEMGCDSIAIKDMAG 178 (596)
T ss_pred HHHHcCCCEEEEcccCcchHHHHHHHHHHHHc-CCEEEEEEEecCCC----CCCHHHHHHHHHHHHHcCCCEEEeCCccc
Confidence 3567899998 556677777788888888874 66555554332111 2233333333322223455555552
Q ss_pred CCCchhhHHHHHHHHhc
Q psy17603 276 CVRPLMVSSLIEQLKTE 292 (591)
Q Consensus 276 C~~p~~i~~~l~~l~~~ 292 (591)
+..|..+..+++.+++.
T Consensus 179 ~l~P~~v~~lv~alk~~ 195 (596)
T PRK14042 179 LLTPTVTVELYAGLKQA 195 (596)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 25588888888887653
No 200
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.07 E-value=1.4e+02 Score=31.23 Aligned_cols=91 Identities=13% Similarity=0.208 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhcccccc
Q psy17603 254 FTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKA 333 (591)
Q Consensus 254 ~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~~ 333 (591)
+.+++..+....+. -.-|++-|-..+.+..++ ++|+|.+.+..|+ +++++.++..+++..
T Consensus 182 i~~av~~~r~~~~~-~~~I~VEv~tleea~eA~--------------~~GaD~I~LDn~~-~e~l~~av~~~~~~~---- 241 (288)
T PRK07428 182 IGEAITRIRQRIPY-PLTIEVETETLEQVQEAL--------------EYGADIIMLDNMP-VDLMQQAVQLIRQQN---- 241 (288)
T ss_pred HHHHHHHHHHhCCC-CCEEEEECCCHHHHHHHH--------------HcCCCEEEECCCC-HHHHHHHHHHHHhcC----
Confidence 88888887653222 245888887766655443 2689999999765 588888888776531
Q ss_pred ccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecC
Q psy17603 334 WLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCC 391 (591)
Q Consensus 334 ~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcC 391 (591)
.+.|+.+. + |.+++.+.+++ ..|+++|-..+
T Consensus 242 --------~~i~leAs--G-------------GIt~~ni~~ya----~tGvD~Isvgs 272 (288)
T PRK07428 242 --------PRVKIEAS--G-------------NITLETIRAVA----ETGVDYISSSA 272 (288)
T ss_pred --------CCeEEEEE--C-------------CCCHHHHHHHH----HcCCCEEEEch
Confidence 13555542 1 23345566554 67999998765
No 201
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=48.85 E-value=2.5e+02 Score=26.93 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCCEEEec
Q psy17603 195 HRPRIQALVEAGADILAIE 213 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~E 213 (591)
..++++.++++|+++|-+-
T Consensus 18 ~~~~~~~l~~~G~~~vev~ 36 (190)
T cd00452 18 ALALAEALIEGGIRAIEIT 36 (190)
T ss_pred HHHHHHHHHHCCCCEEEEe
Confidence 4456778999999998664
No 202
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=48.80 E-value=3e+02 Score=27.72 Aligned_cols=83 Identities=13% Similarity=0.157 Sum_probs=53.2
Q ss_pred chhHHHHHHHHHcCCcEEEeecCCcH-HHHHHHHhccccc------CC---CCCCCCCcHHHHHHHhhhcCCCCeeEEEE
Q psy17603 471 EPVDKYVTDWLDEGVALVGGCCRTYA-EDTLHMKHRLDDW------DD---KHISNGESFTQVARTCYNMNPDQLIAVGV 540 (591)
Q Consensus 471 e~~a~~~~~~~~~G~~~vgGCcgttp-~~i~~l~~~~~~~------d~---~~l~dG~~l~~~~~~~~~~~~~~~~avGi 540 (591)
|+..+..+...+.|...+--|-++|| +.|+.+.+...++ .+ +.......+.+.++.+++. ...+..+|.
T Consensus 116 ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~-~~~pI~vgg 194 (242)
T cd04724 116 EEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY-TDLPIAVGF 194 (242)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc-CCCcEEEEc
Confidence 44555556666789988888888775 4566666633323 21 2222234455666666632 346789999
Q ss_pred cCCChhhHHHHHHH
Q psy17603 541 NCVRPLMVSPLIEQ 554 (591)
Q Consensus 541 NC~~p~~v~~~i~~ 554 (591)
.+..++++.++++.
T Consensus 195 GI~~~e~~~~~~~~ 208 (242)
T cd04724 195 GISTPEQAAEVAKY 208 (242)
T ss_pred cCCCHHHHHHHHcc
Confidence 99999999988755
No 203
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=48.54 E-value=38 Score=38.05 Aligned_cols=62 Identities=19% Similarity=0.365 Sum_probs=45.6
Q ss_pred CCccceeec-ccccHHHHHHHHHHhhc-cccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHH
Q psy17603 303 GEHILAIET-IPASKEAQMLCRLLREW-PNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWL 380 (591)
Q Consensus 303 G~D~l~iET-~~d~~E~~~a~~~~~~~-~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~ 380 (591)
.+|+|++|| -||+.+++.-.+++++. | +. .++| |...+|+ |....+.+++..+..++.
T Consensus 379 yaDliW~ET~~Pdl~~A~~Fa~~v~~~~P-------------~k-~LaY-N~SPSFN-----W~~~~~d~~~~~F~~~L~ 438 (527)
T TIGR01346 379 YADLIWMETSTPDLELAKKFAEGVKSKFP-------------DQ-LLAY-NLSPSFN-----WSAHMEDDEIAKFIQELG 438 (527)
T ss_pred cccEEEecCCCCCHHHHHHHHHHHHHHCC-------------CC-eEEe-cCCCCcc-----ccccCCHHHHHHHHHHHH
Confidence 689999999 89999999999998874 3 11 3444 3334452 444466788999999988
Q ss_pred hcCC
Q psy17603 381 DEGV 384 (591)
Q Consensus 381 ~~Gv 384 (591)
.+|-
T Consensus 439 ~lGy 442 (527)
T TIGR01346 439 DLGY 442 (527)
T ss_pred hcCc
Confidence 8883
No 204
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=48.42 E-value=3e+02 Score=27.68 Aligned_cols=91 Identities=19% Similarity=0.165 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCCCEEEec------ccCC--HH--------------HHHHHHHHHHhcCCCceEEEEEecCCCcccCCC
Q psy17603 195 HRPRIQALVEAGADILAIE------TIPA--SK--------------EAQMLCRLLREWPHQKAWLSFSCKDDKHISNGE 252 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~E------T~~~--~~--------------Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~ 252 (591)
..+.++.+.++|||+|-+. -+-. +. ....+++.+|+..+.|+.+-...++ ....|
T Consensus 16 ~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~--~~~~G- 92 (242)
T cd04724 16 TLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNP--ILQYG- 92 (242)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCH--HHHhC-
Confidence 3345567889999999988 2211 11 1223344444334568543222222 12222
Q ss_pred CHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhc
Q psy17603 253 SFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTE 292 (591)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~ 292 (591)
++..++.+.+ .+++++-+.=.+++....+++.+++.
T Consensus 93 -~~~fi~~~~~---aG~~giiipDl~~ee~~~~~~~~~~~ 128 (242)
T cd04724 93 -LERFLRDAKE---AGVDGLIIPDLPPEEAEEFREAAKEY 128 (242)
T ss_pred -HHHHHHHHHH---CCCcEEEECCCCHHHHHHHHHHHHHc
Confidence 3555665543 35555555434567777777777765
No 205
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.33 E-value=69 Score=33.30 Aligned_cols=61 Identities=8% Similarity=0.127 Sum_probs=37.5
Q ss_pred HHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEec
Q psy17603 198 RIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVN 275 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvN 275 (591)
+++..+++|+|+|.+..|+ .++++.+++.++. ..|+-+ ..|.+++.+.+.. ..+++.|.+-
T Consensus 206 ea~ea~~~gaDiI~LDn~s-~e~l~~av~~~~~--~~~lea----------SGGI~~~ni~~yA----~tGVD~Is~G 266 (281)
T PRK06106 206 QLEEALELGVDAVLLDNMT-PDTLREAVAIVAG--RAITEA----------SGRITPETAPAIA----ASGVDLISVG 266 (281)
T ss_pred HHHHHHHcCCCEEEeCCCC-HHHHHHHHHHhCC--CceEEE----------ECCCCHHHHHHHH----hcCCCEEEeC
Confidence 3444568899999999985 6788888776652 223222 2356666655544 2455655554
No 206
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=48.32 E-value=4.3e+02 Score=29.42 Aligned_cols=87 Identities=15% Similarity=0.217 Sum_probs=48.1
Q ss_pred HHHHcCCCEEEec-ccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEec----
Q psy17603 201 ALVEAGADILAIE-TIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVN---- 275 (591)
Q Consensus 201 ~l~~aGvD~i~~E-T~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvN---- 275 (591)
...++|+|+|-+- .+++....+.+++.+++. +..+-++++.....+ .+-+-+.+.++.+. ..+++.|.+-
T Consensus 104 ~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~-G~~v~~~i~~t~~p~-~~~~~~~~~a~~l~---~~Gad~I~i~Dt~G 178 (448)
T PRK12331 104 KSVENGIDIIRIFDALNDVRNLETAVKATKKA-GGHAQVAISYTTSPV-HTIDYFVKLAKEMQ---EMGADSICIKDMAG 178 (448)
T ss_pred HHHHCCCCEEEEEEecCcHHHHHHHHHHHHHc-CCeEEEEEEeecCCC-CCHHHHHHHHHHHH---HcCCCEEEEcCCCC
Confidence 4567899987544 445556666677787764 555444343322211 11112334444442 3455555552
Q ss_pred CCCchhhHHHHHHHHhc
Q psy17603 276 CVRPLMVSSLIEQLKTE 292 (591)
Q Consensus 276 C~~p~~i~~~l~~l~~~ 292 (591)
+..|..+..+++.+++.
T Consensus 179 ~l~P~~v~~lv~alk~~ 195 (448)
T PRK12331 179 ILTPYVAYELVKRIKEA 195 (448)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 35688888888888754
No 207
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=47.88 E-value=3.8e+02 Score=28.74 Aligned_cols=42 Identities=7% Similarity=-0.159 Sum_probs=33.2
Q ss_pred CChHHHHHHHHHHHhcCCcEEeecCC---CCHHHHHHHHHHhhhc
Q psy17603 367 DLCEPVDKYVTDWLDEGVALVGGCCR---TYAEDTLHMKHRLDDW 408 (591)
Q Consensus 367 ~~~~~~~~~~~~~~~~Gv~~VGgcCg---tgP~~i~~l~~~l~~~ 408 (591)
.+++.+.+.++.+.+.|++.|.+|=. ..|..+..+++.+++.
T Consensus 139 ~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~ 183 (365)
T TIGR02660 139 ADPDFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQA 183 (365)
T ss_pred CCHHHHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHh
Confidence 45678888888888999988876533 3799999999888764
No 208
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=47.87 E-value=2.7e+02 Score=27.91 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcc------cCCCCHHHHHHHHHhhCCCCeE
Q psy17603 197 PRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHI------SNGESFTQVARTCYNMNPDQLI 270 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l------~~G~~~~~~~~~~~~~~~~~~~ 270 (591)
++++.++++|+|-+++.|.. +.+...+.++.++|+++ +++|+...++.-. .++.++.+.++.+.. .++.
T Consensus 89 e~v~~~l~~Ga~kvvigt~a-~~~~~~l~~~~~~fg~~-ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~---~g~~ 163 (234)
T PRK13587 89 SQIMDYFAAGINYCIVGTKG-IQDTDWLKEMAHTFPGR-IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSD---IPLG 163 (234)
T ss_pred HHHHHHHHCCCCEEEECchH-hcCHHHHHHHHHHcCCC-EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHH---cCCC
Confidence 34555667999999888743 22233444556677654 8889887644211 346677888888744 3334
Q ss_pred EEEecC
Q psy17603 271 AVGVNC 276 (591)
Q Consensus 271 aiGvNC 276 (591)
.+-++.
T Consensus 164 ~ii~td 169 (234)
T PRK13587 164 GIIYTD 169 (234)
T ss_pred EEEEec
Confidence 444554
No 209
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=47.80 E-value=1.5e+02 Score=28.15 Aligned_cols=85 Identities=16% Similarity=0.252 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCCEEEecccC-CHHH----HHHHHHHHHhcCCCceEEEEEec------CCC-ccc-CCCCHHHHHHHH
Q psy17603 195 HRPRIQALVEAGADILAIETIP-ASKE----AQMLCRLLREWPHQKAWLSFSCK------DDK-HIS-NGESFTQVARTC 261 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET~~-~~~E----a~aa~~a~~~~~~~pv~vSf~~~------~~g-~l~-~G~~~~~~~~~~ 261 (591)
+.++++.++++|++++.+=-=. +-.| ++.+.+..++ .+.+++|.-... -+| ++. ...++.++-..+
T Consensus 14 ~~~~l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~~~-~~~~liin~~~~la~~~~~dGvHl~~~~~~~~~~r~~~ 92 (180)
T PF02581_consen 14 FLEQLEAALAAGVDLVQLREKDLSDEELLELARRLAELCQK-YGVPLIINDRVDLALELGADGVHLGQSDLPPAEARKLL 92 (180)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHHHH-TTGCEEEES-HHHHHHCT-SEEEEBTTSSSHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHhhc-ceEEEEecCCHHHHHhcCCCEEEecccccchHHhhhhc
Confidence 6677778899999988665422 2333 3444444444 366888765332 122 222 112344443333
Q ss_pred HhhCCCCeEEEEecCCCchhhHHH
Q psy17603 262 YNMNPDQLIAVGVNCVRPLMVSSL 285 (591)
Q Consensus 262 ~~~~~~~~~aiGvNC~~p~~i~~~ 285 (591)
... .-||+.|-+++.+..+
T Consensus 93 ---~~~--~~ig~S~h~~~e~~~a 111 (180)
T PF02581_consen 93 ---GPD--KIIGASCHSLEEAREA 111 (180)
T ss_dssp ---TTT--SEEEEEESSHHHHHHH
T ss_pred ---ccc--eEEEeecCcHHHHHHh
Confidence 112 3578888777764433
No 210
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=47.76 E-value=60 Score=33.41 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=23.8
Q ss_pred HHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEE
Q psy17603 202 LVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSF 240 (591)
Q Consensus 202 l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf 240 (591)
.+++|+|+|.+..|+ ..+.+.+++.++..+..|+.++.
T Consensus 197 A~~~gaD~I~ld~~~-~e~l~~~v~~i~~~~~i~i~asG 234 (269)
T cd01568 197 ALEAGADIIMLDNMS-PEELKEAVKLLKGLPRVLLEASG 234 (269)
T ss_pred HHHcCCCEEEECCCC-HHHHHHHHHHhccCCCeEEEEEC
Confidence 345788988888875 35666666666543345555444
No 211
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=47.75 E-value=1e+02 Score=33.07 Aligned_cols=42 Identities=24% Similarity=0.239 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHH-hcCCCceEEEEEec
Q psy17603 195 HRPRIQALVEAGADILAIETIPASKEAQMLCRLLR-EWPHQKAWLSFSCK 243 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~-~~~~~pv~vSf~~~ 243 (591)
..+.++.|.+.|+|.|++--. .++..++ ..|++|+.+|-...
T Consensus 81 ~~~~l~~l~e~GvDaviv~Dp-------g~i~l~~e~~p~l~ih~S~q~~ 123 (347)
T COG0826 81 LERYLDRLVELGVDAVIVADP-------GLIMLARERGPDLPIHVSTQAN 123 (347)
T ss_pred HHHHHHHHHHcCCCEEEEcCH-------HHHHHHHHhCCCCcEEEeeeEe
Confidence 345566788999999997653 3444555 46889999988653
No 212
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=47.66 E-value=1.3e+02 Score=31.61 Aligned_cols=56 Identities=13% Similarity=0.260 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHh
Q psy17603 254 FTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLR 326 (591)
Q Consensus 254 ~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~ 326 (591)
+.++++.+....+... |-|-|-..+....++ ++|+|++.+.+|+ .++++.+++.++
T Consensus 195 i~~av~~~r~~~~~~k--IeVEv~sleea~ea~--------------~~gaDiI~LDn~s-~e~~~~av~~~~ 250 (296)
T PRK09016 195 IRQAVEKAFWLHPDVP--VEVEVENLDELDQAL--------------KAGADIIMLDNFT-TEQMREAVKRTN 250 (296)
T ss_pred HHHHHHHHHHhCCCCC--EEEEeCCHHHHHHHH--------------HcCCCEEEeCCCC-hHHHHHHHHhhc
Confidence 7788877754322222 556665544333332 3689999999998 589999888654
No 213
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.30 E-value=77 Score=32.85 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=22.3
Q ss_pred HHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEE
Q psy17603 198 RIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSF 240 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf 240 (591)
+++..+++|+|+|.+..| +.++.+.+++.++ +..|+.++.
T Consensus 201 ea~eA~~~gaD~I~LD~~-~~e~l~~~v~~~~--~~i~leAsG 240 (277)
T PRK05742 201 ELRQALAAGADIVMLDEL-SLDDMREAVRLTA--GRAKLEASG 240 (277)
T ss_pred HHHHHHHcCCCEEEECCC-CHHHHHHHHHHhC--CCCcEEEEC
Confidence 333445667777777665 4556665555443 344555444
No 214
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=47.27 E-value=2.6e+02 Score=26.69 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=28.7
Q ss_pred HHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEE
Q psy17603 199 IQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLS 239 (591)
Q Consensus 199 i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vS 239 (591)
++.+.++|+|++.+=..+...+...+++.+++. +.++.+.
T Consensus 70 ~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~-g~~~~v~ 109 (202)
T cd04726 70 AEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKY-GKEVQVD 109 (202)
T ss_pred HHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHc-CCeEEEE
Confidence 456778999999976665555566777777763 6776654
No 215
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=47.24 E-value=3.3e+02 Score=29.17 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcCCCEEEecccC-CHH----HHHHHHHHHHhcCCCceEEEE
Q psy17603 195 HRPRIQALVEAGADILAIETIP-ASK----EAQMLCRLLREWPHQKAWLSF 240 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET~~-~~~----Ea~aa~~a~~~~~~~pv~vSf 240 (591)
+.++++.++++|+++|.+=--. +-. .++.+....+.+ +.+++|.-
T Consensus 159 ll~~l~~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~~~-~~~lIIND 208 (347)
T PRK02615 159 LLEVVEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCHRY-GALFIVND 208 (347)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHh-CCeEEEeC
Confidence 4456778889999988664221 222 234444444443 56777654
No 216
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.92 E-value=1.5e+02 Score=30.75 Aligned_cols=93 Identities=12% Similarity=0.190 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhcccc
Q psy17603 252 ESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQ 331 (591)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~ 331 (591)
.++.++++.+....+. ..-|-+-|...+....++ ++|+|++.+++| +.++++.+++.++...
T Consensus 166 g~i~~~v~~~k~~~p~-~~~I~VEv~tleea~~A~--------------~~GaDiI~LDn~-~~e~l~~~v~~~~~~~-- 227 (273)
T PRK05848 166 KDLKEFIQHARKNIPF-TAKIEIECESLEEAKNAM--------------NAGADIVMCDNM-SVEEIKEVVAYRNANY-- 227 (273)
T ss_pred CcHHHHHHHHHHhCCC-CceEEEEeCCHHHHHHHH--------------HcCCCEEEECCC-CHHHHHHHHHHhhccC--
Confidence 3567777777543221 123555555444433332 368999999987 7888988888754321
Q ss_pred ccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecC
Q psy17603 332 KAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCC 391 (591)
Q Consensus 332 ~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcC 391 (591)
.+..+.+. | |.+++.+.+++ +.||++|...+
T Consensus 228 ----------~~~~ieAs-----------G----gIt~~ni~~ya----~~GvD~IsvG~ 258 (273)
T PRK05848 228 ----------PHVLLEAS-----------G----NITLENINAYA----KSGVDAISSGS 258 (273)
T ss_pred ----------CCeEEEEE-----------C----CCCHHHHHHHH----HcCCCEEEeCh
Confidence 12223331 1 23456666654 68999998754
No 217
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=46.79 E-value=2.8e+02 Score=26.77 Aligned_cols=89 Identities=17% Similarity=0.160 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHh-cCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhC
Q psy17603 187 SEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLRE-WPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMN 265 (591)
Q Consensus 187 ~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~-~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~ 265 (591)
+.++... .++.+ +.|+|+|-+-|--.......+++.+++ +++..+.+-+.+-+.+. ..++.+.
T Consensus 10 ~~~~a~~----~~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~--------~~~~~~~--- 73 (206)
T TIGR03128 10 DIEEALE----LAEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGE--------YEAEQAF--- 73 (206)
T ss_pred CHHHHHH----HHHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchH--------HHHHHHH---
Confidence 4555444 34456 788998877422223333445555554 35555555443322111 1233332
Q ss_pred CCCeEEEEecCCCc-hhhHHHHHHHHh
Q psy17603 266 PDQLIAVGVNCVRP-LMVSSLIEQLKT 291 (591)
Q Consensus 266 ~~~~~aiGvNC~~p-~~i~~~l~~l~~ 291 (591)
..+++.|-+.|..+ ..+..+++..++
T Consensus 74 ~~Gad~i~vh~~~~~~~~~~~i~~~~~ 100 (206)
T TIGR03128 74 AAGADIVTVLGVADDATIKGAVKAAKK 100 (206)
T ss_pred HcCCCEEEEeccCCHHHHHHHHHHHHH
Confidence 24566666777543 234455554443
No 218
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=46.76 E-value=3.4e+02 Score=27.78 Aligned_cols=111 Identities=18% Similarity=0.207 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCCEEEecc-cCC-------HH--------------HHHHHHHHHH-hcCCCceEEEEEecCCCcccCCC
Q psy17603 196 RPRIQALVEAGADILAIET-IPA-------SK--------------EAQMLCRLLR-EWPHQKAWLSFSCKDDKHISNGE 252 (591)
Q Consensus 196 ~~~i~~l~~aGvD~i~~ET-~~~-------~~--------------Ea~aa~~a~~-~~~~~pv~vSf~~~~~g~l~~G~ 252 (591)
.+.++.+.++|||+|-+-- |++ +. +...+++.+| +.++.|++ -|+..+. -...|
T Consensus 29 ~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~v-lm~Y~N~-i~~~G- 105 (258)
T PRK13111 29 LEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIV-LMTYYNP-IFQYG- 105 (258)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEecccH-HhhcC-
Confidence 3445578899999997654 322 11 1222333344 33466765 4443221 11223
Q ss_pred CHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeeccccc-HHHHHHHH
Q psy17603 253 SFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPAS-KEAQMLCR 323 (591)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~-~E~~~a~~ 323 (591)
+++.++.+.+ .+++++-++=..++.....++.+++. |.+.+.+=|-.+. +.++...+
T Consensus 106 -~e~f~~~~~~---aGvdGviipDLp~ee~~~~~~~~~~~----------gl~~I~lvap~t~~eri~~i~~ 163 (258)
T PRK13111 106 -VERFAADAAE---AGVDGLIIPDLPPEEAEELRAAAKKH----------GLDLIFLVAPTTTDERLKKIAS 163 (258)
T ss_pred -HHHHHHHHHH---cCCcEEEECCCCHHHHHHHHHHHHHc----------CCcEEEEeCCCCCHHHHHHHHH
Confidence 4566666643 56777777766667777777777665 5555554444443 33444433
No 219
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=46.49 E-value=2.6e+02 Score=27.67 Aligned_cols=65 Identities=31% Similarity=0.430 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEec-ccCCH--HHHHHHHHHHHh-cCCCceEEEEEecCCCcccCCCCHHHHHHHH
Q psy17603 187 SEATMAEWHRPRIQALVEAGADILAIE-TIPAS--KEAQMLCRLLRE-WPHQKAWLSFSCKDDKHISNGESFTQVARTC 261 (591)
Q Consensus 187 ~~e~l~~~h~~~i~~l~~aGvD~i~~E-T~~~~--~Ea~aa~~a~~~-~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~ 261 (591)
+.+++.++. +.+.+.|+|.|.+- |++.. .++..+++.+++ +++ .-+.|-+.++ .|.-+..++..+
T Consensus 135 ~~~~~~~~~----~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~--~~l~~H~Hnd----~Gla~An~laA~ 203 (237)
T PF00682_consen 135 DPEELLELA----EALAEAGADIIYLADTVGIMTPEDVAELVRALREALPD--IPLGFHAHND----LGLAVANALAAL 203 (237)
T ss_dssp SHHHHHHHH----HHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTT--SEEEEEEBBT----TS-HHHHHHHHH
T ss_pred cHHHHHHHH----HHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccC--CeEEEEecCC----ccchhHHHHHHH
Confidence 566655554 46777899988665 77754 556667777774 343 5566766553 244444444444
No 220
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=46.17 E-value=4.2e+02 Score=28.77 Aligned_cols=130 Identities=16% Similarity=0.222 Sum_probs=63.1
Q ss_pred CCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHH---cCCCEEE---------ecc-cCCHHHHHHHHHHHHhcCCCceEEE
Q psy17603 173 RDGSEYRGDYVEHVSEATMAEWHRPRIQALVE---AGADILA---------IET-IPASKEAQMLCRLLREWPHQKAWLS 239 (591)
Q Consensus 173 ~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~---aGvD~i~---------~ET-~~~~~Ea~aa~~a~~~~~~~pv~vS 239 (591)
+||..|.| .....+..+.+.+-++.+.+ .|+++++ .+| +++..++.++ +++ -+.|..+.
T Consensus 138 ~DG~~~~g----~~~~~~a~~rl~esL~eI~~~~~~~v~~~iE~Kp~Ep~~y~t~~~~~~~~l~l---~~~-lg~~~~v~ 209 (378)
T TIGR02635 138 ADGTNYPG----QDDFRSRKDRLEESLAEVYEHLGADMRLLIEYKFFEPAFYHTDIPDWGTAYAL---SEK-LGERALVL 209 (378)
T ss_pred CCcCcCCc----ccCHHHHHHHHHHHHHHHHHhCcCCCEEEEecCCCCCceeeecCCcHHHHHHH---HHh-hCCCceEE
Confidence 46666665 12344444444444444433 2666654 123 4444454444 333 23455555
Q ss_pred EEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecC------------CCchhhHHHHHHHHhcCCceEEecCCCCccc
Q psy17603 240 FSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNC------------VRPLMVSSLIEQLKTENIPLVVYPNSGEHIL 307 (591)
Q Consensus 240 f~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC------------~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l 307 (591)
+ +.|+..-|+++++.+..+.. ...+..+=+|= ..|..+..+++.+...... + -.++---.+
T Consensus 210 l---D~GH~~~~Enia~~~a~l~~--~~kL~hiH~nd~~~~Ddd~~vG~~d~~e~~~il~el~~~~~~-~-~~~~~~~~~ 282 (378)
T TIGR02635 210 V---DTGHHAQGTNIEFIVATLLD--EKKLGGFHFNSRKYADDDLTVGAINPYELFLIFKEIVRAGRD-P-EDSASDVAL 282 (378)
T ss_pred e---ecCccCCCCCHHHHHHHHhh--CCceeEEEecCCCcccCCCceecCCHHHHHHHHHHHHhcCCC-C-cccccceEE
Confidence 5 56666779999997766642 23344444542 1244555666666543100 0 000001145
Q ss_pred eeecccccHH
Q psy17603 308 AIETIPASKE 317 (591)
Q Consensus 308 ~iET~~d~~E 317 (591)
-|-||+....
T Consensus 283 ~lD~f~~~~~ 292 (378)
T TIGR02635 283 MLDQCHNLEP 292 (378)
T ss_pred EEecCccccc
Confidence 6777777555
No 221
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=46.16 E-value=3.2e+02 Score=28.45 Aligned_cols=64 Identities=13% Similarity=0.075 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEe
Q psy17603 195 HRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGV 274 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGv 274 (591)
|..-++.|.+.|||+|- ||--... +.......|..-+.|++ ++=.+++++.+... .+++-|+.
T Consensus 78 h~~Ea~~L~~~GvDiID-eTe~lrP-ade~~~~~K~~f~vpfm-----------ad~~~l~EAlrai~----~GadmI~T 140 (287)
T TIGR00343 78 HFVEAQILEALGVDYID-ESEVLTP-ADWTFHIDKKKFKVPFV-----------CGARDLGEALRRIN----EGAAMIRT 140 (287)
T ss_pred HHHHHHHHHHcCCCEEE-ccCCCCc-HHHHHHHHHHHcCCCEE-----------ccCCCHHHHHHHHH----CCCCEEec
Confidence 45567889999999994 7753221 34455555632256655 23356888888773 45566665
Q ss_pred c
Q psy17603 275 N 275 (591)
Q Consensus 275 N 275 (591)
-
T Consensus 141 t 141 (287)
T TIGR00343 141 K 141 (287)
T ss_pred c
Confidence 4
No 222
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=45.48 E-value=1.6e+02 Score=28.90 Aligned_cols=138 Identities=12% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCcEEeecCCCCHHHHHHHHHHhhhcccCccccccccccCCCCchhhhhhhCCcchhhcchhhhhCCCC
Q psy17603 372 VDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKGSQT 451 (591)
Q Consensus 372 ~~~~~~~~~~~Gv~~VGgcCgtgP~~i~~l~~~l~~~~~~~~~~~pd~~~~~plws~~~~~~~P~~~~~~h~~~i~aG~~ 451 (591)
+..+++....-|+..|=.| +|++|+++.+ .-..+
T Consensus 1 m~~mA~Aa~~gGA~giR~~---~~~dI~aik~-------------------------------------------~v~lP 34 (192)
T PF04131_consen 1 MARMAKAAEEGGAVGIRAN---GVEDIRAIKK-------------------------------------------AVDLP 34 (192)
T ss_dssp HHHHHHHHHHCT-SEEEEE---SHHHHHHHHT-------------------------------------------TB-S-
T ss_pred CHHHHHHHHHCCceEEEcC---CHHHHHHHHH-------------------------------------------hcCCC
Q ss_pred ccc--ccccCCCCcccccCCcchhHHHHHHHHHcCCcEEE--eecCCcHHHHHHHHhcccccCCCCCCCCCcHHHHHHHh
Q psy17603 452 NDF--LRDYNSPNLWIDRDLCEPVDKYVTDWLDEGVALVG--GCCRTYAEDTLHMKHRLDDWDDKHISNGESFTQVARTC 527 (591)
Q Consensus 452 v~~--~~~y~~~~~~l~~~~~e~~a~~~~~~~~~G~~~vg--GCcgttp~~i~~l~~~~~~~d~~~l~dG~~l~~~~~~~ 527 (591)
|++ ...|..+.-|... ..+.++++++.|+.+|+ ++-.+.|+.+..+-+.++..---.+.|=.+++|+....
T Consensus 35 IIGi~K~~y~~~~V~ITP-----T~~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~ 109 (192)
T PF04131_consen 35 IIGIIKRDYPDSDVYITP-----TLKEVDALAEAGADIIALDATDRPRPETLEELIREIKEKYQLVMADISTLEEAINAA 109 (192)
T ss_dssp EEEE-B-SBTTSS--BS------SHHHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHH
T ss_pred EEEEEeccCCCCCeEECC-----CHHHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHH
Q ss_pred hhcCCCCeeEEEEcCCChhhHH-------HHHHHhhhcCCcEEE
Q psy17603 528 YNMNPDQLIAVGVNCVRPLMVS-------PLIEQLKTENIPLVV 564 (591)
Q Consensus 528 ~~~~~~~~~avGiNC~~p~~v~-------~~i~~l~~~~~pl~v 564 (591)
.-.++.||---+++..-. ++++.|...+.|+++
T Consensus 110 ----~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~~~pvIa 149 (192)
T PF04131_consen 110 ----ELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQADVPVIA 149 (192)
T ss_dssp ----HTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHTTSEEEE
T ss_pred ----HcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhCCCcEee
No 223
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=45.46 E-value=2.6e+02 Score=28.75 Aligned_cols=171 Identities=15% Similarity=0.142 Sum_probs=91.7
Q ss_pred cceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEee----------------------cCCCCHHHHHHH
Q psy17603 344 IPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGG----------------------CCRTYAEDTLHM 401 (591)
Q Consensus 344 ~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGg----------------------cCgtgP~~i~~l 401 (591)
..++.|...|.+ +.+...+.++.+.+.|+++|-+ .=|++.+++.++
T Consensus 10 ~~li~yitaG~P------------~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~ 77 (259)
T PF00290_consen 10 KALIPYITAGYP------------DLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFEL 77 (259)
T ss_dssp TEEEEEEETTSS------------SHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHH
T ss_pred CeEEEEEeCCCC------------CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
Confidence 457777777643 2345666666667777777543 234567777777
Q ss_pred HHHhhhcccCccccccccccCCCCchhhhhhhCCcchhhcc-hhhh----hCCCCcccccccCCCCcccccCCcchhHHH
Q psy17603 402 KHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQTH-RDFI----KGSQTNDFLRDYNSPNLWIDRDLCEPVDKY 476 (591)
Q Consensus 402 ~~~l~~~~~~~~~~~pd~~~~~plws~~~~~~~P~~~~~~h-~~~i----~aG~~v~~~~~y~~~~~~l~~~~~e~~a~~ 476 (591)
++.++..... .|+ .++++-|.+.+-- ..|+ ++|. .+...-..+ +|+-.+.
T Consensus 78 ~~~ir~~~~~-----------~pi----vlm~Y~N~i~~~G~e~F~~~~~~aGv--dGlIipDLP--------~ee~~~~ 132 (259)
T PF00290_consen 78 VKEIRKKEPD-----------IPI----VLMTYYNPIFQYGIERFFKEAKEAGV--DGLIIPDLP--------PEESEEL 132 (259)
T ss_dssp HHHHHHHCTS-----------SEE----EEEE-HHHHHHH-HHHHHHHHHHHTE--EEEEETTSB--------GGGHHHH
T ss_pred HHHHhccCCC-----------CCE----EEEeeccHHhccchHHHHHHHHHcCC--CEEEEcCCC--------hHHHHHH
Confidence 7777732111 122 1444444443221 1233 3442 111111111 1222333
Q ss_pred HHHHHHcCCcEEEeecCCc-HHHHHHHHhccccc---------CCCCCCCCCcHHHHHHHhhhcCCCCeeEEEEcCCChh
Q psy17603 477 VTDWLDEGVALVGGCCRTY-AEDTLHMKHRLDDW---------DDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPL 546 (591)
Q Consensus 477 ~~~~~~~G~~~vgGCcgtt-p~~i~~l~~~~~~~---------d~~~l~dG~~l~~~~~~~~~~~~~~~~avGiNC~~p~ 546 (591)
.....+.|..+|-=.-++| ++.|+.+.+.-.+| .+.....-..+.+.++.++.. ...+.++|+==+.++
T Consensus 133 ~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~-~~~Pv~vGFGI~~~e 211 (259)
T PF00290_consen 133 REAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKH-TDLPVAVGFGISTPE 211 (259)
T ss_dssp HHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHT-TSS-EEEESSS-SHH
T ss_pred HHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhh-cCcceEEecCCCCHH
Confidence 3334468998888777755 55777888776666 222233334577777777753 357899999999999
Q ss_pred hHHHHH
Q psy17603 547 MVSPLI 552 (591)
Q Consensus 547 ~v~~~i 552 (591)
++..+.
T Consensus 212 ~~~~~~ 217 (259)
T PF00290_consen 212 QAKKLA 217 (259)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999886
No 224
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=45.26 E-value=3.6e+02 Score=27.71 Aligned_cols=29 Identities=7% Similarity=0.310 Sum_probs=25.6
Q ss_pred hccCHHHHHHHHHHHHHHhcceeeccccc
Q psy17603 34 LATAKDAVVQTHRDFIKAGADIVMTNSYQ 62 (591)
Q Consensus 34 l~~~Pe~v~~vH~~yl~AGAdiI~TnTy~ 62 (591)
.+++++.+.++=+.--++|.+++...+|-
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~k 64 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFK 64 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeec
Confidence 46788999998888889999999999994
No 225
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=44.97 E-value=3.8e+02 Score=27.82 Aligned_cols=76 Identities=8% Similarity=-0.033 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEecc-cC-----CHHHHHHHHHHHH-hcCC-CceEEEEEecCCCcccCCCCHHH
Q psy17603 185 HVSEATMAEWHRPRIQALVEAGADILAIET-IP-----ASKEAQMLCRLLR-EWPH-QKAWLSFSCKDDKHISNGESFTQ 256 (591)
Q Consensus 185 ~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET-~~-----~~~Ea~aa~~a~~-~~~~-~pv~vSf~~~~~g~l~~G~~~~~ 256 (591)
.++++.++ +.++.+++.|||.|++-- .+ +.+|-+.+++.+. ...+ .|+++.. .+.+..+
T Consensus 17 ~iD~~~l~----~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv---------~~~~t~~ 83 (294)
T TIGR02313 17 DIDEEALR----ELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGT---------GALNHDE 83 (294)
T ss_pred CcCHHHHH----HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEEC---------CcchHHH
Confidence 46666654 556677889999876543 22 2355555555443 3333 5776444 1234566
Q ss_pred HHHHHHhhCCCCeEEEE
Q psy17603 257 VARTCYNMNPDQLIAVG 273 (591)
Q Consensus 257 ~~~~~~~~~~~~~~aiG 273 (591)
+++........+++++.
T Consensus 84 ai~~a~~A~~~Gad~v~ 100 (294)
T TIGR02313 84 TLELTKFAEEAGADAAM 100 (294)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 66655432334444433
No 226
>PRK12999 pyruvate carboxylase; Reviewed
Probab=44.64 E-value=7.4e+02 Score=31.14 Aligned_cols=163 Identities=13% Similarity=0.135 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhc-CC---CceEEEEEecCCCcccCCCCHHHHHHHHHhhCC---CCeEEEEecCCC----chhhHH-HH
Q psy17603 219 KEAQMLCRLLREW-PH---QKAWLSFSCKDDKHISNGESFTQVARTCYNMNP---DQLIAVGVNCVR----PLMVSS-LI 286 (591)
Q Consensus 219 ~Ea~aa~~a~~~~-~~---~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~---~~~~aiGvNC~~----p~~i~~-~l 286 (591)
.+...++..+.+. ++ .-+|-.-+|.-.-+. .+++..+.++.+.+.-+ .+...-|.|=++ |..+.. .+
T Consensus 555 ~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~-l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i 633 (1146)
T PRK12999 555 KDLLRIAPATARLLPNLFSLEMWGGATFDVAYRF-LKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFV 633 (1146)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccc-cCCCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHHH
Confidence 4556666666643 34 345533333222222 35666666666654222 233444445433 444433 35
Q ss_pred HHHHhcCCceEEecCCCCccc-eeecccccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecC
Q psy17603 287 EQLKTENIPLVVYPNSGEHIL-AIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWID 365 (591)
Q Consensus 287 ~~l~~~~~~i~~l~~aG~D~l-~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~ 365 (591)
+...+ .|+|++ ++-.+.|+..++.+++.+++.+.. . ..-++|- |...|... .
T Consensus 634 ~~a~~----------~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~-~----------~~~i~yt--g~~~d~~~----~ 686 (1146)
T PRK12999 634 REAAA----------AGIDVFRIFDSLNWVENMRVAIDAVRETGKI-A----------EAAICYT--GDILDPAR----A 686 (1146)
T ss_pred HHHHH----------cCCCEEEEeccCChHHHHHHHHHHHHHcCCe-E----------EEEEEEE--ecCCCCCC----C
Confidence 55443 478877 445677788899999999876421 0 0112221 11111111 1
Q ss_pred CCChHHHHHHHHHHHhcCCcEEeecCCC---CHHHHHHHHHHhhhcc
Q psy17603 366 RDLCEPVDKYVTDWLDEGVALVGGCCRT---YAEDTLHMKHRLDDWV 409 (591)
Q Consensus 366 ~~~~~~~~~~~~~~~~~Gv~~VGgcCgt---gP~~i~~l~~~l~~~~ 409 (591)
..+++.+.+.++++.++|++.|.++=.. .|..+..+++.|++..
T Consensus 687 ~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~ 733 (1146)
T PRK12999 687 KYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEV 733 (1146)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc
Confidence 1346788888999999999888665332 6999999999988753
No 227
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=44.48 E-value=4.1e+02 Score=28.09 Aligned_cols=129 Identities=9% Similarity=0.053 Sum_probs=68.5
Q ss_pred CCCCHHHHH---HHHHHHHHHHHHcCCCEEEeccc--------CC-------------H----HHHHHHHHHHHhcC--C
Q psy17603 184 EHVSEATMA---EWHRPRIQALVEAGADILAIETI--------PA-------------S----KEAQMLCRLLREWP--H 233 (591)
Q Consensus 184 ~~~~~e~l~---~~h~~~i~~l~~aGvD~i~~ET~--------~~-------------~----~Ea~aa~~a~~~~~--~ 233 (591)
..++.+++. +.|.+-++...++|.|.|-+.-- -+ + .-...+++++|+.. +
T Consensus 137 ~~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d 216 (338)
T cd04733 137 RAMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPG 216 (338)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 356776665 55666666677889999966532 11 1 12345666666543 3
Q ss_pred CceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCC---Cch--------------hhHHHHHHHHhcCCce
Q psy17603 234 QKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCV---RPL--------------MVSSLIEQLKTENIPL 296 (591)
Q Consensus 234 ~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~---~p~--------------~i~~~l~~l~~~~~~i 296 (591)
.|+.+-++. ......|.+++++++.+......+++.|-|-.. .|. ......+.+++..
T Consensus 217 ~~v~vris~--~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v--- 291 (338)
T cd04733 217 FPVGIKLNS--ADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT--- 291 (338)
T ss_pred CeEEEEEcH--HHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc---
Confidence 456555543 222345667777766554333344554443211 111 0123444554431
Q ss_pred EEecCCCCccceeecccccHHHHHHHH
Q psy17603 297 VVYPNSGEHILAIETIPASKEAQMLCR 323 (591)
Q Consensus 297 ~~l~~aG~D~l~iET~~d~~E~~~a~~ 323 (591)
.+.++..|.+.+.+++..+++
T Consensus 292 ------~iPVi~~G~i~t~~~a~~~l~ 312 (338)
T cd04733 292 ------KTPLMVTGGFRTRAAMEQALA 312 (338)
T ss_pred ------CCCEEEeCCCCCHHHHHHHHH
Confidence 356666777777777776664
No 228
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=43.66 E-value=3.2e+02 Score=27.17 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcC-CCEEEe-cccCCHHHH----HHHHHHHHhcCCCceEEEE
Q psy17603 195 HRPRIQALVEAG-ADILAI-ETIPASKEA----QMLCRLLREWPHQKAWLSF 240 (591)
Q Consensus 195 h~~~i~~l~~aG-vD~i~~-ET~~~~~Ea----~aa~~a~~~~~~~pv~vSf 240 (591)
+.++++..+++| +++|.+ |=--+-.|. +.+....++ .+.+++|.-
T Consensus 28 ~~~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~~-~gv~liINd 78 (221)
T PRK06512 28 LAKLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQE-AGAAALIAG 78 (221)
T ss_pred HHHHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHHH-hCCEEEEeC
Confidence 556888899999 798766 222233343 333333344 367888754
No 229
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=43.64 E-value=1.1e+02 Score=32.32 Aligned_cols=31 Identities=10% Similarity=0.002 Sum_probs=23.7
Q ss_pred HhcCCcEEeec-CCCCHHH-------HHHHHHHhhhccc
Q psy17603 380 LDEGVALVGGC-CRTYAED-------TLHMKHRLDDWVS 410 (591)
Q Consensus 380 ~~~Gv~~VGgc-CgtgP~~-------i~~l~~~l~~~~~ 410 (591)
.++|+++|=+| ++++|+- +..+++.+...+.
T Consensus 86 ~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd 124 (319)
T PRK04452 86 EEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVD 124 (319)
T ss_pred HHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCC
Confidence 48899999999 7887753 7778887766543
No 230
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=43.51 E-value=98 Score=32.24 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=24.4
Q ss_pred HHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHh
Q psy17603 197 PRIQALVEAGADILAIETIPASKEAQMLCRLLRE 230 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~ 230 (591)
+|++..+++|+|+|.+..|+ .++++.+++.+++
T Consensus 200 eqa~ea~~agaDiI~LDn~~-~e~l~~av~~~~~ 232 (284)
T PRK06096 200 KEAIAALRAQPDVLQLDKFS-PQQATEIAQIAPS 232 (284)
T ss_pred HHHHHHHHcCCCEEEECCCC-HHHHHHHHHHhhc
Confidence 44555678899999999885 6777777777663
No 231
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=43.24 E-value=94 Score=31.13 Aligned_cols=64 Identities=23% Similarity=0.430 Sum_probs=0.0
Q ss_pred hhccccCCCCcceeEeeccCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHH
Q psy17603 147 WHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCR 226 (591)
Q Consensus 147 ~~~~~~~~~~~~~~VagsiGP~ga~l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~ 226 (591)
|+.... ........||-. +.+++.+.=+ .|.+.|+|+|++..|+...+.|..+.
T Consensus 145 W~~l~~------~~~~a~asPy~~----------------~~~~l~~Aa~----~L~~~gadlIvLDCmGYt~~~r~~~~ 198 (221)
T PF07302_consen 145 WQPLGN------PVVVAAASPYEG----------------DEEELAAAAR----ELAEQGADLIVLDCMGYTQEMRDIVQ 198 (221)
T ss_pred HHhcCC------CeEEEEeCCCCC----------------CHHHHHHHHH----HHHhcCCCEEEEECCCCCHHHHHHHH
Q ss_pred HHHhcCCCceEEE
Q psy17603 227 LLREWPHQKAWLS 239 (591)
Q Consensus 227 a~~~~~~~pv~vS 239 (591)
-.- ++||+.|
T Consensus 199 ~~~---g~PVlLs 208 (221)
T PF07302_consen 199 RAL---GKPVLLS 208 (221)
T ss_pred HHh---CCCEEeH
No 232
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=42.91 E-value=84 Score=32.35 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=24.2
Q ss_pred HHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEE
Q psy17603 199 IQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSF 240 (591)
Q Consensus 199 i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf 240 (591)
++...++|+|+|.+..|+ .++.+.+++.++. +.|+.++.
T Consensus 195 a~~A~~~gaDyI~ld~~~-~e~l~~~~~~~~~--~ipi~AiG 233 (268)
T cd01572 195 LKEALEAGADIIMLDNMS-PEELREAVALLKG--RVLLEASG 233 (268)
T ss_pred HHHHHHcCCCEEEECCcC-HHHHHHHHHHcCC--CCcEEEEC
Confidence 334456788888888875 5666666555432 35655554
No 233
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=42.88 E-value=36 Score=35.00 Aligned_cols=45 Identities=29% Similarity=0.299 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceE
Q psy17603 187 SEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAW 237 (591)
Q Consensus 187 ~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~ 237 (591)
+.+++.+ -.+++++|.++|+|.|.+|-+|. ++++.+.+.+ +.|++
T Consensus 156 t~~~a~~-~i~ra~a~~eAGA~~i~lE~v~~-~~~~~i~~~l----~iP~i 200 (264)
T PRK00311 156 DEEAAEK-LLEDAKALEEAGAFALVLECVPA-ELAKEITEAL----SIPTI 200 (264)
T ss_pred CHHHHHH-HHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhC----CCCEE
Confidence 4444444 45688899999999999999977 5666555543 35654
No 234
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=42.88 E-value=1.2e+02 Score=32.50 Aligned_cols=91 Identities=11% Similarity=0.147 Sum_probs=48.8
Q ss_pred CCCCHHHHH---HHHHHHHHHHHHcCCCEEEeccc----------C--C---------H-HH---HHHHHHHHHhcCC--
Q psy17603 184 EHVSEATMA---EWHRPRIQALVEAGADILAIETI----------P--A---------S-KE---AQMLCRLLREWPH-- 233 (591)
Q Consensus 184 ~~~~~e~l~---~~h~~~i~~l~~aGvD~i~~ET~----------~--~---------~-~E---a~aa~~a~~~~~~-- 233 (591)
..++.+++. +.|.+-++...++|.|.|-+.-- | + + .. +..+++++|+..+
T Consensus 132 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~ 211 (353)
T cd04735 132 RELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKH 211 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccc
Confidence 346666665 55666666667789999977631 1 1 0 11 3345555554333
Q ss_pred --CceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEe
Q psy17603 234 --QKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGV 274 (591)
Q Consensus 234 --~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGv 274 (591)
.++.|.+.+..+.....|.++++.++.+......+++.|.|
T Consensus 212 ~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~V 254 (353)
T cd04735 212 ADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHI 254 (353)
T ss_pred cCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 45566666655444455667766654443222234444444
No 235
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=42.35 E-value=3.8e+02 Score=27.12 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHhcCCcEEeecCCC
Q psy17603 369 CEPVDKYVTDWLDEGVALVGGCCRT 393 (591)
Q Consensus 369 ~~~~~~~~~~~~~~Gv~~VGgcCgt 393 (591)
.+++.+.++++.+.|++ |.+++.
T Consensus 206 ~~~~~~~i~~~~~aGa~--Gia~g~ 228 (258)
T TIGR01949 206 DREFLQMIKDAMEAGAA--GVAVGR 228 (258)
T ss_pred HHHHHHHHHHHHHcCCc--EEehhh
Confidence 35667777777889998 777664
No 236
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=42.20 E-value=45 Score=33.34 Aligned_cols=104 Identities=22% Similarity=0.357 Sum_probs=56.4
Q ss_pred HHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCC-C------cccCCCCHHHHHHHHHhhCCCCe
Q psy17603 197 PRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDD-K------HISNGESFTQVARTCYNMNPDQL 269 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~-g------~l~~G~~~~~~~~~~~~~~~~~~ 269 (591)
+.++.+++.|+|-+++.|.. +.....+-+++++|....+++|+.+..+ . ...++.++.+.++.+.+.....+
T Consensus 86 ed~~~ll~~Ga~~Vvigt~~-~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~i 164 (229)
T PF00977_consen 86 EDAERLLDAGADRVVIGTEA-LEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEI 164 (229)
T ss_dssp HHHHHHHHTT-SEEEESHHH-HHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHhCCCEEEeChHH-hhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEE
Confidence 34556778999988877732 1112234445566666689999998764 1 11234568899988865433333
Q ss_pred EEEEecC----CCchhhHHHHHHHHhcCCceEEecCCCC
Q psy17603 270 IAVGVNC----VRPLMVSSLIEQLKTENIPLVVYPNSGE 304 (591)
Q Consensus 270 ~aiGvNC----~~p~~i~~~l~~l~~~~~~i~~l~~aG~ 304 (591)
...-++. .+|.. ++++.+.+.. .+.....+|+
T Consensus 165 i~tdi~~dGt~~G~d~--~~~~~l~~~~-~~~viasGGv 200 (229)
T PF00977_consen 165 ILTDIDRDGTMQGPDL--ELLKQLAEAV-NIPVIASGGV 200 (229)
T ss_dssp EEEETTTTTTSSS--H--HHHHHHHHHH-SSEEEEESS-
T ss_pred EEeeccccCCcCCCCH--HHHHHHHHHc-CCCEEEecCC
Confidence 3333333 33442 4455554322 3455666776
No 237
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=42.19 E-value=3.7e+02 Score=26.94 Aligned_cols=110 Identities=13% Similarity=0.130 Sum_probs=57.5
Q ss_pred HHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCC
Q psy17603 225 CRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGE 304 (591)
Q Consensus 225 ~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~ 304 (591)
+..+++ .+.|+.+++.-. +-+.+.++++.+. . ..++|-+||.-|..... + . .+|.
T Consensus 65 ~~~~~~-~~~p~~vqi~g~------~~~~~~~aa~~~~---~-~~~~ielN~gCP~~~v~--~---~---------g~G~ 119 (233)
T cd02911 65 IKALKD-SNVLVGVNVRSS------SLEPLLNAAALVA---K-NAAILEINAHCRQPEMV--E---A---------GAGE 119 (233)
T ss_pred HHHhhc-cCCeEEEEecCC------CHHHHHHHHHHHh---h-cCCEEEEECCCCcHHHh--c---C---------Ccch
Confidence 334444 356888887211 1123444555442 2 34789999976653110 0 0 1232
Q ss_pred ccceeecccccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCC
Q psy17603 305 HILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGV 384 (591)
Q Consensus 305 D~l~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv 384 (591)
.+ +.+.+.+...++++++. ++||.+....|. + .+..+.++.+.+.|+
T Consensus 120 ~L-----l~~p~~l~eiv~avr~~--------------~~pVsvKir~g~--~------------~~~~~la~~l~~aG~ 166 (233)
T cd02911 120 AL-----LKDPERLSEFIKALKET--------------GVPVSVKIRAGV--D------------VDDEELARLIEKAGA 166 (233)
T ss_pred HH-----cCCHHHHHHHHHHHHhc--------------CCCEEEEEcCCc--C------------cCHHHHHHHHHHhCC
Confidence 22 23555666667777653 367776544331 1 123445556678999
Q ss_pred cEEeecCC
Q psy17603 385 ALVGGCCR 392 (591)
Q Consensus 385 ~~VGgcCg 392 (591)
++|-+-++
T Consensus 167 d~ihv~~~ 174 (233)
T cd02911 167 DIIHVDAM 174 (233)
T ss_pred CEEEECcC
Confidence 98876544
No 238
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=42.11 E-value=4e+02 Score=27.33 Aligned_cols=85 Identities=11% Similarity=-0.052 Sum_probs=53.5
Q ss_pred CCCccceeecc-cccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHH
Q psy17603 302 SGEHILAIETI-PASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWL 380 (591)
Q Consensus 302 aG~D~l~iET~-~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~ 380 (591)
.|+|.+-+-+. ++++.++.+++.+|+.+ .-+.++.. ..+ . ...+++.+.+.++++.
T Consensus 103 ~g~~~iri~~~~~~~~~~~~~i~~ak~~G--------------~~v~~~i~--~~~---~----~~~~~~~~~~~~~~~~ 159 (275)
T cd07937 103 NGIDIFRIFDALNDVRNLEVAIKAVKKAG--------------KHVEGAIC--YTG---S----PVHTLEYYVKLAKELE 159 (275)
T ss_pred cCCCEEEEeecCChHHHHHHHHHHHHHCC--------------CeEEEEEE--ecC---C----CCCCHHHHHHHHHHHH
Confidence 46666554433 45666777788887654 11111111 000 0 1235678888999999
Q ss_pred hcCCcEEeecCCC---CHHHHHHHHHHhhhcc
Q psy17603 381 DEGVALVGGCCRT---YAEDTLHMKHRLDDWV 409 (591)
Q Consensus 381 ~~Gv~~VGgcCgt---gP~~i~~l~~~l~~~~ 409 (591)
+.|++.|.++=.. .|.++..+++.+++..
T Consensus 160 ~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 191 (275)
T cd07937 160 DMGADSICIKDMAGLLTPYAAYELVKALKKEV 191 (275)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 9999888776433 6899999999887653
No 239
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=42.10 E-value=4e+02 Score=27.29 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=32.5
Q ss_pred CChHHHHHHHHHHHhcCCcEEeecC---CCCHHHHHHHHHHhhhc
Q psy17603 367 DLCEPVDKYVTDWLDEGVALVGGCC---RTYAEDTLHMKHRLDDW 408 (591)
Q Consensus 367 ~~~~~~~~~~~~~~~~Gv~~VGgcC---gtgP~~i~~l~~~l~~~ 408 (591)
.+++.+.+.++++.+.|++.|..|= ...|..+..+++.+++.
T Consensus 148 ~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~ 192 (273)
T cd07941 148 ANPEYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRER 192 (273)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 3567788888888999998876552 14799999999988765
No 240
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=42.06 E-value=4.4e+02 Score=27.80 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCCEEEecccC-C---------H-HHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHh
Q psy17603 196 RPRIQALVEAGADILAIETIP-A---------S-KEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYN 263 (591)
Q Consensus 196 ~~~i~~l~~aGvD~i~~ET~~-~---------~-~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~ 263 (591)
.+.++.+.++|+|.|-++-.. . . .....+++.+++..+.|+++-++-. + +.+.+.++.+.+
T Consensus 117 ~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~----~---~~~~~~a~~l~~ 188 (334)
T PRK07565 117 VDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPY----F---SNLANMAKRLDA 188 (334)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCC----c---hhHHHHHHHHHH
Confidence 344556667899999886421 1 1 1244566677766678999887321 1 245666666643
No 241
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=42.00 E-value=2.5e+02 Score=29.09 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHcCCC-EE-EecccCCH---------HHHHHHHHHHHhcCCCc-eEEEEEecCC
Q psy17603 190 TMAEWHRPRIQALVEAGAD-IL-AIETIPAS---------KEAQMLCRLLREWPHQK-AWLSFSCKDD 245 (591)
Q Consensus 190 ~l~~~h~~~i~~l~~aGvD-~i-~~ET~~~~---------~Ea~aa~~a~~~~~~~p-v~vSf~~~~~ 245 (591)
.+.++-.+.++...++|+| .| +..|++.. .++..+++.+++..+.| +-+.+-+.++
T Consensus 146 ~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~ 213 (279)
T cd07947 146 FVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHND 213 (279)
T ss_pred chHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCC
Confidence 3445555555566679999 45 77888743 46777777777533333 4466766553
No 242
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=41.90 E-value=2.6e+02 Score=28.31 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=45.1
Q ss_pred HHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecC--------------CCcccCCCCHHHHHHHHHhhCC
Q psy17603 201 ALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKD--------------DKHISNGESFTQVARTCYNMNP 266 (591)
Q Consensus 201 ~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~--------------~g~l~~G~~~~~~~~~~~~~~~ 266 (591)
.++.+|+|=+.++| +.+....-+-++.++|...-++|+...+- +|+-..|-+.-+.++.+. .
T Consensus 91 ~ll~aGADKVSINs-aAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e---~ 166 (256)
T COG0107 91 KLLRAGADKVSINS-AAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVE---E 166 (256)
T ss_pred HHHHcCCCeeeeCh-hHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHH---H
Confidence 46679999999999 45555566777777776666777765532 223334444445555543 2
Q ss_pred CCeEEEEecCCC
Q psy17603 267 DQLIAVGVNCVR 278 (591)
Q Consensus 267 ~~~~aiGvNC~~ 278 (591)
.++--|-+||..
T Consensus 167 ~GAGEIlLtsmD 178 (256)
T COG0107 167 LGAGEILLTSMD 178 (256)
T ss_pred cCCceEEEeeec
Confidence 344445667633
No 243
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=41.54 E-value=4e+02 Score=27.91 Aligned_cols=63 Identities=13% Similarity=0.016 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEe
Q psy17603 195 HRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGV 274 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGv 274 (591)
|..-++.|.+.|||+|- ||---.. +-......|..-+.|++ .+=.+++++.+... .+++-|+.
T Consensus 85 h~~Ea~~L~~~GvDiID-~Te~lrp-ad~~~~~~K~~f~~~fm-----------ad~~~l~EAlrai~----~GadmI~T 147 (293)
T PRK04180 85 HFVEAQILEALGVDYID-ESEVLTP-ADEEYHIDKWDFTVPFV-----------CGARNLGEALRRIA----EGAAMIRT 147 (293)
T ss_pred HHHHHHHHHHcCCCEEe-ccCCCCc-hHHHHHHHHHHcCCCEE-----------ccCCCHHHHHHHHH----CCCCeeec
Confidence 55667889999999995 7752211 33445555532255654 23356888888763 35555554
No 244
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=41.36 E-value=4e+02 Score=27.05 Aligned_cols=156 Identities=13% Similarity=0.160 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEE-----EecccCCHHHHHHHHHHHHh-cCCCceEEEEEecCCCcccCCCCHHHHHHH
Q psy17603 187 SEATMAEWHRPRIQALVEAGADIL-----AIETIPASKEAQMLCRLLRE-WPHQKAWLSFSCKDDKHISNGESFTQVART 260 (591)
Q Consensus 187 ~~e~l~~~h~~~i~~l~~aGvD~i-----~~ET~~~~~Ea~aa~~a~~~-~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~ 260 (591)
+.+++....+ .+.+.|+|++ .++.+.+.......+..+++ +.+.|+++++....+|-...+. -++-
T Consensus 26 ~~~e~~~~~~----~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~-~~~~--- 97 (253)
T PRK02412 26 TLEEVLAEAL----AISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEIALS-DEEY--- 97 (253)
T ss_pred CHHHHHHHHH----HHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCC-HHHH---
Confidence 5666654443 3445688887 23555555555555555553 4578999888654433211121 1111
Q ss_pred HHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCC-CccceeecccccHHHHHHHHHHhhcccccccccccc
Q psy17603 261 CYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSG-EHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSC 339 (591)
Q Consensus 261 ~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG-~D~l~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~ 339 (591)
..+++.+. ..| +|.+-+|-..+.+..+..+..+++.
T Consensus 98 ----------------------~~ll~~~~----------~~~~~d~vDiEl~~~~~~~~~l~~~~~~~----------- 134 (253)
T PRK02412 98 ----------------------LALIKAVI----------KSGLPDYIDVELFSGKDVVKEMVAFAHEH----------- 134 (253)
T ss_pred ----------------------HHHHHHHH----------hcCCCCEEEEeccCChHHHHHHHHHHHHc-----------
Confidence 11222221 124 6777777544444455555555432
Q ss_pred CCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCCC-CHHHHHHHHHHhh
Q psy17603 340 KTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRT-YAEDTLHMKHRLD 406 (591)
Q Consensus 340 ~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCgt-gP~~i~~l~~~l~ 406 (591)
+..++++... |+ + ..+.+++.+..++....|++++=.-+-. ++.+...+.+...
T Consensus 135 ---~~kvI~S~H~---f~---~----tP~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~ 189 (253)
T PRK02412 135 ---GVKVVLSYHD---FE---K----TPPKEEIVERLRKMESLGADIVKIAVMPQSEQDVLTLLNATR 189 (253)
T ss_pred ---CCEEEEeeCC---CC---C----CcCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHH
Confidence 2345543211 10 0 0112456677777788899888877642 5666666665443
No 245
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=41.33 E-value=1.7e+02 Score=30.92 Aligned_cols=66 Identities=9% Similarity=0.115 Sum_probs=43.8
Q ss_pred CHHHHHHHHHhh--CCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecc--------cccHHHHHHH
Q psy17603 253 SFTQVARTCYNM--NPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETI--------PASKEAQMLC 322 (591)
Q Consensus 253 ~~~~~~~~~~~~--~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~--------~d~~E~~~a~ 322 (591)
++.++++.+... ......-|-|-|...+.+..+++.+... .+|+|++++..| .+.++++.++
T Consensus 185 ~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~--------~agaDiImLDnm~~~~~~~~~~~e~l~~av 256 (308)
T PLN02716 185 GITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDT--------KTSLTRVMLDNMVVPLENGDVDVSMLKEAV 256 (308)
T ss_pred CHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccc--------cCCCCEEEeCCCcccccccCCCHHHHHHHH
Confidence 477787777541 1111244778887777766665543332 279999999999 3788888888
Q ss_pred HHHh
Q psy17603 323 RLLR 326 (591)
Q Consensus 323 ~~~~ 326 (591)
..++
T Consensus 257 ~~~~ 260 (308)
T PLN02716 257 ELIN 260 (308)
T ss_pred HhhC
Confidence 7654
No 246
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=41.23 E-value=4.1e+02 Score=27.17 Aligned_cols=42 Identities=12% Similarity=-0.043 Sum_probs=32.5
Q ss_pred CChHHHHHHHHHHHhcCCcEEeecCCC---CHHHHHHHHHHhhhc
Q psy17603 367 DLCEPVDKYVTDWLDEGVALVGGCCRT---YAEDTLHMKHRLDDW 408 (591)
Q Consensus 367 ~~~~~~~~~~~~~~~~Gv~~VGgcCgt---gP~~i~~l~~~l~~~ 408 (591)
.+++.+.+.++.+.+.|++.|..|=.+ .|..+..+++.+++.
T Consensus 138 ~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~ 182 (262)
T cd07948 138 SDLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGV 182 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHh
Confidence 446778888888889998887665433 699999999888764
No 247
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=41.13 E-value=3.4e+02 Score=28.00 Aligned_cols=43 Identities=9% Similarity=-0.092 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHHHhc--CCcEEeecCCC------------CHHHHHHHHHHhhhcc
Q psy17603 367 DLCEPVDKYVTDWLDE--GVALVGGCCRT------------YAEDTLHMKHRLDDWV 409 (591)
Q Consensus 367 ~~~~~~~~~~~~~~~~--Gv~~VGgcCgt------------gP~~i~~l~~~l~~~~ 409 (591)
.+++++.+.++.+.+. ++++|=+||++ .|+.+.++++.+++..
T Consensus 100 ~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~ 156 (300)
T TIGR01037 100 SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT 156 (300)
T ss_pred CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc
Confidence 3467888888877765 39999999984 5677778888777653
No 248
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=41.08 E-value=5.6e+02 Score=28.75 Aligned_cols=58 Identities=16% Similarity=-0.064 Sum_probs=30.5
Q ss_pred CcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEE-----eecCCCCHHHHHHHHHHhh
Q psy17603 343 NIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALV-----GGCCRTYAEDTLHMKHRLD 406 (591)
Q Consensus 343 ~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~V-----GgcCgtgP~~i~~l~~~l~ 406 (591)
++||+++++..-.|... -..|.+...+.+. |.=.|++.+ .+.=..+......+.+.+.
T Consensus 288 ~l~IhaHrA~~ga~~r~---~~~Gis~~vl~KL---~RLaGaD~ih~~t~~gk~~g~~~~~~~~~~~~~ 350 (475)
T CHL00040 288 GLLLHIHRAMHAVIDRQ---KNHGIHFRVLAKA---LRMSGGDHIHAGTVVGKLEGEREMTLGFVDLLR 350 (475)
T ss_pred CceEEeccccccccccC---ccCCCcHHHHHHH---HHHcCCCccccCCcccCCCCCHHHHHHHHHHHH
Confidence 57899988865444221 1123333333333 335688876 5544445565555555443
No 249
>PRK08005 epimerase; Validated
Probab=40.93 E-value=1.6e+02 Score=29.24 Aligned_cols=109 Identities=11% Similarity=-0.059 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHhcCCcEE---------eecCCCCHHHHHHHHHHhhhcccCccccccccccCCCCchhhhhhhCCcchh
Q psy17603 369 CEPVDKYVTDWLDEGVALV---------GGCCRTYAEDTLHMKHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVV 439 (591)
Q Consensus 369 ~~~~~~~~~~~~~~Gv~~V---------GgcCgtgP~~i~~l~~~l~~~~~~~~~~~pd~~~~~plws~~~~~~~P~~~~ 439 (591)
+..+.+.++++.+.|++.+ -=|=+.||..++.+++. +. .| ..+++|..+|+...
T Consensus 12 ~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~----t~------------~~-~DvHLMv~~P~~~i 74 (210)
T PRK08005 12 PLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQ----TR------------HP-LSFHLMVSSPQRWL 74 (210)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhc----CC------------CC-eEEEeccCCHHHHH
Confidence 3456777777778776642 23557799999888763 11 12 25778999999766
Q ss_pred hcchhhhhCCCCcccccccCCCCcccccCCcchhHHHHHHHHHcCCcEEEeecC-CcHHHHHHHHhccc
Q psy17603 440 QTHRDFIKGSQTNDFLRDYNSPNLWIDRDLCEPVDKYVTDWLDEGVALVGGCCR-TYAEDTLHMKHRLD 507 (591)
Q Consensus 440 ~~h~~~i~aG~~v~~~~~y~~~~~~l~~~~~e~~a~~~~~~~~~G~~~vgGCcg-ttp~~i~~l~~~~~ 507 (591)
..|..+|++.++ .-|.++ +...+..+...+.|...=-.-.+ |-.+.++.+-+.++
T Consensus 75 ---~~~~~~gad~It-~H~Ea~---------~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD 130 (210)
T PRK08005 75 ---PWLAAIRPGWIF-IHAESV---------QNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLD 130 (210)
T ss_pred ---HHHHHhCCCEEE-EcccCc---------cCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcC
Confidence 678899987543 223321 12334445555677643113344 44445555555554
No 250
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=40.86 E-value=1.8e+02 Score=29.99 Aligned_cols=88 Identities=16% Similarity=0.262 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhcccccc
Q psy17603 254 FTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKA 333 (591)
Q Consensus 254 ~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~~ 333 (591)
+...++.+....+.. .-||+.|...+....++ ++|+|.+.+.+|+ +++++.++..++.
T Consensus 168 i~~~v~~~r~~~~~~-~~Igvev~s~eea~~A~--------------~~gaDyI~ld~~~-~e~l~~~~~~~~~------ 225 (268)
T cd01572 168 ITEAVRRARAAAPFT-LKIEVEVETLEQLKEAL--------------EAGADIIMLDNMS-PEELREAVALLKG------ 225 (268)
T ss_pred HHHHHHHHHHhCCCC-CeEEEEECCHHHHHHHH--------------HcCCCEEEECCcC-HHHHHHHHHHcCC------
Confidence 355555554432222 34899887765544442 2589999999986 6777777766531
Q ss_pred ccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecC
Q psy17603 334 WLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCC 391 (591)
Q Consensus 334 ~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcC 391 (591)
++|+.+. + |.+++.+.+++ +.|++.|....
T Consensus 226 ---------~ipi~Ai----------G-----GI~~~ni~~~a----~~Gvd~Iav~s 255 (268)
T cd01572 226 ---------RVLLEAS----------G-----GITLENIRAYA----ETGVDYISVGA 255 (268)
T ss_pred ---------CCcEEEE----------C-----CCCHHHHHHHH----HcCCCEEEEEe
Confidence 3566652 1 23344555544 67998887654
No 251
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=40.50 E-value=2.9e+02 Score=29.88 Aligned_cols=23 Identities=9% Similarity=0.326 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHHhcceeecc
Q psy17603 37 AKDAVVQTHRDFIKAGADIVMTN 59 (591)
Q Consensus 37 ~Pe~v~~vH~~yl~AGAdiI~Tn 59 (591)
+|+...++-.+++++|.|.|.-.
T Consensus 144 d~~~la~~~~~l~~gGvD~Ikdd 166 (367)
T cd08205 144 SPEELAELAYELALGGIDLIKDD 166 (367)
T ss_pred CHHHHHHHHHHHHhcCCCeeecc
Confidence 57889999999999999998644
No 252
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=40.48 E-value=37 Score=35.44 Aligned_cols=41 Identities=24% Similarity=0.169 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCCCEEEecc-cCCHHHHHHHHHHHHhcCCCceE
Q psy17603 195 HRPRIQALVEAGADILAIET-IPASKEAQMLCRLLREWPHQKAW 237 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET-~~~~~Ea~aa~~a~~~~~~~pv~ 237 (591)
--+|.++|.++|+|.+.++. ..+.+|++.+++.+.. .+|+.
T Consensus 168 AI~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~~--p~pv~ 209 (290)
T TIGR02321 168 AVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWPG--KVPLV 209 (290)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcCC--CCCeE
Confidence 44678899999999999997 5888888777665431 24654
No 253
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=40.28 E-value=5.8e+02 Score=28.62 Aligned_cols=80 Identities=5% Similarity=0.007 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEE-----e-cccCCHHH-HHHHHHHHHh---cCCCceEEEEEecCCCcccCCCCHH
Q psy17603 186 VSEATMAEWHRPRIQALVEAGADILA-----I-ETIPASKE-AQMLCRLLRE---WPHQKAWLSFSCKDDKHISNGESFT 255 (591)
Q Consensus 186 ~~~e~l~~~h~~~i~~l~~aGvD~i~-----~-ET~~~~~E-a~aa~~a~~~---~~~~pv~vSf~~~~~g~l~~G~~~~ 255 (591)
++++++.+.-+ .+...|+|+|- . .+|.-++| ++++.+++++ -++.+.+-++.+ +|.+..
T Consensus 173 Lsp~~~a~~~y----~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG~~k~y~~Ni-------T~~~~~ 241 (468)
T PRK04208 173 LSAKNYGRVVY----EALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETGERKGHYLNV-------TAPTME 241 (468)
T ss_pred CCHHHHHHHHH----HHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhCCcceEEEec-------CCCCHH
Confidence 67777665554 56678999973 2 22333433 4555555542 256655545544 233345
Q ss_pred HHHHHHHhhCCCCeEEEEecC
Q psy17603 256 QVARTCYNMNPDQLIAVGVNC 276 (591)
Q Consensus 256 ~~~~~~~~~~~~~~~aiGvNC 276 (591)
+..+........+..++.+|.
T Consensus 242 em~~ra~~~~e~G~~~~mv~~ 262 (468)
T PRK04208 242 EMYKRAEFAKELGSPIVMIDV 262 (468)
T ss_pred HHHHHHHHHHHhCCCEEEEec
Confidence 555544322234555666665
No 254
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=40.20 E-value=1e+02 Score=29.63 Aligned_cols=24 Identities=8% Similarity=0.207 Sum_probs=18.9
Q ss_pred cCHHHHHHHHHHHHHHhcceeecc
Q psy17603 36 TAKDAVVQTHRDFIKAGADIVMTN 59 (591)
Q Consensus 36 ~~Pe~v~~vH~~yl~AGAdiI~Tn 59 (591)
.+|+...++-+..+++|+++|+-.
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~ 36 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEIT 36 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEe
Confidence 467778888888899999987654
No 255
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=39.89 E-value=4.2e+02 Score=28.01 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=33.4
Q ss_pred cCC-CEEEecccCCHHHHHHHHHHHHhc----CCCceEEEEEecCCCcccCCCC---HHHHHHHHHhhCCCCeEEEEecC
Q psy17603 205 AGA-DILAIETIPASKEAQMLCRLLREW----PHQKAWLSFSCKDDKHISNGES---FTQVARTCYNMNPDQLIAVGVNC 276 (591)
Q Consensus 205 aGv-D~i~~ET~~~~~Ea~aa~~a~~~~----~~~pv~vSf~~~~~g~l~~G~~---~~~~~~~~~~~~~~~~~aiGvNC 276 (591)
-|+ |++..|-+.+..-...-.+-.+.+ ...|+.|.+ -|.+ +.++++.+ ...+++.|-+||
T Consensus 33 ~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl---------~gsdp~~l~eaA~~~---~~~g~~~IdlN~ 100 (323)
T COG0042 33 LGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQL---------GGSDPELLAEAAKIA---EELGADIIDLNC 100 (323)
T ss_pred hCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEe---------cCCCHHHHHHHHHHH---HhcCCCEEeeeC
Confidence 377 999999987653322111111111 134655555 2333 34444444 234588899999
Q ss_pred CCc
Q psy17603 277 VRP 279 (591)
Q Consensus 277 ~~p 279 (591)
.-|
T Consensus 101 GCP 103 (323)
T COG0042 101 GCP 103 (323)
T ss_pred CCC
Confidence 443
No 256
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=39.78 E-value=4.1e+02 Score=26.82 Aligned_cols=42 Identities=10% Similarity=-0.080 Sum_probs=33.7
Q ss_pred CChHHHHHHHHHHHhcCCcEEeecCCC---CHHHHHHHHHHhhhc
Q psy17603 367 DLCEPVDKYVTDWLDEGVALVGGCCRT---YAEDTLHMKHRLDDW 408 (591)
Q Consensus 367 ~~~~~~~~~~~~~~~~Gv~~VGgcCgt---gP~~i~~l~~~l~~~ 408 (591)
.+++.+.+.++++.+.|++.|.+|=.+ .|+.+..+++.+++.
T Consensus 136 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~ 180 (259)
T cd07939 136 ADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAA 180 (259)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHh
Confidence 456888999998899999988776433 689999998888765
No 257
>PLN02892 isocitrate lyase
Probab=39.76 E-value=60 Score=36.76 Aligned_cols=63 Identities=19% Similarity=0.341 Sum_probs=46.3
Q ss_pred CCCccceeec-ccccHHHHHHHHHHhhc-cccccccccccCCCCcceEEecCCCcceeccCCeecC-CCChHHHHHHHHH
Q psy17603 302 SGEHILAIET-IPASKEAQMLCRLLREW-PNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWID-RDLCEPVDKYVTD 378 (591)
Q Consensus 302 aG~D~l~iET-~~d~~E~~~a~~~~~~~-~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~-~~~~~~~~~~~~~ 378 (591)
-++|+|++|| -||+.+++.-.+.+++. | +. .++| |...+|+ |.. +.+.+.+..+..+
T Consensus 399 PyaDliW~ET~~Pdl~~A~~Fa~~V~~~~P-------------~k-~LaY-NlSPSFN-----W~~~g~~d~~i~~F~~d 458 (570)
T PLN02892 399 PYADLIWMETASPDLAEATKFAEGVKAKHP-------------EI-MLAY-NLSPSFN-----WDASGMTDEQMAEFIPR 458 (570)
T ss_pred cccCEEEecCCCCCHHHHHHHHHHHHHhCC-------------CC-eeee-cCCCCcC-----CCCCCCCHHHHHHHHHH
Confidence 3689999999 89999999999999874 3 12 3444 2233452 443 5678899999999
Q ss_pred HHhcCC
Q psy17603 379 WLDEGV 384 (591)
Q Consensus 379 ~~~~Gv 384 (591)
+..+|.
T Consensus 459 LaklGy 464 (570)
T PLN02892 459 LARLGY 464 (570)
T ss_pred HHhcCc
Confidence 888884
No 258
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=39.69 E-value=4e+02 Score=26.63 Aligned_cols=109 Identities=14% Similarity=0.052 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhcCCcEE-----e----ecCCCCHHHHHHHHHHhhhcccCccccccccccCCCCchhhhhhhCCcchhh
Q psy17603 370 EPVDKYVTDWLDEGVALV-----G----GCCRTYAEDTLHMKHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQ 440 (591)
Q Consensus 370 ~~~~~~~~~~~~~Gv~~V-----G----gcCgtgP~~i~~l~~~l~~~~~~~~~~~pd~~~~~plws~~~~~~~P~~~~~ 440 (591)
..+.+.++++.+.|++.+ = =|=+.||..++++++.. +. .| ..+++|..+|+...
T Consensus 16 ~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~---~~------------~~-~dvHLMv~~P~~~i- 78 (223)
T PRK08745 16 ARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHG---IT------------AP-IDVHLMVEPVDRIV- 78 (223)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccCccCCCcccCHHHHHHHHhhC---CC------------CC-EEEEeccCCHHHHH-
Confidence 456777777777776553 1 24467999888887631 11 12 25778999999766
Q ss_pred cchhhhhCCCCcccccccCCCCcccccCCcchhHHHHHHHHHcCCcEEEeecC-CcHHHHHHHHhccc
Q psy17603 441 THRDFIKGSQTNDFLRDYNSPNLWIDRDLCEPVDKYVTDWLDEGVALVGGCCR-TYAEDTLHMKHRLD 507 (591)
Q Consensus 441 ~h~~~i~aG~~v~~~~~y~~~~~~l~~~~~e~~a~~~~~~~~~G~~~vgGCcg-ttp~~i~~l~~~~~ 507 (591)
..|..+|++.++ .-|.++ ....+..+...+.|...=-...+ |-.+.+..+-+.++
T Consensus 79 --~~~~~~gad~I~-~H~Ea~---------~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD 134 (223)
T PRK08745 79 --PDFADAGATTIS-FHPEAS---------RHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELD 134 (223)
T ss_pred --HHHHHhCCCEEE-EcccCc---------ccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcC
Confidence 678899987653 223221 12344444555677643224444 44445554544444
No 259
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=39.43 E-value=2.1e+02 Score=29.75 Aligned_cols=58 Identities=9% Similarity=0.216 Sum_probs=36.5
Q ss_pred CHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhh
Q psy17603 253 SFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLRE 327 (591)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~ 327 (591)
++.++++.+....+. .-|-|-|...+.+..++ ++|+|++++.+|+ .++++.++..+++
T Consensus 175 ~i~~av~~~r~~~~~--~kIeVEv~tleqa~ea~--------------~agaDiI~LDn~~-~e~l~~av~~~~~ 232 (284)
T PRK06096 175 DWSGAINQLRRHAPE--KKIVVEADTPKEAIAAL--------------RAQPDVLQLDKFS-PQQATEIAQIAPS 232 (284)
T ss_pred cHHHHHHHHHHhCCC--CCEEEECCCHHHHHHHH--------------HcCCCEEEECCCC-HHHHHHHHHHhhc
Confidence 677787777643222 22666665444333332 3689999999774 6778888777653
No 260
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=39.05 E-value=2.5e+02 Score=28.21 Aligned_cols=106 Identities=9% Similarity=0.026 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCCcEE------e---ecCCCCHHHHHHHHHHhhhcccCccccccccccCCCCchhhhhhhCCcchhh
Q psy17603 370 EPVDKYVTDWLDEGVALV------G---GCCRTYAEDTLHMKHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQ 440 (591)
Q Consensus 370 ~~~~~~~~~~~~~Gv~~V------G---gcCgtgP~~i~~l~~~l~~~~~~~~~~~pd~~~~~plws~~~~~~~P~~~~~ 440 (591)
..+.+.++++.+.|++.+ | =|=+.||..++.+.+ . .| ..+++|..+|+...
T Consensus 25 ~~l~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~----~--------------~~-~DvHLMv~~P~~~i- 84 (228)
T PRK08091 25 LKFNETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQFPT----H--------------CF-KDVHLMVRDQFEVA- 84 (228)
T ss_pred HHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHhCC----C--------------CC-EEEEeccCCHHHHH-
Confidence 456777777778776653 2 244679999877742 1 02 25678999999766
Q ss_pred cchhhhhCCCCcccccccCCCCcccccCCcchhHHHHHHHHHcCC-cEEE-eecC-CcHHHHHHHHhccc
Q psy17603 441 THRDFIKGSQTNDFLRDYNSPNLWIDRDLCEPVDKYVTDWLDEGV-ALVG-GCCR-TYAEDTLHMKHRLD 507 (591)
Q Consensus 441 ~h~~~i~aG~~v~~~~~y~~~~~~l~~~~~e~~a~~~~~~~~~G~-~~vg-GCcg-ttp~~i~~l~~~~~ 507 (591)
..|.++|++.++ .-|.++ ....+..+...+.|. .-.| --.+ |-.+.++.+-+.++
T Consensus 85 --~~~~~aGad~It-~H~Ea~---------~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD 142 (228)
T PRK08091 85 --KACVAAGADIVT-LQVEQT---------HDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQID 142 (228)
T ss_pred --HHHHHhCCCEEE-EcccCc---------ccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcC
Confidence 678899987653 223322 123344444556776 2334 3444 44445555544454
No 261
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.62 E-value=1.1e+02 Score=31.83 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecC
Q psy17603 197 PRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNC 276 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC 276 (591)
++++..+++|+|+|.+..|+ .++++.+++.++. .+.+.. ..|.++..+.+.. ..+++.|-+-+
T Consensus 208 eea~~a~~agaDiImLDnms-pe~l~~av~~~~~----~~~lea--------SGGI~~~ni~~yA----~tGVD~Is~ga 270 (290)
T PRK06559 208 AAAEEAAAAGADIIMLDNMS-LEQIEQAITLIAG----RSRIEC--------SGNIDMTTISRFR----GLAIDYVSSGS 270 (290)
T ss_pred HHHHHHHHcCCCEEEECCCC-HHHHHHHHHHhcC----ceEEEE--------ECCCCHHHHHHHH----hcCCCEEEeCc
Confidence 44555678899999999985 7788877776653 122221 2356666665554 24555555544
No 262
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=37.94 E-value=3.3e+02 Score=27.00 Aligned_cols=76 Identities=16% Similarity=0.311 Sum_probs=42.5
Q ss_pred HHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCccc------CCCCHHHHHHHHHhhCCCCeEE
Q psy17603 198 RIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHIS------NGESFTQVARTCYNMNPDQLIA 271 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~------~G~~~~~~~~~~~~~~~~~~~a 271 (591)
+++.++++|+|.+.+-|.- +.+-..+.++.+.++...+++++.+....... .+.++.+.++.+.+.....+..
T Consensus 90 ~~~~~~~~Ga~~v~iGs~~-~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~ 168 (241)
T PRK13585 90 DAASLLDLGVDRVILGTAA-VENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILF 168 (241)
T ss_pred HHHHHHHcCCCEEEEChHH-hhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEE
Confidence 3455667999998887743 22223344455556556788888775322221 2336667777765433334444
Q ss_pred EEe
Q psy17603 272 VGV 274 (591)
Q Consensus 272 iGv 274 (591)
.++
T Consensus 169 ~~~ 171 (241)
T PRK13585 169 TNV 171 (241)
T ss_pred Eee
Confidence 444
No 263
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=37.83 E-value=3.6e+02 Score=27.19 Aligned_cols=103 Identities=12% Similarity=0.114 Sum_probs=56.1
Q ss_pred HHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCC---c------ccCCCCHHHHHHHHHhhCCC
Q psy17603 197 PRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDK---H------ISNGESFTQVARTCYNMNPD 267 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g---~------l~~G~~~~~~~~~~~~~~~~ 267 (591)
++++.+++.|+|-+++.|..- ..-..+.++++++++. +++|..++.+| . ..++.++.++++.+......
T Consensus 87 e~~~~~l~~Ga~~vvigT~a~-~~p~~~~~~~~~~g~~-ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~ 164 (243)
T TIGR01919 87 SSLRAALTGGRARVNGGTAAL-ENPWWAAAVIRYGGDI-VAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCS 164 (243)
T ss_pred HHHHHHHHcCCCEEEECchhh-CCHHHHHHHHHHcccc-EEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCC
Confidence 455567789999999887432 1222333455566554 88888886223 2 23566788888887543222
Q ss_pred CeEEEEecC----CCchhhHHHHHHHHhcCCceEEecCCCC
Q psy17603 268 QLIAVGVNC----VRPLMVSSLIEQLKTENIPLVVYPNSGE 304 (591)
Q Consensus 268 ~~~aiGvNC----~~p~~i~~~l~~l~~~~~~i~~l~~aG~ 304 (591)
.+..--++. .+|.. .+++.+.+.. .+...+.+|+
T Consensus 165 ~ii~tdI~~dGt~~G~d~--~l~~~l~~~~-~~pviasGGv 202 (243)
T TIGR01919 165 RVVVTDSKKDGLSGGPNE--LLLEVVAART-DAIVAASGGS 202 (243)
T ss_pred EEEEEecCCcccCCCcCH--HHHHHHHhhC-CCCEEEECCc
Confidence 333333333 33432 2444444331 3445566776
No 264
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=37.79 E-value=5.2e+02 Score=27.42 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=21.1
Q ss_pred CCCHHHH---HHHHHHHHHHHHHcCCCEEEec
Q psy17603 185 HVSEATM---AEWHRPRIQALVEAGADILAIE 213 (591)
Q Consensus 185 ~~~~e~l---~~~h~~~i~~l~~aGvD~i~~E 213 (591)
.++.+++ .+.|.+-++...++|.|.|-+.
T Consensus 141 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih 172 (338)
T cd02933 141 ALTTEEIPGIVADFRQAARNAIEAGFDGVEIH 172 (338)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 4565554 4667777777788999999765
No 265
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=37.43 E-value=64 Score=33.17 Aligned_cols=39 Identities=28% Similarity=0.353 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHH
Q psy17603 187 SEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRL 227 (591)
Q Consensus 187 ~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a 227 (591)
+.++..+ -.+++++|.++|+|.|++|-+| .+.++.+.+.
T Consensus 155 t~~~a~~-~i~~A~a~e~AGA~~ivlE~vp-~~~a~~It~~ 193 (263)
T TIGR00222 155 DEEAAKK-LLEDALALEEAGAQLLVLECVP-VELAAKITEA 193 (263)
T ss_pred CHHHHHH-HHHHHHHHHHcCCCEEEEcCCc-HHHHHHHHHh
Confidence 4454444 5568889999999999999999 4566655554
No 266
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=37.42 E-value=5.2e+02 Score=27.28 Aligned_cols=74 Identities=14% Similarity=0.097 Sum_probs=38.3
Q ss_pred HHHHHHHcCCCEEEecccC-CHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCC---CHHHHHHHHHhh-CCCCeEEE
Q psy17603 198 RIQALVEAGADILAIETIP-ASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGE---SFTQVARTCYNM-NPDQLIAV 272 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~ET~~-~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~---~~~~~~~~~~~~-~~~~~~ai 272 (591)
.++.+.+.|+|++-+.... ++.+++ +.+++ .+.+...+.+. .+..+. -+.+.++.+.+. ...+-..+
T Consensus 226 ~l~~~~e~g~dvl~~d~~~~dl~eak------~~~g~-k~~l~GNlDp~-~L~~~~t~E~i~~~v~~~l~~~g~~~~fIf 297 (321)
T cd03309 226 LVPSMAEMGVDSWNVVMTANNTAELR------RLLGD-KVVLAGAIDDV-ALDTATWPEEDARGVAKAAAECAPIHPFIS 297 (321)
T ss_pred HHHHHHHcCCCEEEecCCCCCHHHHH------HHhCC-CeEEEcCCChH-HhcCCCCHHHHHHHHHHHHHHhCCCCCEEe
Confidence 3556778899999887654 776643 22333 35556655543 333333 244444444332 22233444
Q ss_pred EecCCCc
Q psy17603 273 GVNCVRP 279 (591)
Q Consensus 273 GvNC~~p 279 (591)
.-.|..|
T Consensus 298 ~~~~~~~ 304 (321)
T cd03309 298 APTAGLP 304 (321)
T ss_pred CccCCCC
Confidence 4456544
No 267
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=37.39 E-value=4.5e+02 Score=31.32 Aligned_cols=84 Identities=15% Similarity=0.127 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEec-----ccCCHHHHHHHHHHHHhc----CCCceEEEEEecCCCcccCCCCHHHHH
Q psy17603 188 EATMAEWHRPRIQALVEAGADILAIE-----TIPASKEAQMLCRLLREW----PHQKAWLSFSCKDDKHISNGESFTQVA 258 (591)
Q Consensus 188 ~e~l~~~h~~~i~~l~~aGvD~i~~E-----T~~~~~Ea~aa~~a~~~~----~~~pv~vSf~~~~~g~l~~G~~~~~~~ 258 (591)
.+.+...|.+.++.|.++||++|=+. +-+...+..++.++.+.. ++.++++...|+ ++.+..
T Consensus 173 l~~L~~~y~~~l~~L~~~G~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~ki~l~tyFg---------~~~~~~ 243 (750)
T TIGR01371 173 LEKLLPVYKEVLKKLAEAGATWVQIDEPALVTDLSKEDLAAFKEAYTELSEALSGLKLLLQTYFD---------SVGDAL 243 (750)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeCchhcCCCCHHHHHHHHHHHHHHHhccCCceEEEECCCC---------chHHHH
Confidence 46778899999999999999987443 222223444444444432 244555555443 244555
Q ss_pred HHHHhhCCCCeEEEEecCCC-chhhH
Q psy17603 259 RTCYNMNPDQLIAVGVNCVR-PLMVS 283 (591)
Q Consensus 259 ~~~~~~~~~~~~aiGvNC~~-p~~i~ 283 (591)
..+. ...++++|+.++. +..+.
T Consensus 244 ~~l~---~lpvd~l~lD~v~~~~~L~ 266 (750)
T TIGR01371 244 EALV---SLPVKGIGLDFVHGKGTLE 266 (750)
T ss_pred HHHH---cCCCCEEEEEeccCcccHH
Confidence 5553 3568999999965 44443
No 268
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=37.21 E-value=5.7e+02 Score=27.66 Aligned_cols=196 Identities=10% Similarity=0.068 Sum_probs=0.0
Q ss_pred cceeEeeccCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCEEEec-------------------ccCC
Q psy17603 157 RDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIE-------------------TIPA 217 (591)
Q Consensus 157 ~~~~VagsiGP~ga~l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~E-------------------T~~~ 217 (591)
++++|.+.++.++..-.+| ..-+++.++|+ ...+.|+=+|++| .+.+
T Consensus 13 kNRiv~apm~~~~~~~~dg----------~~t~~~~~yy~----~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~ 78 (382)
T cd02931 13 KNRFAMAPMGPLGLADNDG----------AFNQRGIDYYV----ERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNP 78 (382)
T ss_pred eCCcEeCCcCcccccCCCC----------CCCHHHHHHHH----HHhcCCCCEEEEEEEEeCCcccccCCCCccccccCC
Q ss_pred ---HHHHHHHHHHHHhcCCCceEEEEEec----------------------------CCCcccCCCCHHHHHHHHHh---
Q psy17603 218 ---SKEAQMLCRLLREWPHQKAWLSFSCK----------------------------DDKHISNGESFTQVARTCYN--- 263 (591)
Q Consensus 218 ---~~Ea~aa~~a~~~~~~~pv~vSf~~~----------------------------~~g~l~~G~~~~~~~~~~~~--- 263 (591)
+...+.+.++++++ +.++++.+.-. ...+-++.+.+.++++.+..
T Consensus 79 ~~~i~~~k~l~davh~~-G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ 157 (382)
T cd02931 79 TAFIRTAKEMTERVHAY-GTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESAV 157 (382)
T ss_pred HHHhHHHHHHHHHHHHc-CCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHHH
Q ss_pred -hCCCCeEEEEecCCC-chhhHHHHHHHHhcC-CceEEecCCCCccceeecccccHHHHHHHHHHhhccccccccccccC
Q psy17603 264 -MNPDQLIAVGVNCVR-PLMVSSLIEQLKTEN-IPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCK 340 (591)
Q Consensus 264 -~~~~~~~aiGvNC~~-p~~i~~~l~~l~~~~-~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~ 340 (591)
....+.++|-|+|.+ -..+.+.|......+ ++.+.-++.-..+++ ..++++|+..
T Consensus 158 ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~-----------eii~~vr~~~----------- 215 (382)
T cd02931 158 IAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAI-----------EIVEEIKARC----------- 215 (382)
T ss_pred HHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHH-----------HHHHHHHHhc-----------
Q ss_pred CCCcceEEecCCCcce-----------eccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCCC
Q psy17603 341 TENIPLVVYPNSGERY-----------DAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRT 393 (591)
Q Consensus 341 ~~~~pl~~~pn~g~~~-----------d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCgt 393 (591)
..+.||.+-.+.-... +...+ +.++++..++++.+.+.|+++|=+-.|+
T Consensus 216 g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~----g~~~e~~~~~~~~l~~~gvD~l~vs~g~ 275 (382)
T cd02931 216 GEDFPVSLRYSVKSYIKDLRQGALPGEEFQEK----GRDLEEGLKAAKILEEAGYDALDVDAGS 275 (382)
T ss_pred CCCceEEEEEechhhccccccccccccccccC----CCCHHHHHHHHHHHHHhCCCEEEeCCCC
No 269
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=37.15 E-value=1.5e+02 Score=30.89 Aligned_cols=104 Identities=7% Similarity=0.015 Sum_probs=54.1
Q ss_pred chhHHHHHHHHHcCCcEE--EeecCC----cHHHHHH-HHhcccccCC-----CCCCCCCcHHHHHHHhhhcCCCCeeEE
Q psy17603 471 EPVDKYVTDWLDEGVALV--GGCCRT----YAEDTLH-MKHRLDDWDD-----KHISNGESFTQVARTCYNMNPDQLIAV 538 (591)
Q Consensus 471 e~~a~~~~~~~~~G~~~v--gGCcgt----tp~~i~~-l~~~~~~~d~-----~~l~dG~~l~~~~~~~~~~~~~~~~av 538 (591)
+.+.+.++.+++.|++-| .|+-|= |+++-+. ++..++..++ ..+. .+.+++++.++....-.++++
T Consensus 28 ~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~--~~t~~~i~~~~~a~~~Gadav 105 (303)
T PRK03620 28 AAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG--GGTAQAIEYAQAAERAGADGI 105 (303)
T ss_pred HHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--CCHHHHHHHHHHHHHhCCCEE
Confidence 446777777788887443 344431 3333332 2222221111 1122 256777776653223345665
Q ss_pred EEcC-----CChhhHHHHHHHhhh-cCCcEEEecCCCCcCCCcc
Q psy17603 539 GVNC-----VRPLMVSPLIEQLKT-ENIPLVVYPNSGERYDFHL 576 (591)
Q Consensus 539 GiNC-----~~p~~v~~~i~~l~~-~~~pl~vYPNsG~~yd~~~ 576 (591)
.+-- .+.+.+....+.+.. ++.|+++|-+.|....+++
T Consensus 106 ~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~ 149 (303)
T PRK03620 106 LLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADT 149 (303)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHH
Confidence 5532 123445555555555 5799999987775555543
No 270
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=37.12 E-value=4.6e+02 Score=26.56 Aligned_cols=41 Identities=17% Similarity=0.158 Sum_probs=26.0
Q ss_pred eecCCCChHHHHHHHHHHHhcCCcEEeecCCCCHHHHHHHHH
Q psy17603 362 RWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKH 403 (591)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCgtgP~~i~~l~~ 403 (591)
+++.-.+.+.+.++++...+.|. .+|+--+...+||..|..
T Consensus 159 ~L~d~~~~~~L~~Fv~~ar~~gL-~~aLAGSL~~~di~~L~~ 199 (235)
T PF04476_consen 159 SLFDHLSEEELAEFVAQARAHGL-MCALAGSLRFEDIPRLKR 199 (235)
T ss_pred chhhcCCHHHHHHHHHHHHHccc-hhhccccCChhHHHHHHh
Confidence 33444556778888877777775 345555567777766654
No 271
>PLN02417 dihydrodipicolinate synthase
Probab=36.89 E-value=1.9e+02 Score=29.81 Aligned_cols=77 Identities=14% Similarity=-0.022 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEec-ccC-----CHHHHHHHHHHHHhc-CC-CceEEEEEecCCCcccCCCCHHH
Q psy17603 185 HVSEATMAEWHRPRIQALVEAGADILAIE-TIP-----ASKEAQMLCRLLREW-PH-QKAWLSFSCKDDKHISNGESFTQ 256 (591)
Q Consensus 185 ~~~~e~l~~~h~~~i~~l~~aGvD~i~~E-T~~-----~~~Ea~aa~~a~~~~-~~-~pv~vSf~~~~~g~l~~G~~~~~ 256 (591)
.++.+. +++.++.+++.|+|.|++. |.+ +.+|-+.+++.+.+. .+ .|+++.. ...+..+
T Consensus 18 ~iD~~~----~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv---------~~~~t~~ 84 (280)
T PLN02417 18 RFDLEA----YDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNT---------GSNSTRE 84 (280)
T ss_pred CcCHHH----HHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEEC---------CCccHHH
Confidence 355655 5566678889999998764 333 245655566554432 33 4666544 1234566
Q ss_pred HHHHHHhhCCCCeEEEEe
Q psy17603 257 VARTCYNMNPDQLIAVGV 274 (591)
Q Consensus 257 ~~~~~~~~~~~~~~aiGv 274 (591)
+++.+......+++++.+
T Consensus 85 ~i~~a~~a~~~Gadav~~ 102 (280)
T PLN02417 85 AIHATEQGFAVGMHAALH 102 (280)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 666554333445554443
No 272
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=36.86 E-value=5.5e+02 Score=27.40 Aligned_cols=34 Identities=15% Similarity=0.033 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCcEEeecCCCCHHHHHHHHHHh
Q psy17603 371 PVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRL 405 (591)
Q Consensus 371 ~~~~~~~~~~~~Gv~~VGgcCgtgP~~i~~l~~~l 405 (591)
.+.+-++.+.+.|++.|=+=|-..+ -.++|.+.+
T Consensus 183 ~li~dA~ale~AGAf~ivLE~Vp~~-la~~It~~l 216 (332)
T PLN02424 183 KVVETALALQEAGCFAVVLECVPAP-VAAAITSAL 216 (332)
T ss_pred HHHHHHHHHHHcCCcEEEEcCCcHH-HHHHHHHhC
Confidence 3444556677899999999886332 445555544
No 273
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=36.84 E-value=5.4e+02 Score=27.31 Aligned_cols=140 Identities=14% Similarity=0.083 Sum_probs=0.0
Q ss_pred hhccccCCCCcceeEeeccCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHcC--CCEEEecc-cCCHHHHHH
Q psy17603 147 WHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAG--ADILAIET-IPASKEAQM 223 (591)
Q Consensus 147 ~~~~~~~~~~~~~~VagsiGP~ga~l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~aG--vD~i~~ET-~~~~~Ea~a 223 (591)
|.+-.+.......++..|+|- +.+++ +++..|+++| +|+|.+.+ -.+......
T Consensus 71 ~~sfvrk~k~~~L~v~~SvG~-------------------t~e~~-----~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~ 126 (321)
T TIGR01306 71 RIPFIKDMQERGLFASISVGV-------------------KACEY-----EFVTQLAEEALTPEYITIDIAHGHSNSVIN 126 (321)
T ss_pred HHHHHHhccccccEEEEEcCC-------------------CHHHH-----HHHHHHHhcCCCCCEEEEeCccCchHHHHH
Q ss_pred HHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEec--------------CCCchhhHHHHHHH
Q psy17603 224 LCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVN--------------CVRPLMVSSLIEQL 289 (591)
Q Consensus 224 a~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvN--------------C~~p~~i~~~l~~l 289 (591)
.++.+|+....|.+|...+. +.+.+...+ ..++++|=+- +..+.-....+...
T Consensus 127 ~i~~i~~~~p~~~vi~GnV~---------t~e~a~~l~----~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev 193 (321)
T TIGR01306 127 MIKHIKTHLPDSFVIAGNVG---------TPEAVRELE----NAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWC 193 (321)
T ss_pred HHHHHHHhCCCCEEEEecCC---------CHHHHHHHH----HcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHH
Q ss_pred HhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCCh
Q psy17603 290 KTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLC 369 (591)
Q Consensus 290 ~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~ 369 (591)
.+.. +.||++ ++|..+ .
T Consensus 194 ~~a~-------------------------------------------------~~pVIa--dGGIr~------------~ 210 (321)
T TIGR01306 194 AKAA-------------------------------------------------RKPIIA--DGGIRT------------H 210 (321)
T ss_pred HHhc-------------------------------------------------CCeEEE--ECCcCc------------H
Q ss_pred HHHHHHHHHHHhcCCcEEeec
Q psy17603 370 EPVDKYVTDWLDEGVALVGGC 390 (591)
Q Consensus 370 ~~~~~~~~~~~~~Gv~~VGgc 390 (591)
.++.+.+ .+|++.|+.+
T Consensus 211 ~Di~KAL----a~GAd~Vmig 227 (321)
T TIGR01306 211 GDIAKSI----RFGASMVMIG 227 (321)
T ss_pred HHHHHHH----HcCCCEEeec
No 274
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=36.72 E-value=4.8e+02 Score=26.63 Aligned_cols=46 Identities=17% Similarity=0.144 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHHhcceeeccccccChhchhhhcCCChHHHHHHHHHHHH
Q psy17603 37 AKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQLIKSSVD 88 (591)
Q Consensus 37 ~Pe~v~~vH~~yl~AGAdiI~TnTy~as~~~l~~~~g~~~~~~~~l~~~av~ 88 (591)
+.+.+++.-+-++++|++-|..+-... +. ..++.++-.++++.+++
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~GstG--E~----~~lt~~Er~~l~~~~~~ 64 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCGTTG--ES----PTLSDEEHEAVIEAVVE 64 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCc--ch----hhCCHHHHHHHHHHHHH
Confidence 467777777778889999887772222 21 23556666666555443
No 275
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.65 E-value=2.3e+02 Score=29.43 Aligned_cols=58 Identities=5% Similarity=0.071 Sum_probs=36.5
Q ss_pred CHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHh
Q psy17603 253 SFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLR 326 (591)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~ 326 (591)
++.++++.+....+.. .-|-|-|-..+.+..++ ++|+|.+.+.+|+ +++++.++..++
T Consensus 179 ~i~~ai~~~r~~~~~~-~kIeVEv~tleea~ea~--------------~~gaDiI~LDn~s-~e~l~~av~~~~ 236 (281)
T PRK06106 179 GVREAIRRARAGVGHL-VKIEVEVDTLDQLEEAL--------------ELGVDAVLLDNMT-PDTLREAVAIVA 236 (281)
T ss_pred cHHHHHHHHHHhCCCC-CcEEEEeCCHHHHHHHH--------------HcCCCEEEeCCCC-HHHHHHHHHHhC
Confidence 3778888876533211 22555555444333332 4789999999995 588888887664
No 276
>KOG2949|consensus
Probab=36.48 E-value=3.8e+02 Score=27.07 Aligned_cols=92 Identities=14% Similarity=0.204 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecC------CCcccCCCCHHHHHHHH---HhhC
Q psy17603 195 HRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKD------DKHISNGESFTQVARTC---YNMN 265 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~------~g~l~~G~~~~~~~~~~---~~~~ 265 (591)
-+..++.+.++|+|.+-+|-=++. +..+++.+-+ .+.||+--.-+.| .|.-..|.++..+++.+ ...+
T Consensus 119 ~knAv~vmk~~g~~~vK~EgGs~~--~~~~~~~l~e-rgipV~gHvGLTPQ~v~~lGGyk~QGr~~~~a~~l~EtAmqLq 195 (306)
T KOG2949|consen 119 VKNAVRVMKEGGMDAVKLEGGSNS--RITAAKRLVE-RGIPVMGHVGLTPQAVSVLGGYKPQGRNIASAVKLVETAMQLQ 195 (306)
T ss_pred HHHHHHHHHhcCCceEEEccCcHH--HHHHHHHHHH-cCCceeeeccCChhhhhhccCcCccchhHHHHHHHHHHHHHHH
Confidence 344555777899999999985522 2222222223 3677764432222 23334555555554433 2234
Q ss_pred CCCeEEEEecCCCchhhHHHHHHH
Q psy17603 266 PDQLIAVGVNCVRPLMVSSLIEQL 289 (591)
Q Consensus 266 ~~~~~aiGvNC~~p~~i~~~l~~l 289 (591)
..+.+.+-+.|+.|.....+-..|
T Consensus 196 k~Gc~svvlECvP~~~A~~iTs~l 219 (306)
T KOG2949|consen 196 KAGCFSVVLECVPPPVAAAITSAL 219 (306)
T ss_pred hcccceEeeecCChHHHHHHHhcc
Confidence 456677777887766544443333
No 277
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=36.07 E-value=3.9e+02 Score=25.43 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcCCCEEEecccC-CHHHHHH----HHHHHHhcCCCceEEE
Q psy17603 195 HRPRIQALVEAGADILAIETIP-ASKEAQM----LCRLLREWPHQKAWLS 239 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET~~-~~~Ea~a----a~~a~~~~~~~pv~vS 239 (591)
+.++++.++++|+|++.+---. +-.+... +....+.+ +.|++++
T Consensus 15 ~~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~-~~~l~i~ 63 (196)
T TIGR00693 15 LLNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRY-GVPFIVN 63 (196)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHh-CCeEEEE
Confidence 4467778889999998775322 2223222 22333332 5777774
No 278
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.03 E-value=2.8e+02 Score=28.78 Aligned_cols=88 Identities=11% Similarity=0.104 Sum_probs=53.6
Q ss_pred CHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhccccc
Q psy17603 253 SFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQK 332 (591)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~ 332 (591)
++..+++.+... .+. .-||+-|-..+.+..++ ++|+|.+.+.+| ++++++.+++.++ +
T Consensus 175 ~v~~av~~~r~~-~~~-~~I~VEv~tleea~eA~--------------~~gaD~I~LD~~-~~e~l~~~v~~~~--~--- 232 (277)
T PRK05742 175 GIAQAVAAAHRI-APG-KPVEVEVESLDELRQAL--------------AAGADIVMLDEL-SLDDMREAVRLTA--G--- 232 (277)
T ss_pred CHHHHHHHHHHh-CCC-CeEEEEeCCHHHHHHHH--------------HcCCCEEEECCC-CHHHHHHHHHHhC--C---
Confidence 356666666543 222 44888886654443332 358999999776 6778887776543 1
Q ss_pred cccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecC
Q psy17603 333 AWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCC 391 (591)
Q Consensus 333 ~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcC 391 (591)
+.|+.+. + |.+++.+.+++ +.|++.|...+
T Consensus 233 ----------~i~leAs--G-------------GIt~~ni~~~a----~tGvD~Isvg~ 262 (277)
T PRK05742 233 ----------RAKLEAS--G-------------GINESTLRVIA----ETGVDYISIGA 262 (277)
T ss_pred ----------CCcEEEE--C-------------CCCHHHHHHHH----HcCCCEEEECh
Confidence 3566653 1 23344555544 68999988755
No 279
>PRK08005 epimerase; Validated
Probab=35.98 E-value=3.3e+02 Score=26.97 Aligned_cols=94 Identities=12% Similarity=0.126 Sum_probs=50.9
Q ss_pred HHHHHHHcCCCEEEe--cccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEec
Q psy17603 198 RIQALVEAGADILAI--ETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVN 275 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~--ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvN 275 (591)
.++.|.++|+|+|.+ |+...+ ..+++.+|+. +.++.+++ +| +++++.+...+. .-..+....+|
T Consensus 73 ~i~~~~~~gad~It~H~Ea~~~~---~~~l~~Ik~~-G~k~GlAl--nP------~Tp~~~i~~~l~--~vD~VlvMsV~ 138 (210)
T PRK08005 73 WLPWLAAIRPGWIFIHAESVQNP---SEILADIRAI-GAKAGLAL--NP------ATPLLPYRYLAL--QLDALMIMTSE 138 (210)
T ss_pred HHHHHHHhCCCEEEEcccCccCH---HHHHHHHHHc-CCcEEEEE--CC------CCCHHHHHHHHH--hcCEEEEEEec
Confidence 345677899999865 654444 3466677764 66666666 33 456665544442 12344444444
Q ss_pred C--CCchhhHHHHHHHH---hcCCceEEecCCCCc
Q psy17603 276 C--VRPLMVSSLIEQLK---TENIPLVVYPNSGEH 305 (591)
Q Consensus 276 C--~~p~~i~~~l~~l~---~~~~~i~~l~~aG~D 305 (591)
= .+-..+...++.++ +........+++|+.
T Consensus 139 PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~ 173 (210)
T PRK08005 139 PDGRGQQFIAAMCEKVSQSREHFPAAECWADGGIT 173 (210)
T ss_pred CCCccceecHHHHHHHHHHHHhcccCCEEEECCCC
Confidence 2 22234444444444 332223466778875
No 280
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=35.82 E-value=1.7e+02 Score=34.32 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHh----cCCCceEEEEEec
Q psy17603 195 HRPRIQALVEAGADILAIETIPASKEAQMLCRLLRE----WPHQKAWLSFSCK 243 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~----~~~~pv~vSf~~~ 243 (591)
--+|++.|.++|+|++=+ |+|+.++|+++-..-+. -...|.+.-+-|.
T Consensus 112 tv~Qi~~l~~aGceiVRv-tv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~ 163 (733)
T PLN02925 112 TVDQVMRIADKGADIVRI-TVQGKKEADACFEIKNTLVQKGYNIPLVADIHFA 163 (733)
T ss_pred HHHHHHHHHHcCCCEEEE-cCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCC
Confidence 446888999999999875 77899988776554443 1356777554443
No 281
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=35.74 E-value=1.5e+02 Score=27.43 Aligned_cols=90 Identities=17% Similarity=0.095 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcCCCEEEecccCCHHH-H--H--HHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCC
Q psy17603 194 WHRPRIQALVEAGADILAIETIPASKE-A--Q--MLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQ 268 (591)
Q Consensus 194 ~h~~~i~~l~~aGvD~i~~ET~~~~~E-a--~--aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~ 268 (591)
.+.+.++.+.+.|+|++.+.+...... . . ..+..+++..+.|+++...+.+... .+...+..+. ..+
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~a~~~~---~~g 84 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAA-----AVDIAAAAAR---AAG 84 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchh-----hhhHHHHHHH---HcC
Confidence 344555677888999999988653221 1 0 1123333335788888886654221 1111122332 246
Q ss_pred eEEEEecCCCch---hhHHHHHHHHh
Q psy17603 269 LIAVGVNCVRPL---MVSSLIEQLKT 291 (591)
Q Consensus 269 ~~aiGvNC~~p~---~i~~~l~~l~~ 291 (591)
+++|-+|+..+. .....++.+++
T Consensus 85 ~d~v~l~~~~~~~~~~~~~~~~~i~~ 110 (200)
T cd04722 85 ADGVEIHGAVGYLAREDLELIRELRE 110 (200)
T ss_pred CCEEEEeccCCcHHHHHHHHHHHHHH
Confidence 677777776643 34444555443
No 282
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=35.72 E-value=5.8e+02 Score=27.30 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHhcCCcEEeecCC
Q psy17603 369 CEPVDKYVTDWLDEGVALVGGCCR 392 (591)
Q Consensus 369 ~~~~~~~~~~~~~~Gv~~VGgcCg 392 (591)
.+.|.+.++...+.|+..-|..||
T Consensus 253 ~~~f~~~l~~A~~aGa~f~Gvl~G 276 (340)
T PRK12858 253 PELFRRTLEFACEAGADFSGVLCG 276 (340)
T ss_pred HHHHHHHHHHHHHcCCCccchhhh
Confidence 356777777777899999999998
No 283
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=35.39 E-value=98 Score=31.10 Aligned_cols=45 Identities=16% Similarity=0.286 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCCCEEEecccC---CHHHHHHHHHHHHhcCCCceEEE
Q psy17603 193 EWHRPRIQALVEAGADILAIETIP---ASKEAQMLCRLLREWPHQKAWLS 239 (591)
Q Consensus 193 ~~h~~~i~~l~~aGvD~i~~ET~~---~~~Ea~aa~~a~~~~~~~pv~vS 239 (591)
..|.+++...+++|.|+++ |... +..+++.+++++++ .+.+++|.
T Consensus 48 ~~H~e~a~~aL~aGkhVl~-~s~gAlad~e~~~~l~~aA~~-~g~~l~i~ 95 (229)
T TIGR03855 48 EAVKEYAEKILKNGKDLLI-MSVGALADRELRERLREVARS-SGRKVYIP 95 (229)
T ss_pred HHHHHHHHHHHHCCCCEEE-ECCcccCCHHHHHHHHHHHHh-cCCEEEEC
Confidence 4588888889999999988 5543 55677888888887 46776654
No 284
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=35.38 E-value=1.7e+02 Score=33.69 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhc----CCCceEEEEEec
Q psy17603 195 HRPRIQALVEAGADILAIETIPASKEAQMLCRLLREW----PHQKAWLSFSCK 243 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~----~~~pv~vSf~~~ 243 (591)
--+|+..|.++|+|++=+ |+|+.++|+++-..-+.. ...|.+.-.-|.
T Consensus 43 tv~Qi~~l~~aGceiVRv-tv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~ 94 (611)
T PRK02048 43 CVAQAKRIIDAGGEYVRL-TTQGVREAENLMNINIGLRSQGYMVPLVADVHFN 94 (611)
T ss_pred HHHHHHHHHHcCCCEEEE-cCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCC
Confidence 346888899999999874 779999987766555442 246777555443
No 285
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=35.30 E-value=98 Score=33.16 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhc----CCCceEEEEEec
Q psy17603 196 RPRIQALVEAGADILAIETIPASKEAQMLCRLLREW----PHQKAWLSFSCK 243 (591)
Q Consensus 196 ~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~----~~~pv~vSf~~~ 243 (591)
-+|+..|.++|+|++=+ |+|+.++|+++-+..+.+ ...|++.-.-|+
T Consensus 34 v~QI~~L~~aGceivRv-avp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd 84 (359)
T PF04551_consen 34 VAQIKRLEEAGCEIVRV-AVPDMEAAEALKEIKKRLRALGSPIPLVADIHFD 84 (359)
T ss_dssp HHHHHHHHHCT-SEEEE-EE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTT
T ss_pred HHHHHHHHHcCCCEEEE-cCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCC
Confidence 36888899999999864 778888887766655541 357877655443
No 286
>PRK15452 putative protease; Provisional
Probab=35.25 E-value=2.7e+02 Score=30.88 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=29.0
Q ss_pred HHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHh-cCCCceEEEEEec
Q psy17603 195 HRPRIQALVEAGADILAIETIPASKEAQMLCRLLRE-WPHQKAWLSFSCK 243 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~-~~~~pv~vSf~~~ 243 (591)
+.+.++.+.+.|+|.|++-.+. ++..+++ +|++|+++|..+.
T Consensus 78 ~~~~l~~l~~~gvDgvIV~d~G-------~l~~~ke~~p~l~ih~stqln 120 (443)
T PRK15452 78 FIRDLEPVIAMKPDALIMSDPG-------LIMMVREHFPEMPIHLSVQAN 120 (443)
T ss_pred HHHHHHHHHhCCCCEEEEcCHH-------HHHHHHHhCCCCeEEEEeccc
Confidence 3345667788999999876643 2334454 5789999998664
No 287
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=35.16 E-value=1.5e+02 Score=29.73 Aligned_cols=85 Identities=22% Similarity=0.256 Sum_probs=45.5
Q ss_pred eEEEeccHHHHHHhccCCCCCCC----------CCcchhhhccCHHHHHHHHHHHHHHhcceeeccccccChhch-hhhc
Q psy17603 4 VKLIDGGFSSQLSTYVGDIIDGH----------PLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGF-MEFL 72 (591)
Q Consensus 4 ~lilDGg~gT~L~~~~g~~~~~~----------~lWs~~~l~~~Pe~v~~vH~~yl~AGAdiI~TnTy~as~~~l-~~~~ 72 (591)
+.++||-|=.-||+. |+-+.-. .|- ...-+.+++. -++-.+||||||..+- +.+..++ .-..
T Consensus 124 v~~iDG~~R~~lEet-GmG~~~Evemlr~A~~k~l~-t~~yV~s~~e----Aqa~~~aGadiiv~hm-g~ttgG~Igar~ 196 (276)
T COG5564 124 VGLIDGRMRASLEET-GMGYGLEVEMLREAHAKDLL-TTPYVFSFEE----AQAMTKAGADIIVAHM-GLTTGGLIGARS 196 (276)
T ss_pred eEEecchhhhhHHHh-CcchHHHHHHHHHHHhcccc-ccceecCHHH----HHHHHHcCcceeeecc-cccccceecccc
Confidence 568999998888887 6643100 000 0111122222 1234689999998763 1121111 1112
Q ss_pred CCChHHHHHHHHHHHHHHHHHHH
Q psy17603 73 DLDYDSSYQLIKSSVDYVKEAIA 95 (591)
Q Consensus 73 g~~~~~~~~l~~~av~lA~~a~~ 95 (591)
++|.++..++++...+-+|..++
T Consensus 197 ~~Sl~~~vel~~~~~~aar~v~k 219 (276)
T COG5564 197 ALSLADCVELIELAAEAARGVRK 219 (276)
T ss_pred ccCHHHHHHHHHHHHHHHhhhhh
Confidence 56667777777766666665543
No 288
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=35.15 E-value=2.9e+02 Score=27.36 Aligned_cols=100 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHhcceeeccccccChhchhhhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccccccccccCCCCCcc
Q psy17603 46 RDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASL 125 (591)
Q Consensus 46 ~~yl~AGAdiI~TnTy~as~~~l~~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~va~~~gp~~~~l 125 (591)
+..++||||.|++..+.-......+..++
T Consensus 81 ~~a~~aGA~FivsP~~~~~vi~~a~~~~i--------------------------------------------------- 109 (212)
T PRK05718 81 AQAIEAGAQFIVSPGLTPPLLKAAQEGPI--------------------------------------------------- 109 (212)
T ss_pred HHHHHcCCCEEECCCCCHHHHHHHHHcCC---------------------------------------------------
Q ss_pred CCCCcccCccchhhhhhhHhhhhccccCCCCcceeEeeccCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHc
Q psy17603 126 RDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEA 205 (591)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~ga~l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~a 205 (591)
+++-|..-| .-+....+.
T Consensus 110 ---------------------------------~~iPG~~Tp-----------------------------tEi~~a~~~ 127 (212)
T PRK05718 110 ---------------------------------PLIPGVSTP-----------------------------SELMLGMEL 127 (212)
T ss_pred ---------------------------------CEeCCCCCH-----------------------------HHHHHHHHC
Q ss_pred CCCEEEecccCCHHHH-HHHHHHHH-hcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEE
Q psy17603 206 GADILAIETIPASKEA-QMLCRLLR-EWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVG 273 (591)
Q Consensus 206 GvD~i~~ET~~~~~Ea-~aa~~a~~-~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiG 273 (591)
|+|++-+ ||.-.-. ...++.++ -+|+.|++.+. |.++..+-+.+ ....+.++|
T Consensus 128 Ga~~vKl--FPa~~~gg~~~lk~l~~p~p~~~~~ptG----------GV~~~ni~~~l---~ag~v~~vg 182 (212)
T PRK05718 128 GLRTFKF--FPAEASGGVKMLKALAGPFPDVRFCPTG----------GISPANYRDYL---ALPNVLCIG 182 (212)
T ss_pred CCCEEEE--ccchhccCHHHHHHHhccCCCCeEEEeC----------CCCHHHHHHHH---hCCCEEEEE
No 289
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=34.85 E-value=5.7e+02 Score=26.98 Aligned_cols=23 Identities=9% Similarity=0.164 Sum_probs=14.6
Q ss_pred HHHHHHHHHHc-CCCEEE-ecccCC
Q psy17603 195 HRPRIQALVEA-GADILA-IETIPA 217 (591)
Q Consensus 195 h~~~i~~l~~a-GvD~i~-~ET~~~ 217 (591)
..+.++.++++ |+|+|. ++++++
T Consensus 157 ~i~y~~~qiea~Gad~I~i~Ddwa~ 181 (321)
T cd03309 157 KLKLYERRIKHLEPDLLVYHDDLGS 181 (321)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCcc
Confidence 34445555667 999887 576554
No 290
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=34.82 E-value=3.2e+02 Score=28.36 Aligned_cols=98 Identities=16% Similarity=0.090 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEE-----EecccCC--HHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHH
Q psy17603 186 VSEATMAEWHRPRIQALVEAGADIL-----AIETIPA--SKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVA 258 (591)
Q Consensus 186 ~~~e~l~~~h~~~i~~l~~aGvD~i-----~~ET~~~--~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~ 258 (591)
-+.+.+.+|-+..++.+.+ -|.++ +||.++. +.-.+.+++.+++ .++||++=+-..|= |.+....+
T Consensus 34 ~~~~~~~~f~~~ivd~~~~-~v~~vK~gla~f~~~G~~G~~~l~~~i~~l~~-~g~~VilD~K~~DI-----~nTv~~ya 106 (278)
T PRK00125 34 GDADGLFEFCRIIVDATAD-LVAAFKPQIAYFEAHGAEGLAQLERTIAYLRE-AGVLVIADAKRGDI-----GSTAEAYA 106 (278)
T ss_pred ccHHHHHHHHHHHHHhcCC-cccEEeccHHHHHhcCchhhhHHHHHHHHHHH-CCCcEEEEeecCCh-----HHHHHHHH
Confidence 4567888888877766633 23333 3344431 1122335666666 36788877766553 33445566
Q ss_pred HHHHhhCCCCeEEEEecC-CCchhhHHHHHHHHh
Q psy17603 259 RTCYNMNPDQLIAVGVNC-VRPLMVSSLIEQLKT 291 (591)
Q Consensus 259 ~~~~~~~~~~~~aiGvNC-~~p~~i~~~l~~l~~ 291 (591)
+.+.. ...+++++-+|+ .+.+.+.+.++....
T Consensus 107 ~a~~~-~~~g~DavTVhp~~G~d~l~~~~~~~~~ 139 (278)
T PRK00125 107 KAAFE-SPLEADAVTVSPYMGFDSLEPYLEYAEE 139 (278)
T ss_pred HHHhc-CccCCcEEEECCcCCHHHHHHHHHHHHh
Confidence 66531 035789999998 456777777765543
No 291
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=34.71 E-value=1.5e+02 Score=30.52 Aligned_cols=37 Identities=32% Similarity=0.347 Sum_probs=19.1
Q ss_pred HHcCCCEEEecccCCHHHHHHHHHHHHhc-CCCceEEEE
Q psy17603 203 VEAGADILAIETIPASKEAQMLCRLLREW-PHQKAWLSF 240 (591)
Q Consensus 203 ~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~-~~~pv~vSf 240 (591)
.++|+|+|.+-.|.. .+.+.+++.++.. ++.|+.++.
T Consensus 200 ~~~gaD~I~ld~~~p-~~l~~~~~~~~~~~~~i~i~AsG 237 (272)
T cd01573 200 AEAGADILQLDKFSP-EELAELVPKLRSLAPPVLLAAAG 237 (272)
T ss_pred HHcCCCEEEECCCCH-HHHHHHHHHHhccCCCceEEEEC
Confidence 356667666666543 3445555544432 345555444
No 292
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=34.70 E-value=4.8e+02 Score=28.94 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHHHhcceeeccccccC
Q psy17603 37 AKDAVVQTHRDFIKAGADIVMTNSYQAS 64 (591)
Q Consensus 37 ~Pe~v~~vH~~yl~AGAdiI~TnTy~as 64 (591)
.++..+++- .-++||+|+|...+-+.+
T Consensus 222 ~~~~~~r~~-~L~~aG~d~I~vd~a~g~ 248 (450)
T TIGR01302 222 REFDKERAE-ALVKAGVDVIVIDSSHGH 248 (450)
T ss_pred chhHHHHHH-HHHHhCCCEEEEECCCCc
Confidence 344444443 667889998887776643
No 293
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=34.67 E-value=6.6e+02 Score=27.67 Aligned_cols=80 Identities=8% Similarity=0.014 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEE-----ec-ccCCHHH-HHHHHHHHHh---cCCCceEEEEEecCCCcccCCCCHH
Q psy17603 186 VSEATMAEWHRPRIQALVEAGADILA-----IE-TIPASKE-AQMLCRLLRE---WPHQKAWLSFSCKDDKHISNGESFT 255 (591)
Q Consensus 186 ~~~e~l~~~h~~~i~~l~~aGvD~i~-----~E-T~~~~~E-a~aa~~a~~~---~~~~pv~vSf~~~~~g~l~~G~~~~ 255 (591)
++++++.+..+ .+..+|+|+|- .+ +|.-++| ++++.+++++ -++.+.+-++.+ +|.+..
T Consensus 145 lsp~~~a~~~y----~~~~GGiD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni-------T~~~~~ 213 (414)
T cd08206 145 LSPKEYARVVY----EALRGGLDFVKDDENQNSQPFMRFEDRILFVAEAMDKAEAETGEAKGHYLNI-------TADTPE 213 (414)
T ss_pred CCHHHHHHHHH----HHHhcCCcccccCccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEecc-------CCCcHH
Confidence 67777665544 56778999873 22 3333433 4455555552 256655545533 233345
Q ss_pred HHHHHHHhhCCCCeEEEEecC
Q psy17603 256 QVARTCYNMNPDQLIAVGVNC 276 (591)
Q Consensus 256 ~~~~~~~~~~~~~~~aiGvNC 276 (591)
+..+........+..++.+|.
T Consensus 214 em~~ra~~~~~~G~~~~mv~~ 234 (414)
T cd08206 214 EMIKRAEFAKELGSVIVMVDG 234 (414)
T ss_pred HHHHHHHHHHHhCCcEEEEee
Confidence 555554322234455555554
No 294
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=34.52 E-value=2.9e+02 Score=29.40 Aligned_cols=35 Identities=14% Similarity=0.022 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcCCcEEeecCCC---CHHHHHHHHHHhhhc
Q psy17603 370 EPVDKYVTDWLDEGVALVGGCCRT---YAEDTLHMKHRLDDW 408 (591)
Q Consensus 370 ~~~~~~~~~~~~~Gv~~VGgcCgt---gP~~i~~l~~~l~~~ 408 (591)
+++.+++ ..|+++|.++=+. ||.-+..+.+.|...
T Consensus 302 eda~e~l----~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~ 339 (344)
T PRK05286 302 EDAYEKI----RAGASLVQIYSGLIYEGPGLVKEIVRGLARL 339 (344)
T ss_pred HHHHHHH----HcCCCHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 4454443 4799999887665 688888887777553
No 295
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=34.15 E-value=7.4e+02 Score=28.11 Aligned_cols=42 Identities=12% Similarity=0.003 Sum_probs=33.0
Q ss_pred CChHHHHHHHHHHHhcCCcEEeecCC---CCHHHHHHHHHHhhhc
Q psy17603 367 DLCEPVDKYVTDWLDEGVALVGGCCR---TYAEDTLHMKHRLDDW 408 (591)
Q Consensus 367 ~~~~~~~~~~~~~~~~Gv~~VGgcCg---tgP~~i~~l~~~l~~~ 408 (591)
.+++.+.+.++.+.+.|++.|.+|=. ..|..+..+++.+++.
T Consensus 155 ~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~ 199 (524)
T PRK12344 155 ANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAA 199 (524)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHh
Confidence 45677888888888999998876622 4799999999988765
No 296
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=33.97 E-value=2.5e+02 Score=28.68 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=25.7
Q ss_pred CCCCCCCCCcchhhhc-cCHHHHHHHHHHHHHHhcceeeccccccC
Q psy17603 20 GDIIDGHPLWSSYFLA-TAKDAVVQTHRDFIKAGADIVMTNSYQAS 64 (591)
Q Consensus 20 g~~~~~~~lWs~~~l~-~~Pe~v~~vH~~yl~AGAdiI~TnTy~as 64 (591)
|+.++ +|++.+.-.. .+.+.++.+ .++|+..|+|-|....
T Consensus 5 G~~~~-nPv~~aag~~~~~~~~~~~~----~~~g~g~vv~kti~~~ 45 (289)
T cd02810 5 GLKLK-NPFGVAAGPLLKTGELIARA----AAAGFGAVVYKTVTLH 45 (289)
T ss_pred CEECC-CCCEeCCCCCCCCHHHHHHH----HHcCCCeEEeCcccCC
Confidence 56664 5676543333 677776654 4578888888887654
No 297
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.91 E-value=1.4e+02 Score=31.16 Aligned_cols=33 Identities=9% Similarity=0.193 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHH
Q psy17603 196 RPRIQALVEAGADILAIETIPASKEAQMLCRLLR 229 (591)
Q Consensus 196 ~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~ 229 (591)
.+|++..+++|+|+|.+..|+ .++++.+++.++
T Consensus 215 leea~eA~~aGaDiImLDnms-pe~l~~av~~~~ 247 (294)
T PRK06978 215 LAQLETALAHGAQSVLLDNFT-LDMMREAVRVTA 247 (294)
T ss_pred HHHHHHHHHcCCCEEEECCCC-HHHHHHHHHhhc
Confidence 345556678999999999985 677777777654
No 298
>PRK12999 pyruvate carboxylase; Reviewed
Probab=33.52 E-value=7.8e+02 Score=30.97 Aligned_cols=88 Identities=15% Similarity=0.221 Sum_probs=51.6
Q ss_pred HHHHHHcCCCEE-EecccCCHHHHHHHHHHHHhcCCCceEEEEEec----CCCcccCCCCHH---HHHHHHHhhCCCCeE
Q psy17603 199 IQALVEAGADIL-AIETIPASKEAQMLCRLLREWPHQKAWLSFSCK----DDKHISNGESFT---QVARTCYNMNPDQLI 270 (591)
Q Consensus 199 i~~l~~aGvD~i-~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~----~~g~l~~G~~~~---~~~~~~~~~~~~~~~ 270 (591)
++...+.|+|+| +|-.+.++..++.+++++++. +.-+.++++.. +..+. -.++. +.++.+. ..+++
T Consensus 633 i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~-g~~~~~~i~ytg~~~d~~~~--~~~~~~~~~~a~~l~---~~Ga~ 706 (1146)
T PRK12999 633 VREAAAAGIDVFRIFDSLNWVENMRVAIDAVRET-GKIAEAAICYTGDILDPARA--KYDLDYYVDLAKELE---KAGAH 706 (1146)
T ss_pred HHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHc-CCeEEEEEEEEecCCCCCCC--CCCHHHHHHHHHHHH---HcCCC
Confidence 345667899987 555667777778888888874 65555566554 21121 12333 3343332 23445
Q ss_pred EEEec----CCCchhhHHHHHHHHhc
Q psy17603 271 AVGVN----CVRPLMVSSLIEQLKTE 292 (591)
Q Consensus 271 aiGvN----C~~p~~i~~~l~~l~~~ 292 (591)
.|.+- ...|..+..+++.+++.
T Consensus 707 ~i~ikDt~G~l~P~~~~~lv~~lk~~ 732 (1146)
T PRK12999 707 ILAIKDMAGLLKPAAAYELVSALKEE 732 (1146)
T ss_pred EEEECCccCCCCHHHHHHHHHHHHHH
Confidence 45442 24588888888877653
No 299
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=33.37 E-value=1.3e+02 Score=29.76 Aligned_cols=35 Identities=11% Similarity=-0.069 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHhcCCcEEeecCCCCHHHHHHHHH
Q psy17603 369 CEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKH 403 (591)
Q Consensus 369 ~~~~~~~~~~~~~~Gv~~VGgcCgtgP~~i~~l~~ 403 (591)
++.+...++...+.|+++|+....++++.++++.+
T Consensus 142 ~~~i~~~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~ 176 (235)
T cd00958 142 PDLIAYAARIGAELGADIVKTKYTGDAESFKEVVE 176 (235)
T ss_pred HHHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHh
Confidence 45566656666789999999987666677766665
No 300
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=33.34 E-value=5.4e+02 Score=26.30 Aligned_cols=45 Identities=20% Similarity=0.202 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHHhcceeeccccccChhchhhhcCCChHHHHHHHHHHH
Q psy17603 37 AKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQLIKSSV 87 (591)
Q Consensus 37 ~Pe~v~~vH~~yl~AGAdiI~TnTy~as~~~l~~~~g~~~~~~~~l~~~av 87 (591)
+.+..++.-+.++++|.+-|..+--..-.. -++.++-.++.+.++
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~GstGE~~------~Lt~~Er~~l~~~~~ 64 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGSTGEFY------SLTDEERKELLEIVV 64 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESSTTTTGG------GS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccc------cCCHHHHHHHHHHHH
Confidence 457788888888899999766654433222 345666666655444
No 301
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=33.22 E-value=1.4e+02 Score=30.67 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=23.3
Q ss_pred HHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEE
Q psy17603 198 RIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSF 240 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf 240 (591)
+++...++|+|+|.+..|+ ..+.+.+++.++. ..|+.++.
T Consensus 190 ea~~A~~~gaDyI~ld~~~-~e~lk~~v~~~~~--~ipi~AsG 229 (265)
T TIGR00078 190 EAEEAAEAGADIIMLDNMK-PEEIKEAVQLLKG--RVLLEASG 229 (265)
T ss_pred HHHHHHHcCCCEEEECCCC-HHHHHHHHHHhcC--CCcEEEEC
Confidence 3444456788888888865 3555666555432 24555444
No 302
>PRK06498 isocitrate lyase; Provisional
Probab=33.15 E-value=73 Score=35.53 Aligned_cols=32 Identities=38% Similarity=0.523 Sum_probs=27.6
Q ss_pred HcCCCEEEecc-cCCHHHHHHHHHHHHh-cCCCc
Q psy17603 204 EAGADILAIET-IPASKEAQMLCRLLRE-WPHQK 235 (591)
Q Consensus 204 ~aGvD~i~~ET-~~~~~Ea~aa~~a~~~-~~~~p 235 (591)
..++|+|++|| -|++.+++...+.+++ +|+++
T Consensus 343 apyADLlW~ET~~P~~~qa~~fa~~Ir~~~P~~~ 376 (531)
T PRK06498 343 QNGADLLWIETEKPHVAQIAGMVNRIREVVPNAK 376 (531)
T ss_pred cCcCcEEEecCCCCCHHHHHHHHHHHHHHCCCCe
Confidence 57999999999 8999999999999994 56653
No 303
>KOG2368|consensus
Probab=32.78 E-value=3.7e+02 Score=27.17 Aligned_cols=39 Identities=13% Similarity=0.034 Sum_probs=28.4
Q ss_pred CChHHHHHHHHHHHhcCC------cEEeecCCCCHHHHHHHHHHhhhc
Q psy17603 367 DLCEPVDKYVTDWLDEGV------ALVGGCCRTYAEDTLHMKHRLDDW 408 (591)
Q Consensus 367 ~~~~~~~~~~~~~~~~Gv------~~VGgcCgtgP~~i~~l~~~l~~~ 408 (591)
..|+.+++.++++.++|. +-||. .+|..|+.+++.+-..
T Consensus 166 v~P~kVa~V~k~ly~mGCyEiSLGDTIGv---GTpgtm~~ML~~Vmk~ 210 (316)
T KOG2368|consen 166 VQPSKVAEVVKKLYEMGCYEISLGDTIGV---GTPGTMKRMLDAVMKV 210 (316)
T ss_pred cCHHHHHHHHHHHHhCCcEEEeccccccc---CCchhHHHHHHHHHHh
Confidence 457889999999999983 34454 3688898888876443
No 304
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.68 E-value=1.6e+02 Score=30.69 Aligned_cols=32 Identities=16% Similarity=0.356 Sum_probs=23.9
Q ss_pred HHHHHHHHcCCCEEEecccCCHHHHHHHHHHHH
Q psy17603 197 PRIQALVEAGADILAIETIPASKEAQMLCRLLR 229 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~ 229 (591)
++++..+++|+|+|.+..|+ ..+++.+++.++
T Consensus 204 ee~~ea~~~gaDiImLDn~s-~e~l~~av~~~~ 235 (281)
T PRK06543 204 DQIEPVLAAGVDTIMLDNFS-LDDLREGVELVD 235 (281)
T ss_pred HHHHHHHhcCCCEEEECCCC-HHHHHHHHHHhC
Confidence 34455567899999999985 777777777665
No 305
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=32.09 E-value=3.4e+02 Score=27.96 Aligned_cols=109 Identities=16% Similarity=0.229 Sum_probs=51.4
Q ss_pred ceeEeeccCCCCCCCCCCCCCCCCcCCCCCHHHH-HHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCce
Q psy17603 158 DILIAGSVGPYGASLRDGSEYRGDYVEHVSEATM-AEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKA 236 (591)
Q Consensus 158 ~~~VagsiGP~ga~l~~g~eY~g~y~~~~~~e~l-~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv 236 (591)
+.+|.+.+ ||+++ +.+.++. +...+ .+.++|+|.+-+|--....+ .++++-+ .+.||
T Consensus 77 ~~~vv~Dm-Pf~sy-------------~~s~e~av~nA~r----l~ke~GadaVKlEGg~~~~~---~i~~l~~-~GIPV 134 (261)
T PF02548_consen 77 NAFVVADM-PFGSY-------------QASPEQAVRNAGR----LMKEAGADAVKLEGGAEIAE---TIKALVD-AGIPV 134 (261)
T ss_dssp SSEEEEE---TTSS-------------TSSHHHHHHHHHH----HHHTTT-SEEEEEBSGGGHH---HHHHHHH-TT--E
T ss_pred CceEEecC-Ccccc-------------cCCHHHHHHHHHH----HHHhcCCCEEEeccchhHHH---HHHHHHH-CCCcE
Confidence 47888887 65542 1244443 33333 34459999999997543322 3333433 48898
Q ss_pred EEEEEecC------CCcccCCCCHHHHHHHHH---hhCCCCeEEEEecCCCchhhHHHHHH
Q psy17603 237 WLSFSCKD------DKHISNGESFTQVARTCY---NMNPDQLIAVGVNCVRPLMVSSLIEQ 288 (591)
Q Consensus 237 ~vSf~~~~------~g~l~~G~~~~~~~~~~~---~~~~~~~~aiGvNC~~p~~i~~~l~~ 288 (591)
+--+=+.| .|.-.-|.+.+++.+.+. ..+..+..+|=+-|+..+....+-+.
T Consensus 135 ~gHiGLtPQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~AGaf~ivlE~vp~~la~~It~~ 195 (261)
T PF02548_consen 135 MGHIGLTPQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEAGAFAIVLECVPAELAKAITEA 195 (261)
T ss_dssp EEEEES-GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHHT-SEEEEESBBHHHHHHHHHH
T ss_pred EEEecCchhheeccCCceEEecCHHHHHHHHHHHHHHHHcCccEEeeecCHHHHHHHHHHh
Confidence 86554333 122234555544433332 12234566666666655544444333
No 306
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=31.97 E-value=2.4e+02 Score=29.28 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=23.0
Q ss_pred HHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHh
Q psy17603 197 PRIQALVEAGADILAIETIPASKEAQMLCRLLRE 230 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~ 230 (591)
+|++..+++|+|+|.+..|+ ..+.+.+++.+++
T Consensus 199 eea~ea~~~GaDiI~lDn~~-~e~l~~~v~~l~~ 231 (277)
T TIGR01334 199 EQALTVLQASPDILQLDKFT-PQQLHHLHERLKF 231 (277)
T ss_pred HHHHHHHHcCcCEEEECCCC-HHHHHHHHHHHhc
Confidence 34555567888888888864 6677777777653
No 307
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=31.96 E-value=33 Score=36.01 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.9
Q ss_pred ccCHHHHHHHHHHHHHHhcceeecc
Q psy17603 35 ATAKDAVVQTHRDFIKAGADIVMTN 59 (591)
Q Consensus 35 ~~~Pe~v~~vH~~yl~AGAdiI~Tn 59 (591)
++..++|.+.+..+-+||||+|+|.
T Consensus 286 ~d~~~~~~Esl~~ikRAGAd~IiTY 310 (320)
T cd04823 286 LDEDKVMLESLLAFKRAGADGILTY 310 (320)
T ss_pred CcHHHHHHHHHHHHHhcCCCEEeec
Confidence 4557899999999999999999974
No 308
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=31.95 E-value=7.9e+02 Score=27.78 Aligned_cols=85 Identities=7% Similarity=0.185 Sum_probs=51.1
Q ss_pred HHHHcCCCEE-EecccCCHHHHHHHHHHHHhcCCCce--EEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEec--
Q psy17603 201 ALVEAGADIL-AIETIPASKEAQMLCRLLREWPHQKA--WLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVN-- 275 (591)
Q Consensus 201 ~l~~aGvD~i-~~ET~~~~~Ea~aa~~a~~~~~~~pv--~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvN-- 275 (591)
...+.|+|+| +|-.+.++.-.+.+++++++. +.-+ .|+++..+. .+++..++.+......+++.|.+-
T Consensus 105 ~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~a-g~~~~~~i~yt~sp~------~t~e~~~~~a~~l~~~Gad~I~IkDt 177 (499)
T PRK12330 105 KSAENGMDVFRVFDALNDPRNLEHAMKAVKKV-GKHAQGTICYTVSPI------HTVEGFVEQAKRLLDMGADSICIKDM 177 (499)
T ss_pred HHHHcCCCEEEEEecCChHHHHHHHHHHHHHh-CCeEEEEEEEecCCC------CCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 4567899997 566677788888888888864 3333 445554431 133333333322223455555542
Q ss_pred --CCCchhhHHHHHHHHhc
Q psy17603 276 --CVRPLMVSSLIEQLKTE 292 (591)
Q Consensus 276 --C~~p~~i~~~l~~l~~~ 292 (591)
+..|..+..+++.+++.
T Consensus 178 aGll~P~~~~~LV~~Lk~~ 196 (499)
T PRK12330 178 AALLKPQPAYDIVKGIKEA 196 (499)
T ss_pred ccCCCHHHHHHHHHHHHHh
Confidence 25588888888888754
No 309
>COG2224 AceA Isocitrate lyase [Energy production and conversion]
Probab=31.81 E-value=85 Score=34.09 Aligned_cols=61 Identities=23% Similarity=0.364 Sum_probs=42.5
Q ss_pred Cccceeec-ccccHHHHHHHHHHhhc-cccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHh
Q psy17603 304 EHILAIET-IPASKEAQMLCRLLREW-PNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLD 381 (591)
Q Consensus 304 ~D~l~iET-~~d~~E~~~a~~~~~~~-~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 381 (591)
+|++++|| -||++++|.-.+++++. |+ -+++|-++ .+|+ |....+.+.++.+.+++.+
T Consensus 284 aDl~W~ET~~Pdle~ak~Fae~Ih~~~P~--------------~~LaYN~S-PSFN-----W~~~~~de~i~~Fq~el~~ 343 (433)
T COG2224 284 ADLLWCETSTPDLEEARQFAEAIHAKYPG--------------KLLAYNCS-PSFN-----WKKNLDDETIAKFQQELGK 343 (433)
T ss_pred cceEEEecCCCCHHHHHHHHHHHHHhCCc--------------ceeeecCC-CCcC-----cccccCHHHHHHHHHHHHh
Confidence 49999999 68999999999999874 31 13444332 3342 4434446788888888888
Q ss_pred cCC
Q psy17603 382 EGV 384 (591)
Q Consensus 382 ~Gv 384 (591)
+|.
T Consensus 344 mG~ 346 (433)
T COG2224 344 MGY 346 (433)
T ss_pred hee
Confidence 874
No 310
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=31.79 E-value=3.2e+02 Score=28.18 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhh
Q psy17603 254 FTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLRE 327 (591)
Q Consensus 254 ~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~ 327 (591)
..++++.+....+ . .-||+-|..++.+..++ ++|+|.+.+-+|+. .+++.+++.++.
T Consensus 170 ~~~av~~~R~~~~-~-~~IgVev~t~eea~~A~--------------~~gaD~I~ld~~~p-~~l~~~~~~~~~ 226 (272)
T cd01573 170 PLKALARLRATAP-E-KKIVVEVDSLEEALAAA--------------EAGADILQLDKFSP-EELAELVPKLRS 226 (272)
T ss_pred HHHHHHHHHHhCC-C-CeEEEEcCCHHHHHHHH--------------HcCCCEEEECCCCH-HHHHHHHHHHhc
Confidence 3566666654322 2 25788887765544432 25788888888755 566666666654
No 311
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=31.79 E-value=3.3e+02 Score=27.95 Aligned_cols=86 Identities=13% Similarity=0.261 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhcccccc
Q psy17603 254 FTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKA 333 (591)
Q Consensus 254 ~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~~ 333 (591)
+..+++.+....+.. .-||+.|-..+.+..++ ++|+|.+.+.+|+- ++++.+++.++.
T Consensus 164 ~~~av~~~r~~~~~~-~~Igvev~t~eea~~A~--------------~~gaDyI~ld~~~~-e~lk~~v~~~~~------ 221 (265)
T TIGR00078 164 IEKAVKRARAAAPFA-LKIEVEVESLEEAEEAA--------------EAGADIIMLDNMKP-EEIKEAVQLLKG------ 221 (265)
T ss_pred HHHHHHHHHHhCCCC-CeEEEEeCCHHHHHHHH--------------HcCCCEEEECCCCH-HHHHHHHHHhcC------
Confidence 556666665432222 34888887665544332 25899999998765 667776665431
Q ss_pred ccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEee
Q psy17603 334 WLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGG 389 (591)
Q Consensus 334 ~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGg 389 (591)
.+|+.+. + |.+++.+.++ .+.|++.|..
T Consensus 222 ---------~ipi~As--G-------------GI~~~ni~~~----a~~Gvd~Isv 249 (265)
T TIGR00078 222 ---------RVLLEAS--G-------------GITLDNLEEY----AETGVDVISS 249 (265)
T ss_pred ---------CCcEEEE--C-------------CCCHHHHHHH----HHcCCCEEEe
Confidence 2566652 1 2333455554 4689998887
No 312
>PRK07094 biotin synthase; Provisional
Probab=31.56 E-value=6.1e+02 Score=26.34 Aligned_cols=45 Identities=9% Similarity=0.122 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEec----ccCCHHHHHHHHHHHHhcCCC
Q psy17603 186 VSEATMAEWHRPRIQALVEAGADILAIE----TIPASKEAQMLCRLLREWPHQ 234 (591)
Q Consensus 186 ~~~e~l~~~h~~~i~~l~~aGvD~i~~E----T~~~~~Ea~aa~~a~~~~~~~ 234 (591)
++.+++.+.-+ .+.+.|++-|.+- .....+....+++.+++.++.
T Consensus 70 ls~eei~~~~~----~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l 118 (323)
T PRK07094 70 LSPEEILECAK----KAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKELDV 118 (323)
T ss_pred CCHHHHHHHHH----HHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHccCCc
Confidence 57788776543 4556799877763 222356667777777753343
No 313
>KOG2794|consensus
Probab=31.42 E-value=34 Score=35.01 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=21.4
Q ss_pred ccCHHHHHHHHHHHHHHhcceeecc
Q psy17603 35 ATAKDAVVQTHRDFIKAGADIVMTN 59 (591)
Q Consensus 35 ~~~Pe~v~~vH~~yl~AGAdiI~Tn 59 (591)
++-..+|-+.|.-|.+||||||+|.
T Consensus 303 ~Dlk~~vmEsm~~frRAGAdiIlTY 327 (340)
T KOG2794|consen 303 FDLKKVVMESMLGFRRAGADIILTY 327 (340)
T ss_pred ccHHHHHHHHHHHHHhcCCcEEEee
Confidence 3456789999999999999999974
No 314
>PRK06498 isocitrate lyase; Provisional
Probab=31.41 E-value=1.1e+02 Score=34.17 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=25.1
Q ss_pred CCCCccceeec-ccccHHHHHHHHHHhhc
Q psy17603 301 NSGEHILAIET-IPASKEAQMLCRLLREW 328 (591)
Q Consensus 301 ~aG~D~l~iET-~~d~~E~~~a~~~~~~~ 328 (591)
..|+|++++|| -|++.+++.-...+++.
T Consensus 343 apyADLlW~ET~~P~~~qa~~fa~~Ir~~ 371 (531)
T PRK06498 343 QNGADLLWIETEKPHVAQIAGMVNRIREV 371 (531)
T ss_pred cCcCcEEEecCCCCCHHHHHHHHHHHHHH
Confidence 45799999999 89999999999999874
No 315
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=31.33 E-value=7.4e+02 Score=27.22 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEE-----Eec-ccCCHHH-HHHHHHHHHh---cCCCceEEEEEe
Q psy17603 186 VSEATMAEWHRPRIQALVEAGADIL-----AIE-TIPASKE-AQMLCRLLRE---WPHQKAWLSFSC 242 (591)
Q Consensus 186 ~~~e~l~~~h~~~i~~l~~aGvD~i-----~~E-T~~~~~E-a~aa~~a~~~---~~~~pv~vSf~~ 242 (591)
++++++.+..+ .+..+|+|+| +.+ +|.-++| ++++.+++++ -++.+.+-++.+
T Consensus 156 lsp~~~a~~~y----~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni 218 (406)
T cd08207 156 LTPEETAALVR----QLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRTGRKVMYAFNI 218 (406)
T ss_pred CCHHHHHHHHH----HHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEec
Confidence 67777666554 5677899996 222 2333333 4555555553 256665555544
No 316
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=31.30 E-value=8.7e+02 Score=28.02 Aligned_cols=87 Identities=14% Similarity=0.181 Sum_probs=48.5
Q ss_pred HHHHcCCCEEEe-cccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEec----
Q psy17603 201 ALVEAGADILAI-ETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVN---- 275 (591)
Q Consensus 201 ~l~~aGvD~i~~-ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvN---- 275 (591)
...++|+|.|-+ -.+++...++.+++++++. +..+-++++...+.. .++...++.+......+++.|.+-
T Consensus 99 ~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~-G~~v~~~i~~t~~p~----~~~~~~~~~~~~~~~~Gad~I~i~Dt~G 173 (582)
T TIGR01108 99 KAVENGMDVFRIFDALNDPRNLQAAIQAAKKH-GAHAQGTISYTTSPV----HTLETYLDLAEELLEMGVDSICIKDMAG 173 (582)
T ss_pred HHHHCCCCEEEEEEecCcHHHHHHHHHHHHHc-CCEEEEEEEeccCCC----CCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 456789998744 4566677788888888874 554443332211111 233333333322222445555441
Q ss_pred CCCchhhHHHHHHHHhc
Q psy17603 276 CVRPLMVSSLIEQLKTE 292 (591)
Q Consensus 276 C~~p~~i~~~l~~l~~~ 292 (591)
+..|..+..+++.+++.
T Consensus 174 ~~~P~~v~~lv~~lk~~ 190 (582)
T TIGR01108 174 ILTPKAAYELVSALKKR 190 (582)
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 25688888888888653
No 317
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=31.24 E-value=6.1e+02 Score=26.20 Aligned_cols=72 Identities=11% Similarity=0.138 Sum_probs=53.4
Q ss_pred HcCCcEEEeecCCcH-HHHHHHHhccccc---------CCCCCCCCCcHHHHHHHhhhcCCCCeeEEEEcCCChhhHHHH
Q psy17603 482 DEGVALVGGCCRTYA-EDTLHMKHRLDDW---------DDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPL 551 (591)
Q Consensus 482 ~~G~~~vgGCcgttp-~~i~~l~~~~~~~---------d~~~l~dG~~l~~~~~~~~~~~~~~~~avGiNC~~p~~v~~~ 551 (591)
+.|...|==|-+||| +.++.+.+.-+++ .+.....-..+.+.++.++.. ...+.++|+-=+.++++.++
T Consensus 145 ~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~-~~~Pv~vGFGIs~~e~~~~v 223 (265)
T COG0159 145 KHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKY-TDVPVLVGFGISSPEQAAQV 223 (265)
T ss_pred HcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHh-cCCCeEEecCcCCHHHHHHH
Confidence 589998888888887 5677787777666 223334344477888888753 35689999999999999998
Q ss_pred HHH
Q psy17603 552 IEQ 554 (591)
Q Consensus 552 i~~ 554 (591)
.+.
T Consensus 224 ~~~ 226 (265)
T COG0159 224 AEA 226 (265)
T ss_pred HHh
Confidence 765
No 318
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=31.12 E-value=8.8e+02 Score=28.03 Aligned_cols=85 Identities=12% Similarity=0.201 Sum_probs=48.5
Q ss_pred HHHHcCCCEEE-ecccCCHHHHHHHHHHHHhcCCCceEE--EEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEec--
Q psy17603 201 ALVEAGADILA-IETIPASKEAQMLCRLLREWPHQKAWL--SFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVN-- 275 (591)
Q Consensus 201 ~l~~aGvD~i~-~ET~~~~~Ea~aa~~a~~~~~~~pv~v--Sf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvN-- 275 (591)
...++|+|+|- |-..+++..++.+++++++. +..+-+ +++..+ . .++...++.+......+++.|.+-
T Consensus 104 ~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~-G~~v~~~i~~t~~p--~----~t~~~~~~~a~~l~~~Gad~I~i~Dt 176 (592)
T PRK09282 104 KAAENGIDIFRIFDALNDVRNMEVAIKAAKKA-GAHVQGTISYTTSP--V----HTIEKYVELAKELEEMGCDSICIKDM 176 (592)
T ss_pred HHHHCCCCEEEEEEecChHHHHHHHHHHHHHc-CCEEEEEEEeccCC--C----CCHHHHHHHHHHHHHcCCCEEEECCc
Confidence 34678999874 44566777778888888863 444433 333322 1 234433333322223455555441
Q ss_pred --CCCchhhHHHHHHHHhc
Q psy17603 276 --CVRPLMVSSLIEQLKTE 292 (591)
Q Consensus 276 --C~~p~~i~~~l~~l~~~ 292 (591)
+..|..+..+++.+++.
T Consensus 177 ~G~~~P~~~~~lv~~lk~~ 195 (592)
T PRK09282 177 AGLLTPYAAYELVKALKEE 195 (592)
T ss_pred CCCcCHHHHHHHHHHHHHh
Confidence 24588888888887653
No 319
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=31.10 E-value=3.1e+02 Score=28.51 Aligned_cols=67 Identities=18% Similarity=0.265 Sum_probs=41.4
Q ss_pred ecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHH
Q psy17603 242 CKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQML 321 (591)
Q Consensus 242 ~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a 321 (591)
++++..-.-| +++++++.+.... +...-|-|-|-+++.+.+++ ++|+|++++-.|+ ++|++.|
T Consensus 163 iKDNHia~~g-~i~~Av~~aR~~~-~~~~kIEVEvesle~~~eAl--------------~agaDiImLDNm~-~e~~~~a 225 (280)
T COG0157 163 IKDNHIAAAG-SITEAVRRARAAA-PFTKKIEVEVESLEEAEEAL--------------EAGADIIMLDNMS-PEELKEA 225 (280)
T ss_pred ehhhHHHHhc-cHHHHHHHHHHhC-CCCceEEEEcCCHHHHHHHH--------------HcCCCEEEecCCC-HHHHHHH
Confidence 4544444456 7888888876422 22233555554444443332 3789999998886 5788888
Q ss_pred HHHH
Q psy17603 322 CRLL 325 (591)
Q Consensus 322 ~~~~ 325 (591)
+...
T Consensus 226 v~~l 229 (280)
T COG0157 226 VKLL 229 (280)
T ss_pred HHHh
Confidence 7775
No 320
>PRK07094 biotin synthase; Provisional
Probab=30.88 E-value=2.5e+02 Score=29.24 Aligned_cols=77 Identities=21% Similarity=0.182 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCCEE--EecccC-----------CHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHh
Q psy17603 197 PRIQALVEAGADIL--AIETIP-----------ASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYN 263 (591)
Q Consensus 197 ~~i~~l~~aGvD~i--~~ET~~-----------~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~ 263 (591)
+.++.|.++|+|.+ -+||+. +..+...+++.+++. +.++...+.++- .|++.++..+.+.-
T Consensus 130 e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~-Gi~v~~~~iiGl-----pget~ed~~~~l~~ 203 (323)
T PRK07094 130 EEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKEL-GYEVGSGFMVGL-----PGQTLEDLADDILF 203 (323)
T ss_pred HHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHc-CCeecceEEEEC-----CCCCHHHHHHHHHH
Confidence 44556778999965 357763 234555566666663 666666666652 35666666655433
Q ss_pred hCCCCeEEEEecCCCc
Q psy17603 264 MNPDQLIAVGVNCVRP 279 (591)
Q Consensus 264 ~~~~~~~aiGvNC~~p 279 (591)
....++..++++-..|
T Consensus 204 l~~l~~~~v~~~~~~P 219 (323)
T PRK07094 204 LKELDLDMIGIGPFIP 219 (323)
T ss_pred HHhCCCCeeeeecccc
Confidence 3334566777776444
No 321
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=30.79 E-value=35 Score=35.75 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=22.1
Q ss_pred ccCHHHHHHHHHHHHHHhcceeecc
Q psy17603 35 ATAKDAVVQTHRDFIKAGADIVMTN 59 (591)
Q Consensus 35 ~~~Pe~v~~vH~~yl~AGAdiI~Tn 59 (591)
++..+++.+.+..+-+||||+|+|.
T Consensus 287 iDe~~~~~Esl~~ikRAGAd~IiTY 311 (320)
T cd04824 287 FDLKRAVLEAMTGFRRAGADIIITY 311 (320)
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEee
Confidence 4567899999999999999999974
No 322
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=30.76 E-value=2.8e+02 Score=26.88 Aligned_cols=17 Identities=35% Similarity=0.333 Sum_probs=12.0
Q ss_pred HHHHHHHcCCCEEEecc
Q psy17603 198 RIQALVEAGADILAIET 214 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~ET 214 (591)
.++...+.|||++=|=.
T Consensus 11 d~~~a~~~Gvd~ig~i~ 27 (203)
T cd00405 11 DALAAAEAGADAIGFIF 27 (203)
T ss_pred HHHHHHHcCCCEEEEec
Confidence 45566789999975543
No 323
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=30.67 E-value=4.2e+02 Score=27.68 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcCCcEEeecCCC
Q psy17603 370 EPVDKYVTDWLDEGVALVGGCCRT 393 (591)
Q Consensus 370 ~~~~~~~~~~~~~Gv~~VGgcCgt 393 (591)
.++.+..+...+.|..+||=||..
T Consensus 103 ~D~~~~~~~a~~~g~~iiGPncpG 126 (293)
T COG0074 103 LDMLELKRYAREKGTRLIGPNCPG 126 (293)
T ss_pred HHHHHHHHHHHhcCCEEECCCCCc
Confidence 455666666668899999999974
No 324
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=30.48 E-value=37 Score=35.68 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=22.1
Q ss_pred ccCHHHHHHHHHHHHHHhcceeecc
Q psy17603 35 ATAKDAVVQTHRDFIKAGADIVMTN 59 (591)
Q Consensus 35 ~~~Pe~v~~vH~~yl~AGAdiI~Tn 59 (591)
++..+++.+.+..|-+||||+|+|.
T Consensus 290 ~d~~~~~~Esl~~~kRAGAd~IiTY 314 (322)
T PRK13384 290 LDERAVVTETLGGLKRAGADLIVSY 314 (322)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEeeh
Confidence 4567899999999999999999974
No 325
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=30.32 E-value=1.5e+02 Score=31.77 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=36.2
Q ss_pred CcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCCCCHHHHHHHHHHhhh
Q psy17603 343 NIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDD 407 (591)
Q Consensus 343 ~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCgtgP~~i~~l~~~l~~ 407 (591)
++|+++..|++...-. .......+...+++.+.+|+++||..+-.|.++-.+.++.+..
T Consensus 125 ~iplIlkln~~t~l~~------~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~ 183 (348)
T PRK09250 125 KIPFILKLNHNELLSY------PNTYDQALTASVEDALRLGAVAVGATIYFGSEESRRQIEEISE 183 (348)
T ss_pred CCCEEEEeCCCCCCCC------CCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHH
Confidence 5789988887643200 0000122333355567899999999998887666555555554
No 326
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=30.26 E-value=6.9e+02 Score=27.52 Aligned_cols=59 Identities=12% Similarity=-0.017 Sum_probs=32.3
Q ss_pred CcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcE-----EeecCCCCHHHHHHHHHHhhh
Q psy17603 343 NIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVAL-----VGGCCRTYAEDTLHMKHRLDD 407 (591)
Q Consensus 343 ~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~-----VGgcCgtgP~~i~~l~~~l~~ 407 (591)
++||+++++..-.|... -..|.+...+.+.. .=.|+|. ++|.=...++....+.+.++.
T Consensus 251 ~l~ihaHra~~ga~~r~---~~~Gis~~~l~kl~---RLaGaD~ih~~t~~Gk~~~~~~~~~~~~~~l~~ 314 (412)
T cd08213 251 GLAIHAHRAMHAAFTRN---PRHGISMLVLAKLY---RLIGVDQLHIGTAVGKMEGDKEEVLRIADILRE 314 (412)
T ss_pred CeEEEECCCcceecccC---CcCcCcHHHHHHHH---HHcCCCccccCCccCCcCCCHHHHHHHHHHHHh
Confidence 57889888865444221 11233333333333 2346544 345555567778888887764
No 327
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=29.47 E-value=39 Score=35.36 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=21.7
Q ss_pred ccCHHHHHHHHHHHHHHhcceeecc
Q psy17603 35 ATAKDAVVQTHRDFIKAGADIVMTN 59 (591)
Q Consensus 35 ~~~Pe~v~~vH~~yl~AGAdiI~Tn 59 (591)
++...+|.+.+..|-+||||+|.|.
T Consensus 281 id~~~~~~Esl~~~kRAGAd~IiTY 305 (314)
T cd00384 281 IDEERVVLESLTSIKRAGADLIITY 305 (314)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEee
Confidence 3556789999999999999999974
No 328
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=29.39 E-value=7.5e+02 Score=26.69 Aligned_cols=79 Identities=18% Similarity=0.097 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEE-EecccCC-----HHH-HHHHHHHHHh---cCCCceEEEEEecCCCcccCCCCHH
Q psy17603 186 VSEATMAEWHRPRIQALVEAGADIL-AIETIPA-----SKE-AQMLCRLLRE---WPHQKAWLSFSCKDDKHISNGESFT 255 (591)
Q Consensus 186 ~~~e~l~~~h~~~i~~l~~aGvD~i-~~ET~~~-----~~E-a~aa~~a~~~---~~~~pv~vSf~~~~~g~l~~G~~~~ 255 (591)
++++++.+. +..+..+|+|+| --|.+.+ .+| ++++.+++++ -++..+...+.+. +. ..
T Consensus 138 L~~~~~a~~----~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nit-------a~-~~ 205 (364)
T cd08210 138 LSAAELAEL----AYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVT-------GP-PT 205 (364)
T ss_pred CCHHHHHHH----HHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecC-------CC-HH
Confidence 566665544 446778999998 3344333 233 3444444442 2444444444331 22 33
Q ss_pred HHHHHHHhhCCCCeEEEEecC
Q psy17603 256 QVARTCYNMNPDQLIAVGVNC 276 (591)
Q Consensus 256 ~~~~~~~~~~~~~~~aiGvNC 276 (591)
++.+........+..++.+|-
T Consensus 206 em~~ra~~a~~~Ga~~vMv~~ 226 (364)
T cd08210 206 QLLERARFAKEAGAGGVLIAP 226 (364)
T ss_pred HHHHHHHHHHHcCCCEEEeec
Confidence 555554332334555666654
No 329
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=29.18 E-value=5.7e+02 Score=26.90 Aligned_cols=74 Identities=14% Similarity=0.099 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHcCCCEEEecc-cCCH---------HHHHHHHHHHHhcCC-----CceEEEEEecCCCcccCCCCHH
Q psy17603 191 MAEWHRPRIQALVEAGADILAIET-IPAS---------KEAQMLCRLLREWPH-----QKAWLSFSCKDDKHISNGESFT 255 (591)
Q Consensus 191 l~~~h~~~i~~l~~aGvD~i~~ET-~~~~---------~Ea~aa~~a~~~~~~-----~pv~vSf~~~~~g~l~~G~~~~ 255 (591)
..+-|.+.++.+. .++|.|.++- .|+. ..+..+++++++..+ .|++|-++... +-+.+.
T Consensus 146 ~~~d~~~~~~~~~-~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~-----~~~~~~ 219 (327)
T cd04738 146 AVEDYVIGVRKLG-PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDL-----SDEELE 219 (327)
T ss_pred cHHHHHHHHHHHH-hhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCC-----CHHHHH
Confidence 3344555555543 3599998874 3322 345666777775433 79888875321 112344
Q ss_pred HHHHHHHhhCCCCeEEEE
Q psy17603 256 QVARTCYNMNPDQLIAVG 273 (591)
Q Consensus 256 ~~~~~~~~~~~~~~~aiG 273 (591)
++++.+.+ .++++|-
T Consensus 220 ~ia~~l~~---aGad~I~ 234 (327)
T cd04738 220 DIADVALE---HGVDGII 234 (327)
T ss_pred HHHHHHHH---cCCcEEE
Confidence 55555432 4555554
No 330
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=29.12 E-value=6.1e+02 Score=26.12 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=58.4
Q ss_pred HHHHHHHHcCCCEEEecccCCHH---HHHHHHHHHHhcCCCceEEEEEec-CCC--cc-------cCCCCHHHHHHHHHh
Q psy17603 197 PRIQALVEAGADILAIETIPASK---EAQMLCRLLREWPHQKAWLSFSCK-DDK--HI-------SNGESFTQVARTCYN 263 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET~~~~~---Ea~aa~~a~~~~~~~pv~vSf~~~-~~g--~l-------~~G~~~~~~~~~~~~ 263 (591)
++++.+++.|||-+++.|.--.. .-.-+.+++++|....++++..++ .+| +. .++.++.+.+..+.+
T Consensus 95 e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~ 174 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLA 174 (262)
T ss_pred HHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHH
Confidence 56777889999999999964221 023344566667556788999886 123 21 245677787666644
Q ss_pred hCCCCeEEEEecC----CCchhhHHHHHHHHhcCCceEEecCCCC
Q psy17603 264 MNPDQLIAVGVNC----VRPLMVSSLIEQLKTENIPLVVYPNSGE 304 (591)
Q Consensus 264 ~~~~~~~aiGvNC----~~p~~i~~~l~~l~~~~~~i~~l~~aG~ 304 (591)
.....+..--|++ .+|. ..+++.+.+. -.+-..+.+|+
T Consensus 175 ~g~~eii~TdI~rDGtl~G~d--~el~~~l~~~-~~ipVIASGGv 216 (262)
T PLN02446 175 AYCDEFLVHGVDVEGKRLGID--EELVALLGEH-SPIPVTYAGGV 216 (262)
T ss_pred hCCCEEEEEEEcCCCcccCCC--HHHHHHHHhh-CCCCEEEECCC
Confidence 3223333333433 3343 2334444432 12344556775
No 331
>PLN02591 tryptophan synthase
Probab=29.10 E-value=6.3e+02 Score=25.72 Aligned_cols=104 Identities=11% Similarity=0.108 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCCEEEecc-cCCH-------H--------------HHHHHHHHHHhcCCCceEEEEEecCCCcccCCC
Q psy17603 195 HRPRIQALVEAGADILAIET-IPAS-------K--------------EAQMLCRLLREWPHQKAWLSFSCKDDKHISNGE 252 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET-~~~~-------~--------------Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~ 252 (591)
..+.++.|.++|||+|-+-= |++. . .....++.+|+..+.|++ -|+..+. -+..|
T Consensus 18 ~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~i-lm~Y~N~-i~~~G- 94 (250)
T PLN02591 18 TAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIV-LFTYYNP-ILKRG- 94 (250)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEE-EEecccH-HHHhH-
Confidence 44556688999999996652 3331 1 112222223322456754 4444321 11223
Q ss_pred CHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeeccccc
Q psy17603 253 SFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPAS 315 (591)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~ 315 (591)
+++.++.+.+ .+++++-+.=..++...++.+.++++ |.+.+.+=|-...
T Consensus 95 -~~~F~~~~~~---aGv~GviipDLP~ee~~~~~~~~~~~----------gl~~I~lv~Ptt~ 143 (250)
T PLN02591 95 -IDKFMATIKE---AGVHGLVVPDLPLEETEALRAEAAKN----------GIELVLLTTPTTP 143 (250)
T ss_pred -HHHHHHHHHH---cCCCEEEeCCCCHHHHHHHHHHHHHc----------CCeEEEEeCCCCC
Confidence 4556665543 56677777655667777777766654 4555555444443
No 332
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=29.06 E-value=5.6e+02 Score=25.10 Aligned_cols=115 Identities=16% Similarity=0.245 Sum_probs=55.8
Q ss_pred HHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCC-----C-cccCCCCHHHHHHHHHhhCCCCeEE
Q psy17603 198 RIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDD-----K-HISNGESFTQVARTCYNMNPDQLIA 271 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~-----g-~l~~G~~~~~~~~~~~~~~~~~~~a 271 (591)
+++.+++.|+|.+++-|.-- .....+.++.++++ ..+++++.++.. + .-.+..++.+.++.+.+.....+..
T Consensus 88 d~~~~~~~Ga~~vilg~~~l-~~~~~l~ei~~~~~-~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~ 165 (233)
T PRK00748 88 TVEALLDAGVSRVIIGTAAV-KNPELVKEACKKFP-GKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIY 165 (233)
T ss_pred HHHHHHHcCCCEEEECchHH-hCHHHHHHHHHHhC-CCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEE
Confidence 34455668999988776431 11223444555553 346777776521 1 1112345667777764322233444
Q ss_pred EEecCCCc-h-hhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHH
Q psy17603 272 VGVNCVRP-L-MVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCR 323 (591)
Q Consensus 272 iGvNC~~p-~-~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~ 323 (591)
..++..+. . .-..+++.+.+.. ++-...++|+ .+.++++.+.+
T Consensus 166 ~~~~~~g~~~G~d~~~i~~l~~~~-~ipvia~GGi--------~~~~di~~~~~ 210 (233)
T PRK00748 166 TDISRDGTLSGPNVEATRELAAAV-PIPVIASGGV--------SSLDDIKALKG 210 (233)
T ss_pred eeecCcCCcCCCCHHHHHHHHHhC-CCCEEEeCCC--------CCHHHHHHHHH
Confidence 44443221 0 1123445554431 2445667775 35555554443
No 333
>PRK09389 (R)-citramalate synthase; Provisional
Probab=29.04 E-value=8.7e+02 Score=27.30 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=32.7
Q ss_pred CChHHHHHHHHHHHhcCCcEEeecCC---CCHHHHHHHHHHhhhc
Q psy17603 367 DLCEPVDKYVTDWLDEGVALVGGCCR---TYAEDTLHMKHRLDDW 408 (591)
Q Consensus 367 ~~~~~~~~~~~~~~~~Gv~~VGgcCg---tgP~~i~~l~~~l~~~ 408 (591)
.+++.+.+.++.+.+.|++.|.+|=. ..|..+..+.+.++..
T Consensus 140 ~~~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~ 184 (488)
T PRK09389 140 ADLDFLKELYKAGIEAGADRICFCDTVGILTPEKTYELFKRLSEL 184 (488)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 45677888888888999988876533 3799999998888664
No 334
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=28.82 E-value=2.4e+02 Score=29.20 Aligned_cols=103 Identities=7% Similarity=0.007 Sum_probs=50.6
Q ss_pred chhHHHHHHHHHcCCcEEE--eecCC----cHHHHHHH-HhcccccCC-----CCCCCCCcHHHHHHHhhhcCCCCeeEE
Q psy17603 471 EPVDKYVTDWLDEGVALVG--GCCRT----YAEDTLHM-KHRLDDWDD-----KHISNGESFTQVARTCYNMNPDQLIAV 538 (591)
Q Consensus 471 e~~a~~~~~~~~~G~~~vg--GCcgt----tp~~i~~l-~~~~~~~d~-----~~l~dG~~l~~~~~~~~~~~~~~~~av 538 (591)
+.+.+.++.+++.|++-|- |+-|= |.++-+.+ +..++..++ ..+ |.+.+++++.++....-.++++
T Consensus 26 ~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv--~~~t~~ai~~a~~a~~~Gadav 103 (296)
T TIGR03249 26 AAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGV--GGNTSDAIEIARLAEKAGADGY 103 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec--CccHHHHHHHHHHHHHhCCCEE
Confidence 4467777777888875433 44431 22233322 222221111 112 1246677766653223345666
Q ss_pred EEcC-----CChhhHHHHHHHhhh-cCCcEEEecCCCCcCCCc
Q psy17603 539 GVNC-----VRPLMVSPLIEQLKT-ENIPLVVYPNSGERYDFH 575 (591)
Q Consensus 539 GiNC-----~~p~~v~~~i~~l~~-~~~pl~vYPNsG~~yd~~ 575 (591)
.+-- .+.+.+.+..+.+.. .+.|+++|=+.|....++
T Consensus 104 ~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~ 146 (296)
T TIGR03249 104 LLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNAD 146 (296)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Confidence 5533 112344444455544 468999996556555554
No 335
>KOG0369|consensus
Probab=28.79 E-value=1.1e+02 Score=35.47 Aligned_cols=71 Identities=23% Similarity=0.374 Sum_probs=51.2
Q ss_pred CCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccCCH---HHHHHHHHHHH-hcCCCceEEE
Q psy17603 169 GASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPAS---KEAQMLCRLLR-EWPHQKAWLS 239 (591)
Q Consensus 169 ga~l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~---~Ea~aa~~a~~-~~~~~pv~vS 239 (591)
|....---.|+|+..+.....--.++|...++.++++|.-++-+--|-.+ .-++..+.++| ++|++|+.|-
T Consensus 694 GGVVEAai~YtGDv~dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~alRdk~PdlPiHvH 768 (1176)
T KOG0369|consen 694 GGVVEAAICYTGDVLDPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIGALRDKFPDLPIHVH 768 (1176)
T ss_pred CCeEEEEEeeccccCCcccccccHHHHHHHHHHHHhccCeEEeehhhhcccCHHHHHHHHHHHHhhCCCCceEEe
Confidence 33333334588877644333445588999999999999999999888765 34667777888 6899998764
No 336
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=28.64 E-value=6e+02 Score=26.04 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHH
Q psy17603 252 ESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIE 287 (591)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~ 287 (591)
+.+.+.++.+... ...+.++|+...+|+++..+.+
T Consensus 188 ~~~~~~i~~ir~~-t~~Pi~vGFGI~~~e~~~~~~~ 222 (263)
T CHL00200 188 KKLKKLIETIKKM-TNKPIILGFGISTSEQIKQIKG 222 (263)
T ss_pred HHHHHHHHHHHHh-cCCCEEEECCcCCHHHHHHHHh
Confidence 3356666666542 3457788888888888766533
No 337
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=28.55 E-value=7.7e+02 Score=26.57 Aligned_cols=42 Identities=10% Similarity=-0.015 Sum_probs=32.9
Q ss_pred CChHHHHHHHHHHHhcCCcEEeecCC---CCHHHHHHHHHHhhhc
Q psy17603 367 DLCEPVDKYVTDWLDEGVALVGGCCR---TYAEDTLHMKHRLDDW 408 (591)
Q Consensus 367 ~~~~~~~~~~~~~~~~Gv~~VGgcCg---tgP~~i~~l~~~l~~~ 408 (591)
.+++.+.+.++.+.+.|++.|.+|=. ..|..+.++++.+++.
T Consensus 142 ~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~ 186 (378)
T PRK11858 142 TDLDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEA 186 (378)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 45678888888888999988766533 3689999998888764
No 338
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.48 E-value=3.8e+02 Score=28.13 Aligned_cols=57 Identities=7% Similarity=0.182 Sum_probs=36.9
Q ss_pred CHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHh
Q psy17603 253 SFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLR 326 (591)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~ 326 (591)
++.++++.+...... .-|-|-|-..+.+..++ ++|+|.+.+..|+ +++++.++..++
T Consensus 191 ~i~~av~~~r~~~~~--~kIeVEvetleea~eA~--------------~aGaDiImLDnms-pe~l~~av~~~~ 247 (294)
T PRK06978 191 GVGAALDAAFALNAG--VPVQIEVETLAQLETAL--------------AHGAQSVLLDNFT-LDMMREAVRVTA 247 (294)
T ss_pred CHHHHHHHHHHhCCC--CcEEEEcCCHHHHHHHH--------------HcCCCEEEECCCC-HHHHHHHHHhhc
Confidence 477888877543221 23667775544433332 4799999999985 677777777654
No 339
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=28.47 E-value=6.2e+02 Score=25.45 Aligned_cols=96 Identities=10% Similarity=0.106 Sum_probs=49.6
Q ss_pred HHHHHHHcCCCEEEe--cccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEec
Q psy17603 198 RIQALVEAGADILAI--ETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVN 275 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~--ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvN 275 (591)
.++.|.++|+|+|.+ |.-+.+ ..+++.+|+. +.++-+.++++| +++++.+...+. .-..+....+|
T Consensus 83 ~i~~~~~aGad~It~H~Ea~~~~---~~~l~~Ik~~-g~~~kaGlalnP------~Tp~~~i~~~l~--~vD~VLiMtV~ 150 (228)
T PRK08091 83 VAKACVAAGADIVTLQVEQTHDL---ALTIEWLAKQ-KTTVLIGLCLCP------ETPISLLEPYLD--QIDLIQILTLD 150 (228)
T ss_pred HHHHHHHhCCCEEEEcccCcccH---HHHHHHHHHC-CCCceEEEEECC------CCCHHHHHHHHh--hcCEEEEEEEC
Confidence 345678999999875 654433 4466677764 564444555555 456655544442 12334444444
Q ss_pred C--CCchhhHHHHHHHH---hc----CCceEEecCCCCc
Q psy17603 276 C--VRPLMVSSLIEQLK---TE----NIPLVVYPNSGEH 305 (591)
Q Consensus 276 C--~~p~~i~~~l~~l~---~~----~~~i~~l~~aG~D 305 (591)
= .+-..+...++.++ +. .......+++|+.
T Consensus 151 PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~ 189 (228)
T PRK08091 151 PRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMT 189 (228)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC
Confidence 2 22223433333333 21 2234567777764
No 340
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=28.28 E-value=8.3e+02 Score=26.87 Aligned_cols=53 Identities=15% Similarity=0.109 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEe------cccCCHHH-HHHHHHHHHh---cCCCceEEEEEe
Q psy17603 186 VSEATMAEWHRPRIQALVEAGADILAI------ETIPASKE-AQMLCRLLRE---WPHQKAWLSFSC 242 (591)
Q Consensus 186 ~~~e~l~~~h~~~i~~l~~aGvD~i~~------ET~~~~~E-a~aa~~a~~~---~~~~pv~vSf~~ 242 (591)
++++++.+..+ .+..+|+|+|-= ..|.-++| +++..+++++ -++.+.+-++.+
T Consensus 157 lsp~~~a~~~~----~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~Ni 219 (412)
T TIGR03326 157 LSTEEHAKVAY----ELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLANI 219 (412)
T ss_pred CChHHHHHHHH----HHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCcceEEEEe
Confidence 57777665544 567799999731 23333333 4555555542 256665555544
No 341
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=28.23 E-value=7.4e+02 Score=26.28 Aligned_cols=90 Identities=12% Similarity=0.149 Sum_probs=52.7
Q ss_pred CCCHHHHH---HHHHHHHHHHHHcCCCEEEeccc----------C--C---------H-HH---HHHHHHHHHhcCCCce
Q psy17603 185 HVSEATMA---EWHRPRIQALVEAGADILAIETI----------P--A---------S-KE---AQMLCRLLREWPHQKA 236 (591)
Q Consensus 185 ~~~~e~l~---~~h~~~i~~l~~aGvD~i~~ET~----------~--~---------~-~E---a~aa~~a~~~~~~~pv 236 (591)
.++.+++. +.|..-++...++|.|.+-+..- | + + .. +..+++++|+..+.|+
T Consensus 131 ~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v 210 (337)
T PRK13523 131 EMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPL 210 (337)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCe
Confidence 46666655 55666677778899999977654 1 1 1 11 3445556664334566
Q ss_pred EEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecC
Q psy17603 237 WLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNC 276 (591)
Q Consensus 237 ~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC 276 (591)
.+-++.. .....|.++++.++.+......+++.|-|-.
T Consensus 211 ~vRis~~--d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~ 248 (337)
T PRK13523 211 FVRISAS--DYHPGGLTVQDYVQYAKWMKEQGVDLIDVSS 248 (337)
T ss_pred EEEeccc--ccCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 6655443 3345677888776655433334566665544
No 342
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=28.20 E-value=2.6e+02 Score=30.82 Aligned_cols=65 Identities=11% Similarity=0.088 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHH----HHHHHHHHHhc-CCCceEEEEEecCCCcccCCCCHHHHHH
Q psy17603 185 HVSEATMAEWHRPRIQALVEAGADILAIETIPASKE----AQMLCRLLREW-PHQKAWLSFSCKDDKHISNGESFTQVAR 259 (591)
Q Consensus 185 ~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~E----a~aa~~a~~~~-~~~pv~vSf~~~~~g~l~~G~~~~~~~~ 259 (591)
..+.+.+++.++- .+.+..+..|+++-|+.+.- |+.+++++++. +.+|++|-+ .|+..++..+
T Consensus 327 ~a~~~~v~~a~~i---i~~d~~vk~iliNIfGGI~~cd~iA~gii~a~~~~~~~~pivvRl---------~Gtn~~~g~~ 394 (422)
T PLN00124 327 NASEQQVVEAFKI---LTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVVRL---------EGTNVDQGKR 394 (422)
T ss_pred CCCHHHHHHHHHH---HhcCCCCcEEEEEecCCccchHHHHHHHHHHHHhcCCCCcEEEEc---------CCCCHHHHHH
Confidence 5688888888872 34577899999998887643 56777888865 467887744 5777777766
Q ss_pred HH
Q psy17603 260 TC 261 (591)
Q Consensus 260 ~~ 261 (591)
.+
T Consensus 395 ~l 396 (422)
T PLN00124 395 IL 396 (422)
T ss_pred HH
Confidence 55
No 343
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=28.18 E-value=5.3e+02 Score=24.60 Aligned_cols=87 Identities=14% Similarity=0.143 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHcCCCEEEec-----ccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCC
Q psy17603 194 WHRPRIQALVEAGADILAIE-----TIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQ 268 (591)
Q Consensus 194 ~h~~~i~~l~~aGvD~i~~E-----T~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~ 268 (591)
...+.++.+.++|+|.|-+- .++++..-..+++.+++.++.|+.+-+.+.+ ..+.++.+.+ .+
T Consensus 12 ~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~---------~~~~~~~~~~---~g 79 (210)
T TIGR01163 12 RLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVEN---------PDRYIEDFAE---AG 79 (210)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCC---------HHHHHHHHHH---cC
Confidence 35567778889999998873 3344433333445555445667655444432 2344554432 34
Q ss_pred eEEEEecCCCchhhHHHHHHHHhc
Q psy17603 269 LIAVGVNCVRPLMVSSLIEQLKTE 292 (591)
Q Consensus 269 ~~aiGvNC~~p~~i~~~l~~l~~~ 292 (591)
+++|-+=.-.++.....++.+++.
T Consensus 80 adgv~vh~~~~~~~~~~~~~~~~~ 103 (210)
T TIGR01163 80 ADIITVHPEASEHIHRLLQLIKDL 103 (210)
T ss_pred CCEEEEccCCchhHHHHHHHHHHc
Confidence 555555443344555666666554
No 344
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=28.05 E-value=2.6e+02 Score=28.91 Aligned_cols=57 Identities=5% Similarity=-0.025 Sum_probs=26.6
Q ss_pred cHHHHHHHhhhcCCCCeeEEEEcC-----CChhhHHHHHHHhhh-cCCcEEEecCCCCcCCCc
Q psy17603 519 SFTQVARTCYNMNPDQLIAVGVNC-----VRPLMVSPLIEQLKT-ENIPLVVYPNSGERYDFH 575 (591)
Q Consensus 519 ~l~~~~~~~~~~~~~~~~avGiNC-----~~p~~v~~~i~~l~~-~~~pl~vYPNsG~~yd~~ 575 (591)
+.+++++.++....-.++++.+-- .+.+.+....+.+.. +++|+++|=+.|..+.++
T Consensus 79 ~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~ 141 (289)
T cd00951 79 GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTAD 141 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHH
Confidence 345555544422222345554432 122334444444443 467777775555444444
No 345
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=27.97 E-value=1e+03 Score=28.39 Aligned_cols=151 Identities=11% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCEE-EecccCCHHHHHHHHHHHHhc---CCCceEEEEEec-------CCCcccCCCCHHHHHHHHHh
Q psy17603 195 HRPRIQALVEAGADIL-AIETIPASKEAQMLCRLLREW---PHQKAWLSFSCK-------DDKHISNGESFTQVARTCYN 263 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i-~~ET~~~~~Ea~aa~~a~~~~---~~~pv~vSf~~~-------~~g~l~~G~~~~~~~~~~~~ 263 (591)
+.++++.++++|+++| +-|---+-.+...+++.+++. .+.+++|.-.+. + -++.......+.++.+
T Consensus 21 ~~~~l~~~l~~g~~~iqlR~K~~~~~~~~~~a~~l~~l~~~~~~~liind~~~la~~~~~d-VHlg~~dl~~~~~r~~-- 97 (755)
T PRK09517 21 VAGIVDSAISGGVSVVQLRDKNAGVEDVRAAAKELKELCDARGVALVVNDRLDVAVELGLH-VHIGQGDTPYTQARRL-- 97 (755)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCC-eecCCCcCCHHHHHHh--
Q ss_pred hCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhccccccccccccCCCC
Q psy17603 264 MNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTEN 343 (591)
Q Consensus 264 ~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~ 343 (591)
...-..||+.|-..+.+..+........ ++|+|.+.+
T Consensus 98 --~~~~~~iG~S~h~~~e~~~~~~~~~~~g-------~~gaDYi~~---------------------------------- 134 (755)
T PRK09517 98 --LPAHLELGLTIETLDQLEAVIAQCAETG-------VALPDVIGI---------------------------------- 134 (755)
T ss_pred --cCCCCEEEEeCCCHHHHHHHHhhhccCC-------CCCCCEEEE----------------------------------
Q ss_pred cceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHh---cCCcEEeecCCCCHHHHHHHHH
Q psy17603 344 IPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLD---EGVALVGGCCRTYAEDTLHMKH 403 (591)
Q Consensus 344 ~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~---~Gv~~VGgcCgtgP~~i~~l~~ 403 (591)
|..|.+.++.-....-.-+..+.+.+..+ ..+-++|| .+++.+.++++
T Consensus 135 ---------Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGG---I~~~~~~~~~~ 185 (755)
T PRK09517 135 ---------GPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGG---VGLRNAAELAA 185 (755)
T ss_pred ---------CCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECC---CCHHHHHHHHH
No 346
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=27.84 E-value=45 Score=35.12 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=20.1
Q ss_pred ccCHHHHHHHHHHHHHHhcceeecc
Q psy17603 35 ATAKDAVVQTHRDFIKAGADIVMTN 59 (591)
Q Consensus 35 ~~~Pe~v~~vH~~yl~AGAdiI~Tn 59 (591)
++...+|.+.+..+-+||||+|.|.
T Consensus 291 ~d~~~~~~Esl~~~kRAGAd~IiTY 315 (324)
T PF00490_consen 291 IDEKRVVLESLLSIKRAGADIIITY 315 (324)
T ss_dssp S-HHHHHHHHHHHHHHHT-SEEEET
T ss_pred cchhhHHHHHHHHHHHcCCCEEEee
Confidence 3456799999999999999999974
No 347
>PTZ00413 lipoate synthase; Provisional
Probab=27.59 E-value=7.5e+02 Score=27.05 Aligned_cols=132 Identities=12% Similarity=0.146 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCC--CCHHHHHHHHHhhCCCCeEEEEecCCCchh--hHHHHHHHHhc
Q psy17603 217 ASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNG--ESFTQVARTCYNMNPDQLIAVGVNCVRPLM--VSSLIEQLKTE 292 (591)
Q Consensus 217 ~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G--~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~--i~~~l~~l~~~ 292 (591)
+.+|...+.+++++ -++. ++-++......+.|| .-+.++++.+ ......+.+-|.-|.. ....++.+...
T Consensus 178 D~eEp~~vA~av~~-~Gl~-~~VVTSv~RDDL~D~ga~~~a~~I~~I----r~~~p~~~IevligDf~g~~e~l~~L~eA 251 (398)
T PTZ00413 178 DPNEPEKVAKAVAE-MGVD-YIVMTMVDRDDLPDGGASHVARCVELI----KESNPELLLEALVGDFHGDLKSVEKLANS 251 (398)
T ss_pred CHHHHHHHHHHHHH-cCCC-EEEEEEEcCCCCChhhHHHHHHHHHHH----HccCCCCeEEEcCCccccCHHHHHHHHhc
Q ss_pred CCceEEecCCCCccc--eeecccccHH-----------HHHHHHHHhhc-cccccccccccCCCCcceEEecCCCcceec
Q psy17603 293 NIPLVVYPNSGEHIL--AIETIPASKE-----------AQMLCRLLREW-PNQKAWLSFSCKTENIPLVVYPNSGERYDA 358 (591)
Q Consensus 293 ~~~i~~l~~aG~D~l--~iET~~d~~E-----------~~~a~~~~~~~-~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~ 358 (591)
|+|.+ =|||-+.+.. -...++.+++. . +...--
T Consensus 252 ----------G~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~-----------------------~gi~tc 298 (398)
T PTZ00413 252 ----------PLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTN-----------------------GAMLTK 298 (398)
T ss_pred ----------CCCEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhc-----------------------CCceEe
Q ss_pred cCCeecCCCChHHHHHHHHHHHhcCCcEE
Q psy17603 359 VNARWIDRDLCEPVDKYVTDWLDEGVALV 387 (591)
Q Consensus 359 ~~g~~~~~~~~~~~~~~~~~~~~~Gv~~V 387 (591)
.+.-.-.|++.+++.+.+..+.+.|++++
T Consensus 299 SGiIVGLGET~eEvie~m~dLrelGVDiv 327 (398)
T PTZ00413 299 SSIMLGLGETEEEVRQTLRDLRTAGVSAV 327 (398)
T ss_pred eeeEecCCCCHHHHHHHHHHHHHcCCcEE
No 348
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.03 E-value=3.5e+02 Score=28.25 Aligned_cols=68 Identities=15% Similarity=0.200 Sum_probs=41.9
Q ss_pred ecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHH
Q psy17603 242 CKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQML 321 (591)
Q Consensus 242 ~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a 321 (591)
++++..-..| ++.++++.+....+. ..-|-|-|-..+.+..++ ++|+|++.+..|+ +++++.+
T Consensus 172 IkdNHi~~~g-~i~~av~~~r~~~~~-~~kIeVEv~tleea~~a~--------------~agaDiImLDnms-pe~l~~a 234 (290)
T PRK06559 172 LKDNHIAAVG-SVQKAIAQARAYAPF-VKMVEVEVESLAAAEEAA--------------AAGADIIMLDNMS-LEQIEQA 234 (290)
T ss_pred EcHHHHHhhc-cHHHHHHHHHHhCCC-CCeEEEECCCHHHHHHHH--------------HcCCCEEEECCCC-HHHHHHH
Confidence 3444333445 688888888653221 234666665544443332 3689999999886 6778877
Q ss_pred HHHHh
Q psy17603 322 CRLLR 326 (591)
Q Consensus 322 ~~~~~ 326 (591)
+..++
T Consensus 235 v~~~~ 239 (290)
T PRK06559 235 ITLIA 239 (290)
T ss_pred HHHhc
Confidence 77655
No 349
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=26.95 E-value=2.3e+02 Score=29.69 Aligned_cols=53 Identities=13% Similarity=-0.030 Sum_probs=38.2
Q ss_pred CcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcC-CcEEeecCCCC-----------HHHHHHHHHHhhhcc
Q psy17603 343 NIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEG-VALVGGCCRTY-----------AEDTLHMKHRLDDWV 409 (591)
Q Consensus 343 ~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~G-v~~VGgcCgtg-----------P~~i~~l~~~l~~~~ 409 (591)
+.|++++.+. .+++++.+.++.+.+.| +++|=+|+++- |+.+.++++.++...
T Consensus 92 ~~pvI~Si~G--------------~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~ 156 (310)
T PRK02506 92 NKPHFLSVVG--------------LSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYF 156 (310)
T ss_pred CCCEEEEEEe--------------CcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhc
Confidence 4688876532 23467778887777778 99999998852 777888888887654
No 350
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=26.87 E-value=9.3e+02 Score=27.02 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHcCCCEEEecccCC---HHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHH
Q psy17603 191 MAEWHRPRIQALVEAGADILAIETIPA---SKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTC 261 (591)
Q Consensus 191 l~~~h~~~i~~l~~aGvD~i~~ET~~~---~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~ 261 (591)
-.++|.+.++.+.+.|+|.|.+--+.. ..++...++++++.+++| |.+-+.++ .|..+...+.++
T Consensus 161 t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~~~~p--i~~H~Hnt----~GlA~An~laAi 228 (468)
T PRK12581 161 TLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAMTNLP--LIVHTHAT----SGISQMTYLAAV 228 (468)
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhccCCe--EEEEeCCC----CccHHHHHHHHH
Confidence 346788888899999999998764433 467788888888766555 45555443 465566665555
No 351
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=26.79 E-value=1.1e+02 Score=30.98 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=16.6
Q ss_pred ChhhHHHHHHHhhhcCCcEEEecCC
Q psy17603 544 RPLMVSPLIEQLKTENIPLVVYPNS 568 (591)
Q Consensus 544 ~p~~v~~~i~~l~~~~~pl~vYPNs 568 (591)
.|+.+.++++.++..++|+.|-=-.
T Consensus 119 dp~~l~~iv~av~~~~~PVsvKiR~ 143 (231)
T TIGR00736 119 NKELLKEFLTKMKELNKPIFVKIRG 143 (231)
T ss_pred CHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 5666777777777667787754433
No 352
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=26.78 E-value=1.5e+02 Score=29.32 Aligned_cols=41 Identities=10% Similarity=0.133 Sum_probs=30.1
Q ss_pred HHHHHHHcCCCEEEecccC--CHHHHHHHHHHHHhcCCCceEE
Q psy17603 198 RIQALVEAGADILAIETIP--ASKEAQMLCRLLREWPHQKAWL 238 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~ET~~--~~~Ea~aa~~a~~~~~~~pv~v 238 (591)
.++.+.++|+|.|++-+=. +.......++++|+..++|+++
T Consensus 16 ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvil 58 (205)
T TIGR01769 16 IAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVIL 58 (205)
T ss_pred HHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEE
Confidence 4456778999999997323 3345566788888867899997
No 353
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=26.68 E-value=8.1e+02 Score=26.17 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=36.1
Q ss_pred hccCHHHHHHHHHHHHHHhcceeecccc--ccChhchhhhcCCChHHHHHHHHHHHHHHHHHHHH
Q psy17603 34 LATAKDAVVQTHRDFIKAGADIVMTNSY--QASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIAL 96 (591)
Q Consensus 34 l~~~Pe~v~~vH~~yl~AGAdiI~TnTy--~as~~~l~~~~g~~~~~~~~l~~~av~lA~~a~~~ 96 (591)
.++.++.+.++=+..-++|++++....| +.|+.+|. |+. ..+.++-++++++
T Consensus 102 siEs~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~---G~g--------~~gL~~L~~~~~~ 155 (335)
T PRK08673 102 SVESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQ---GLG--------EEGLKLLAEAREE 155 (335)
T ss_pred ccCCHHHHHHHHHHHHHhchhhccCcEecCCCCCcccc---ccc--------HHHHHHHHHHHHH
Confidence 4688999999999999999999987777 33444442 442 3445566666554
No 354
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=26.41 E-value=4.8e+02 Score=27.04 Aligned_cols=128 Identities=9% Similarity=-0.007 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHH--hcCCcEEeecCCCCHHHHHHHHHHhhhcccCccccccccccCCCCchhhhhhhCCcchhhcchhhh
Q psy17603 369 CEPVDKYVTDWL--DEGVALVGGCCRTYAEDTLHMKHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFI 446 (591)
Q Consensus 369 ~~~~~~~~~~~~--~~Gv~~VGgcCgtgP~~i~~l~~~l~~~~~~~~~~~pd~~~~~plws~~~~~~~P~~~~~~h~~~i 446 (591)
|..+..+++.|. .+|++++=+++-.|.+.|.+..+....... ..+ +..+.++|+.- +|-
T Consensus 99 ~nTv~~ya~a~~~~~~g~DavTVhp~~G~d~l~~~~~~~~~~~k--~vf------------VlvlTSnp~s~-----~lq 159 (278)
T PRK00125 99 GSTAEAYAKAAFESPLEADAVTVSPYMGFDSLEPYLEYAEEHGK--GVF------------VLCRTSNPGGS-----DLQ 159 (278)
T ss_pred HHHHHHHHHHHhcCccCCcEEEECCcCCHHHHHHHHHHHHhcCC--EEE------------EEEeCCCCCHH-----HHH
Confidence 467788888888 799999999999999999999886644211 111 12345666521 111
Q ss_pred hCCCCcccccccCCCCcccccCCcchhHHHHHHHHH---cCCcEEEeecC-CcHHHHHHHHhccccc---CCCCCCCCCc
Q psy17603 447 KGSQTNDFLRDYNSPNLWIDRDLCEPVDKYVTDWLD---EGVALVGGCCR-TYAEDTLHMKHRLDDW---DDKHISNGES 519 (591)
Q Consensus 447 ~aG~~v~~~~~y~~~~~~l~~~~~e~~a~~~~~~~~---~G~~~vgGCcg-ttp~~i~~l~~~~~~~---d~~~l~dG~~ 519 (591)
..+.. ..+..| +..++.+.++.+ .....+|--.| |-|++++.+|+.+..+ -+|.=..|-.
T Consensus 160 ~~~~~-~~~~l~------------~~V~~~a~~~~~~~~~~~g~~G~VVgaT~p~e~~~iR~~~~~~~iL~PGigaQGg~ 226 (278)
T PRK00125 160 FLRTA-DGRPLY------------QHVADLAAALNNLGNCGYGSIGLVVGATFPPELAAVRKILGGMPLLIPGIGAQGGD 226 (278)
T ss_pred hhhcc-CCCcHH------------HHHHHHHHHHhccccCCCCCCEEEECCCCHHHHHHHHHhCCCCeEEeCCcCCCCcC
Confidence 11100 000111 224555554433 11333442333 4488899998875432 4555567777
Q ss_pred HHHHHHHhh
Q psy17603 520 FTQVARTCY 528 (591)
Q Consensus 520 l~~~~~~~~ 528 (591)
++++++...
T Consensus 227 ~~~~~~~~~ 235 (278)
T PRK00125 227 AEATVRAGG 235 (278)
T ss_pred HHHHHHHhh
Confidence 888887653
No 355
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=26.39 E-value=2.6e+02 Score=29.10 Aligned_cols=103 Identities=17% Similarity=0.275 Sum_probs=58.4
Q ss_pred CCee-cCCCChHHHHHHHHHHHhcCCcEEeecCCCCHHHH-HHHHHHhhhcccCccccccccccCCCCchhhhhhhCCcc
Q psy17603 360 NARW-IDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDT-LHMKHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDA 437 (591)
Q Consensus 360 ~g~~-~~~~~~~~~~~~~~~~~~~Gv~~VGgcCgtgP~~i-~~l~~~l~~~~~~~~~~~pd~~~~~plws~~~~~~~P~~ 437 (591)
.|+. .-..+++.+...++....+|+.+.|.||.- .++ ..+.+.|....| |+.
T Consensus 105 PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E--~eqp~~i~~Ll~~~~P-------DIl----------------- 158 (287)
T PF05582_consen 105 PGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPE--KEQPEKIYRLLEEYRP-------DIL----------------- 158 (287)
T ss_pred CCeEEEecCCHHHHHHHHHHHHHcCCceEEEEech--HHhhHHHHHHHHHcCC-------CEE-----------------
Confidence 3443 355677888888887789999999999963 233 333333333322 111
Q ss_pred hhhcchhhhhCCCCcccccccCCCCcccccCCcchhHHHHHHHHHc-----CCcEEEeecCCcHH
Q psy17603 438 VVQTHRDFIKGSQTNDFLRDYNSPNLWIDRDLCEPVDKYVTDWLDE-----GVALVGGCCRTYAE 497 (591)
Q Consensus 438 ~~~~h~~~i~aG~~v~~~~~y~~~~~~l~~~~~e~~a~~~~~~~~~-----G~~~vgGCcgttp~ 497 (591)
|.-=|..|++...+....+.|..+.. |.+.++..... .-.|.+|-|=.-.|
T Consensus 159 ViTGHD~~~K~~~d~~dl~~YrnSky---------FVeaV~~aR~~ep~~D~LVIfAGACQS~fE 214 (287)
T PF05582_consen 159 VITGHDGYLKNKKDYSDLNNYRNSKY---------FVEAVKEARKYEPNLDDLVIFAGACQSHFE 214 (287)
T ss_pred EEeCchhhhcCCCChhhhhhhhccHH---------HHHHHHHHHhcCCCcccEEEEcchhHHHHH
Confidence 33346556555545545567765532 55554443221 14677788855444
No 356
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=26.36 E-value=1.2e+02 Score=31.82 Aligned_cols=28 Identities=7% Similarity=-0.159 Sum_probs=20.1
Q ss_pred CCChHHHHHHHHHHHhcCCcEEeecCCC
Q psy17603 366 RDLCEPVDKYVTDWLDEGVALVGGCCRT 393 (591)
Q Consensus 366 ~~~~~~~~~~~~~~~~~Gv~~VGgcCgt 393 (591)
|.+|+.+++.++.+.+.|++.|-+|||+
T Consensus 62 g~~~~~~~~aa~~~~~~~~~~IDlN~GC 89 (309)
T PF01207_consen 62 GNDPEDLAEAAEIVAELGFDGIDLNMGC 89 (309)
T ss_dssp -S-HHHHHHHHHHHCCTT-SEEEEEE--
T ss_pred eccHHHHHHHHHhhhccCCcEEeccCCC
Confidence 4567889998887777899999999995
No 357
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=26.22 E-value=5.5e+02 Score=32.26 Aligned_cols=64 Identities=23% Similarity=0.324 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccCCH---HHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHH
Q psy17603 192 AEWHRPRIQALVEAGADILAIETIPAS---KEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTC 261 (591)
Q Consensus 192 ~~~h~~~i~~l~~aGvD~i~~ET~~~~---~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~ 261 (591)
.++|.+.++.+.++|+|.|.+--+..+ .++...++++|+.-+.|+ .+-+.++ .|..+...+.++
T Consensus 688 l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~pi--~~H~Hdt----~Gla~an~laA~ 754 (1143)
T TIGR01235 688 LKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKTDLPI--HFHTHDT----SGIAVASMLAAV 754 (1143)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhcCCeE--EEEECCC----CCcHHHHHHHHH
Confidence 467778888899999999988755543 567778888885435664 4555443 455555555555
No 358
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=26.14 E-value=1.9e+02 Score=29.31 Aligned_cols=47 Identities=15% Similarity=0.056 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHHHH-HcCCCEEEe--cccCCHHHHHHHHHHHHhcCCCceE
Q psy17603 186 VSEATMAEWHRPRIQALV-EAGADILAI--ETIPASKEAQMLCRLLREWPHQKAW 237 (591)
Q Consensus 186 ~~~e~l~~~h~~~i~~l~-~aGvD~i~~--ET~~~~~Ea~aa~~a~~~~~~~pv~ 237 (591)
-+.+++.+...+.++.|. +.|+|++++ +|... .+++.+++..+.|++
T Consensus 40 ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCNTA~a-----~~~~~l~~~~~iPii 89 (251)
T TIGR00067 40 KSPEFILEYVLELLTFLKERHNIKLLVVACNTASA-----LALEDLQRNFDFPVV 89 (251)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHH-----HHHHHHHHHCCCCEE
Confidence 589999999999999999 999998764 55421 234555543356754
No 359
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=25.96 E-value=7.7e+02 Score=25.70 Aligned_cols=45 Identities=18% Similarity=0.352 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHHhcceeec-cccccChhchhhhcCCChHHHHHHHHHHHH
Q psy17603 37 AKDAVVQTHRDFIKAGADIVMT-NSYQASIGGFMEFLDLDYDSSYQLIKSSVD 88 (591)
Q Consensus 37 ~Pe~v~~vH~~yl~AGAdiI~T-nTy~as~~~l~~~~g~~~~~~~~l~~~av~ 88 (591)
+.+.+++.-..++++|++-|.. -|.+= . .-++.++-.++++.+++
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~GstGE---~----~~Lt~eEr~~v~~~~~~ 72 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMGTFGE---C----ATLTWEEKQAFVATVVE 72 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccc---c----hhCCHHHHHHHHHHHHH
Confidence 5678888888889999986553 44431 1 23566777776666554
No 360
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=25.80 E-value=8.6e+02 Score=26.22 Aligned_cols=177 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred cceeEeeccCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccCC------------------H
Q psy17603 157 RDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPA------------------S 218 (591)
Q Consensus 157 ~~~~VagsiGP~ga~l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~------------------~ 218 (591)
++++|.+.+-.+-+. .|| ..-+.+..+|++|+ +.|+=++++|+... +
T Consensus 18 ~NRivmaPm~~~~a~-~dG----------~pt~~~~~yy~~RA----~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i 82 (363)
T COG1902 18 KNRIVMAPMTRNRAT-PDG----------LPTDLLAEYYAERA----KGGAGLIITEATAVDPGGRGYPGQPGLWSDAQI 82 (363)
T ss_pred ccceeecCccccccc-CCC----------CCCHHHHHHHHHHh----cCCCCEEEEeeEeeCcccccCCCCCccCChhHh
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEecC---------------------------CCcccCCCCHHHHHHHHHh----hCCC
Q psy17603 219 KEAQMLCRLLREWPHQKAWLSFSCKD---------------------------DKHISNGESFTQVARTCYN----MNPD 267 (591)
Q Consensus 219 ~Ea~aa~~a~~~~~~~pv~vSf~~~~---------------------------~g~l~~G~~~~~~~~~~~~----~~~~ 267 (591)
...+.+.+++++ -+.++++.+.=.. ..+-++-+.+.++++.+.. ....
T Consensus 83 ~~~~~vt~avH~-~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~A 161 (363)
T COG1902 83 PGLKRLTEAVHA-HGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAKEA 161 (363)
T ss_pred HHHHHHHHHHHh-cCCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHc
Q ss_pred CeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHH-----------HHHHHHHHhhccccccccc
Q psy17603 268 QLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKE-----------AQMLCRLLREWPNQKAWLS 336 (591)
Q Consensus 268 ~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E-----------~~~a~~~~~~~~~~~~~~s 336 (591)
+.++|=|-+.+-..+.+.+..+...+ .+| ++..++++|+.-
T Consensus 162 GFDgVEIH~AhGYLi~qFlsp~tN~R---------------------tD~YGGSlENR~Rf~~EVv~aVr~~v------- 213 (363)
T COG1902 162 GFDGVEIHGAHGYLLSQFLSPLTNKR---------------------TDEYGGSLENRARFLLEVVDAVREAV------- 213 (363)
T ss_pred CCCEEEEeeccchHHHHhcCCccCCC---------------------CCccCCcHHHHHHHHHHHHHHHHHHh-------
Q ss_pred cccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcC-CcEE
Q psy17603 337 FSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEG-VALV 387 (591)
Q Consensus 337 ~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~G-v~~V 387 (591)
..+.||.+-.+..+.++. .+.+.++..+.++.+.+.| +++|
T Consensus 214 ----g~~~~vg~Rls~~d~~~~------~g~~~~e~~~la~~L~~~G~~d~i 255 (363)
T COG1902 214 ----GADFPVGVRLSPDDFFDG------GGLTIEEAVELAKALEEAGLVDYI 255 (363)
T ss_pred ----CCCceEEEEECccccCCC------CCCCHHHHHHHHHHHHhcCCccEE
No 361
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=25.77 E-value=4.6e+02 Score=31.21 Aligned_cols=89 Identities=13% Similarity=0.132 Sum_probs=47.0
Q ss_pred CCCCHHHHH---HHHHHHHHHHHHcCCCEEEecccC---------------------CH----HHHHHHHHHHHhcC--C
Q psy17603 184 EHVSEATMA---EWHRPRIQALVEAGADILAIETIP---------------------AS----KEAQMLCRLLREWP--H 233 (591)
Q Consensus 184 ~~~~~e~l~---~~h~~~i~~l~~aGvD~i~~ET~~---------------------~~----~Ea~aa~~a~~~~~--~ 233 (591)
..++.+++. +.|.+-++...++|.|.|-+.--. ++ .=...+++++|+.. +
T Consensus 539 ~~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~ 618 (765)
T PRK08255 539 REMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAE 618 (765)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCC
Confidence 356766655 556666666778999999775331 11 11345556666532 3
Q ss_pred CceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEe
Q psy17603 234 QKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGV 274 (591)
Q Consensus 234 ~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGv 274 (591)
.|+.+-++. ......|.++++.++.+......+++.|-|
T Consensus 619 ~~v~~ri~~--~~~~~~g~~~~~~~~~~~~l~~~g~d~i~v 657 (765)
T PRK08255 619 KPMSVRISA--HDWVEGGNTPDDAVEIARAFKAAGADLIDV 657 (765)
T ss_pred CeeEEEEcc--ccccCCCCCHHHHHHHHHHHHhcCCcEEEe
Confidence 455554443 233345666666655443222334444433
No 362
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=25.72 E-value=2.5e+02 Score=29.68 Aligned_cols=103 Identities=16% Similarity=0.075 Sum_probs=59.3
Q ss_pred ccCCcchhHHHHHHHHHcCCcEEEeecCCcHHHHHHHHhccccc--------------------------C--------C
Q psy17603 466 DRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDW--------------------------D--------D 511 (591)
Q Consensus 466 ~~~~~e~~a~~~~~~~~~G~~~vgGCcgttp~~i~~l~~~~~~~--------------------------d--------~ 511 (591)
++++.+..++.+....++|+++|+=|-= -...+.++|++++.- + .
T Consensus 137 ND~Tl~~L~~~Avs~A~AGADiVAPSdM-MDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDRk 215 (320)
T cd04823 137 NDETVEVLCKQALVQAEAGADIVAPSDM-MDGRIGAIREALDAEGFTNVSILSYAAKYASAFYGPFRDALGSAPRKGDKK 215 (320)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEcccc-hhhHHHHHHHHHHHCCCCCCceeechHHhhhhccchhHHHhcCCCCCCCcc
Confidence 3445556788888889999999984431 244677777776432 0 0
Q ss_pred CCCCCCCcHHHHHHHhhhcCCCCeeEEEEcCCChhhHHHHHHHhhh-cCCcEEEecCCCCc
Q psy17603 512 KHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQLKT-ENIPLVVYPNSGER 571 (591)
Q Consensus 512 ~~l~dG~~l~~~~~~~~~~~~~~~~avGiNC~~p~~v~~~i~~l~~-~~~pl~vYPNsG~~ 571 (591)
.+-.|--.-.++++.+.-...+..+.+-|-=. -.-.++|+.++. .+.|+++|-=|||-
T Consensus 216 sYQmdp~n~~eAlre~~~Di~EGAD~lMVKPa--l~YLDIi~~~k~~~~lPvaaYqVSGEY 274 (320)
T cd04823 216 TYQMDPANSREALREVALDIAEGADMVMVKPG--MPYLDIIRRVKDEFGVPTFAYQVSGEY 274 (320)
T ss_pred ccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCC--chHHHHHHHHHHhcCCCEEEEEccHHH
Confidence 12222223345555543112234465555431 123455556655 58999999999973
No 363
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=25.70 E-value=5.1e+02 Score=26.89 Aligned_cols=59 Identities=10% Similarity=0.111 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhh
Q psy17603 252 ESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLRE 327 (591)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~ 327 (591)
+++.++++.+....+. .-|-|-|...+..... +++|+|.+.+..| +.++++.+++.+++
T Consensus 173 ~~i~~av~~~r~~~~~--~kIeVEv~tleea~ea--------------~~~GaDiI~lDn~-~~e~l~~~v~~l~~ 231 (277)
T TIGR01334 173 FDWGGAIGRLKQTAPE--RKITVEADTIEQALTV--------------LQASPDILQLDKF-TPQQLHHLHERLKF 231 (277)
T ss_pred ccHHHHHHHHHHhCCC--CCEEEECCCHHHHHHH--------------HHcCcCEEEECCC-CHHHHHHHHHHHhc
Confidence 4788888887653222 2255655433333222 2468999999974 57788888877764
No 364
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=25.69 E-value=2.5e+02 Score=29.64 Aligned_cols=32 Identities=6% Similarity=0.198 Sum_probs=21.7
Q ss_pred HHHHHHH------cCCCEEEeccc--------CCHHHHHHHHHHHH
Q psy17603 198 RIQALVE------AGADILAIETI--------PASKEAQMLCRLLR 229 (591)
Q Consensus 198 ~i~~l~~------aGvD~i~~ET~--------~~~~Ea~aa~~a~~ 229 (591)
+++..++ +|+|+|.+..| .+..+.+.+++.++
T Consensus 215 ea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~ 260 (308)
T PLN02716 215 EVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELIN 260 (308)
T ss_pred HHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhhC
Confidence 4445567 88899988888 24666666666554
No 365
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=25.69 E-value=6.6e+02 Score=24.79 Aligned_cols=105 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecC
Q psy17603 197 PRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNC 276 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC 276 (591)
++++..+++|+|+++-=.+ -..+++++++ .+.|++ +.-.++.|+.... ..+.+.|=+-=
T Consensus 71 ~~a~~a~~aGA~FivsP~~-----~~~v~~~~~~-~~i~~i-----------PG~~TptEi~~A~----~~Ga~~vKlFP 129 (204)
T TIGR01182 71 EQLRQAVDAGAQFIVSPGL-----TPELAKHAQD-HGIPII-----------PGVATPSEIMLAL----ELGITALKLFP 129 (204)
T ss_pred HHHHHHHHcCCCEEECCCC-----CHHHHHHHHH-cCCcEE-----------CCCCCHHHHHHHH----HCCCCEEEECC
Q ss_pred CCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhccccccccccccCCCCcceEEecCCCcce
Q psy17603 277 VRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERY 356 (591)
Q Consensus 277 ~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~ 356 (591)
.+.-.=...++.|+.-.-++..++-+|++
T Consensus 130 A~~~GG~~yikal~~plp~i~~~ptGGV~--------------------------------------------------- 158 (204)
T TIGR01182 130 AEVSGGVKMLKALAGPFPQVRFCPTGGIN--------------------------------------------------- 158 (204)
T ss_pred chhcCCHHHHHHHhccCCCCcEEecCCCC---------------------------------------------------
Q ss_pred eccCCeecCCCChHHHHHHHHHHHhcCCcEEee
Q psy17603 357 DAVNARWIDRDLCEPVDKYVTDWLDEGVALVGG 389 (591)
Q Consensus 357 d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGg 389 (591)
.+-+.+|++.|+..+|+
T Consensus 159 ----------------~~N~~~~l~aGa~~vg~ 175 (204)
T TIGR01182 159 ----------------LANVRDYLAAPNVACGG 175 (204)
T ss_pred ----------------HHHHHHHHhCCCEEEEE
No 366
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.64 E-value=3.6e+02 Score=28.03 Aligned_cols=58 Identities=12% Similarity=0.155 Sum_probs=37.8
Q ss_pred CHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHh
Q psy17603 253 SFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLR 326 (591)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~ 326 (591)
++.++++.+....+.. .-|-|-|...+.+..++ ++|+|++.+..|+ +++++.++..++
T Consensus 178 ~i~~av~~~r~~~~~~-~kIeVEv~slee~~ea~--------------~~gaDiImLDn~s-~e~l~~av~~~~ 235 (281)
T PRK06543 178 DLTEALRHVRAQLGHT-THVEVEVDRLDQIEPVL--------------AAGVDTIMLDNFS-LDDLREGVELVD 235 (281)
T ss_pred HHHHHHHHHHHhCCCC-CcEEEEeCCHHHHHHHH--------------hcCCCEEEECCCC-HHHHHHHHHHhC
Confidence 6888888876533211 23556665544443332 3699999999886 677888877665
No 367
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=25.53 E-value=2e+02 Score=32.02 Aligned_cols=154 Identities=8% Similarity=-0.002 Sum_probs=82.0
Q ss_pred HhcCCcEEeecCCC-CHHHHHHHHHHhhhcccCccccccccccCCCCchhhhhhhCCcchhhcch--h---hhhCCCCcc
Q psy17603 380 LDEGVALVGGCCRT-YAEDTLHMKHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHR--D---FIKGSQTND 453 (591)
Q Consensus 380 ~~~Gv~~VGgcCgt-gP~~i~~l~~~l~~~~~~~~~~~pd~~~~~plws~~~~~~~P~~~~~~h~--~---~i~aG~~v~ 453 (591)
..+|+++|=+=++. +++.+.++.+.....- . .| ++.+|- + -+++|++++
T Consensus 129 ~~~GADavLLI~~~L~~~~l~~l~~~a~~lG--l----------~~-------------lvEvh~~~El~~al~~~a~ii 183 (454)
T PRK09427 129 RYYGADAILLMLSVLDDEQYRQLAAVAHSLN--M----------GV-------------LTEVSNEEELERAIALGAKVI 183 (454)
T ss_pred HHcCCCchhHHHHhCCHHHHHHHHHHHHHcC--C----------cE-------------EEEECCHHHHHHHHhCCCCEE
Confidence 35788777666655 3456777766554431 1 01 122221 1 135777777
Q ss_pred cccccCCCCcccccCCcchhHHHHHHHHHcCCcEEEeecCCcHHHHHHHHhccccc----------C-----------CC
Q psy17603 454 FLRDYNSPNLWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDW----------D-----------DK 512 (591)
Q Consensus 454 ~~~~y~~~~~~l~~~~~e~~a~~~~~~~~~G~~~vgGCcgttp~~i~~l~~~~~~~----------d-----------~~ 512 (591)
+-|.-...-.-. .++ ........+..++.+|..+-=.||++++.++..++.+ | .-
T Consensus 184 GiNnRdL~t~~v---d~~-~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~~~davLiG~~lm~~~d~~~~~~~L~~~~v 259 (454)
T PRK09427 184 GINNRNLRDLSI---DLN-RTRELAPLIPADVIVISESGIYTHAQVRELSPFANGFLIGSSLMAEDDLELAVRKLILGEN 259 (454)
T ss_pred EEeCCCCccceE---CHH-HHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHhcCCEEEECHHHcCCCCHHHHHHHHhcccc
Confidence 655543221000 011 1222333344567777766666788888877665544 1 13
Q ss_pred CCCCCCcHHHHHHHhhhcCCCCeeEEEEcC--CChhh-----HHHHHHHhhhcCCcEEEecCC
Q psy17603 513 HISNGESFTQVARTCYNMNPDQLIAVGVNC--VRPLM-----VSPLIEQLKTENIPLVVYPNS 568 (591)
Q Consensus 513 ~l~dG~~l~~~~~~~~~~~~~~~~avGiNC--~~p~~-----v~~~i~~l~~~~~pl~vYPNs 568 (591)
+++-=+..+++...+ ...++++|+.+ .+|.+ +..+.+.+. -.+++|+-|.
T Consensus 260 KICGit~~eda~~a~----~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~--v~~VgVfv~~ 316 (454)
T PRK09427 260 KVCGLTRPQDAKAAY----DAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP--LRYVGVFRNA 316 (454)
T ss_pred ccCCCCCHHHHHHHH----hCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC--CCEEEEEeCC
Confidence 455556676665554 33689999997 34444 444444443 3457777665
No 368
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=25.46 E-value=4.4e+02 Score=26.72 Aligned_cols=82 Identities=11% Similarity=0.028 Sum_probs=48.5
Q ss_pred HHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCc------ccCCCCHHHHHHHHHhh-CCCCeE
Q psy17603 198 RIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKH------ISNGESFTQVARTCYNM-NPDQLI 270 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~------l~~G~~~~~~~~~~~~~-~~~~~~ 270 (591)
.++...+.|+|++.+-.++..+-.+++.++++++.. .++..+..+... +.-..++.+.+..+... ...+.+
T Consensus 81 ~~~~~~~~g~d~vtvH~~~G~~~~~~~~e~~~~~~~--~vl~vT~lts~~~~~~~~~~~~~~~~~~v~~~a~~~~~~G~d 158 (240)
T COG0284 81 AAKAAADLGADAVTVHAFGGFDMLRAAKEALEAGGP--FVLAVTSLTSMGELQLAELGINSSLEEQVLRLAKLAGEAGLD 158 (240)
T ss_pred HHHHhhhcCCcEEEEeCcCCHHHHHHHHHHHhhcCc--eEEEEEeCCCchhhhhhhccccchHHHHHHHHHHHhccCCce
Confidence 344567889999999999999888889898887533 344444432211 11224566666655332 234555
Q ss_pred EEEecCCCchh
Q psy17603 271 AVGVNCVRPLM 281 (591)
Q Consensus 271 aiGvNC~~p~~ 281 (591)
++...+..+..
T Consensus 159 gvv~~~~e~~~ 169 (240)
T COG0284 159 GVVCSAEEVAA 169 (240)
T ss_pred EEEcCHHHHHH
Confidence 55544333333
No 369
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=25.21 E-value=3.3e+02 Score=28.40 Aligned_cols=100 Identities=11% Similarity=0.079 Sum_probs=55.3
Q ss_pred CCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhhccccccccccccCCCCcc
Q psy17603 266 PDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIP 345 (591)
Q Consensus 266 ~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~p 345 (591)
..+.++|=|||.+...+.+.+......+ -. +-|-++ | .....+...++++|+.. ..+.|
T Consensus 152 ~aGfDgveih~~~gyL~~qFlsp~~n~R--~d---~yGgs~---e--nr~r~~~eii~avr~~~-----------g~d~~ 210 (327)
T cd02803 152 EAGFDGVEIHGAHGYLLSQFLSPYTNKR--TD---EYGGSL---E--NRARFLLEIVAAVREAV-----------GPDFP 210 (327)
T ss_pred HcCCCEEEEcchhhhHHHHhcCccccCC--Cc---ccCCCH---H--HHHHHHHHHHHHHHHHc-----------CCCce
Confidence 3688999999987776666655432211 00 112121 1 12233445555666531 12467
Q ss_pred eEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCCC
Q psy17603 346 LVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRT 393 (591)
Q Consensus 346 l~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCgt 393 (591)
|.+-.+..... . .+.+.++..++++.+.+.|++.|-+..++
T Consensus 211 i~vris~~~~~---~----~g~~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 211 VGVRLSADDFV---P----GGLTLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred EEEEechhccC---C----CCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 77654432211 1 12345777888888889999999776654
No 370
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=25.20 E-value=52 Score=34.65 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.5
Q ss_pred ccCHHHHHHHHHHHHHHhcceeecc
Q psy17603 35 ATAKDAVVQTHRDFIKAGADIVMTN 59 (591)
Q Consensus 35 ~~~Pe~v~~vH~~yl~AGAdiI~Tn 59 (591)
++..+++.+.+..|-+||||+|.|.
T Consensus 289 ~D~~~~~~Esl~~~kRAGAd~IiTY 313 (323)
T PRK09283 289 IDEERVVLESLLSIKRAGADGILTY 313 (323)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEec
Confidence 3456789999999999999999973
No 371
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=25.04 E-value=95 Score=28.33 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHHHhcCCcEEeecCC--CCHHHHHHHHHHhhhc
Q psy17603 368 LCEPVDKYVTDWLDEGVALVGGCCR--TYAEDTLHMKHRLDDW 408 (591)
Q Consensus 368 ~~~~~~~~~~~~~~~Gv~~VGgcCg--tgP~~i~~l~~~l~~~ 408 (591)
+++++.+ .+.+.++++||+|.- +..+.+.++++.|+..
T Consensus 41 s~e~~v~---aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~ 80 (132)
T TIGR00640 41 TPEEIAR---QAVEADVHVVGVSSLAGGHLTLVPALRKELDKL 80 (132)
T ss_pred CHHHHHH---HHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhc
Confidence 3455554 446889999999883 3556677788877664
No 372
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=24.99 E-value=1.9e+02 Score=34.49 Aligned_cols=62 Identities=27% Similarity=0.280 Sum_probs=44.9
Q ss_pred CCCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHH---HHHHHHHHHhcCCCceEE
Q psy17603 177 EYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKE---AQMLCRLLREWPHQKAWL 238 (591)
Q Consensus 177 eY~g~y~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~E---a~aa~~a~~~~~~~pv~v 238 (591)
.|+|+..+.-...--.++|...++.+.++|+-+|.+--|..+.- |+..+.++|+..++|+-+
T Consensus 678 CYTGDildp~r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~dlPIHl 742 (1149)
T COG1038 678 CYTGDILDPGRKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETVDLPIHL 742 (1149)
T ss_pred EeccccCCCCcccccHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhcCCceEE
Confidence 47887764333333458899999999999999999999988754 444555666555788764
No 373
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=24.79 E-value=7.3e+02 Score=25.01 Aligned_cols=53 Identities=28% Similarity=0.276 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEe-cccCC--HHHHHHHHHHHHhcCCCceEEEEEecCC
Q psy17603 187 SEATMAEWHRPRIQALVEAGADILAI-ETIPA--SKEAQMLCRLLREWPHQKAWLSFSCKDD 245 (591)
Q Consensus 187 ~~e~l~~~h~~~i~~l~~aGvD~i~~-ET~~~--~~Ea~aa~~a~~~~~~~pv~vSf~~~~~ 245 (591)
+++.+.+ .++.+.+.|+|.|.+ -|++. ..++...+..+++.. |+-+.|-+.++
T Consensus 137 ~~~~~~~----~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~--~~~l~~H~Hn~ 192 (259)
T cd07939 137 DPDFLIE----FAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAAT--DLPLEFHAHND 192 (259)
T ss_pred CHHHHHH----HHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCC
Confidence 4555444 445677889998755 57665 456777777777532 23356666553
No 374
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=24.64 E-value=8.1e+02 Score=25.52 Aligned_cols=38 Identities=8% Similarity=0.052 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHhcCCcEEeecCC-CCHHHHHHHHHHhh
Q psy17603 369 CEPVDKYVTDWLDEGVALVGGCCR-TYAEDTLHMKHRLD 406 (591)
Q Consensus 369 ~~~~~~~~~~~~~~Gv~~VGgcCg-tgP~~i~~l~~~l~ 406 (591)
.++..+.++.+.+.|++.|=.-++ ..+++|.++.+.+.
T Consensus 165 ~deAI~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~ 203 (290)
T TIGR02321 165 QQEAVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWP 203 (290)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcC
Confidence 345555567788999999988764 88999999988763
No 375
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=24.62 E-value=8.9e+02 Score=25.95 Aligned_cols=122 Identities=11% Similarity=0.013 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEec-----ccCCHHHHHHHHHHHHhc----CCCceEEEEEecCCCcccCCCCHHHHH
Q psy17603 188 EATMAEWHRPRIQALVEAGADILAIE-----TIPASKEAQMLCRLLREW----PHQKAWLSFSCKDDKHISNGESFTQVA 258 (591)
Q Consensus 188 ~e~l~~~h~~~i~~l~~aGvD~i~~E-----T~~~~~Ea~aa~~a~~~~----~~~pv~vSf~~~~~g~l~~G~~~~~~~ 258 (591)
.+++...|++.++.|.++|+++|=+- +..+..+...+.++.+.. ++.++.++..+.+ +.+++
T Consensus 177 ~~dla~~y~~el~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~tyfg~---------~~~~~ 247 (360)
T cd03312 177 LDKLLPVYKELLKKLAAAGAEWVQIDEPALVLDLPEEWLAAFKRAYEELAKAAPGLKLLLATYFGS---------LGENL 247 (360)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeCChhhcCCCHHHHHHHHHHHHHHhcCCCCCcEEEEecccc---------hHHHH
Confidence 47778899999999999999987332 233333445555555532 3456777654432 23455
Q ss_pred HHHHhhCCCCeEEEEecCCCc-hhhHHHHHH-HHhcCCceEEecCCCCccceeecccccHHHHHHHHHHhh
Q psy17603 259 RTCYNMNPDQLIAVGVNCVRP-LMVSSLIEQ-LKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLRE 327 (591)
Q Consensus 259 ~~~~~~~~~~~~aiGvNC~~p-~~i~~~l~~-l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~~ 327 (591)
..+. ...++++++-+... ..+..+ +. +.....-...++++- -.++ .|.++++..++.+.+
T Consensus 248 ~~l~---~l~Vd~l~le~~~~~~~l~~l-~~~~~~~k~l~lGvId~r--n~~~---ed~e~i~~~i~~a~~ 309 (360)
T cd03312 248 DLLA---SLPVDGLHLDLVRGPENLEAV-LKAGFADKVLSAGVVDGR--NIWR---ADLAASLALLETLAA 309 (360)
T ss_pred HHHH---cCCCCEEEEEecCCcccHHHH-HhcCCCCCEEEEEEEcCC--CCCc---CCHHHHHHHHHHHHH
Confidence 5553 35689999998664 333333 22 211111122344432 2333 356666666666654
No 376
>PRK02227 hypothetical protein; Provisional
Probab=24.62 E-value=7.5e+02 Score=25.10 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=13.4
Q ss_pred HHHHHHHcCCCEEEecccCC
Q psy17603 198 RIQALVEAGADILAIETIPA 217 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~ET~~~ 217 (591)
++......|||++-+--++.
T Consensus 72 aa~~~a~~GvDyVKvGl~~~ 91 (238)
T PRK02227 72 AALGAAATGADYVKVGLYGG 91 (238)
T ss_pred HHHHHHhhCCCEEEEcCCCC
Confidence 34455678999997665543
No 377
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=24.54 E-value=1.1e+02 Score=34.47 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=26.7
Q ss_pred cCCCEEEecc-cCCHHHHHHHHHHHH-hcCCC
Q psy17603 205 AGADILAIET-IPASKEAQMLCRLLR-EWPHQ 234 (591)
Q Consensus 205 aGvD~i~~ET-~~~~~Ea~aa~~a~~-~~~~~ 234 (591)
..+|+|+.|| -|++.+|+...+.++ .+|++
T Consensus 378 PyaDliW~ET~~Pdl~~A~~Fa~~v~~~~P~k 409 (527)
T TIGR01346 378 PYADLIWMETSTPDLELAKKFAEGVKSKFPDQ 409 (527)
T ss_pred ccccEEEecCCCCCHHHHHHHHHHHHHHCCCC
Confidence 4799999999 899999999999999 46776
No 378
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=24.42 E-value=7.4e+02 Score=24.97 Aligned_cols=100 Identities=11% Similarity=0.127 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCCEEEeccc--CCHHHHHHHHHHHHhcCCCceEEEEEecCCCcc------cCCCCHHHHHHHHHhhCCCC
Q psy17603 197 PRIQALVEAGADILAIETI--PASKEAQMLCRLLREWPHQKAWLSFSCKDDKHI------SNGESFTQVARTCYNMNPDQ 268 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET~--~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l------~~G~~~~~~~~~~~~~~~~~ 268 (591)
+.++.+++.|+|-+++.|. .+..-.+.+ .++++. +++|..++++.-. .++.++.+.++.+.......
T Consensus 86 e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~----~~~~~~-ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ 160 (241)
T PRK14114 86 DYAEKLRKLGYRRQIVSSKVLEDPSFLKFL----KEIDVE-PVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEE 160 (241)
T ss_pred HHHHHHHHCCCCEEEECchhhCCHHHHHHH----HHhCCC-EEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCE
Confidence 3455667799999888774 343333322 335444 7889988653212 24556788888775432233
Q ss_pred eEEEEecC----CCchhhHHHHHHHHhcCCceEEecCCCC
Q psy17603 269 LIAVGVNC----VRPLMVSSLIEQLKTENIPLVVYPNSGE 304 (591)
Q Consensus 269 ~~aiGvNC----~~p~~i~~~l~~l~~~~~~i~~l~~aG~ 304 (591)
+..--++. .+|.. ++++.+.+.. .+...+.+|+
T Consensus 161 ii~tdI~rdGt~~G~d~--el~~~l~~~~-~~pviasGGv 197 (241)
T PRK14114 161 IVHTEIEKDGTLQEHDF--SLTRKIAIEA-EVKVFAAGGI 197 (241)
T ss_pred EEEEeechhhcCCCcCH--HHHHHHHHHC-CCCEEEECCC
Confidence 33333333 33432 2344444321 3455667776
No 379
>COG2224 AceA Isocitrate lyase [Energy production and conversion]
Probab=24.33 E-value=1.1e+02 Score=33.23 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=25.1
Q ss_pred CCCEEEecc-cCCHHHHHHHHHHHH-hcCCC
Q psy17603 206 GADILAIET-IPASKEAQMLCRLLR-EWPHQ 234 (591)
Q Consensus 206 GvD~i~~ET-~~~~~Ea~aa~~a~~-~~~~~ 234 (591)
-+|++++|| -|++.++|...++++ .+|++
T Consensus 283 yaDl~W~ET~~Pdle~ak~Fae~Ih~~~P~~ 313 (433)
T COG2224 283 YADLLWCETSTPDLEEARQFAEAIHAKYPGK 313 (433)
T ss_pred ccceEEEecCCCCHHHHHHHHHHHHHhCCcc
Confidence 359999998 799999999999999 46765
No 380
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=24.31 E-value=1.2e+02 Score=30.57 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=26.7
Q ss_pred CCCCCcCCCCCHHHHHHHH-------------HHHHHHHHHcCCCEEEeccc
Q psy17603 177 EYRGDYVEHVSEATMAEWH-------------RPRIQALVEAGADILAIETI 215 (591)
Q Consensus 177 eY~g~y~~~~~~e~l~~~h-------------~~~i~~l~~aGvD~i~~ET~ 215 (591)
||.|-|.+....|.++..- .+|++.+.++|+|.|++-|+
T Consensus 171 Eagsga~~Pv~~e~v~~v~~~~~LivGGGIrs~E~A~~~a~agAD~IVtG~i 222 (240)
T COG1646 171 EAGSGAGDPVPVEMVSRVLSDTPLIVGGGIRSPEQAREMAEAGADTIVTGTI 222 (240)
T ss_pred EecCCCCCCcCHHHHHHhhccceEEEcCCcCCHHHHHHHHHcCCCEEEECce
Confidence 5566666566666665543 45777888888888887775
No 381
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=24.26 E-value=7.9e+02 Score=25.21 Aligned_cols=41 Identities=12% Similarity=-0.005 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHHhcCCcEEeecCCC---CHHHHHHHHHHhhhc
Q psy17603 368 LCEPVDKYVTDWLDEGVALVGGCCRT---YAEDTLHMKHRLDDW 408 (591)
Q Consensus 368 ~~~~~~~~~~~~~~~Gv~~VGgcCgt---gP~~i~~l~~~l~~~ 408 (591)
+++.+.+.++.+.+.|++.|..|=.+ .|..+..+++.++..
T Consensus 147 ~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~ 190 (274)
T cd07938 147 PPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLER 190 (274)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHH
Confidence 46788888888899999988877433 689999998888765
No 382
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=24.17 E-value=1.5e+02 Score=31.20 Aligned_cols=28 Identities=4% Similarity=-0.127 Sum_probs=23.8
Q ss_pred CCChHHHHHHHHHHHhcCCcEEeecCCC
Q psy17603 366 RDLCEPVDKYVTDWLDEGVALVGGCCRT 393 (591)
Q Consensus 366 ~~~~~~~~~~~~~~~~~Gv~~VGgcCgt 393 (591)
+.+|+.+++.++.+.+.|++.|-+|||.
T Consensus 71 g~~~~~~~~aa~~~~~~G~d~IelN~gc 98 (319)
T TIGR00737 71 GSDPDTMAEAAKINEELGADIIDINMGC 98 (319)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 4567889999988888999999999885
No 383
>PLN02235 ATP citrate (pro-S)-lyase
Probab=23.99 E-value=5e+02 Score=28.71 Aligned_cols=69 Identities=14% Similarity=0.124 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHHHHH-HHcCCCEEEecccCCHHH----H---HHHHHHHHhcC------CCceEEEEEecCCCcccC
Q psy17603 185 HVSEATMAEWHRPRIQAL-VEAGADILAIETIPASKE----A---QMLCRLLREWP------HQKAWLSFSCKDDKHISN 250 (591)
Q Consensus 185 ~~~~e~l~~~h~~~i~~l-~~aGvD~i~~ET~~~~~E----a---~aa~~a~~~~~------~~pv~vSf~~~~~g~l~~ 250 (591)
..+.+.+++.++-.+..+ .+..++.++++-|+.+.- | +.++++++++. .+|+||-+ .
T Consensus 307 ~a~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI~rcd~VA~tf~GIi~A~~e~~~kl~~~~vpivVRl---------~ 377 (423)
T PLN02235 307 APNEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTDVAATFNGIIRALREKESKLKAARMHIFVRR---------G 377 (423)
T ss_pred CCCHHHHHHHHHHHHhhhhcCCCCcEEEEEEecccccchhhhhhhhHHHHHHHHhhhccccCCccEEEEC---------C
Confidence 578999998887332111 256789898888876532 4 68889999863 46887643 6
Q ss_pred CCCHHHHHHHHH
Q psy17603 251 GESFTQVARTCY 262 (591)
Q Consensus 251 G~~~~~~~~~~~ 262 (591)
|+..++..+.+.
T Consensus 378 GtN~eeG~~il~ 389 (423)
T PLN02235 378 GPNYQKGLAKMR 389 (423)
T ss_pred CCCHHHHHHHHH
Confidence 888777776664
No 384
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=23.93 E-value=7.9e+02 Score=25.13 Aligned_cols=88 Identities=10% Similarity=0.160 Sum_probs=48.7
Q ss_pred HHHHHcCCCEEEecc-cCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEec---
Q psy17603 200 QALVEAGADILAIET-IPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVN--- 275 (591)
Q Consensus 200 ~~l~~aGvD~i~~ET-~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvN--- 275 (591)
+...+.|+|+|-+-. .+++..++.+++.+|+. +..+.+.+.+...+ ..+.+.+++.+......+++.|.+-
T Consensus 98 ~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~-G~~v~~~i~~~~~~----~~~~~~~~~~~~~~~~~Ga~~i~l~DT~ 172 (275)
T cd07937 98 EKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKA-GKHVEGAICYTGSP----VHTLEYYVKLAKELEDMGADSICIKDMA 172 (275)
T ss_pred HHHHHcCCCEEEEeecCChHHHHHHHHHHHHHC-CCeEEEEEEecCCC----CCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 345678999876543 34566777788888864 45544444332222 2233333333222122345554441
Q ss_pred -CCCchhhHHHHHHHHhc
Q psy17603 276 -CVRPLMVSSLIEQLKTE 292 (591)
Q Consensus 276 -C~~p~~i~~~l~~l~~~ 292 (591)
+..|..+..+++.+++.
T Consensus 173 G~~~P~~v~~lv~~l~~~ 190 (275)
T cd07937 173 GLLTPYAAYELVKALKKE 190 (275)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 24588888888887654
No 385
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=23.87 E-value=3.3e+02 Score=28.30 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCCEEEecccCCHHHHHHHHHHH
Q psy17603 197 PRIQALVEAGADILAIETIPASKEAQMLCRLL 228 (591)
Q Consensus 197 ~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~ 228 (591)
+|++..+++|+|+|++--|+ .+|.+.+++.+
T Consensus 199 e~~~eAl~agaDiImLDNm~-~e~~~~av~~l 229 (280)
T COG0157 199 EEAEEALEAGADIIMLDNMS-PEELKEAVKLL 229 (280)
T ss_pred HHHHHHHHcCCCEEEecCCC-HHHHHHHHHHh
Confidence 34455678999999999986 67888777775
No 386
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=23.66 E-value=1.6e+02 Score=30.55 Aligned_cols=42 Identities=10% Similarity=-0.115 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHhcCCcEEeecCCC---------------CHHHHHHHHHHhhhcc
Q psy17603 368 LCEPVDKYVTDWLDEGVALVGGCCRT---------------YAEDTLHMKHRLDDWV 409 (591)
Q Consensus 368 ~~~~~~~~~~~~~~~Gv~~VGgcCgt---------------gP~~i~~l~~~l~~~~ 409 (591)
+++++.+.++.+.+.|+++|-+||++ .|+.+.++++.+++..
T Consensus 111 ~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~ 167 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV 167 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc
Confidence 45788888888877899999999985 3667888888887654
No 387
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.54 E-value=4.6e+02 Score=27.14 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred EEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHH
Q psy17603 239 SFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEA 318 (591)
Q Consensus 239 Sf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~ 318 (591)
+.-++++..-.-|. +.++++.+....+.... ||+-|...+.+..+++ .|+|.+.+.. .+++++
T Consensus 160 ~vlikdnHi~~~g~-~~~~v~~aR~~~~~~~~-Igvsv~tleea~~A~~--------------~gaDyI~lD~-~~~e~l 222 (277)
T PRK08072 160 GVMIKDNHIAFCGS-ITKAVTSVREKLGHMVK-IEVETETEEQVREAVA--------------AGADIIMFDN-RTPDEI 222 (277)
T ss_pred eEEEchhHHHhhCC-HHHHHHHHHHhCCCCCE-EEEEeCCHHHHHHHHH--------------cCCCEEEECC-CCHHHH
Q ss_pred HHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEE
Q psy17603 319 QMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALV 387 (591)
Q Consensus 319 ~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~V 387 (591)
+.+.+.++ .|+.+...+|-. .+-+.++.+.|++.|
T Consensus 223 ~~~~~~~~-----------------~~i~i~AiGGIt-----------------~~ni~~~a~~Gvd~I 257 (277)
T PRK08072 223 REFVKLVP-----------------SAIVTEASGGIT-----------------LENLPAYGGTGVDYI 257 (277)
T ss_pred HHHHHhcC-----------------CCceEEEECCCC-----------------HHHHHHHHHcCCCEE
No 388
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=23.50 E-value=1.1e+03 Score=26.43 Aligned_cols=59 Identities=20% Similarity=0.073 Sum_probs=33.4
Q ss_pred CcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcE-----EeecCCCCHHHHHHHHHHhhh
Q psy17603 343 NIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVAL-----VGGCCRTYAEDTLHMKHRLDD 407 (591)
Q Consensus 343 ~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~-----VGgcCgtgP~~i~~l~~~l~~ 407 (591)
++||+++|+..-.|... -..|.+...+.++. .=.|++. ++|.=...++....+++.+..
T Consensus 265 ~l~IhaHrA~~ga~~r~---~~~Gis~~vl~kl~---RLaGaD~ih~~t~~Gk~~~~~~~~~~~~~~~~~ 328 (450)
T cd08212 265 GMLLHLHRAGHATYDRQ---KNHGIHFRVLAKWL---RLSGVDHIHAGTVVGKLEGDPLVTLGFYDLLRD 328 (450)
T ss_pred CceEEeccccceecccC---ccCCcCHHHHHHHH---HHcCCCccccCCCcCCcCCCHHHHHHHHHHHhh
Confidence 58899998865444221 11233333343333 3357664 456666667777788777644
No 389
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=23.47 E-value=1.2e+02 Score=32.53 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHhcCCcE-EeecCCCCHHHHH
Q psy17603 369 CEPVDKYVTDWLDEGVAL-VGGCCRTYAEDTL 399 (591)
Q Consensus 369 ~~~~~~~~~~~~~~Gv~~-VGgcCgtgP~~i~ 399 (591)
.+.+...++...+.|+-+ ||.|.|+=+.++.
T Consensus 117 ~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~ 148 (359)
T PF04551_consen 117 REKVKEVVEAAKERGIPIRIGVNSGSLEKDIL 148 (359)
T ss_dssp HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEecccccCcHHHH
Confidence 567888888778888655 9999999887764
No 390
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=23.41 E-value=3.3e+02 Score=28.24 Aligned_cols=53 Identities=9% Similarity=-0.036 Sum_probs=39.1
Q ss_pred CcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhc---CCcEEeecCCC-----------CHHHHHHHHHHhhhc
Q psy17603 343 NIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDE---GVALVGGCCRT-----------YAEDTLHMKHRLDDW 408 (591)
Q Consensus 343 ~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~---Gv~~VGgcCgt-----------gP~~i~~l~~~l~~~ 408 (591)
+.|++++.+. . ++++.+.++.+.+. |+++|=+|+++ .|+.+.++++.+++.
T Consensus 91 ~~pvivsi~g--------------~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~ 155 (294)
T cd04741 91 AKPFFISVTG--------------S-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAA 155 (294)
T ss_pred CCeEEEECCC--------------C-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHh
Confidence 4688886542 2 46778877777664 69999999985 478888898888776
Q ss_pred cc
Q psy17603 409 VS 410 (591)
Q Consensus 409 ~~ 410 (591)
..
T Consensus 156 ~~ 157 (294)
T cd04741 156 YS 157 (294)
T ss_pred cC
Confidence 43
No 391
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=23.27 E-value=3.7e+02 Score=28.40 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=35.5
Q ss_pred CcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCCC---CH--------HHHHHHHHHhhhcc
Q psy17603 343 NIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRT---YA--------EDTLHMKHRLDDWV 409 (591)
Q Consensus 343 ~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCgt---gP--------~~i~~l~~~l~~~~ 409 (591)
+.||+++.+. .+++++.++++.+.+.|+++|=+||+. .| +.+.++++.+++..
T Consensus 99 ~~pvi~si~g--------------~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~ 162 (325)
T cd04739 99 SIPVIASLNG--------------VSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV 162 (325)
T ss_pred CCeEEEEeCC--------------CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc
Confidence 4688886542 234678888888888899999887764 23 23456666666543
No 392
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=23.27 E-value=7.3e+02 Score=26.91 Aligned_cols=70 Identities=17% Similarity=0.253 Sum_probs=41.1
Q ss_pred HHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCC-----cccCCCCHHHHHHHHHhhCCCCeEEEEec
Q psy17603 201 ALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDK-----HISNGESFTQVARTCYNMNPDQLIAVGVN 275 (591)
Q Consensus 201 ~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g-----~l~~G~~~~~~~~~~~~~~~~~~~aiGvN 275 (591)
..++.|+..|.+|++ .|++-+.+. .+..++.+-+...+.. ...-|.+++++.+.+......++..+|+-
T Consensus 97 ~a~~~Gv~~i~vDS~---~El~~i~~~---~~~~~v~lRi~~~~~~~~~~~~~KFGi~~~~~~~~l~~~~~~~l~~~Gih 170 (394)
T cd06831 97 YAAKVGVNIMTCDNE---IELKKIARN---HPNAKLLLHIATEDNIGGEEMNMKFGTTLKNCRHLLECAKELDVQIVGVK 170 (394)
T ss_pred HHHHCCCCEEEECCH---HHHHHHHHh---CCCCcEEEEEeccCCCCCCccCCCCCCCHHHHHHHHHHHHHCCCeEEEEE
Confidence 345679998887774 454444332 3556777766654321 12458888877665432223456777775
Q ss_pred C
Q psy17603 276 C 276 (591)
Q Consensus 276 C 276 (591)
|
T Consensus 171 ~ 171 (394)
T cd06831 171 F 171 (394)
T ss_pred E
Confidence 5
No 393
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=23.21 E-value=6.1e+02 Score=23.56 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCCCEEEecccC-CHHHHHHHHHHHHhc---CCCceEE
Q psy17603 195 HRPRIQALVEAGADILAIETIP-ASKEAQMLCRLLREW---PHQKAWL 238 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET~~-~~~Ea~aa~~a~~~~---~~~pv~v 238 (591)
+.++++.+.++|+|.+-+.-.. +..+....++.+++. .+.++++
T Consensus 14 ~~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 61 (196)
T cd00564 14 LLEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVPLII 61 (196)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 5567778889999998776433 233333344444432 2455554
No 394
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=23.15 E-value=1.1e+03 Score=26.37 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=35.2
Q ss_pred HHHHHHHcCCCEEEec-ccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecC
Q psy17603 198 RIQALVEAGADILAIE-TIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNC 276 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~E-T~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC 276 (591)
|+..-...|+|.+++= .+=.-.+.+..++.++++ ++-++|-. .+.+|+-+.+ ..++..||||=
T Consensus 124 QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~l-Gl~~lvEv-----------h~~~El~~al----~~~a~iiGiNn 187 (454)
T PRK09427 124 QIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSL-NMGVLTEV-----------SNEEELERAI----ALGAKVIGINN 187 (454)
T ss_pred HHHHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHc-CCcEEEEE-----------CCHHHHHHHH----hCCCCEEEEeC
Confidence 4444445799987542 222234566677777764 56666555 1223443333 23567799987
No 395
>PRK14057 epimerase; Provisional
Probab=23.07 E-value=8.3e+02 Score=25.04 Aligned_cols=96 Identities=15% Similarity=0.066 Sum_probs=48.9
Q ss_pred HHHHHHHcCCCEEEe--cccCCHHHHHHHHHHHHhcCCC-------ceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCC
Q psy17603 198 RIQALVEAGADILAI--ETIPASKEAQMLCRLLREWPHQ-------KAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQ 268 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~--ET~~~~~Ea~aa~~a~~~~~~~-------pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~ 268 (591)
.++.|.++|+|+|.+ |+...+ ...++.+|+. +. ++-+.++++| +++++.+...+. .-..
T Consensus 90 ~i~~~~~aGad~It~H~Ea~~~~---~~~l~~Ir~~-G~k~~~~~~~~kaGlAlnP------~Tp~e~i~~~l~--~vD~ 157 (254)
T PRK14057 90 AAQACVKAGAHCITLQAEGDIHL---HHTLSWLGQQ-TVPVIGGEMPVIRGISLCP------ATPLDVIIPILS--DVEV 157 (254)
T ss_pred HHHHHHHhCCCEEEEeeccccCH---HHHHHHHHHc-CCCcccccccceeEEEECC------CCCHHHHHHHHH--hCCE
Confidence 345678899999865 654444 3455666654 32 2344555555 456665544442 1233
Q ss_pred eEEEEecC--CCchhhHHHHHHHHh-------cCCceEEecCCCCc
Q psy17603 269 LIAVGVNC--VRPLMVSSLIEQLKT-------ENIPLVVYPNSGEH 305 (591)
Q Consensus 269 ~~aiGvNC--~~p~~i~~~l~~l~~-------~~~~i~~l~~aG~D 305 (591)
+....+|= .+-..+...++.+++ ....+...+++|+.
T Consensus 158 VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~ 203 (254)
T PRK14057 158 IQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLT 203 (254)
T ss_pred EEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCC
Confidence 34444442 122334444443332 12235566777764
No 396
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=22.93 E-value=8.4e+02 Score=25.17 Aligned_cols=181 Identities=14% Similarity=0.052 Sum_probs=0.0
Q ss_pred ccCHHHHHHHHHHHHHHhcceeeccccccChhchhhhcCCChHHHHHHH-HHHHHHHHHHHHHHhhhccccCCCCccccc
Q psy17603 35 ATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQLI-KSSVDYVKEAIALEATHARIRSDDPARDIL 113 (591)
Q Consensus 35 ~~~Pe~v~~vH~~yl~AGAdiI~TnTy~as~~~l~~~~g~~~~~~~~l~-~~av~lA~~a~~~~~~~~~~~~~~~~~~~~ 113 (591)
+|.+|.+.++-+..-++|+++....-|.++..+--|. |....+-+= ..+.++-+++.++
T Consensus 20 vEs~e~~~~~A~~lk~~~~~~~~~~~fK~sf~KapRT---Sp~sFqG~G~eeGL~~L~~vk~~----------------- 79 (264)
T PRK05198 20 IESRDLALRIAEHLKEITDKLGIPYVFKASFDKANRS---SIHSFRGPGLEEGLKILQEVKET----------------- 79 (264)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCCeEEeccccCCCCC---CCCCCCCCChHHHHHHHHHHHHH-----------------
Q ss_pred cccccCCCCCccCCCCcccCccchhhhhhhHhhhhccccCCCCcceeEeeccCCCCCCCCCCCCCCCCcCCCCCHHHHHH
Q psy17603 114 IAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAE 193 (591)
Q Consensus 114 va~~~gp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~ga~l~~g~eY~g~y~~~~~~e~l~~ 193 (591)
.+-++. .+-.+.+++..
T Consensus 80 -----------------------------------------~Glpvv----------------------TeV~~~~~~~~ 96 (264)
T PRK05198 80 -----------------------------------------FGVPVL----------------------TDVHEPEQAAP 96 (264)
T ss_pred -----------------------------------------HCCceE----------------------EEeCCHHHHHH
Q ss_pred HHHHHHHHHHHcCCCEEEecccCC-------------------------HHHHHHHHHHHHhcCCCceEEEEEecCCCcc
Q psy17603 194 WHRPRIQALVEAGADILAIETIPA-------------------------SKEAQMLCRLLREWPHQKAWLSFSCKDDKHI 248 (591)
Q Consensus 194 ~h~~~i~~l~~aGvD~i~~ET~~~-------------------------~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l 248 (591)
... -+|+|-+-++.. ..|.+.+++.+....+..+++.= -|.+
T Consensus 97 v~~---------~~DilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcE----RG~t 163 (264)
T PRK05198 97 VAE---------VVDVLQIPAFLCRQTDLLVAAAKTGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCE----RGTS 163 (264)
T ss_pred HHh---------hCcEEEECchhcchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEe----CCCC
Q ss_pred cCCCCHHHHHHHHHhhCCCCeEEEEecCCCc-----------hhhHHHHHHHHhcCCceEEecCCCCccceeecccccHH
Q psy17603 249 SNGESFTQVARTCYNMNPDQLIAVGVNCVRP-----------LMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKE 317 (591)
Q Consensus 249 ~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p-----------~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E 317 (591)
-.-+.+.--++.+-.....+ .-|-+..+|. .--+.++..|... -+.+|+|.+++||-+|.++
T Consensus 164 f~y~r~~~D~~~vp~~k~~~-lPVi~DpSHsvq~pg~~~~~s~G~r~~v~~la~A------AvA~GadGl~iEvHpdP~~ 236 (264)
T PRK05198 164 FGYNNLVVDMRGLPIMRETG-APVIFDATHSVQLPGGQGGSSGGQREFVPVLARA------AVAVGVAGLFIETHPDPDN 236 (264)
T ss_pred cCCCCeeechhhhHHHhhCC-CCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHH------HHHcCCCEEEEEeCCCccc
Q ss_pred H
Q psy17603 318 A 318 (591)
Q Consensus 318 ~ 318 (591)
+
T Consensus 237 A 237 (264)
T PRK05198 237 A 237 (264)
T ss_pred c
No 397
>PLN02892 isocitrate lyase
Probab=22.84 E-value=1.2e+02 Score=34.35 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=26.6
Q ss_pred cCCCEEEecc-cCCHHHHHHHHHHHH-hcCCC
Q psy17603 205 AGADILAIET-IPASKEAQMLCRLLR-EWPHQ 234 (591)
Q Consensus 205 aGvD~i~~ET-~~~~~Ea~aa~~a~~-~~~~~ 234 (591)
..+|+|+.|| -|++.+|+...+.++ .+|++
T Consensus 399 PyaDliW~ET~~Pdl~~A~~Fa~~V~~~~P~k 430 (570)
T PLN02892 399 PYADLIWMETASPDLAEATKFAEGVKAKHPEI 430 (570)
T ss_pred cccCEEEecCCCCCHHHHHHHHHHHHHhCCCC
Confidence 4799999999 899999999999999 46776
No 398
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=22.75 E-value=3.9e+02 Score=27.01 Aligned_cols=96 Identities=16% Similarity=0.069 Sum_probs=51.0
Q ss_pred HHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCC
Q psy17603 199 IQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVR 278 (591)
Q Consensus 199 i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~ 278 (591)
++.|.++||+.+-+|-.. |....++++++. ..|++ .-++ .....+ .. ..+....|- .
T Consensus 95 ~~~l~~aGa~gv~iED~~---~~~~~i~ai~~a-~i~Vi--aRtd--------~~pq~~-~~-----~gg~~~~~~---~ 151 (240)
T cd06556 95 AKTFMRAGAAGVKIEGGE---WHIETLQMLTAA-AVPVI--AHTG--------LTPQSV-NT-----SGGDEGQYR---G 151 (240)
T ss_pred HHHHHHcCCcEEEEcCcH---HHHHHHHHHHHc-CCeEE--EEeC--------Cchhhh-hc-----cCCceeecc---C
Confidence 345778999999999853 444445555542 33333 2111 111000 00 001111111 1
Q ss_pred chhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHH
Q psy17603 279 PLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLL 325 (591)
Q Consensus 279 p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~ 325 (591)
...+..+++..+ +|.++|+|.+++|.. +.++++...+.+
T Consensus 152 ~~~~~~ai~Ra~-------ay~~AGAd~i~~e~~-~~e~~~~i~~~~ 190 (240)
T cd06556 152 DEAGEQLIADAL-------AYAPAGADLIVMECV-PVELAKQITEAL 190 (240)
T ss_pred HHHHHHHHHHHH-------HHHHcCCCEEEEcCC-CHHHHHHHHHhC
Confidence 223445555443 456799999999977 888777766654
No 399
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=22.74 E-value=9.3e+02 Score=25.52 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=14.7
Q ss_pred HHHHHHHcCCCEEEecccCC
Q psy17603 198 RIQALVEAGADILAIETIPA 217 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~ET~~~ 217 (591)
.++.+.+.|+..+.+-|+..
T Consensus 71 ~~~~~~~~G~Gavv~kTvt~ 90 (335)
T TIGR01036 71 AIDALGAMGFGFLEIGTVTP 90 (335)
T ss_pred HHHHHHhcCCCEEEeCCcCC
Confidence 34455678999999998763
No 400
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=22.74 E-value=3.1e+02 Score=29.04 Aligned_cols=103 Identities=17% Similarity=0.117 Sum_probs=59.5
Q ss_pred ccCCcchhHHHHHHHHHcCCcEEEeecCCcHHHHHHHHhccccc--------------------------CC--------
Q psy17603 466 DRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDW--------------------------DD-------- 511 (591)
Q Consensus 466 ~~~~~e~~a~~~~~~~~~G~~~vgGCcgttp~~i~~l~~~~~~~--------------------------d~-------- 511 (591)
++++.+..++.+....++|+++|+=|- --...|.++|++++.- +.
T Consensus 140 ND~Tl~~L~~~Al~~A~AGaDiVAPSd-MMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdA~~Sap~~gDrk 218 (323)
T PRK09283 140 NDETLELLAKQALSQAEAGADIVAPSD-MMDGRVGAIREALDEAGFTDVPIMSYSAKYASAFYGPFRDAAGSAPQFGDRK 218 (323)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEccc-ccccHHHHHHHHHHHCCCCCCceeecHHHHHHhhhHHHHHHHhcCCCCCCcc
Confidence 344556678888888999999998443 2344677777776432 00
Q ss_pred CCCCCCCcHHHHHHHhhhcCCCCeeEEEEcCCChhhHHHHHHHhhh-cCCcEEEecCCCCc
Q psy17603 512 KHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQLKT-ENIPLVVYPNSGER 571 (591)
Q Consensus 512 ~~l~dG~~l~~~~~~~~~~~~~~~~avGiNC~~p~~v~~~i~~l~~-~~~pl~vYPNsG~~ 571 (591)
.+-.|--.-.++++.+.-...+..+.|-|-=.- .-.++|+.+++ .+.|+.+|-=|||-
T Consensus 219 tYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal--~YLDIi~~~k~~~~~PvaaYqVSGEY 277 (323)
T PRK09283 219 TYQMDPANRREALREVALDIEEGADMVMVKPAL--PYLDIIRRVKDEFNLPVAAYQVSGEY 277 (323)
T ss_pred ccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCc--hHHHHHHHHHhcCCCCEEEEEccHHH
Confidence 122222233345544431123344555554311 23455666666 57999999999973
No 401
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=22.71 E-value=6.8e+02 Score=23.91 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCCEEEeccc
Q psy17603 195 HRPRIQALVEAGADILAIETI 215 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET~ 215 (591)
+.++++.++++|+|+|-+--.
T Consensus 23 ~~~~~~~~~~~gv~~v~lr~~ 43 (212)
T PRK00043 23 LLEVVEAALEGGVTLVQLREK 43 (212)
T ss_pred HHHHHHHHHhcCCCEEEEeCC
Confidence 456777889999999977543
No 402
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=22.60 E-value=1.3e+02 Score=32.07 Aligned_cols=78 Identities=18% Similarity=0.125 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCCEEE---ecccCC------------HHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHH
Q psy17603 196 RPRIQALVEAGADILA---IETIPA------------SKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVART 260 (591)
Q Consensus 196 ~~~i~~l~~aGvD~i~---~ET~~~------------~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~ 260 (591)
+++++.|.++|+|.+. +||+.. .++-..+++.+++. +.++-..+-++ .|++.++.++.
T Consensus 150 ~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~-Gi~~~sg~i~G------lgEt~edrv~~ 222 (351)
T TIGR03700 150 EEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHEL-GLKTNATMLYG------HIETPAHRVDH 222 (351)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHc-CCCcceEEEee------CCCCHHHHHHH
Confidence 4567788899999774 788631 23334567777774 78877666554 37888888887
Q ss_pred HHhhCCCCeEEEEecCCCch
Q psy17603 261 CYNMNPDQLIAVGVNCVRPL 280 (591)
Q Consensus 261 ~~~~~~~~~~aiGvNC~~p~ 280 (591)
+......+..-.|++..-|.
T Consensus 223 l~~Lr~l~~~~~~f~~fiP~ 242 (351)
T TIGR03700 223 MLRLRELQDETGGFQAFIPL 242 (351)
T ss_pred HHHHHHhhHhhCCceEEEee
Confidence 75433344444566655554
No 403
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=22.50 E-value=1.5e+02 Score=30.61 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=33.7
Q ss_pred CCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccCCH
Q psy17603 172 LRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPAS 218 (591)
Q Consensus 172 l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~ 218 (591)
..+|.-|-+.+ .+.+.-+.+.++.+..+...|+|+++||+|-..
T Consensus 242 PS~G~~~G~a~---pS~anq~~~~~~i~~~~~~~G~d~fvfeAFdd~ 285 (305)
T COG5309 242 PSDGRTYGSAV---PSVANQKIAVQEILNALRSCGYDVFVFEAFDDD 285 (305)
T ss_pred CCCCCccCCcC---CChhHHHHHHHHHHhhhhccCccEEEeeecccc
Confidence 34555544433 578888899998888888899999999999654
No 404
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=22.33 E-value=8.1e+02 Score=24.68 Aligned_cols=75 Identities=12% Similarity=0.228 Sum_probs=44.6
Q ss_pred hHHHHHHHH-HcCCcEEE-eecCCcHHHHHHHHhcccccCCCCCCCCCcHHHHHHHhhhcCCCCeeEEEEcCCChhhHHH
Q psy17603 473 VDKYVTDWL-DEGVALVG-GCCRTYAEDTLHMKHRLDDWDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSP 550 (591)
Q Consensus 473 ~a~~~~~~~-~~G~~~vg-GCcgttp~~i~~l~~~~~~~d~~~l~dG~~l~~~~~~~~~~~~~~~~avGiNC~~p~~v~~ 550 (591)
..+..++|+ +.|..++. ++.|-...+ .+.+ -+.+.+.+++..+ ..+.++||=+-|+.. ...+
T Consensus 133 v~~~~~~~l~~~G~eV~~~~~~~~~~~~--~ia~----------i~p~~i~~~~~~~---~~~~aDAifisCTnL-rt~~ 196 (239)
T TIGR02990 133 TSRPMAQYFAVRGFEIVNFTCLGLTDDR--EMAR----------ISPDCIVEAALAA---FDPDADALFLSCTAL-RAAT 196 (239)
T ss_pred HHHHHHHHHHhCCcEEeeeeccCCCCCc--eeee----------cCHHHHHHHHHHh---cCCCCCEEEEeCCCc-hhHH
Confidence 344444443 57777766 456543320 0111 2233455555554 355789999999884 7778
Q ss_pred HHHHhhh-cCCcEE
Q psy17603 551 LIEQLKT-ENIPLV 563 (591)
Q Consensus 551 ~i~~l~~-~~~pl~ 563 (591)
+++.+.. .++|++
T Consensus 197 vi~~lE~~lGkPVl 210 (239)
T TIGR02990 197 CAQRIEQAIGKPVV 210 (239)
T ss_pred HHHHHHHHHCCCEE
Confidence 8888877 689974
No 405
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=22.25 E-value=3e+02 Score=28.63 Aligned_cols=87 Identities=15% Similarity=0.224 Sum_probs=54.0
Q ss_pred CCceEEE--eccHHHHHHhccCCCCCCCCCcchhhhccCHHHHHHHHHHHHHHhcceee-ccccccChhchhhhcCCChH
Q psy17603 1 MANVKLI--DGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVM-TNSYQASIGGFMEFLDLDYD 77 (591)
Q Consensus 1 ~~~~lil--DGg~gT~L~~~~g~~~~~~~lWs~~~l~~~Pe~v~~vH~~yl~AGAdiI~-TnTy~as~~~l~~~~g~~~~ 77 (591)
|+ +||+ .|-+|++|.+.++...+--.+=...+.+++|+.|+++.++. =-|+|+ |+-|. +...-.. .++
T Consensus 1 M~-iLi~G~~GqLG~~L~~~l~~~~~v~a~~~~~~Ditd~~~v~~~i~~~---~PDvVIn~AAyt-~vD~aE~----~~e 71 (281)
T COG1091 1 MK-ILITGANGQLGTELRRALPGEFEVIATDRAELDITDPDAVLEVIRET---RPDVVINAAAYT-AVDKAES----EPE 71 (281)
T ss_pred Cc-EEEEcCCChHHHHHHHHhCCCceEEeccCccccccChHHHHHHHHhh---CCCEEEECcccc-ccccccC----CHH
Confidence 55 5554 46689999998541111111113557899999999986665 346544 44443 3333222 267
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy17603 78 SSYQLIKSSVDYVKEAIAL 96 (591)
Q Consensus 78 ~~~~l~~~av~lA~~a~~~ 96 (591)
.+..+|..++..-.+++.+
T Consensus 72 ~A~~vNa~~~~~lA~aa~~ 90 (281)
T COG1091 72 LAFAVNATGAENLARAAAE 90 (281)
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 8888999988877777665
No 406
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=22.20 E-value=3.4e+02 Score=26.31 Aligned_cols=71 Identities=10% Similarity=0.055 Sum_probs=44.9
Q ss_pred CCcEEEeecCCcHHHHH---HHHhc--ccccCCCCCCCCCcHHHHHHHhhhcCCCCeeEEEEcC---CChhhHHHHHHHh
Q psy17603 484 GVALVGGCCRTYAEDTL---HMKHR--LDDWDDKHISNGESFTQVARTCYNMNPDQLIAVGVNC---VRPLMVSPLIEQL 555 (591)
Q Consensus 484 G~~~vgGCcgttp~~i~---~l~~~--~~~~d~~~l~dG~~l~~~~~~~~~~~~~~~~avGiNC---~~p~~v~~~i~~l 555 (591)
+-++|.+|.+-= .|-. -++.. ..+|+--++-...|.+++++.+. ..+++.||+.| .....+.++++.+
T Consensus 82 ~~~vl~~~~~gd-~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~---~~~~d~v~lS~~~~~~~~~~~~~i~~l 157 (201)
T cd02070 82 KGKVVIGTVEGD-IHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVK---EHKPDILGLSALMTTTMGGMKEVIEAL 157 (201)
T ss_pred CCeEEEEecCCc-cchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH---HcCCCEEEEeccccccHHHHHHHHHHH
Confidence 346777887642 1221 11111 24666555667889999999986 44678888888 3445666677777
Q ss_pred hhc
Q psy17603 556 KTE 558 (591)
Q Consensus 556 ~~~ 558 (591)
+..
T Consensus 158 r~~ 160 (201)
T cd02070 158 KEA 160 (201)
T ss_pred HHC
Confidence 664
No 407
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=22.20 E-value=8.1e+02 Score=24.60 Aligned_cols=95 Identities=17% Similarity=0.227 Sum_probs=48.5
Q ss_pred HHHHHHHcCCCEEEe--cccCCHHHHHHHHHHHHhcCCCceEEEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEec
Q psy17603 198 RIQALVEAGADILAI--ETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVN 275 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~--ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvN 275 (591)
.++.|.++|+|+|.+ |+.. .....+++.+|+. +.++-+++ +| +++++.+...+. .-..+....+|
T Consensus 74 ~i~~~~~aGad~it~H~Ea~~--~~~~~~i~~Ik~~-G~kaGlal--nP------~T~~~~l~~~l~--~vD~VLvMsV~ 140 (229)
T PRK09722 74 YIDQLADAGADFITLHPETIN--GQAFRLIDEIRRA-GMKVGLVL--NP------ETPVESIKYYIH--LLDKITVMTVD 140 (229)
T ss_pred HHHHHHHcCCCEEEECccCCc--chHHHHHHHHHHc-CCCEEEEe--CC------CCCHHHHHHHHH--hcCEEEEEEEc
Confidence 455778999998765 6432 1234466777764 55554444 43 456655544442 12344444444
Q ss_pred C--CCchhhHHHHHHHHh---c----CCceEEecCCCCc
Q psy17603 276 C--VRPLMVSSLIEQLKT---E----NIPLVVYPNSGEH 305 (591)
Q Consensus 276 C--~~p~~i~~~l~~l~~---~----~~~i~~l~~aG~D 305 (591)
= .+-..+...++.+++ . ...+...+++|+.
T Consensus 141 PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~ 179 (229)
T PRK09722 141 PGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN 179 (229)
T ss_pred CCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 2 122234444433332 1 2235567778875
No 408
>PF00463 ICL: Isocitrate lyase family; InterPro: IPR000918 Isocitrate lyase (4.1.3.1 from EC) [, ] is an enzyme that catalyzes the conversion of isocitrate to succinate and glyoxylate. This is the first step in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. A cysteine, a histidine and a glutamate or aspartate have been found to be important for the enzyme's catalytic activity. Only one cysteine residue is conserved between the sequences of the fungal, plant and bacterial enzymes; it is located in the middle of a conserved hexapeptide. Other enzymes also belong to this family including carboxyvinyl-carboxyphosphonate phosphorylmutase (2.7.8.23 from EC) which catalyses the conversion of 1-carboxyvinyl carboxyphosphonate to 3-(hydrohydroxyphosphoryl) pyruvate carbon dioxide, and phosphoenolpyruvate mutase (5.4.2.9 from EC), which is involved in the biosynthesis of phosphinothricin tripeptide antiobiotics. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1IGW_D 3P0X_B 3EOL_B 3E5B_B 3OQ8_D 3LG3_A 3I4E_D 1F8I_B 1F8M_D 1F61_A ....
Probab=22.18 E-value=77 Score=35.59 Aligned_cols=60 Identities=18% Similarity=0.296 Sum_probs=0.0
Q ss_pred CCccceeec-ccccHHHHHHHHHHhhccccccccccccCCCCcc--eEEecCCCcceeccCCeecCCCChHHHHHHHHHH
Q psy17603 303 GEHILAIET-IPASKEAQMLCRLLREWPNQKAWLSFSCKTENIP--LVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDW 379 (591)
Q Consensus 303 G~D~l~iET-~~d~~E~~~a~~~~~~~~~~~~~~s~~~~~~~~p--l~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~ 379 (591)
.+|++++|| -||+.+++.-...+++. .| .++| |...+| .|....+.+++..+..++
T Consensus 378 yADllW~ET~~Pd~~~a~~Fa~~V~~~---------------~P~k~LaY-NlSPSF-----NW~~~~~~~ei~~F~~dL 436 (526)
T PF00463_consen 378 YADLLWMETKTPDLAQAKEFAEGVHAV---------------YPGKKLAY-NLSPSF-----NWDAAGSDDEIKSFQWDL 436 (526)
T ss_dssp G-SEEEE--SS--HHHHHHHHHHHHHH---------------STT-EEEE-EE-SSS-----THHHHS-HHHHHHHHHHH
T ss_pred ccCeeeEecCCCCHHHHHHHHHHHHHh---------------CCcceEEe-cCCccc-----chhhhhhhhHHHHHHHHH
Q ss_pred HhcC
Q psy17603 380 LDEG 383 (591)
Q Consensus 380 ~~~G 383 (591)
..+|
T Consensus 437 ak~G 440 (526)
T PF00463_consen 437 AKLG 440 (526)
T ss_dssp HHTT
T ss_pred Hhhh
No 409
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=22.14 E-value=2.4e+02 Score=24.17 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCCCEEEecc--cCCHHHHHHHHHHHHhcCCCceEEE
Q psy17603 195 HRPRIQALVEAGADILAIET--IPASKEAQMLCRLLREWPHQKAWLS 239 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET--~~~~~Ea~aa~~a~~~~~~~pv~vS 239 (591)
|.+.++.++++|.+++ .|- ..+..|++.+++++++ .+.+++|.
T Consensus 75 h~~~~~~~l~~g~~v~-~EKP~~~~~~~~~~l~~~a~~-~~~~~~Vg 119 (120)
T PF01408_consen 75 HAEIAKKALEAGKHVL-VEKPLALTLEEAEELVEAAKE-KGVKVMVG 119 (120)
T ss_dssp HHHHHHHHHHTTSEEE-EESSSSSSHHHHHHHHHHHHH-HTSCEEEE
T ss_pred hHHHHHHHHHcCCEEE-EEcCCcCCHHHHHHHHHHHHH-hCCEEEEe
Confidence 6666666677777433 353 3356666666666665 24555554
No 410
>PLN02321 2-isopropylmalate synthase
Probab=21.96 E-value=1.3e+03 Score=26.93 Aligned_cols=68 Identities=21% Similarity=0.241 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEe-cccCC--HHHHHHHHHHHHh-cCCC-ceEEEEEecCCCcccCCCCHHHHHHH
Q psy17603 186 VSEATMAEWHRPRIQALVEAGADILAI-ETIPA--SKEAQMLCRLLRE-WPHQ-KAWLSFSCKDDKHISNGESFTQVART 260 (591)
Q Consensus 186 ~~~e~l~~~h~~~i~~l~~aGvD~i~~-ET~~~--~~Ea~aa~~a~~~-~~~~-pv~vSf~~~~~g~l~~G~~~~~~~~~ 260 (591)
.+++.+.++. +.+.++|+|.|.+ -|++. ..+....++.+++ +++. ++.+++-|.+|- |.-+..++..
T Consensus 237 td~d~l~~~~----~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~----GlAvANslaA 308 (632)
T PLN02321 237 SDPEFLYRIL----GEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQNDL----GLSTANTLAG 308 (632)
T ss_pred CCHHHHHHHH----HHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCC----CHHHHHHHHH
Confidence 3455555554 4678899998855 46554 4677777887774 4554 488999887753 4344444444
Q ss_pred H
Q psy17603 261 C 261 (591)
Q Consensus 261 ~ 261 (591)
+
T Consensus 309 v 309 (632)
T PLN02321 309 A 309 (632)
T ss_pred H
Confidence 4
No 411
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=21.90 E-value=1.1e+03 Score=26.26 Aligned_cols=85 Identities=11% Similarity=0.188 Sum_probs=48.2
Q ss_pred HHHHcCCCEEE-ecccCCHHHHHHHHHHHHhcCCCceE--EEEEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEec--
Q psy17603 201 ALVEAGADILA-IETIPASKEAQMLCRLLREWPHQKAW--LSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVN-- 275 (591)
Q Consensus 201 ~l~~aGvD~i~-~ET~~~~~Ea~aa~~a~~~~~~~pv~--vSf~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvN-- 275 (591)
...++|+|+|- |-..+++..++..++++++. +..+. +++++.+ -.+++..++.+......+++.|.+-
T Consensus 103 ~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~-G~~v~~~i~~t~~p------~~t~e~~~~~a~~l~~~Gad~I~i~Dt 175 (467)
T PRK14041 103 KVAEYGLDIIRIFDALNDIRNLEKSIEVAKKH-GAHVQGAISYTVSP------VHTLEYYLEFARELVDMGVDSICIKDM 175 (467)
T ss_pred HHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHC-CCEEEEEEEeccCC------CCCHHHHHHHHHHHHHcCCCEEEECCc
Confidence 45688999764 44556677777777888763 44443 3333332 1233333333322223455555442
Q ss_pred --CCCchhhHHHHHHHHhc
Q psy17603 276 --CVRPLMVSSLIEQLKTE 292 (591)
Q Consensus 276 --C~~p~~i~~~l~~l~~~ 292 (591)
+..|..+..+++.+++.
T Consensus 176 ~G~l~P~~v~~Lv~~lk~~ 194 (467)
T PRK14041 176 AGLLTPKRAYELVKALKKK 194 (467)
T ss_pred cCCcCHHHHHHHHHHHHHh
Confidence 35688899998888754
No 412
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=21.88 E-value=3e+02 Score=28.06 Aligned_cols=95 Identities=19% Similarity=0.145 Sum_probs=50.4
Q ss_pred chhHHHHHHHHHcCCcEEE-eecCCcHH--------HHHHHHhcccccC---CCCCCCCCcHHHHHHHhhhcCCCCeeEE
Q psy17603 471 EPVDKYVTDWLDEGVALVG-GCCRTYAE--------DTLHMKHRLDDWD---DKHISNGESFTQVARTCYNMNPDQLIAV 538 (591)
Q Consensus 471 e~~a~~~~~~~~~G~~~vg-GCcgttp~--------~i~~l~~~~~~~d---~~~l~dG~~l~~~~~~~~~~~~~~~~av 538 (591)
+...+.++++++.|+.+|= |.++|.|. +++.+...++... +.-++=-|.=.++++.+. +. .+.
T Consensus 24 ~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~~~v~e~al--~~-G~~-- 98 (257)
T cd00739 24 DKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVDTFRAEVARAAL--EA-GAD-- 98 (257)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCCHHHHHHHH--Hh-CCC--
Confidence 4456778888999998887 77776432 4444443333221 111222222334444443 12 122
Q ss_pred EEcCCChhhH-HHHHHHhhhcCCcEEEecCCCC
Q psy17603 539 GVNCVRPLMV-SPLIEQLKTENIPLVVYPNSGE 570 (591)
Q Consensus 539 GiNC~~p~~v-~~~i~~l~~~~~pl~vYPNsG~ 570 (591)
-||=++-..- ..+++.+++.+.+++++++.|.
T Consensus 99 iINdisg~~~~~~~~~l~~~~~~~vV~m~~~g~ 131 (257)
T cd00739 99 IINDVSGGSDDPAMLEVAAEYGAPLVLMHMRGT 131 (257)
T ss_pred EEEeCCCCCCChHHHHHHHHcCCCEEEECCCCC
Confidence 2554222111 4555556667899999998764
No 413
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=21.79 E-value=1.2e+03 Score=26.63 Aligned_cols=184 Identities=13% Similarity=0.116 Sum_probs=91.9
Q ss_pred CCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccCCH--HHHHHHHHHHHhc--CCCceEEEEEecCCC
Q psy17603 171 SLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPAS--KEAQMLCRLLREW--PHQKAWLSFSCKDDK 246 (591)
Q Consensus 171 ~l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~--~Ea~aa~~a~~~~--~~~pv~vSf~~~~~g 246 (591)
.|.||.--.| ..++.++-.++.+ .|.+.|+|.|-+- ||+. .|..++.++++.. +....+..++- .
T Consensus 33 TLRDG~Q~~g---~~~s~e~Ki~ia~----~L~~~Gvd~IE~G-fp~~s~~D~e~v~~i~~~~l~~~~~~i~al~~--~- 101 (564)
T TIGR00970 33 DLRDGNQALP---DPMSPARKRRYFD----LLVRIGFKEIEVG-FPSASQTDFDFVREIIEQGAIPDDVTIQVLTQ--S- 101 (564)
T ss_pred CCCccccCCC---CCCCHHHHHHHHH----HHHHcCCCEEEEe-CCCCCHHHHHHHHHHHHhcCCCCCcEEEEEcC--C-
Confidence 5666643223 2467788777766 6788999999765 7654 5555566665541 11223333321 1
Q ss_pred cccCCCCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHHHHHHHh
Q psy17603 247 HISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLR 326 (591)
Q Consensus 247 ~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~a~~~~~ 326 (591)
.. ..+..+++.+.. ......--+..+++.++...++. ..+ ..++.++.+++.++
T Consensus 102 --~~-~did~a~~a~~~--~~~~~v~i~~~~Sd~h~~~~l~~---s~e------------------e~l~~~~~~v~~ak 155 (564)
T TIGR00970 102 --RE-ELIERTFEALSG--AKRATVHFYNATSILFREVVFRA---SRA------------------EVQAIATDGTKLVR 155 (564)
T ss_pred --ch-hhHHHHHHHhcC--CCCCEEEEEEcCCHHHHHHHhCC---CHH------------------HHHHHHHHHHHHHH
Confidence 11 124445544321 11112222345666655444321 100 01334555666666
Q ss_pred hccccccccccccCCCCcceEEecCC--CcceeccCCeecCCCChHHHHHHHHHHHhcCCc------EEeecCC---CCH
Q psy17603 327 EWPNQKAWLSFSCKTENIPLVVYPNS--GERYDAVNARWIDRDLCEPVDKYVTDWLDEGVA------LVGGCCR---TYA 395 (591)
Q Consensus 327 ~~~~~~~~~s~~~~~~~~pl~~~pn~--g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~------~VGgcCg---tgP 395 (591)
+.... ...++.. +.+|+..+ ....+++.+.+.++.+.+.|+. .|.+|=. ..|
T Consensus 156 ~~~~~--------------~~~~~~~~~~v~f~~Ed---~~r~d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P 218 (564)
T TIGR00970 156 KCTKQ--------------AAKYPGTQWRFEYSPES---FSDTELEFAKEVCEAVKEVWAPTPERPIIFNLPATVEMTTP 218 (564)
T ss_pred Hhccc--------------ccccccceEEEEEeccc---CCCCCHHHHHHHHHHHHHhCCCccCCeeEEEeccccCccCH
Confidence 65310 0000000 11122211 1234567788888888888863 5544322 269
Q ss_pred HHHHHHHHHhhhc
Q psy17603 396 EDTLHMKHRLDDW 408 (591)
Q Consensus 396 ~~i~~l~~~l~~~ 408 (591)
..+..+++.+...
T Consensus 219 ~~~~~~i~~l~~~ 231 (564)
T TIGR00970 219 NVYADSIEYFSTN 231 (564)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998888664
No 414
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=21.74 E-value=4e+02 Score=23.12 Aligned_cols=49 Identities=12% Similarity=0.228 Sum_probs=32.0
Q ss_pred cccCCCCCCCCCcHHHHHHHhhhcCCCCeeEEEEcCC---ChhhHHHHHHHhhhc
Q psy17603 507 DDWDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCV---RPLMVSPLIEQLKTE 558 (591)
Q Consensus 507 ~~~d~~~l~dG~~l~~~~~~~~~~~~~~~~avGiNC~---~p~~v~~~i~~l~~~ 558 (591)
.+|+--++-...|.+++++.+. ..+++.|++.|+ ....+.++++.+++.
T Consensus 26 ~G~~V~~lg~~~~~~~l~~~~~---~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~ 77 (119)
T cd02067 26 AGFEVIDLGVDVPPEEIVEAAK---EEDADAIGLSGLLTTHMTLMKEVIEELKEA 77 (119)
T ss_pred CCCEEEECCCCCCHHHHHHHHH---HcCCCEEEEeccccccHHHHHHHHHHHHHc
Confidence 4554444546688888888875 446788888885 344555666666663
No 415
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=21.65 E-value=6.6e+02 Score=23.35 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHHhcceeeccc
Q psy17603 37 AKDAVVQTHRDFIKAGADIVMTNS 60 (591)
Q Consensus 37 ~Pe~v~~vH~~yl~AGAdiI~TnT 60 (591)
+.+.++++.+..+++|++-|.++-
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g 34 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP 34 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH
Confidence 788899999999999999887774
No 416
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=21.64 E-value=9.1e+02 Score=24.98 Aligned_cols=63 Identities=14% Similarity=0.224 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHcCCCEEEec-ccCC--HHHHHHHHHHHHh-cCCCceEEEEEecCCCcccCCCCHHHHHHHH
Q psy17603 193 EWHRPRIQALVEAGADILAIE-TIPA--SKEAQMLCRLLRE-WPHQKAWLSFSCKDDKHISNGESFTQVARTC 261 (591)
Q Consensus 193 ~~h~~~i~~l~~aGvD~i~~E-T~~~--~~Ea~aa~~a~~~-~~~~pv~vSf~~~~~g~l~~G~~~~~~~~~~ 261 (591)
+++.+.++.+.++|+|.|.+- |.+. ..++...++.+++ +++.| +.+-+.++ .|..+..++..+
T Consensus 155 ~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~--i~~H~Hn~----~Gla~AN~laA~ 221 (287)
T PRK05692 155 EAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAER--LAGHFHDT----YGQALANIYASL 221 (287)
T ss_pred HHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCe--EEEEecCC----CCcHHHHHHHHH
Confidence 344455557788999988664 6554 4567777777774 34344 56666554 355666666665
No 417
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=21.53 E-value=8.5e+02 Score=24.61 Aligned_cols=102 Identities=9% Similarity=0.188 Sum_probs=52.3
Q ss_pred HHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEecCC--C--c-------ccCCCCHHHHHHHHHhhCCC
Q psy17603 199 IQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDD--K--H-------ISNGESFTQVARTCYNMNPD 267 (591)
Q Consensus 199 i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~~~--g--~-------l~~G~~~~~~~~~~~~~~~~ 267 (591)
++.+++.|+|.+.+.|.- +.....+.++++++....+.+|+.++.. + + -....++.+.++.+.+....
T Consensus 89 ~~~l~~~G~~~vvigs~~-~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~ 167 (258)
T PRK01033 89 AKKIFSLGVEKVSINTAA-LEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAG 167 (258)
T ss_pred HHHHHHCCCCEEEEChHH-hcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCC
Confidence 444557799999988731 2222334445555543457788887643 1 1 12344567777777442223
Q ss_pred CeEEEEecC----CCchhhHHHHHHHHhcCCceEEecCCCC
Q psy17603 268 QLIAVGVNC----VRPLMVSSLIEQLKTENIPLVVYPNSGE 304 (591)
Q Consensus 268 ~~~aiGvNC----~~p~~i~~~l~~l~~~~~~i~~l~~aG~ 304 (591)
.+..-++.. .+| -.++++.+.+. ..+-...++|+
T Consensus 168 ~ii~~~i~~~G~~~G~--d~~~i~~~~~~-~~ipvIasGGv 205 (258)
T PRK01033 168 EILLNSIDRDGTMKGY--DLELLKSFRNA-LKIPLIALGGA 205 (258)
T ss_pred EEEEEccCCCCCcCCC--CHHHHHHHHhh-CCCCEEEeCCC
Confidence 333333333 223 23344444433 23445667775
No 418
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=21.51 E-value=9.1e+02 Score=24.96 Aligned_cols=41 Identities=12% Similarity=0.004 Sum_probs=30.6
Q ss_pred HHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEEEec
Q psy17603 201 ALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCK 243 (591)
Q Consensus 201 ~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf~~~ 243 (591)
...+.+-=+-.|++. ++.-++++++++++ .+.|+++.++-.
T Consensus 10 ~A~~~~yav~Afn~~-n~e~~~avi~aAe~-~~~PvIl~~~~~ 50 (282)
T TIGR01859 10 KAKKEGYAVGAFNFN-NLEWTQAILEAAEE-ENSPVIIQVSEG 50 (282)
T ss_pred HHHHCCceEEEEEEC-CHHHHHHHHHHHHH-hCCCEEEEcCcc
Confidence 344556667777775 67789999999998 468999987543
No 419
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=21.38 E-value=1.1e+03 Score=25.79 Aligned_cols=59 Identities=15% Similarity=0.082 Sum_probs=32.6
Q ss_pred CcceEEecCCCcceeccCCeecCCCCh-HHHHHHHHHHHhcCCcEE-----eecCCCCHHHHHHHHHHhhh
Q psy17603 343 NIPLVVYPNSGERYDAVNARWIDRDLC-EPVDKYVTDWLDEGVALV-----GGCCRTYAEDTLHMKHRLDD 407 (591)
Q Consensus 343 ~~pl~~~pn~g~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~Gv~~V-----GgcCgtgP~~i~~l~~~l~~ 407 (591)
++||+++|+..-.+... -..|.+. .-+.+.. .=.|+|.+ +|.=...++...++++.+..
T Consensus 243 ~lpIhaHra~~ga~~~~---~~~Gis~~~~l~kl~---RLaGaD~~~~~~~~Gk~~~~~~~~~~~~~~~~~ 307 (391)
T cd08209 243 NVPIFAHPAFAGALYGS---PDYGIAASVLLGTLM---RLAGADAVLFPSPYGSVALSKEEALAIAEALRR 307 (391)
T ss_pred CcEEEecCCcccccccC---CCCCCcHHHHHHHHH---HHcCCCccccCCccCCcCCCHHHHHHHHHHHhC
Confidence 57899998865444221 1123322 1233333 34576654 66666677777888777644
No 420
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=21.22 E-value=1.2e+03 Score=26.03 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=24.5
Q ss_pred HHHHHHHcCCCEEEe-cccCCHHH----HHHHHHHHHhcCCCceEEEE
Q psy17603 198 RIQALVEAGADILAI-ETIPASKE----AQMLCRLLREWPHQKAWLSF 240 (591)
Q Consensus 198 ~i~~l~~aGvD~i~~-ET~~~~~E----a~aa~~a~~~~~~~pv~vSf 240 (591)
.++.++++|+++|-+ |--.+..| ++.+.++.+++ +.+++|.=
T Consensus 222 ~ve~aL~aGv~~VQLReK~ls~~el~~la~~l~~l~~~~-gv~LiIND 268 (437)
T PRK12290 222 WIERLLPLGINTVQLRIKDPQQADLEQQIIRAIALGREY-NAQVFIND 268 (437)
T ss_pred HHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHh-CCEEEEEC
Confidence 477889999998765 22223233 34444444443 67777743
No 421
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=21.13 E-value=71 Score=33.44 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=21.0
Q ss_pred cCHHHHHHHHHHHHHHhcceeecc
Q psy17603 36 TAKDAVVQTHRDFIKAGADIVMTN 59 (591)
Q Consensus 36 ~~Pe~v~~vH~~yl~AGAdiI~Tn 59 (591)
+...+|.+.+..|-+||||+|.|.
T Consensus 295 de~~~vlEsL~~~kRAGAd~IiTY 318 (330)
T COG0113 295 DEEKVVLESLTSIKRAGADLIITY 318 (330)
T ss_pred chHHHHHHHHHHHHhcCCCEEEee
Confidence 456799999999999999999873
No 422
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=21.11 E-value=2.4e+02 Score=29.95 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=37.5
Q ss_pred cCCcEEEeecCCcHHHHHHHHhcc------ccc--CCCCCCCCCcHHHHHHHhhhcCCCCeeEEEEcCCChhhHHHHHH
Q psy17603 483 EGVALVGGCCRTYAEDTLHMKHRL------DDW--DDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIE 553 (591)
Q Consensus 483 ~G~~~vgGCcgttp~~i~~l~~~~------~~~--d~~~l~dG~~l~~~~~~~~~~~~~~~~avGiNC~~p~~v~~~i~ 553 (591)
.|. +++.+.|++++........+ +.. |..+ .++..+.+.++.++. ..+++.-+.-||..++.+..+++
T Consensus 84 ~~l-~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~-gh~~~~~e~I~~ir~-~~p~~~vi~g~V~t~e~a~~l~~ 159 (326)
T PRK05458 84 QGL-IASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAH-GHSDSVINMIQHIKK-HLPETFVIAGNVGTPEAVRELEN 159 (326)
T ss_pred ccc-EEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCC-CchHHHHHHHHHHHh-hCCCCeEEEEecCCHHHHHHHHH
Confidence 345 67777787776444333222 222 3333 455666677777663 22334555557777777766654
No 423
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=21.03 E-value=1.2e+03 Score=27.84 Aligned_cols=80 Identities=18% Similarity=0.123 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecc-----cCCHHHHHHHHHHHHhc----CCCceEEEEEecCCCcccCCCCHHHHH
Q psy17603 188 EATMAEWHRPRIQALVEAGADILAIET-----IPASKEAQMLCRLLREW----PHQKAWLSFSCKDDKHISNGESFTQVA 258 (591)
Q Consensus 188 ~e~l~~~h~~~i~~l~~aGvD~i~~ET-----~~~~~Ea~aa~~a~~~~----~~~pv~vSf~~~~~g~l~~G~~~~~~~ 258 (591)
.+.+...|.+.++.|.++||++|=+.= =....+..++.++.+.. ++.++++...+++-+ .+..
T Consensus 181 l~~L~~~y~~~l~~L~~~Gv~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~TyFg~~~--------~~~~ 252 (766)
T PLN02475 181 LDKILPVYKEVIAELKAAGASWIQFDEPALVMDLESHKLQAFKTAYAELESTLSGLNVLVETYFADVP--------AEAY 252 (766)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCchhhcCCCHHHHHHHHHHHHHHHhccCCCeEEEEccCCCCC--------HHHH
Confidence 577888999999999999999874431 11223444444555432 345677666554311 1234
Q ss_pred HHHHhhCCCC-eEEEEecCCC
Q psy17603 259 RTCYNMNPDQ-LIAVGVNCVR 278 (591)
Q Consensus 259 ~~~~~~~~~~-~~aiGvNC~~ 278 (591)
..+. ... ++++|+.++.
T Consensus 253 ~~l~---~lp~Vd~l~lD~v~ 270 (766)
T PLN02475 253 KTLT---SLKGVTAFGFDLVR 270 (766)
T ss_pred HHHH---cCCCCCEEEEEecC
Confidence 4442 234 8999999865
No 424
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=20.55 E-value=7.3e+02 Score=24.67 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=25.7
Q ss_pred HHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEEE
Q psy17603 199 IQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSF 240 (591)
Q Consensus 199 i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vSf 240 (591)
++.+.++|+|++.+=.-......+.+++.+++. ++.+.|++
T Consensus 81 i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~-G~~~gval 121 (228)
T PTZ00170 81 VDDFAKAGASQFTFHIEATEDDPKAVARKIREA-GMKVGVAI 121 (228)
T ss_pred HHHHHHcCCCEEEEeccCCchHHHHHHHHHHHC-CCeEEEEE
Confidence 346778999997653322222256677888874 66666655
No 425
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=20.23 E-value=3.3e+02 Score=26.41 Aligned_cols=71 Identities=11% Similarity=0.117 Sum_probs=46.0
Q ss_pred CcEEEeecCCcHH----HHHHHHhcccccCCCCCCCCCcHHHHHHHhhhcCCCCeeEEEEcC---CChhhHHHHHHHhhh
Q psy17603 485 VALVGGCCRTYAE----DTLHMKHRLDDWDDKHISNGESFTQVARTCYNMNPDQLIAVGVNC---VRPLMVSPLIEQLKT 557 (591)
Q Consensus 485 ~~~vgGCcgttp~----~i~~l~~~~~~~d~~~l~dG~~l~~~~~~~~~~~~~~~~avGiNC---~~p~~v~~~i~~l~~ 557 (591)
-++|.||.+--.= .|-+..=...+|+--+|=...|.+++++.+. ..+++.||+.| .....+.++++.++.
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~---~~~pd~v~lS~~~~~~~~~~~~~i~~l~~ 161 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVK---KEKPLMLTGSALMTTTMYGQKDINDKLKE 161 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH---HcCCCEEEEccccccCHHHHHHHHHHHHH
Confidence 4677777764221 1111111225676666778899999999986 55788999999 444566677777776
Q ss_pred c
Q psy17603 558 E 558 (591)
Q Consensus 558 ~ 558 (591)
.
T Consensus 162 ~ 162 (197)
T TIGR02370 162 E 162 (197)
T ss_pred c
Confidence 5
No 426
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.22 E-value=4.1e+02 Score=25.62 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=18.7
Q ss_pred cCHHHHHHHHHHHHHHhcceee
Q psy17603 36 TAKDAVVQTHRDFIKAGADIVM 57 (591)
Q Consensus 36 ~~Pe~v~~vH~~yl~AGAdiI~ 57 (591)
.+++...++-+.-+++|..+|+
T Consensus 21 ~~~~~~~~~~~~~~~~Gv~~vq 42 (187)
T PRK07455 21 PDLELGLQMAEAVAAGGMRLIE 42 (187)
T ss_pred CCHHHHHHHHHHHHHCCCCEEE
Confidence 5778888888999999999876
No 427
>PRK08999 hypothetical protein; Provisional
Probab=20.07 E-value=9.6e+02 Score=24.66 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCCCEEEecc-cCCHHHHHHHHHHHHhc---CCCceEEEE
Q psy17603 195 HRPRIQALVEAGADILAIET-IPASKEAQMLCRLLREW---PHQKAWLSF 240 (591)
Q Consensus 195 h~~~i~~l~~aGvD~i~~ET-~~~~~Ea~aa~~a~~~~---~~~pv~vSf 240 (591)
+.++++.++++|+++|.+=. --+..|....++.+++. .+.+++|.-
T Consensus 146 ~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~~~~l~~~~~~~~~~liind 195 (312)
T PRK08999 146 FLARLERALAAGIRLIQLRAPQLPPAAYRALARAALGLCRRAGAQLLLNG 195 (312)
T ss_pred HHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 45567677899999987533 22333433333333321 256777653
Done!