Your job contains 1 sequence.
>psy17603
MANVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNS
YQASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGP
YGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRG
DYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSF
SCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYP
NSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVN
ARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWVSGLSTYVGDII
DGHPLWSSYFLATAKDAVVQTHRDFIKGSQTNDFLRDYNSPNLWIDRDLCEPVDKYVTDW
LDEGVALVGGCCRTYAEDTLHMKHRLDDWDDKHISNGESFTQVARTCYNMNPDQLIAVGV
NCVRPLMVSPLIEQLKTENIPLVVYPNSGERYDFHLADEKNNCVKSDVTHL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy17603
(591 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0032726 - symbol:CG10621 species:7227 "Drosophila ... 355 9.3e-53 3
ZFIN|ZDB-GENE-030131-9545 - symbol:zgc:172121 "zgc:172121... 406 8.2e-45 3
FB|FBgn0032727 - symbol:CG10623 species:7227 "Drosophila ... 335 3.1e-43 3
UNIPROTKB|Q4VNK0 - symbol:SMT "Selenocysteine Se-methyltr... 306 6.8e-40 2
TAIR|locus:2094419 - symbol:HMT3 "homocysteine S-methyltr... 304 3.0e-39 2
TAIR|locus:2077234 - symbol:HMT2 "homocysteine methyltran... 298 6.7e-39 2
TAIR|locus:2092120 - symbol:HMT-1 species:3702 "Arabidops... 312 4.2e-37 2
UNIPROTKB|A4ZGQ8 - symbol:HMT1 "Homocysteine S-methyltran... 304 3.3e-36 2
UNIPROTKB|Q47690 - symbol:mmuM species:83333 "Escherichia... 354 1.2e-34 3
CGD|CAL0004923 - symbol:SAM4 species:5476 "Candida albica... 246 2.3e-20 2
ASPGD|ASPL0000037651 - symbol:AN3378 species:162425 "Emer... 193 4.2e-18 2
SGD|S000003985 - symbol:MHT1 "S-methylmethionine-homocyst... 148 1.1e-14 2
WB|WBGene00020491 - symbol:T13G4.4 species:6239 "Caenorha... 175 3.6e-14 2
TIGR_CMR|SPO_3398 - symbol:SPO_3398 "homocysteine S-methy... 115 1.9e-13 3
SGD|S000006194 - symbol:SAM4 "S-adenosylmethionine-homocy... 127 6.6e-13 2
POMBASE|SPAC57A7.07c - symbol:SPAC57A7.07c "homocysteine ... 137 1.1e-10 3
TIGR_CMR|GSU_2974 - symbol:GSU_2974 "methylenetetrahydrof... 105 6.7e-09 3
UNIPROTKB|Q9KUW9 - symbol:metH "Methionine synthase" spec... 95 4.1e-08 4
TIGR_CMR|VC_0390 - symbol:VC_0390 "5-methyltetrahydrofola... 95 4.1e-08 4
SGD|S000004940 - symbol:YMR321C "Putative protein of unkn... 118 3.0e-06 1
TIGR_CMR|SPO_1884 - symbol:SPO_1884 "homocysteine S-methy... 96 0.00031 2
UNIPROTKB|P13009 - symbol:metH species:83333 "Escherichia... 89 0.00083 3
TIGR_CMR|CPS_1101 - symbol:CPS_1101 "5-methyltetrahydrofo... 84 0.00089 3
>FB|FBgn0032726 [details] [associations]
symbol:CG10621 species:7227 "Drosophila melanogaster"
[GO:0016205 "selenocysteine methyltransferase activity"
evidence=ISS] [GO:0008898 "homocysteine S-methyltransferase
activity" evidence=IEA] InterPro:IPR003726 Pfam:PF02574
PROSITE:PS50970 EMBL:AE014134 GO:GO:0008898 Gene3D:3.20.20.330
SUPFAM:SSF82282 KO:K00547 OMA:ACETIPC GeneTree:ENSGT00510000049619
FlyBase:FBgn0032726 ChiTaRS:CG10621 EMBL:BT030804
RefSeq:NP_609920.1 UniGene:Dm.10781 SMR:Q9VJ32 IntAct:Q9VJ32
MINT:MINT-853631 EnsemblMetazoa:FBtr0081191 GeneID:35152
KEGG:dme:Dmel_CG10621 UCSC:CG10621-RA InParanoid:Q9VJ32
GenomeRNAi:35152 NextBio:792122 Uniprot:Q9VJ32
Length = 331
Score = 355 (130.0 bits), Expect = 5.8e-32, P = 5.8e-32
Identities = 77/191 (40%), Positives = 107/191 (56%)
Query: 160 LIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASK 219
LI S+GP+GA L DGSEY G Y + V + +WHR RI+A +EAG D LAIETIP
Sbjct: 116 LIIASIGPFGAHLHDGSEYTGSYADFVPAKEITDWHRVRIEACLEAGVDALAIETIPCQM 175
Query: 220 EAQMLCRLL-REWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNM----NP-DQLIAVG 273
EA+ L +L ++P K W++F CKD+ +++GE+F A +++ N D+ +A+G
Sbjct: 176 EAEALVEMLCDDYPDVKFWVAFQCKDENTLAHGETFADAANAIWDLLAERNAQDKCLAIG 235
Query: 274 VNCVRPLMVSSLIEQLKT-----ENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREW 328
VNCV P V+ L + L E IPLVVYPNSGE + + L + EW
Sbjct: 236 VNCVHPKFVTPLFKSLNGDREVGEQIPLVVYPNSGEVYDVVNGWQGREHCVPLANYVPEW 295
Query: 329 PNQKAWLSFSC 339
A + C
Sbjct: 296 AQLGAKVIGGC 306
Score = 346 (126.9 bits), Expect = 9.3e-53, Sum P(3) = 9.3e-53
Identities = 67/153 (43%), Positives = 101/153 (66%)
Query: 1 MANVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNS 60
+ V + DGGF +Q++ +VGD +DG PLWS+ F AT A++ TH DF++ GADI++TN+
Sbjct: 3 LTRVLVKDGGFGTQMTVHVGDSVDGDPLWSARFNATNPAAIISTHLDFLQNGADIILTNT 62
Query: 61 YQASIGGFMEFLDLDYDSSYQLIKSSV---DYVKEAIALEATHARIRSDDPARDILIAGS 117
YQ+S+ G+ME+L+LD + S +LIK++V KE E A++ S ++IA S
Sbjct: 63 YQSSVDGYMEYLELDEEQSIELIKNTVRLAHIAKERYLTECYQAQL-SVQEGYPLIIA-S 120
Query: 118 VGPYGASLRDGSEYRGDYVEHVSEATMAEWHRL 150
+GP+GA L DGSEY G Y + V + +WHR+
Sbjct: 121 IGPFGAHLHDGSEYTGSYADFVPAKEITDWHRV 153
Score = 203 (76.5 bits), Expect = 4.3e-50, Sum P(2) = 4.3e-50
Identities = 36/67 (53%), Positives = 43/67 (64%)
Query: 342 ENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHM 401
E IPLVVYPNSGE YD VN W R+ C P+ YV +W G ++GGCCRTYA D H+
Sbjct: 259 EQIPLVVYPNSGEVYDVVNG-WQGREHCVPLANYVPEWAQLGAKVIGGCCRTYARDIRHI 317
Query: 402 KHRLDDW 408
+ DW
Sbjct: 318 GEAIRDW 324
Score = 145 (56.1 bits), Expect = 5.3e-44, Sum P(2) = 5.3e-44
Identities = 38/101 (37%), Positives = 54/101 (53%)
Query: 483 EGVALVGGCCRTYAEDTLHMKHRLDDWDDKHISNGESFTQVARTCYNM----NP-DQLIA 537
E ALV C Y + + + D + +++GE+F A +++ N D+ +A
Sbjct: 176 EAEALVEMLCDDYPDVKFWVAFQCKD--ENTLAHGETFADAANAIWDLLAERNAQDKCLA 233
Query: 538 VGVNCVRPLMVSPLIEQLKT-----ENIPLVVYPNSGERYD 573
+GVNCV P V+PL + L E IPLVVYPNSGE YD
Sbjct: 234 IGVNCVHPKFVTPLFKSLNGDREVGEQIPLVVYPNSGEVYD 274
Score = 136 (52.9 bits), Expect = 9.3e-53, Sum P(3) = 9.3e-53
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 458 YNSPNLWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWD 510
Y+ N W R+ C P+ YV +W G ++GGCCRTYA D H+ + DW+
Sbjct: 273 YDVVNGWQGREHCVPLANYVPEWAQLGAKVIGGCCRTYARDIRHIGEAIRDWN 325
Score = 109 (43.4 bits), Expect = 9.3e-53, Sum P(3) = 9.3e-53
Identities = 28/64 (43%), Positives = 37/64 (57%)
Query: 302 SGEHILAIETIPASKEAQMLCRLL-REWPNQKAWLSFSCKTENIPLVVYPNSGERY-DAV 359
+G LAIETIP EA+ L +L ++P+ K W++F CK EN L GE + DA
Sbjct: 161 AGVDALAIETIPCQMEAEALVEMLCDDYPDVKFWVAFQCKDENT-LA----HGETFADAA 215
Query: 360 NARW 363
NA W
Sbjct: 216 NAIW 219
Score = 102 (41.0 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 412 LSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKGSQTNDFLRDYNS 460
++ +VGD +DG PLWS+ F AT A++ TH DF++ Y S
Sbjct: 17 MTVHVGDSVDGDPLWSARFNATNPAAIISTHLDFLQNGADIILTNTYQS 65
>ZFIN|ZDB-GENE-030131-9545 [details] [associations]
symbol:zgc:172121 "zgc:172121" species:7955 "Danio
rerio" [GO:0008898 "homocysteine S-methyltransferase activity"
evidence=IEA] InterPro:IPR003726 Pfam:PF02574 PROSITE:PS50970
ZFIN:ZDB-GENE-030131-9545 GO:GO:0008898 Gene3D:3.20.20.330
SUPFAM:SSF82282 GeneTree:ENSGT00510000049619 EMBL:AL928701
IPI:IPI00934771 Ensembl:ENSDART00000043496 Bgee:F1RAY3
Uniprot:F1RAY3
Length = 311
Score = 406 (148.0 bits), Expect = 3.2e-42, Sum P(2) = 3.2e-42
Identities = 89/207 (42%), Positives = 128/207 (61%)
Query: 139 VSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPR 198
+++ T++E+ R+ L+AGSVGPYG+ L DGSEY G Y + ++ + +WHRP+
Sbjct: 93 LAKETVSEFISQSPMSDRREPLVAGSVGPYGSFLHDGSEYTGAYEDKMTVEELKDWHRPQ 152
Query: 199 IQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQ-V 257
IQ LV+AGAD++A+ETIP KEA+ L +L+E+P KAWLSFSCKD+ IS+G F++ V
Sbjct: 153 IQCLVKAGADLVAMETIPGLKEAEALVEVLKEFPETKAWLSFSCKDNNSISSGRRFSEAV 212
Query: 258 ARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTE---NIPLVVYPNSGEHILAIETIPA 314
C + QL+AVGVNC L+V L+E K+ ++ VVYPNSGE + T
Sbjct: 213 EMACRST---QLVAVGVNCCPALLVKPLLESAKSHKRADLSWVVYPNSGEG-WDVTTGWK 268
Query: 315 SKEAQMLCRLLREWPNQKA-WLSFSCK 340
++ L EW Q A W+ C+
Sbjct: 269 TEMRTSFANLSLEWKAQGALWIGGCCR 295
Score = 263 (97.6 bits), Expect = 8.2e-45, Sum P(3) = 8.2e-45
Identities = 53/144 (36%), Positives = 88/144 (61%)
Query: 6 LIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASI 65
++DGG +++L G + G PLWS+ L T A+ H ++++G+D++ T +YQASI
Sbjct: 11 ILDGGLATELEAS-GFQLQGDPLWSARVLHTDSQAIKDVHYRYLQSGSDVITTATYQASI 69
Query: 66 GGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASL 125
GF+++L + + + ++ S+V KE ++ E SD R+ L+AGSVGPYG+ L
Sbjct: 70 EGFVKYLGVQPEEAQHMMMSAVQLAKETVS-EFISQSPMSD--RREPLVAGSVGPYGSFL 126
Query: 126 RDGSEYRGDYVEHVSEATMAEWHR 149
DGSEY G Y + ++ + +WHR
Sbjct: 127 HDGSEYTGAYEDKMTVEELKDWHR 150
Score = 134 (52.2 bits), Expect = 8.2e-45, Sum P(3) = 8.2e-45
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 286 IEQLKTENIPLV-VYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTEN 343
+E+LK + P + +G ++A+ETIP KEA+ L +L+E+P KAWLSFSCK N
Sbjct: 142 VEELKDWHRPQIQCLVKAGADLVAMETIPGLKEAEALVEVLKEFPETKAWLSFSCKDNN 200
Score = 126 (49.4 bits), Expect = 8.2e-45, Sum P(3) = 8.2e-45
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 510 DDKHISNGESFTQ-VARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQLKTE---NIPLVVY 565
D+ IS+G F++ V C + QL+AVGVNC L+V PL+E K+ ++ VVY
Sbjct: 198 DNNSISSGRRFSEAVEMACRST---QLVAVGVNCCPALLVKPLLESAKSHKRADLSWVVY 254
Query: 566 PNSGERYD 573
PNSGE +D
Sbjct: 255 PNSGEGWD 262
Score = 97 (39.2 bits), Expect = 8.6e-42, Sum P(3) = 8.6e-42
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 338 SCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAED 397
S K ++ VVYPNSGE +D V W ++ +W +G +GGCCR D
Sbjct: 243 SHKRADLSWVVYPNSGEGWD-VTTGW-KTEMRTSFANLSLEWKAQGALWIGGCCRVRPAD 300
Query: 398 TLHMK 402
+K
Sbjct: 301 ITELK 305
Score = 59 (25.8 bits), Expect = 3.2e-42, Sum P(2) = 3.2e-42
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 479 DWLDEGVALVGGCCRTYAEDTLHMK 503
+W +G +GGCCR D +K
Sbjct: 281 EWKAQGALWIGGCCRVRPADITELK 305
Score = 54 (24.1 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 411 GLSTYV---GDIIDGHPLWSSYFLATAKDAVVQTHRDFIK-GS 449
GL+T + G + G PLWS+ L T A+ H +++ GS
Sbjct: 15 GLATELEASGFQLQGDPLWSARVLHTDSQAIKDVHYRYLQSGS 57
>FB|FBgn0032727 [details] [associations]
symbol:CG10623 species:7227 "Drosophila melanogaster"
[GO:0016205 "selenocysteine methyltransferase activity"
evidence=ISS] [GO:0008898 "homocysteine S-methyltransferase
activity" evidence=IEA] InterPro:IPR003726 Pfam:PF02574
PROSITE:PS50970 EMBL:AE014134 GO:GO:0008898 Gene3D:3.20.20.330
SUPFAM:SSF82282 HSSP:Q93088 OMA:YQSSVEG
GeneTree:ENSGT00510000049619 OrthoDB:EOG45MKN1 EMBL:AY118872
EMBL:AM294641 EMBL:AM294643 EMBL:AM294645 EMBL:AM294646
EMBL:FM245789 EMBL:FM245791 RefSeq:NP_609921.1 UniGene:Dm.13519
MINT:MINT-923852 EnsemblMetazoa:FBtr0081190 GeneID:35153
KEGG:dme:Dmel_CG10623 UCSC:CG10623-RA FlyBase:FBgn0032727
InParanoid:Q9VJ31 GenomeRNAi:35153 NextBio:792127 Uniprot:Q9VJ31
Length = 331
Score = 335 (123.0 bits), Expect = 8.3e-38, Sum P(2) = 8.3e-38
Identities = 69/179 (38%), Positives = 108/179 (60%)
Query: 160 LIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASK 219
LI GS+GPYGA L DGSEY G+Y + +S+ + WH+ RI+ + AG D LA+ET+P
Sbjct: 121 LIMGSIGPYGAYLHDGSEYTGNYADKMSKEELRAWHKTRIEICLAAGVDGLALETLPCLM 180
Query: 220 EAQMLCRL-LREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNM-----NPDQLIAVG 273
EA+ + L L +P K W+S C D+KH+++GE+F + A + + + ++L+ +G
Sbjct: 181 EAEAVTELVLDNFPDAKFWVSLQCMDEKHMASGENFAEAALSLWRLVQSRKAENRLLGIG 240
Query: 274 VNCVRPLMVSSLIEQLK----TENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREW 328
+NCV PL V+ L+ L ++ IPLVVY N GE I +E + + + + + EW
Sbjct: 241 LNCVNPLFVTPLLSSLTKVAGSDRIPLVVYSNRGE-IYDVEQGDWTGTGEEVVKFVPEW 298
Score = 329 (120.9 bits), Expect = 3.1e-43, Sum P(3) = 3.1e-43
Identities = 65/141 (46%), Positives = 95/141 (67%)
Query: 9 GGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGF 68
GGFSSQL+ V + +DG PLW S F AT +AV+QTH DF++ GADI++TN+YQ+S+ GF
Sbjct: 19 GGFSSQLAKNVTEKVDGDPLWGSRFDATNPEAVIQTHLDFLRNGADIILTNTYQSSVEGF 78
Query: 69 MEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRDG 128
+++L + + +LI+ SV K+A E + I S+ + LI GS+GPYGA L DG
Sbjct: 79 VKYLGVTRERGVELIQKSVQLAKQA--KEQYLSEIGSEAESALPLIMGSIGPYGAYLHDG 136
Query: 129 SEYRGDYVEHVSEATMAEWHR 149
SEY G+Y + +S+ + WH+
Sbjct: 137 SEYTGNYADKMSKEELRAWHK 157
Score = 148 (57.2 bits), Expect = 2.3e-42, Sum P(2) = 2.3e-42
Identities = 29/66 (43%), Positives = 38/66 (57%)
Query: 341 TENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLH 400
++ IPLVVY N GE YD W E V K+V +W+ GV +VGGCCR Y D L
Sbjct: 262 SDRIPLVVYSNRGEIYDVEQGDWTGTG--EEVVKFVPEWIQLGVRIVGGCCRVYPTDVLA 319
Query: 401 MKHRLD 406
++ +D
Sbjct: 320 IRKYVD 325
Score = 145 (56.1 bits), Expect = 4.7e-42, Sum P(2) = 4.7e-42
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 510 DDKHISNGESFTQVARTCYNM-----NPDQLIAVGVNCVRPLMVSPLIEQLK----TENI 560
D+KH+++GE+F + A + + + ++L+ +G+NCV PL V+PL+ L ++ I
Sbjct: 206 DEKHMASGENFAEAALSLWRLVQSRKAENRLLGIGLNCVNPLFVTPLLSSLTKVAGSDRI 265
Query: 561 PLVVYPNSGERYDFHLAD 578
PLVVY N GE YD D
Sbjct: 266 PLVVYSNRGEIYDVEQGD 283
Score = 98 (39.6 bits), Expect = 3.1e-43, Sum P(3) = 3.1e-43
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 471 EPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLD 507
E V K+V +W+ GV +VGGCCR Y D L ++ +D
Sbjct: 289 EEVVKFVPEWIQLGVRIVGGCCRVYPTDVLAIRKYVD 325
Score = 98 (39.6 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 397 DTLHMKHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKGSQTNDFLR 456
DT + + + S L+ V + +DG PLW S F AT +AV+QTH DF++
Sbjct: 10 DTKPILVKCGGFSSQLAKNVTEKVDGDPLWGSRFDATNPEAVIQTHLDFLRNGADIILTN 69
Query: 457 DYNS 460
Y S
Sbjct: 70 TYQS 73
Score = 75 (31.5 bits), Expect = 3.1e-43, Sum P(3) = 3.1e-43
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 307 LAIETIPASKEAQMLCRL-LREWPNQKAWLSFSCKTENIPLVVYPNSGERY-DAVNARW 363
LA+ET+P EA+ + L L +P+ K W+S C E + SGE + +A + W
Sbjct: 171 LALETLPCLMEAEAVTELVLDNFPDAKFWVSLQCMDEK-----HMASGENFAEAALSLW 224
>UNIPROTKB|Q4VNK0 [details] [associations]
symbol:SMT "Selenocysteine Se-methyltransferase"
species:36774 "Brassica oleracea var. italica" [GO:0010269
"response to selenium ion" evidence=IDA] [GO:0016205
"selenocysteine methyltransferase activity" evidence=IDA]
[GO:0032259 "methylation" evidence=IDA] InterPro:IPR003726
Pfam:PF02574 PROSITE:PS50970 GO:GO:0046872 GO:GO:0010269
GO:GO:0008898 Gene3D:3.20.20.330 SUPFAM:SSF82282 EMBL:AY817737
BioCyc:MetaCyc:MONOMER-15249 GO:GO:0016205 Uniprot:Q4VNK0
Length = 346
Score = 306 (112.8 bits), Expect = 6.8e-40, Sum P(2) = 6.8e-40
Identities = 73/193 (37%), Positives = 106/193 (54%)
Query: 122 GASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPA-----RDILIAGSVGPYGASLRDGS 176
G S+ VE EA + + DD R IL+A SVG YGA L DGS
Sbjct: 90 GYSIEKSESLLRKSVEIACEARSTYYDKCKDDDDKKILKKRPILVAASVGSYGAFLADGS 149
Query: 177 EYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQ-K 235
EY G Y + ++ T+ ++HR R+Q L E+GADI+A ETIP EAQ LL E +
Sbjct: 150 EYSGIYGDLITLETLKDFHRRRVQVLAESGADIIAFETIPNKLEAQAFAELLDEGVAKIP 209
Query: 236 AWLSFSCKDDKHISNGESFTQ---VARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQL-KT 291
W SF+ KD ++ +G+S + +A C ++++AVG+NC P + L+ ++ K
Sbjct: 210 GWFSFNSKDGVNVVSGDSIKECIAIAEAC-----EKVVAVGINCTPPRFIEGLVLEIAKV 264
Query: 292 ENIPLVVYPNSGE 304
+ P++VYPNSGE
Sbjct: 265 TSKPILVYPNSGE 277
Score = 238 (88.8 bits), Expect = 5.7e-34, Sum P(3) = 5.7e-34
Identities = 57/149 (38%), Positives = 87/149 (58%)
Query: 6 LIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASI 65
+IDGG +++L + D+ D PLWS+ L T+ + H D+++AGADI+ + SYQA+I
Sbjct: 26 IIDGGLATELERHGADLND--PLWSAKCLLTSPHLIHTVHLDYLEAGADIISSASYQATI 83
Query: 66 GGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPA-----RDILIAGSVGP 120
GF E + S L++ SV+ EA + + + + DD R IL+A SVG
Sbjct: 84 QGF-EAKGYSIEKSESLLRKSVEIACEARS--TYYDKCKDDDDKKILKKRPILVAASVGS 140
Query: 121 YGASLRDGSEYRGDYVEHVSEATMAEWHR 149
YGA L DGSEY G Y + ++ T+ ++HR
Sbjct: 141 YGAFLADGSEYSGIYGDLITLETLKDFHR 169
Score = 149 (57.5 bits), Expect = 6.8e-40, Sum P(2) = 6.8e-40
Identities = 29/67 (43%), Positives = 39/67 (58%)
Query: 340 KTENIPLVVYPNSGERYDAVNARWIDRDLCEPVD--KYVTDWLDEGVALVGGCCRTYAED 397
K + P++VYPNSGERYD W++ D YV W+D GV+L+GGCCRT
Sbjct: 263 KVTSKPILVYPNSGERYDPERKEWVENTGVGNEDFVSYVEKWMDAGVSLLGGCCRT-TPT 321
Query: 398 TLHMKHR 404
T+ H+
Sbjct: 322 TIRAIHK 328
Score = 116 (45.9 bits), Expect = 1.5e-30, Sum P(3) = 1.5e-30
Identities = 24/68 (35%), Positives = 42/68 (61%)
Query: 510 DDKHISNGESFTQ---VARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQL-KTENIPLVVY 565
D ++ +G+S + +A C ++++AVG+NC P + L+ ++ K + P++VY
Sbjct: 218 DGVNVVSGDSIKECIAIAEAC-----EKVVAVGINCTPPRFIEGLVLEIAKVTSKPILVY 272
Query: 566 PNSGERYD 573
PNSGERYD
Sbjct: 273 PNSGERYD 280
Score = 85 (35.0 bits), Expect = 3.5e-33, Sum P(2) = 3.5e-33
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 476 YVTDWLDEGVALVGGCCRTYAEDTLHMKHR 505
YV W+D GV+L+GGCCRT T+ H+
Sbjct: 300 YVEKWMDAGVSLLGGCCRT-TPTTIRAIHK 328
Score = 72 (30.4 bits), Expect = 5.7e-34, Sum P(3) = 5.7e-34
Identities = 19/44 (43%), Positives = 22/44 (50%)
Query: 298 VYPNSGEHILAIETIPASKEAQMLCRLLREWPNQ-KAWLSFSCK 340
V SG I+A ETIP EAQ LL E + W SF+ K
Sbjct: 174 VLAESGADIIAFETIPNKLEAQAFAELLDEGVAKIPGWFSFNSK 217
>TAIR|locus:2094419 [details] [associations]
symbol:HMT3 "homocysteine S-methyltransferase 3"
species:3702 "Arabidopsis thaliana" [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008898 "homocysteine S-methyltransferase
activity" evidence=IEA;ISS] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR003726 Pfam:PF02574 PROSITE:PS50970
GO:GO:0005886 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0009086 GO:GO:0008898 Gene3D:3.20.20.330 SUPFAM:SSF82282
EMBL:AB022223 eggNOG:COG2040 HOGENOM:HOG000265278 KO:K00547
ProtClustDB:PLN02489 EMBL:AF297394 EMBL:AK118021 EMBL:BT005318
EMBL:AY087554 IPI:IPI00516296 RefSeq:NP_566715.1 UniGene:At.6305
ProteinModelPortal:Q8LAX0 SMR:Q8LAX0 STRING:Q8LAX0 PaxDb:Q8LAX0
PRIDE:Q8LAX0 EnsemblPlants:AT3G22740.1 GeneID:821845
KEGG:ath:AT3G22740 TAIR:At3g22740 InParanoid:Q8LAX0 OMA:ACETIPC
PhylomeDB:Q8LAX0 Genevestigator:Q8LAX0 GermOnline:AT3G22740
Uniprot:Q8LAX0
Length = 347
Score = 304 (112.1 bits), Expect = 3.0e-39, Sum P(2) = 3.0e-39
Identities = 81/233 (34%), Positives = 120/233 (51%)
Query: 78 SSYQLIKSSVDYVKEA--IALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDY 135
S + + K +DY++ I + A++ A+ + SVG LR E +
Sbjct: 54 SPHLVTKVHLDYLESGANIIITASYQATIQGFVAKGL----SVGEAENLLRRSVEITYEA 109
Query: 136 VE-HVSEATMAEWHRLITDDPAR-DILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAE 193
E + T W +R IL+A SVG YGA L DGSEY G Y + VS+ T+ +
Sbjct: 110 REIFYNRCTKGSWDFAYAGKASRRPILVAASVGSYGAYLADGSEYSGIYGDSVSKETLKD 169
Query: 194 WHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQ-KAWLSFSCKDDKHISNGE 252
+HR R+Q L ++GAD++A ETIP EA+ LL E AW SF+ KD + G+
Sbjct: 170 FHRRRVQILAKSGADLIAFETIPNKLEAEAYADLLEEEDIDIPAWFSFTSKDGVSVPRGD 229
Query: 253 SFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKT-ENIPLVVYPNSGE 304
S + A+ + ++A+G+NC P + +LI L+ P+VVYPNSGE
Sbjct: 230 SVVECAKVADSCK--NVVAIGINCTAPRYIHALIISLRQMTRKPIVVYPNSGE 280
Score = 245 (91.3 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
Identities = 60/151 (39%), Positives = 89/151 (58%)
Query: 6 LIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASI 65
++DGGF+++L + DI D PLWS+ L T+ V + H D++++GA+I++T SYQA+I
Sbjct: 25 VVDGGFATELQRHGADIND--PLWSAKCLITSPHLVTKVHLDYLESGANIIITASYQATI 82
Query: 66 GGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPA-------RDILIAGSV 118
GF+ L + L++ SV+ EA + S D A R IL+A SV
Sbjct: 83 QGFVA-KGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYAGKASRRPILVAASV 141
Query: 119 GPYGASLRDGSEYRGDYVEHVSEATMAEWHR 149
G YGA L DGSEY G Y + VS+ T+ ++HR
Sbjct: 142 GSYGAYLADGSEYSGIYGDSVSKETLKDFHR 172
Score = 145 (56.1 bits), Expect = 3.0e-39, Sum P(2) = 3.0e-39
Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 345 PLVVYPNSGERYDAVNARWI--DRDLCEPVDKYVTDWLDEGVALVGGCCRT 393
P+VVYPNSGE YD +N +WI + + E YV+ W D G +L GGCCRT
Sbjct: 271 PIVVYPNSGEVYDGLNKKWIKSEGESEEDFVSYVSKWRDAGASLFGGCCRT 321
Score = 106 (42.4 bits), Expect = 1.7e-30, Sum P(3) = 1.7e-30
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 510 DDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQLKT-ENIPLVVYPNS 568
D + G+S + A+ + ++A+G+NC P + LI L+ P+VVYPNS
Sbjct: 221 DGVSVPRGDSVVECAKVADSCK--NVVAIGINCTAPRYIHALIISLRQMTRKPIVVYPNS 278
Query: 569 GERYD 573
GE YD
Sbjct: 279 GEVYD 283
Score = 75 (31.5 bits), Expect = 6.5e-32, Sum P(2) = 6.5e-32
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 476 YVTDWLDEGVALVGGCCRT 494
YV+ W D G +L GGCCRT
Sbjct: 303 YVSKWRDAGASLFGGCCRT 321
Score = 68 (29.0 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 298 VYPNSGEHILAIETIPASKEAQMLCRLLREWP-NQKAWLSFSCK 340
+ SG ++A ETIP EA+ LL E + AW SF+ K
Sbjct: 177 ILAKSGADLIAFETIPNKLEAEAYADLLEEEDIDIPAWFSFTSK 220
Score = 56 (24.8 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 412 LSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIK 447
L + DI D PLWS+ L T+ V + H D+++
Sbjct: 34 LQRHGADIND--PLWSAKCLITSPHLVTKVHLDYLE 67
>TAIR|locus:2077234 [details] [associations]
symbol:HMT2 "homocysteine methyltransferase 2"
species:3702 "Arabidopsis thaliana" [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008898 "homocysteine S-methyltransferase
activity" evidence=IEA;ISS;IDA] [GO:0009086 "methionine
biosynthetic process" evidence=RCA;IDA] [GO:0033528
"S-methylmethionine cycle" evidence=IMP] [GO:0000394 "RNA splicing,
via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0006260 "DNA replication" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0009616 "virus induced gene
silencing" evidence=RCA] [GO:0010050 "vegetative phase change"
evidence=RCA] [GO:0043687 "post-translational protein modification"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] InterPro:IPR003726 Pfam:PF02574
PROSITE:PS50970 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0009086 GO:GO:0008898 Gene3D:3.20.20.330
SUPFAM:SSF82282 EMBL:AL138648 eggNOG:COG2040 HOGENOM:HOG000265278
KO:K00547 ProtClustDB:PLN02489 EMBL:AF219223 EMBL:AF428402
EMBL:BT010165 IPI:IPI00534315 PIR:T48114 PIR:T51939
RefSeq:NP_191884.1 UniGene:At.21554 ProteinModelPortal:Q9M1W4
SMR:Q9M1W4 STRING:Q9M1W4 PaxDb:Q9M1W4 PRIDE:Q9M1W4 DNASU:825500
EnsemblPlants:AT3G63250.1 GeneID:825500 KEGG:ath:AT3G63250
TAIR:At3g63250 InParanoid:Q9M1W4 OMA:YQSSVEG PhylomeDB:Q9M1W4
Genevestigator:Q9M1W4 GO:GO:0033528 Uniprot:Q9M1W4
Length = 333
Score = 298 (110.0 bits), Expect = 6.7e-39, Sum P(2) = 6.7e-39
Identities = 62/150 (41%), Positives = 92/150 (61%)
Query: 157 RDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIP 216
R IL+A SVG YGA L DGSEY G Y + ++ + ++HR R+Q L E+GAD++A ETIP
Sbjct: 127 RPILVAASVGSYGAYLADGSEYSGIYGDSITLEKLKDFHRRRLQVLAESGADLIAFETIP 186
Query: 217 ASKEAQMLCRLLREWPHQ-KAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVN 275
EAQ LL E + W SF+ KD ++ +G+S + N ++++AVG+N
Sbjct: 187 NKIEAQAFADLLEEGDVKIPGWFSFNSKDGVNVVSGDSIKECISIAENC--EKVVAVGIN 244
Query: 276 CVRPLMVSSLIEQL-KTENIPLVVYPNSGE 304
C P + L+ ++ K + P++VYPNSGE
Sbjct: 245 CTPPRFIEGLVLEIEKVTSKPILVYPNSGE 274
Score = 228 (85.3 bits), Expect = 5.7e-33, Sum P(3) = 5.7e-33
Identities = 56/149 (37%), Positives = 82/149 (55%)
Query: 6 LIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASI 65
+IDGG +++ + D+ D PLWS+ L T+ + H D+++AGADI+ + SYQA+I
Sbjct: 21 VIDGGLATEFERHGADLND--PLWSAKCLVTSPHLIHTVHLDYLEAGADIISSASYQATI 78
Query: 66 GGFMEFLDLDYDSSYQLIKSSVDYVKEA--IALEATHARIRSDDPA---RDILIAGSVGP 120
GF E + S L+K SV+ EA + DD R IL+A SVG
Sbjct: 79 QGF-EAKGFSREESESLLKKSVEIATEARNSYYDKCGTSSSMDDKILKKRPILVAASVGS 137
Query: 121 YGASLRDGSEYRGDYVEHVSEATMAEWHR 149
YGA L DGSEY G Y + ++ + ++HR
Sbjct: 138 YGAYLADGSEYSGIYGDSITLEKLKDFHR 166
Score = 148 (57.2 bits), Expect = 6.7e-39, Sum P(2) = 6.7e-39
Identities = 29/67 (43%), Positives = 39/67 (58%)
Query: 340 KTENIPLVVYPNSGERYDAVNARWIDRDLCEPVD--KYVTDWLDEGVALVGGCCRTYAED 397
K + P++VYPNSGE YDA W++ D YV W+D GV+L+GGCCRT
Sbjct: 260 KVTSKPILVYPNSGESYDADRKEWVENTGVGDEDFVSYVEKWMDAGVSLLGGCCRT-TPT 318
Query: 398 TLHMKHR 404
T+ H+
Sbjct: 319 TIRAIHK 325
Score = 114 (45.2 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 510 DDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQL-KTENIPLVVYPNS 568
D ++ +G+S + N ++++AVG+NC P + L+ ++ K + P++VYPNS
Sbjct: 215 DGVNVVSGDSIKECISIAENC--EKVVAVGINCTPPRFIEGLVLEIEKVTSKPILVYPNS 272
Query: 569 GERYDFHLADEK 580
GE YD AD K
Sbjct: 273 GESYD---ADRK 281
Score = 85 (35.0 bits), Expect = 2.7e-32, Sum P(2) = 2.7e-32
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 476 YVTDWLDEGVALVGGCCRTYAEDTLHMKHR 505
YV W+D GV+L+GGCCRT T+ H+
Sbjct: 297 YVEKWMDAGVSLLGGCCRT-TPTTIRAIHK 325
Score = 74 (31.1 bits), Expect = 5.7e-33, Sum P(3) = 5.7e-33
Identities = 23/60 (38%), Positives = 29/60 (48%)
Query: 283 SSLIEQLKT-ENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQ-KAWLSFSCK 340
S +E+LK L V SG ++A ETIP EAQ LL E + W SF+ K
Sbjct: 155 SITLEKLKDFHRRRLQVLAESGADLIAFETIPNKIEAQAFADLLEEGDVKIPGWFSFNSK 214
>TAIR|locus:2092120 [details] [associations]
symbol:HMT-1 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008898 "homocysteine
S-methyltransferase activity" evidence=IEA;ISS;IDA] [GO:0009086
"methionine biosynthetic process" evidence=IDA] InterPro:IPR003726
Pfam:PF02574 PROSITE:PS50970 EMBL:CP002686
GenomeReviews:BA000014_GR EMBL:AB023041 GO:GO:0046872 GO:GO:0009086
GO:GO:0008898 Gene3D:3.20.20.330 SUPFAM:SSF82282 EMBL:AF219222
EMBL:AY065163 EMBL:AY081604 IPI:IPI00527423 PIR:T51941
RefSeq:NP_189219.1 UniGene:At.23868 ProteinModelPortal:Q9SDL7
SMR:Q9SDL7 IntAct:Q9SDL7 STRING:Q9SDL7 PRIDE:Q9SDL7
EnsemblPlants:AT3G25900.1 GeneID:822186 KEGG:ath:AT3G25900
TAIR:At3g25900 eggNOG:COG2040 HOGENOM:HOG000265278
InParanoid:Q9SDL7 KO:K00547 OMA:EGYMEYL PhylomeDB:Q9SDL7
ProtClustDB:PLN02489 Genevestigator:Q9SDL7 Uniprot:Q9SDL7
Length = 326
Score = 312 (114.9 bits), Expect = 4.2e-37, Sum P(2) = 4.2e-37
Identities = 86/250 (34%), Positives = 122/250 (48%)
Query: 66 GGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVG---P-- 120
GGF L++ + + S+V +K ++ H + DI++ S P
Sbjct: 25 GGFATQLEIHGAAINDPLWSAVSLIKNPELIKRVHMEYL--EAGADIVVTSSYQATIPGF 82
Query: 121 --YGASLRDGSEYRGDYVEHVSEATMAEWHRL--ITDDPARDILIAGSVGPYGASLRDGS 176
G S+ + VE EA W ++ ++ L+A S+G YGA L DGS
Sbjct: 83 LSRGLSIEESESLLQKSVELAVEARDRFWEKVSKVSGHSYNRALVAASIGSYGAYLADGS 142
Query: 177 EYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQ-K 235
EY G Y E+VS + ++HR R+Q LVEAG D+LA ETIP EAQ LL E Q
Sbjct: 143 EYSGHYGENVSLDKLKDFHRRRLQVLVEAGPDLLAFETIPNKLEAQACVELLEEEKVQIP 202
Query: 236 AWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQL-KTENI 294
AW+ F+ D + +GESF + N + AVG+NC P + +LI + K
Sbjct: 203 AWICFTSVDGEKAPSGESFEECLEPLNKSN--NIYAVGINCAPPQFIENLIRKFAKLTKK 260
Query: 295 PLVVYPNSGE 304
+VVYPNSGE
Sbjct: 261 AIVVYPNSGE 270
Score = 238 (88.8 bits), Expect = 4.9e-33, Sum P(3) = 4.9e-33
Identities = 56/144 (38%), Positives = 83/144 (57%)
Query: 6 LIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASI 65
++DGGF++QL + I D PLWS+ L + + + H ++++AGADIV+T+SYQA+I
Sbjct: 22 VVDGGFATQLEIHGAAIND--PLWSAVSLIKNPELIKRVHMEYLEAGADIVVTSSYQATI 79
Query: 66 GGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASL 125
GF+ L + S L++ SV+ EA S L+A S+G YGA L
Sbjct: 80 PGFLS-RGLSIEESESLLQKSVELAVEARDRFWEKVSKVSGHSYNRALVAASIGSYGAYL 138
Query: 126 RDGSEYRGDYVEHVSEATMAEWHR 149
DGSEY G Y E+VS + ++HR
Sbjct: 139 ADGSEYSGHYGENVSLDKLKDFHR 162
Score = 116 (45.9 bits), Expect = 4.2e-37, Sum P(2) = 4.2e-37
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 346 LVVYPNSGERYDAVNARWIDRDLC---EPVDKYVTDWLDEGVALVGGCCRT 393
+VVYPNSGE +D +W+ C + + + T W D G L+GGCCRT
Sbjct: 262 IVVYPNSGEVWDGKAKQWLPSQ-CFGDDEFEMFATKWRDLGAKLIGGCCRT 311
Score = 100 (40.3 bits), Expect = 2.2e-31, Sum P(3) = 2.2e-31
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 510 DDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQL-KTENIPLVVYPNS 568
D + +GESF + N + AVG+NC P + LI + K +VVYPNS
Sbjct: 211 DGEKAPSGESFEECLEPLNKSN--NIYAVGINCAPPQFIENLIRKFAKLTKKAIVVYPNS 268
Query: 569 GERYD 573
GE +D
Sbjct: 269 GEVWD 273
Score = 72 (30.4 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 474 DKYVTDWLDEGVALVGGCCRT 494
+ + T W D G L+GGCCRT
Sbjct: 291 EMFATKWRDLGAKLIGGCCRT 311
Score = 71 (30.1 bits), Expect = 4.9e-33, Sum P(3) = 4.9e-33
Identities = 22/52 (42%), Positives = 25/52 (48%)
Query: 296 LVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQ-KAWLSF-SCKTENIP 345
L V +G +LA ETIP EAQ LL E Q AW+ F S E P
Sbjct: 165 LQVLVEAGPDLLAFETIPNKLEAQACVELLEEEKVQIPAWICFTSVDGEKAP 216
>UNIPROTKB|A4ZGQ8 [details] [associations]
symbol:HMT1 "Homocysteine S-methyltransferase 1"
species:36774 "Brassica oleracea var. italica" [GO:0008898
"homocysteine S-methyltransferase activity" evidence=IDA]
[GO:0032259 "methylation" evidence=IDA] InterPro:IPR003726
Pfam:PF02574 PROSITE:PS50970 GO:GO:0046872 GO:GO:0008898
Gene3D:3.20.20.330 SUPFAM:SSF82282 EMBL:DQ679980
BioCyc:MetaCyc:MONOMER-15250 BRENDA:2.1.1.10 Uniprot:A4ZGQ8
Length = 326
Score = 304 (112.1 bits), Expect = 3.3e-36, Sum P(2) = 3.3e-36
Identities = 86/250 (34%), Positives = 124/250 (49%)
Query: 66 GGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVG---P-- 120
GGF L++ + + S+V +K+ ++ H + D+++ S P
Sbjct: 25 GGFATQLEIHGAAINDPLWSAVSLIKDPELIKRVHMEYL--EAGADVVVTSSYQATIPGF 82
Query: 121 --YGASLRDGSEYRGDYVEHVSEATMAEWHRLI-TDDPARD-ILIAGSVGPYGASLRDGS 176
G S+ + V+ EA W ++ T + + L+A S+G YGA L DGS
Sbjct: 83 LSRGLSMEESESLLQKSVKLAVEARDRFWDKVSKTSGHSYNRALVAASIGSYGAYLADGS 142
Query: 177 EYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQ-K 235
EY G Y E VS + ++HR RIQ LVEA D+LA ETIP EAQ LL E Q
Sbjct: 143 EYSGSYGEDVSLDKLKDFHRRRIQVLVEASPDLLAFETIPNKLEAQACVELLEEENVQIP 202
Query: 236 AWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQL-KTENI 294
AW+ F+ D ++ +GESF + T N + AVG+NC P + +LI + K
Sbjct: 203 AWICFTSVDGENAPSGESFQECLETLNKSN--NICAVGINCAPPQFMDNLIRKFSKLTQK 260
Query: 295 PLVVYPNSGE 304
+VVYPNSGE
Sbjct: 261 AIVVYPNSGE 270
Score = 235 (87.8 bits), Expect = 2.8e-30, Sum P(3) = 2.8e-30
Identities = 55/144 (38%), Positives = 81/144 (56%)
Query: 6 LIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASI 65
++DGGF++QL + I D PLWS+ L + + + H ++++AGAD+V+T+SYQA+I
Sbjct: 22 VVDGGFATQLEIHGAAIND--PLWSAVSLIKDPELIKRVHMEYLEAGADVVVTSSYQATI 79
Query: 66 GGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASL 125
GF+ L + S L++ SV EA S L+A S+G YGA L
Sbjct: 80 PGFLS-RGLSMEESESLLQKSVKLAVEARDRFWDKVSKTSGHSYNRALVAASIGSYGAYL 138
Query: 126 RDGSEYRGDYVEHVSEATMAEWHR 149
DGSEY G Y E VS + ++HR
Sbjct: 139 ADGSEYSGSYGEDVSLDKLKDFHR 162
Score = 116 (45.9 bits), Expect = 3.3e-36, Sum P(2) = 3.3e-36
Identities = 25/60 (41%), Positives = 33/60 (55%)
Query: 337 FSCKTENIPLVVYPNSGERYDAVNARWIDRDLC---EPVDKYVTDWLDEGVALVGGCCRT 393
FS T+ +VVYPNSGE +D +W+ C + + T W D G L+GGCCRT
Sbjct: 254 FSKLTQKA-IVVYPNSGEVWDGKAKKWLPSQ-CFGDAEFEMFATKWRDLGAKLIGGCCRT 311
Score = 106 (42.4 bits), Expect = 2.8e-30, Sum P(3) = 2.8e-30
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 510 DDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQL-KTENIPLVVYPNS 568
D ++ +GESF + T N + AVG+NC P + LI + K +VVYPNS
Sbjct: 211 DGENAPSGESFQECLETLNKSN--NICAVGINCAPPQFMDNLIRKFSKLTQKAIVVYPNS 268
Query: 569 GERYD 573
GE +D
Sbjct: 269 GEVWD 273
Score = 72 (30.4 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 474 DKYVTDWLDEGVALVGGCCRT 494
+ + T W D G L+GGCCRT
Sbjct: 291 EMFATKWRDLGAKLIGGCCRT 311
Score = 68 (29.0 bits), Expect = 2.8e-30, Sum P(3) = 2.8e-30
Identities = 20/42 (47%), Positives = 22/42 (52%)
Query: 306 ILAIETIPASKEAQMLCRLLREWPNQ-KAWLSF-SCKTENIP 345
+LA ETIP EAQ LL E Q AW+ F S EN P
Sbjct: 175 LLAFETIPNKLEAQACVELLEEENVQIPAWICFTSVDGENAP 216
>UNIPROTKB|Q47690 [details] [associations]
symbol:mmuM species:83333 "Escherichia coli K-12"
[GO:0006974 "response to DNA damage stimulus" evidence=IEP]
[GO:0032259 "methylation" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0008652 "cellular amino acid biosynthetic
process" evidence=IEA] [GO:0008168 "methyltransferase activity"
evidence=IEA] [GO:0008898 "homocysteine S-methyltransferase
activity" evidence=IEA] [GO:0009086 "methionine biosynthetic
process" evidence=IEA] InterPro:IPR003726 Pfam:PF02574
PROSITE:PS50970 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0006974 EMBL:U70214
GO:GO:0009086 GO:GO:0008898 Gene3D:3.20.20.330 SUPFAM:SSF82282
eggNOG:COG2040 HOGENOM:HOG000265278 KO:K00547 OMA:ACETIPC
PIR:E64751 RefSeq:NP_414795.1 RefSeq:YP_488556.1
ProteinModelPortal:Q47690 SMR:Q47690 IntAct:Q47690
EnsemblBacteria:EBESCT00000001025 EnsemblBacteria:EBESCT00000018250
GeneID:12930783 GeneID:946143 KEGG:ecj:Y75_p0252 KEGG:eco:b0261
PATRIC:32115641 EcoGene:EG13343 ProtClustDB:PRK09485
BioCyc:EcoCyc:MMUM-MONOMER BioCyc:ECOL316407:JW0253-MONOMER
BioCyc:MetaCyc:MMUM-MONOMER Genevestigator:Q47690 Uniprot:Q47690
Length = 310
Score = 354 (129.7 bits), Expect = 7.5e-32, P = 7.5e-32
Identities = 78/193 (40%), Positives = 111/193 (57%)
Query: 151 ITDDP-ARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADI 209
+ ++P A +L+AGSVGPYGA L DGSEYRGDY H S +HRPR++AL++AGAD+
Sbjct: 107 LAENPQAGTLLVAGSVGPYGAYLADGSEYRGDY--HCSVEAFQAFHRPRVEALLDAGADL 164
Query: 210 LAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQL 269
LA ET+P E + L LL +P +AW SF+ +D +H+S+G V P Q+
Sbjct: 165 LACETLPNFSEIEALAELLTAYPRARAWFSFTLRDSEHLSDGTPLRDVVALLAGY-P-QV 222
Query: 270 IAVGVNCVRPLMVSSLIEQLKTENI-PLVVYPNSGEHILAIETI--PASKEAQMLCRLLR 326
+A+G+NC+ ++ ++ L + PLVVYPNSGEH A+ + L L
Sbjct: 223 VALGINCIALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWHHHGEHCAQLADYLP 282
Query: 327 EWPNQKAWLSFSC 339
+W A L C
Sbjct: 283 QWQAAGARLIGGC 295
Score = 222 (83.2 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 56/147 (38%), Positives = 80/147 (54%)
Query: 3 NVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQ 62
++ L+DG +++L ++ D LWS+ L + + + H D+ +AGA +T SYQ
Sbjct: 15 DILLLDGAMATELEARGCNLADS--LWSAKVLVENPELIREVHLDYYRAGAQCAITASYQ 72
Query: 63 ASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYG 122
A+ GF LD S LI SV+ +A +A A + + A +L+AGSVGPYG
Sbjct: 73 ATPAGFAA-RGLDEAQSKALIGKSVE-----LARKAREAYLAENPQAGTLLVAGSVGPYG 126
Query: 123 ASLRDGSEYRGDYVEHVSEATMAEWHR 149
A L DGSEYRGDY H S +HR
Sbjct: 127 AYLADGSEYRGDY--HCSVEAFQAFHR 151
Score = 151 (58.2 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 29/62 (46%), Positives = 36/62 (58%)
Query: 344 IPLVVYPNSGERYDAVNARWIDR-DLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMK 402
+PLVVYPNSGE YDAV+ W + C + Y+ W G L+GGCCRT D +K
Sbjct: 248 LPLVVYPNSGEHYDAVSKTWHHHGEHCAQLADYLPQWQAAGARLIGGCCRTTPADIAALK 307
Query: 403 HR 404
R
Sbjct: 308 AR 309
Score = 106 (42.4 bits), Expect = 5.5e-30, Sum P(3) = 5.5e-30
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 510 DDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQLKTENI-PLVVYPNS 568
D +H+S+G V P Q++A+G+NC+ + ++ L + PLVVYPNS
Sbjct: 199 DSEHLSDGTPLRDVVALLAGY-P-QVVALGINCIALENTTAALQHLHGLTVLPLVVYPNS 256
Query: 569 GERYD 573
GE YD
Sbjct: 257 GEHYD 261
Score = 82 (33.9 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 301 NSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCK 340
++G +LA ET+P E + L LL +P +AW SF+ +
Sbjct: 159 DAGADLLACETLPNFSEIEALAELLTAYPRARAWFSFTLR 198
Score = 78 (32.5 bits), Expect = 4.4e-27, Sum P(3) = 4.4e-27
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 470 CEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHR 505
C + Y+ W G L+GGCCRT D +K R
Sbjct: 274 CAQLADYLPQWQAAGARLIGGCCRTTPADIAALKAR 309
>CGD|CAL0004923 [details] [associations]
symbol:SAM4 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008898 "homocysteine S-methyltransferase activity"
evidence=IEA] [GO:0046498 "S-adenosylhomocysteine metabolic
process" evidence=IEA] [GO:0050667 "homocysteine metabolic process"
evidence=IEA] [GO:0019284 "L-methionine biosynthetic process from
S-adenosylmethionine" evidence=IEA] InterPro:IPR003726 Pfam:PF02574
PROSITE:PS50970 CGD:CAL0004923 GO:GO:0008898 Gene3D:3.20.20.330
SUPFAM:SSF82282 EMBL:AACQ01000177 EMBL:AACQ01000176 eggNOG:COG2040
KO:K00547 RefSeq:XP_711874.1 RefSeq:XP_711903.1 STRING:Q59QD2
GeneID:3646467 GeneID:3646506 KEGG:cal:CaO19.386
KEGG:cal:CaO19.8016 Uniprot:Q59QD2
Length = 311
Score = 246 (91.7 bits), Expect = 4.9e-20, P = 4.9e-20
Identities = 58/190 (30%), Positives = 103/190 (54%)
Query: 158 DILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPA 217
D++IAGS+GPY L +GSEY GDY + V++ + E+H P + + DI+ IETIP+
Sbjct: 113 DVIIAGSIGPYATLLANGSEYNGDY-QGVTDEELIEYHTPLFEFYENSDVDIICIETIPS 171
Query: 218 SKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCV 277
+E +++ L +++ ++ ++S + + +S+G S +VA+ +N + +AVG+NC
Sbjct: 172 FQELKVIIGLAKKYTSKEFFISINPQTGSALSDGTSLIEVAQLFAEINDPRFVAVGINCT 231
Query: 278 RPLMVSSLIEQLKTENIPLVVYPNSG------EHILAIETIPASKEAQMLCRLLREWPNQ 331
V + L + PL +YPN G H + + S ++ + + L +PN
Sbjct: 232 SYENVDQISTYLT--DFPLFIYPNLGFVYDTTVHKFVSKVLQESTWSKSVAKWLA-FPNV 288
Query: 332 KAWLSFSCKT 341
KA + C T
Sbjct: 289 KA-IGGCCST 297
Score = 209 (78.6 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 50/150 (33%), Positives = 78/150 (52%)
Query: 6 LIDGGFSSQL-------STYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMT 58
+IDG ++L STY+ G PLWS L + V Q H D+I GAD+++T
Sbjct: 14 VIDGALGTELERLLPTTSTYLPS---GSPLWSGQVLIKNPELVEQVHLDYINVGADMIIT 70
Query: 59 NSYQASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSV 118
++YQ S +++ D D + L S+++ K A+ D++IAGS+
Sbjct: 71 STYQTSYASLHKYIGYDMDQAIALWNSALNVAKNAVKKSGRD----------DVIIAGSI 120
Query: 119 GPYGASLRDGSEYRGDYVEHVSEATMAEWH 148
GPY L +GSEY GDY + V++ + E+H
Sbjct: 121 GPYATLLANGSEYNGDY-QGVTDEELIEYH 149
Score = 91 (37.1 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 514 ISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQLKTENIPLVVYPNSGERYD 573
+S+G S +VA+ +N + +AVG+NC V + L + PL +YPN G YD
Sbjct: 202 LSDGTSLIEVAQLFAEINDPRFVAVGINCTSYENVDQISTYLT--DFPLFIYPNLGFVYD 259
Score = 89 (36.4 bits), Expect = 3.8e-20, Sum P(2) = 3.8e-20
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 343 NIPLVVYPNSGERYDAVNARWIDRDLCEPV-DKYVTDWLD-EGVALVGGCCRT 393
+ PL +YPN G YD +++ + L E K V WL V +GGCC T
Sbjct: 245 DFPLFIYPNLGFVYDTTVHKFVSKVLQESTWSKSVAKWLAFPNVKAIGGCCST 297
Score = 48 (22.0 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 475 KYVTDWLD-EGVALVGGCCRT 494
K V WL V +GGCC T
Sbjct: 277 KSVAKWLAFPNVKAIGGCCST 297
>ASPGD|ASPL0000037651 [details] [associations]
symbol:AN3378 species:162425 "Emericella nidulans"
[GO:0008898 "homocysteine S-methyltransferase activity"
evidence=IEA;RCA] [GO:0000096 "sulfur amino acid metabolic process"
evidence=IEA;RCA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR003726 Pfam:PF02574 PROSITE:PS50970 EMBL:BN001306
GO:GO:0008898 Gene3D:3.20.20.330 SUPFAM:SSF82282 EMBL:AACD01000055
eggNOG:COG2040 HOGENOM:HOG000265278 KO:K00547 OrthoDB:EOG42NN8C
RefSeq:XP_660982.1 ProteinModelPortal:Q5B7V2 STRING:Q5B7V2
EnsemblFungi:CADANIAT00009662 GeneID:2874359 KEGG:ani:AN3378.2
OMA:ASHTIND Uniprot:Q5B7V2
Length = 355
Score = 193 (73.0 bits), Expect = 4.2e-18, Sum P(2) = 4.2e-18
Identities = 50/149 (33%), Positives = 78/149 (52%)
Query: 4 VKLIDGGFSSQLSTYVGDII--DGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSY 61
+ L+DGG + L +Y +I PLWSS+ L ++ + HR F AGADI++T +Y
Sbjct: 3 ILLLDGGLGTTLESYPFNITFTSETPLWSSHLLISSPSTLQSAHRAFYDAGADILLTATY 62
Query: 62 QASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPY 121
Q+SI GF D+S+ I + DY++ AI L + + +A S+GPY
Sbjct: 63 QSSIEGFART-----DASHT-INDAGDYMRSAIPLVRGAIPSSARQRPQQCRVALSLGPY 116
Query: 122 GASLRD-GSEYRGDYVEHVS-EATMAEWH 148
GA++ +EY G Y + E + +WH
Sbjct: 117 GATMSPVAAEYTGAYPPEMDGEDALRQWH 145
Score = 96 (38.9 bits), Expect = 4.2e-18, Sum P(2) = 4.2e-18
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 346 LVVYPNS--GERYDAVNARWIDRDL---CEPVDKYVTDWLD-------EGVALVGGCCRT 393
LV+YP+ GE+YD V W+ R+ C P D+ + D + EG+ +VGGCCR
Sbjct: 281 LVLYPDGTKGEKYDPVTKTWVARETVVRC-PWDESLWDVVQGQSEGDWEGI-IVGGCCRA 338
Query: 394 YAEDTLHMKHRLD 406
D ++ R+D
Sbjct: 339 GPADIAALRRRID 351
Score = 80 (33.2 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 161 IAGSVGPYGASLRD-GSEYRGDYVEHVS-EATMAEWHRPRIQALVEAG-----ADILAIE 213
+A S+GPYGA++ +EY G Y + E + +WH R+ V+ D +A E
Sbjct: 109 VALSLGPYGATMSPVAAEYTGAYPPEMDGEDALRQWHAGRLNVFVDDRESWDQVDFVAFE 168
Query: 214 TIPASKE 220
T+ + E
Sbjct: 169 TLIRADE 175
Score = 66 (28.3 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 479 DWLDEGVALVGGCCRTYAEDTLHMKHRLD 507
DW EG+ +VGGCCR D ++ R+D
Sbjct: 326 DW--EGI-IVGGCCRAGPADIAALRRRID 351
>SGD|S000003985 [details] [associations]
symbol:MHT1 "S-methylmethionine-homocysteine
methyltransferase" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0009086 "methionine
biosynthetic process" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0008168 "methyltransferase activity"
evidence=IEA] [GO:0008898 "homocysteine S-methyltransferase
activity" evidence=IEA;IDA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0000096 "sulfur amino acid metabolic process"
evidence=IMP] [GO:0008652 "cellular amino acid biosynthetic
process" evidence=IEA] [GO:0032259 "methylation" evidence=IEA]
InterPro:IPR003726 Pfam:PF02574 PROSITE:PS50970 SGD:S000003985
GO:GO:0005737 GO:GO:0046872 EMBL:BK006945 GO:GO:0009086 EMBL:Z47973
GO:GO:0008898 Gene3D:3.20.20.330 SUPFAM:SSF82282 GO:GO:0000096
eggNOG:COG2040 OMA:ACETIPC EMBL:Z73167 EMBL:AY558194 PIR:S50958
RefSeq:NP_013038.1 ProteinModelPortal:Q12525 DIP:DIP-1934N
IntAct:Q12525 MINT:MINT-397842 STRING:Q12525 PaxDb:Q12525
EnsemblFungi:YLL062C GeneID:850664 KEGG:sce:YLL062C CYGD:YLL062c
GeneTree:ENSGT00510000049619 HOGENOM:HOG000066018 OrthoDB:EOG4MSH79
NextBio:966638 Genevestigator:Q12525 GermOnline:YLL062C
Uniprot:Q12525
Length = 324
Score = 148 (57.2 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 57/237 (24%), Positives = 111/237 (46%)
Query: 85 SSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYV---EHVSE 141
S+ + E+ ++ R ++ RD +IAG A++ Y+ ++ E+ S
Sbjct: 41 SAAPFTSESFWEPSSQERKVVEEMYRDFMIAG------ANILMTITYQANFQSISENTSI 94
Query: 142 ATMAEWHRLITDDPA--RDIL-----IAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEW 194
T+A + R + + R+ + + GS+GP+ A + EY GDY H +
Sbjct: 95 KTLAAYKRFLDKIVSFTREFIGEERYLIGSIGPWAAHV--SCEYTGDYGPHPENIDYYGF 152
Query: 195 HRPRIQALVE-AGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGES 253
+P+++ + D++ ETIP E + + + + ++ S D+ + +G +
Sbjct: 153 FKPQLENFNQNRDIDLIGFETIPNFHELKAILSWDEDIISKPFYIGLSVDDNSLLRDGTT 212
Query: 254 FTQVA---RTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIP---LVVYPNSGE 304
+++ + N L+ +GVNCV S+LI ++ E++P L+VYPNSGE
Sbjct: 213 LEEISVHIKGLGNKINKNLLLMGVNCVS-FNQSALILKMLHEHLPGMPLLVYPNSGE 268
Score = 112 (44.5 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 344 IPLVVYPNSGERYDAVNARWI-DRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMK 402
+PL+VYPNSGE Y+ W + + + V ++D G ++GGCCRT +D +
Sbjct: 258 MPLLVYPNSGEIYNPKEKTWHRPTNKLDDWETTVKKFVDNGARIIGGCCRTSPKDIAEIA 317
Query: 403 HRLDDW 408
+D +
Sbjct: 318 SAVDKY 323
Score = 107 (42.7 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 41/145 (28%), Positives = 71/145 (48%)
Query: 4 VKLIDGGFSSQLSTYVGDIIDGHPLWS-------SYFLATAKD--AVVQTHRDFIKAGAD 54
V ++DGG ++L G I+ P+WS S++ ++++ V + +RDF+ AGA+
Sbjct: 17 VLILDGGQGTELENR-GININS-PVWSAAPFTSESFWEPSSQERKVVEEMYRDFMIAGAN 74
Query: 55 IVMTNSYQASIGGFMEFLDLDYDSSYQ-LIKSSVDYVKEAIALEATHARIRSDDPARDIL 113
I+MT +YQA+ E + ++Y+ + V + +E I E
Sbjct: 75 ILMTITYQANFQSISENTSIKTLAAYKRFLDKIVSFTREFIGEER--------------Y 120
Query: 114 IAGSVGPYGASLRDGSEYRGDYVEH 138
+ GS+GP+ A + EY GDY H
Sbjct: 121 LIGSIGPWAAHV--SCEYTGDYGPH 143
Score = 79 (32.9 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 535 LIAVGVNCVRPLMVSPLIEQLKTENIP---LVVYPNSGERYD 573
L+ +GVNCV S LI ++ E++P L+VYPNSGE Y+
Sbjct: 231 LLLMGVNCVS-FNQSALILKMLHEHLPGMPLLVYPNSGEIYN 271
Score = 68 (29.0 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 477 VTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDW 509
V ++D G ++GGCCRT +D + +D +
Sbjct: 291 VKKFVDNGARIIGGCCRTSPKDIAEIASAVDKY 323
Score = 38 (18.4 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 396 EDTLHMK-HRLDDWVSGLSTYV 416
E T H ++LDDW + + +V
Sbjct: 274 EKTWHRPTNKLDDWETTVKKFV 295
>WB|WBGene00020491 [details] [associations]
symbol:T13G4.4 species:6239 "Caenorhabditis elegans"
[GO:0008898 "homocysteine S-methyltransferase activity"
evidence=IEA] InterPro:IPR003726 Pfam:PF02574 PROSITE:PS50970
GO:GO:0008898 Gene3D:3.20.20.330 SUPFAM:SSF82282 eggNOG:COG2040
GeneTree:ENSGT00510000049619 EMBL:FO080889 RefSeq:NP_508223.2
PaxDb:Q966F6 EnsemblMetazoa:T13G4.4.1 EnsemblMetazoa:T13G4.4.2
EnsemblMetazoa:T13G4.4.3 GeneID:188484 KEGG:cel:CELE_T13G4.4
UCSC:T13G4.4 CTD:188484 WormBase:T13G4.4 InParanoid:Q966F6
OMA:TAIGGCC NextBio:938976 Uniprot:Q966F6
Length = 304
Score = 175 (66.7 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 59/196 (30%), Positives = 95/196 (48%)
Query: 124 SLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYV 183
++ + +E R Y ++ E + H L T + D+ GSVG D SEY G Y+
Sbjct: 69 TIPENAEKRELYEKYFEETCLKLCH-LTTG--SSDVEAWGSVGTLATMYHDLSEYTGAYM 125
Query: 184 EHVSEATMAEWHRPRI-QALVEAGADI--LAIETIPASKEAQMLCRLLREWPHQKAWLSF 240
+ SEA + +I L + I L ETIP++ E + +L+E+P +A +SF
Sbjct: 126 DQ-SEAKKTAYDYFKIILTLFHNRSSIRKLIFETIPSADEGSVALDVLQEFPEFEAVISF 184
Query: 241 SCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLV-VY 299
+ K+ + +GE T VA+ +P Q++ +G+NC P V + +L+ V VY
Sbjct: 185 TFKEHGCLRHGEKITSVAQQM-KQSP-QVLGIGINCTDPNNVLPALNELQPFAFSEVFVY 242
Query: 300 PNSGEHILAIETIPAS 315
PN G+ E I S
Sbjct: 243 PNKGDSKFLEEGIDES 258
Score = 95 (38.5 bits), Expect = 3.7e-09, Sum P(3) = 3.7e-09
Identities = 42/153 (27%), Positives = 68/153 (44%)
Query: 4 VKLIDGGFSSQLSTYVGDII--DGHPLWSSYFLATAKDAVVQT-HRDFIKAGADIVMTNS 60
V+L+DG SSQL + D + P WS F A A +++ ++ F+ ++ +N+
Sbjct: 2 VRLLDGSMSSQLLRFGYDCNQQENKPHWS--FPANADMELMENVYKSFLDLEVKVITSNT 59
Query: 61 YQASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGP 120
Y F LD + + + Y +E L+ H S D + GSVG
Sbjct: 60 YH-----FGSTLDKTIPENAEKRELYEKYFEET-CLKLCHLTTGSSD----VEAWGSVGT 109
Query: 121 YGASLRDGSEYRGDYVEHVSEA--TMAEWHRLI 151
D SEY G Y++ SEA T ++ ++I
Sbjct: 110 LATMYHDLSEYTGAYMDQ-SEAKKTAYDYFKII 141
Score = 91 (37.1 bits), Expect = 3.7e-09, Sum P(3) = 3.7e-09
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 514 ISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQLKTENIPLV-VYPNSGE-R 571
+ +GE T VA+ +P Q++ +G+NC P V P + +L+ V VYPN G+ +
Sbjct: 192 LRHGEKITSVAQQM-KQSP-QVLGIGINCTDPNNVLPALNELQPFAFSEVFVYPNKGDSK 249
Query: 572 YDFHLADEKNNCVKSDVT 589
+ DE N K+ VT
Sbjct: 250 FLEEGIDESNVFTKTLVT 267
Score = 74 (31.1 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 348 VYPNSGERYDAVNARWIDRDLCEP---VDKYVTDWLDEGVALVGGCC 391
VYPN G+ +++++ + E VT W+++GV +GGCC
Sbjct: 241 VYPNKGD------SKFLEEGIDESNVFTKTLVTSWIEKGVTAIGGCC 281
Score = 67 (28.6 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 477 VTDWLDEGVALVGGCC 492
VT W+++GV +GGCC
Sbjct: 266 VTSWIEKGVTAIGGCC 281
Score = 63 (27.2 bits), Expect = 3.7e-09, Sum P(3) = 3.7e-09
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 294 IPLVVYPN-SGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCK 340
I L ++ N S L ETIP++ E + +L+E+P +A +SF+ K
Sbjct: 140 IILTLFHNRSSIRKLIFETIPSADEGSVALDVLQEFPEFEAVISFTFK 187
>TIGR_CMR|SPO_3398 [details] [associations]
symbol:SPO_3398 "homocysteine S-methyltransferase family
protein" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008152
"metabolic process" evidence=ISS] [GO:0008898 "homocysteine
S-methyltransferase activity" evidence=ISS] InterPro:IPR003726
Pfam:PF02574 PROSITE:PS50970 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0008898 Gene3D:3.20.20.330
SUPFAM:SSF82282 HOGENOM:HOG000265278 RefSeq:YP_168594.1
ProteinModelPortal:Q5LN14 GeneID:3195042 KEGG:sil:SPO3398
PATRIC:23380251 OMA:NSYALVP ProtClustDB:CLSK934146 Uniprot:Q5LN14
Length = 298
Score = 115 (45.5 bits), Expect = 1.9e-13, Sum P(3) = 1.9e-13
Identities = 41/126 (32%), Positives = 58/126 (46%)
Query: 1 MANVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNS 60
M ++ L+DG +L G PLWS+ + A V HRD+ AGA I TN+
Sbjct: 1 MTDITLLDGSIGQELVKRAGK--RPTPLWSTSVMLEAPYHVGAVHRDYFDAGATIATTNT 58
Query: 61 YQASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGP 120
Y A + +E + D LI +++D + A A H R IAG++GP
Sbjct: 59 Y-AVLRDRLEPAGIG-DRFEALIDTALDQAESA---RAAHGSGR---------IAGALGP 104
Query: 121 YGASLR 126
GAS R
Sbjct: 105 LGASYR 110
Score = 102 (41.0 bits), Expect = 1.9e-13, Sum P(3) = 1.9e-13
Identities = 40/143 (27%), Positives = 63/143 (44%)
Query: 161 IAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKE 220
IAG++GP GAS YR D EA + ++A+ + D+ IET + +
Sbjct: 98 IAGALGPLGAS------YRPDICPPPEEAEAL--YADSVRAMNDR-VDLFLIETAASVAQ 148
Query: 221 AQMLCRLLREWPHQKAWLSFSCKDD--KHISNGESFTQVARTCYNMNPDQLIAVGVNCVR 278
A+ R + WLS + DD + +GE ++A P AV VNC R
Sbjct: 149 AEGALRGA-SLGTKPVWLSVTVMDDDGSRLRSGEGVGELAAIVKQYQPQ---AVLVNCSR 204
Query: 279 PLMVSSLIEQLKTENIPLVVYPN 301
P V++ ++ + +P Y N
Sbjct: 205 PEAVAAALDIIAGFGLPFGAYAN 227
Score = 71 (30.1 bits), Expect = 1.9e-13, Sum P(3) = 1.9e-13
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 357 DAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRL 405
+A+ AR +D E + W+D+ +VGGCC + H+ RL
Sbjct: 244 EALTAR-VDLTP-EAYADFALGWVDQSATIVGGCCEVGPDHIAHLARRL 290
Score = 70 (29.7 bits), Expect = 2.4e-13, Sum P(3) = 2.4e-13
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 476 YVTDWLDEGVALVGGCCRTYAEDTLHMKHRL 506
+ W+D+ +VGGCC + H+ RL
Sbjct: 260 FALGWVDQSATIVGGCCEVGPDHIAHLARRL 290
Score = 63 (27.2 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 506 LDDWDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQLKTENIPLVVY 565
+DD D + +GE ++A P AV VNC RP V+ ++ + +P Y
Sbjct: 170 MDD-DGSRLRSGEGVGELAAIVKQYQPQ---AVLVNCSRPEAVAAALDIIAGFGLPFGAY 225
Query: 566 PNSGER 571
N R
Sbjct: 226 ANGFTR 231
>SGD|S000006194 [details] [associations]
symbol:SAM4 "S-adenosylmethionine-homocysteine
methyltransferase" species:4932 "Saccharomyces cerevisiae"
[GO:0008898 "homocysteine S-methyltransferase activity"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0032259 "methylation"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0008652 "cellular amino acid biosynthetic process"
evidence=IEA] [GO:0008168 "methyltransferase activity"
evidence=IEA] [GO:0046498 "S-adenosylhomocysteine metabolic
process" evidence=IDA] [GO:0009086 "methionine biosynthetic
process" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0019284 "L-methionine biosynthetic process from
S-adenosylmethionine" evidence=IDA] [GO:0050667 "homocysteine
metabolic process" evidence=IDA] InterPro:IPR003726 Pfam:PF02574
PROSITE:PS50970 SGD:S000006194 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 EMBL:BK006949 GO:GO:0008898 Gene3D:3.20.20.330
SUPFAM:SSF82282 GO:GO:0050667 GO:GO:0046498 eggNOG:COG2040
KO:K00547 OMA:EGYMEYL GO:GO:0019284 GeneTree:ENSGT00510000049619
HOGENOM:HOG000066018 OrthoDB:EOG4MSH79 EMBL:Z73629 PIR:S65306
RefSeq:NP_015050.1 ProteinModelPortal:Q08985 SMR:Q08985
STRING:Q08985 PaxDb:Q08985 PeptideAtlas:Q08985 EnsemblFungi:YPL273W
GeneID:855855 KEGG:sce:YPL273W CYGD:YPL273w NextBio:980460
Genevestigator:Q08985 GermOnline:YPL273W Uniprot:Q08985
Length = 325
Score = 127 (49.8 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
Identities = 47/201 (23%), Positives = 94/201 (46%)
Query: 122 GASLRDGSEYRGDYVEHVSE----ATMAEWHRLITD--DPARDIL-----IAGSVGPYGA 170
GA + + Y+ Y + VSE T++E++ L+ D +R+ + + G +GP+GA
Sbjct: 73 GAEILMTTTYQTSY-KSVSENTPIRTLSEYNNLLNRIVDFSRNCIGEDKYLIGCIGPWGA 131
Query: 171 SLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGA-DILAIETIPASKEAQMLCRLLR 229
+ E+ GDY ++ +P+++ + D++ ETIP E + +
Sbjct: 132 HIC--REFTGDYGAEPENIDFYQYFKPQLENFNKNDKLDLIGFETIPNIHELKAILSWDE 189
Query: 230 EWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNM----NPDQLIAVGVNCVRPLMVSSL 285
+ ++ S + + +G + ++A+ ++ NP+ +G+NCV +
Sbjct: 190 SILSRPFYIGLSVHEHGVLRDGTTMEEIAQVIKDLGDKINPN-FSFLGINCVSFNQSPDI 248
Query: 286 IEQLKTE--NIPLVVYPNSGE 304
+E L N+ L+ YPNSGE
Sbjct: 249 LESLHQALPNMALLAYPNSGE 269
Score = 118 (46.6 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 343 NIPLVVYPNSGERYDAVNARWI-DRDLCEPVDKYVTDWLDEGVALVGGCCRTYAED 397
N+ L+ YPNSGE YD W+ + D D V ++ G ++GGCCRT +D
Sbjct: 258 NMALLAYPNSGEVYDTEKKIWLPNSDKLNSWDTVVKQYISSGARIIGGCCRTSPKD 313
Score = 98 (39.6 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 39/143 (27%), Positives = 64/143 (44%)
Query: 4 VKLIDGGFSSQLSTYVGDIIDGHPLWSSY-FLATA---------KDAVVQTHRDFIKAGA 53
V ++DGG ++L I +P+WS+ F++ + + V + DF+ AGA
Sbjct: 17 VLVLDGGQGTELENR--GIKVANPVWSTIPFISESFWSDESSANRKIVKEMFNDFLNAGA 74
Query: 54 DIVMTNSYQASIGGFMEFLDLDYDSSYQ-LIKSSVDYVKEAIALEATHARIRSDDPARDI 112
+I+MT +YQ S E + S Y L+ VD+ + I D
Sbjct: 75 EILMTTTYQTSYKSVSENTPIRTLSEYNNLLNRIVDFSRNCIG--------------EDK 120
Query: 113 LIAGSVGPYGASLRDGSEYRGDY 135
+ G +GP+GA + E+ GDY
Sbjct: 121 YLIGCIGPWGAHIC--REFTGDY 141
Score = 76 (31.8 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 518 ESFTQVARTCYN-MNPDQLIAVGVNCVRPLMVSPLIEQLKTE--NIPLVVYPNSGERYD 573
E QV + + +NP+ +G+NCV ++E L N+ L+ YPNSGE YD
Sbjct: 215 EEIAQVIKDLGDKINPN-FSFLGINCVSFNQSPDILESLHQALPNMALLAYPNSGEVYD 272
Score = 70 (29.7 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 463 LWI-DRDLCEPVDKYVTDWLDEGVALVGGCCRTYAED 498
+W+ + D D V ++ G ++GGCCRT +D
Sbjct: 277 IWLPNSDKLNSWDTVVKQYISSGARIIGGCCRTSPKD 313
>POMBASE|SPAC57A7.07c [details] [associations]
symbol:SPAC57A7.07c "homocysteine methyltransferase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000096
"sulfur amino acid metabolic process" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006534 "cysteine metabolic process" evidence=NAS] [GO:0008898
"homocysteine S-methyltransferase activity" evidence=ISO]
InterPro:IPR003726 Pfam:PF02574 PROSITE:PS50970
PomBase:SPAC57A7.07c GO:GO:0005634 GO:GO:0005737 EMBL:CU329670
GO:GO:0006534 GO:GO:0008898 Gene3D:3.20.20.330 SUPFAM:SSF82282
eggNOG:COG2040 PIR:T38947 RefSeq:NP_593374.1
ProteinModelPortal:P87138 EnsemblFungi:SPAC57A7.07c.1
GeneID:2542156 KEGG:spo:SPAC57A7.07c OMA:IREESIP OrthoDB:EOG42NN8C
NextBio:20803228 Uniprot:P87138
Length = 308
Score = 137 (53.3 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 36/153 (23%), Positives = 78/153 (50%)
Query: 161 IAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGA------DILAIET 214
IA +G + A++ EY+ Y + + +H+ RI+A+ + D +A E+
Sbjct: 97 IALCLGSHAATIPGCMEYKMIYDKPTDFEMLYNFHKNRIEAIQASNPKAFEKIDFIAFES 156
Query: 215 IPASKEAQMLCRLLRE---WPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIA 271
+P EA+++C+L+++ W ++ W++ +C + I E + + ++N D +
Sbjct: 157 LPHVTEAEVVCQLIQDMKGWS-KRCWITCTCPERSTI---ERVSSIISKILSINHDSIWG 212
Query: 272 VGVNCVR-PLM--VSSLIEQLKTENIPLVVYPN 301
+GVNC L+ ++ ++ L NI ++YP+
Sbjct: 213 IGVNCFHLSLLEPIAKMLSSLLPSNITAILYPD 245
Score = 78 (32.5 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 6 LIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQ--A 63
++DGG S+ + + + I LW+S L + VV+ H +F+K DI+ T +YQ A
Sbjct: 3 MLDGG-STAILPKLPESISESRLWTSEALVRYPEIVVKHHEEFLKV-CDIISTFTYQLDA 60
Query: 64 SI 65
SI
Sbjct: 61 SI 62
Score = 43 (20.2 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 380 LDEGVALVGGCCRT 393
L G ++GGCC T
Sbjct: 282 LHNGNLILGGCCET 295
Score = 43 (20.2 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 481 LDEGVALVGGCCRT 494
L G ++GGCC T
Sbjct: 282 LHNGNLILGGCCET 295
>TIGR_CMR|GSU_2974 [details] [associations]
symbol:GSU_2974 "methylenetetrahydrofolate reductase
family protein" species:243231 "Geobacter sulfurreducens PCA"
[GO:0008152 "metabolic process" evidence=ISS] [GO:0016491
"oxidoreductase activity" evidence=ISS] UniPathway:UPA00193
InterPro:IPR003171 InterPro:IPR003726 Pfam:PF02219 Pfam:PF02574
PROSITE:PS50970 GO:GO:0006555 GO:GO:0008652 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0008898 Gene3D:3.20.20.330
SUPFAM:SSF82282 GO:GO:0035999 KO:K00547 GO:GO:0004489
RefSeq:NP_954016.1 ProteinModelPortal:Q748M7 GeneID:2687368
KEGG:gsu:GSU2974 PATRIC:22028805 HOGENOM:HOG000028409 OMA:QSHLMGL
ProtClustDB:PRK08645 BioCyc:GSUL243231:GH27-2948-MONOMER
Uniprot:Q748M7
Length = 605
Score = 105 (42.0 bits), Expect = 6.7e-09, Sum P(3) = 6.7e-09
Identities = 39/148 (26%), Positives = 66/148 (44%)
Query: 158 DILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPA 217
D +AGSVGP +R +GD E ++ T+ + R + AL E D+L +ET
Sbjct: 99 DAFVAGSVGPL---VR----MKGDEQELSAQETVDIFRR-QTHALAEGEVDLLILETFTD 150
Query: 218 SKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNC- 276
+ + RE + + ++ ++ G +V R + VG NC
Sbjct: 151 LAQMRHALTAARE-TGLPVVANMAFLENGRLAGG---IEVERVAVELTAAGACVVGANCG 206
Query: 277 VRPLMVSSLIEQL-KTENIPLVVYPNSG 303
PL + I+++ + ++PL YPNSG
Sbjct: 207 AGPLEILGTIQRMGRVTDLPLAAYPNSG 234
Score = 94 (38.1 bits), Expect = 6.7e-09, Sum P(3) = 6.7e-09
Identities = 23/66 (34%), Positives = 32/66 (48%)
Query: 340 KTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTL 399
+ ++PL YPNSG + VN R + R + + + G ALVGGCC T E
Sbjct: 221 RVTDLPLAAYPNSGFP-EYVNGRHVYRTTPDYFADRAVEMVGAGAALVGGCCGTTPEHVR 279
Query: 400 HMKHRL 405
+ RL
Sbjct: 280 CLAQRL 285
Score = 59 (25.8 bits), Expect = 6.7e-09, Sum P(3) = 6.7e-09
Identities = 9/24 (37%), Positives = 19/24 (79%)
Query: 41 VVQTHRDFIKAGADIVMTNSYQAS 64
V++ HR+++ AGA ++ TN++ A+
Sbjct: 44 VLELHREYLAAGARVIETNTFGAN 67
Score = 58 (25.5 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 474 DKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRL 506
D+ V + + G ALVGGCC T E + RL
Sbjct: 254 DRAV-EMVGAGAALVGGCCGTTPEHVRCLAQRL 285
>UNIPROTKB|Q9KUW9 [details] [associations]
symbol:metH "Methionine synthase" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0008705 "methionine
synthase activity" evidence=ISS] [GO:0009086 "methionine
biosynthetic process" evidence=ISS] InterPro:IPR000489
InterPro:IPR003726 InterPro:IPR003759 InterPro:IPR004223
InterPro:IPR006158 InterPro:IPR011005 InterPro:IPR011822
Pfam:PF00809 Pfam:PF02310 Pfam:PF02574 Pfam:PF02607 Pfam:PF02965
PIRSF:PIRSF000381 PROSITE:PS50970 PROSITE:PS50972 PROSITE:PS50974
PROSITE:PS51332 PROSITE:PS51337 SMART:SM01018 GO:GO:0046872
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008270 GO:GO:0005622
UniPathway:UPA00051 GO:GO:0008898 Gene3D:3.20.20.330
SUPFAM:SSF82282 GO:GO:0031419 Gene3D:3.20.20.20 SUPFAM:SSF51717
GO:GO:0042558 Gene3D:3.40.50.280 SUPFAM:SSF52242 GO:GO:0008705
eggNOG:COG1410 KO:K00548 Gene3D:1.10.1240.10 Gene3D:3.10.196.10
PANTHER:PTHR21091:SF9 SUPFAM:SSF56507 SUPFAM:SSF47644
TIGRFAMs:TIGR02082 ProtClustDB:PRK09490 OMA:RNQPVEK PIR:E82328
RefSeq:NP_230044.1 ProteinModelPortal:Q9KUW9 SMR:Q9KUW9
PRIDE:Q9KUW9 DNASU:2614987 GeneID:2614987 KEGG:vch:VC0390
PATRIC:20079861 Uniprot:Q9KUW9
Length = 1226
Score = 95 (38.5 bits), Expect = 4.1e-08, Sum P(4) = 4.1e-08
Identities = 37/164 (22%), Positives = 72/164 (43%)
Query: 146 EWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEA 205
EW DP+R +AG +GP + + +V+ + E + +AL++
Sbjct: 118 EW---TAKDPSRPRYVAGVLGPTNRTCSISPDVNDPGFRNVTFDGLVEAYSESTRALIKG 174
Query: 206 GADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFT---QVARTCY 262
G+D++ IETI + A+ C + ++ +S I++ T Q Y
Sbjct: 175 GSDLILIETIFDTLNAKA-CAFAVDSVFEELGISLPVMISGTITDASGRTLSGQTTEAFY 233
Query: 263 N-MNPDQLIAVGVNC-VRPLMVSSLIEQL-KTENIPLVVYPNSG 303
N + + I+ G+NC + P + +E+L + + +PN+G
Sbjct: 234 NALRHVRPISFGLNCALGPDELRQYVEELSRISECYVSAHPNAG 277
Score = 89 (36.4 bits), Expect = 4.1e-08, Sum P(4) = 4.1e-08
Identities = 31/128 (24%), Positives = 58/128 (45%)
Query: 4 VKLIDGGFSSQLSTYV--------GDIIDGH-PLWSS--YFLATAKDAVVQTHRDFIKAG 52
+ LIDGG + + +Y +D H L + + T + + H +++AG
Sbjct: 17 ILLIDGGMGTMIQSYKLQEEDYRGARFVDWHCDLKGNNDLLVLTQPQIIKEIHSAYLEAG 76
Query: 53 ADIVMTNSYQASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDI 112
ADI+ TN++ ++ DYD Q + + +++ +A E + DP+R
Sbjct: 77 ADILETNTFNSTTIAMA-----DYDM--QSLSAEINFAAAKLAREVAD-EWTAKDPSRPR 128
Query: 113 LIAGSVGP 120
+AG +GP
Sbjct: 129 YVAGVLGP 136
Score = 69 (29.3 bits), Expect = 4.1e-08, Sum P(4) = 4.1e-08
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 461 PNLWIDRDL-CEPVDKYVTDWLDEG-VALVGGCCRTYAE 497
PN + + DL E + +++ +W G + LVGGCC T E
Sbjct: 279 PNAFGEYDLSAEEMAEHIAEWAQAGFLNLVGGCCGTTPE 317
Score = 50 (22.7 bits), Expect = 4.1e-08, Sum P(4) = 4.1e-08
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 510 DDKHISNGESFTQVARTCYNMNPDQLIAVGVN-CV 543
DD + + ES TQVA YN+ G N C+
Sbjct: 1011 DDIEVYSDESRTQVAHVLYNLRQQTEKPKGANYCL 1045
>TIGR_CMR|VC_0390 [details] [associations]
symbol:VC_0390 "5-methyltetrahydrofolate--homocysteine
methyltransferase" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0008705 "methionine synthase activity" evidence=ISS]
[GO:0009086 "methionine biosynthetic process" evidence=ISS]
InterPro:IPR000489 InterPro:IPR003726 InterPro:IPR003759
InterPro:IPR004223 InterPro:IPR006158 InterPro:IPR011005
InterPro:IPR011822 Pfam:PF00809 Pfam:PF02310 Pfam:PF02574
Pfam:PF02607 Pfam:PF02965 PIRSF:PIRSF000381 PROSITE:PS50970
PROSITE:PS50972 PROSITE:PS50974 PROSITE:PS51332 PROSITE:PS51337
SMART:SM01018 GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0008270 GO:GO:0005622 UniPathway:UPA00051 GO:GO:0008898
Gene3D:3.20.20.330 SUPFAM:SSF82282 GO:GO:0031419 Gene3D:3.20.20.20
SUPFAM:SSF51717 GO:GO:0042558 Gene3D:3.40.50.280 SUPFAM:SSF52242
GO:GO:0008705 eggNOG:COG1410 KO:K00548 Gene3D:1.10.1240.10
Gene3D:3.10.196.10 PANTHER:PTHR21091:SF9 SUPFAM:SSF56507
SUPFAM:SSF47644 TIGRFAMs:TIGR02082 ProtClustDB:PRK09490 OMA:RNQPVEK
PIR:E82328 RefSeq:NP_230044.1 ProteinModelPortal:Q9KUW9 SMR:Q9KUW9
PRIDE:Q9KUW9 DNASU:2614987 GeneID:2614987 KEGG:vch:VC0390
PATRIC:20079861 Uniprot:Q9KUW9
Length = 1226
Score = 95 (38.5 bits), Expect = 4.1e-08, Sum P(4) = 4.1e-08
Identities = 37/164 (22%), Positives = 72/164 (43%)
Query: 146 EWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEA 205
EW DP+R +AG +GP + + +V+ + E + +AL++
Sbjct: 118 EW---TAKDPSRPRYVAGVLGPTNRTCSISPDVNDPGFRNVTFDGLVEAYSESTRALIKG 174
Query: 206 GADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFT---QVARTCY 262
G+D++ IETI + A+ C + ++ +S I++ T Q Y
Sbjct: 175 GSDLILIETIFDTLNAKA-CAFAVDSVFEELGISLPVMISGTITDASGRTLSGQTTEAFY 233
Query: 263 N-MNPDQLIAVGVNC-VRPLMVSSLIEQL-KTENIPLVVYPNSG 303
N + + I+ G+NC + P + +E+L + + +PN+G
Sbjct: 234 NALRHVRPISFGLNCALGPDELRQYVEELSRISECYVSAHPNAG 277
Score = 89 (36.4 bits), Expect = 4.1e-08, Sum P(4) = 4.1e-08
Identities = 31/128 (24%), Positives = 58/128 (45%)
Query: 4 VKLIDGGFSSQLSTYV--------GDIIDGH-PLWSS--YFLATAKDAVVQTHRDFIKAG 52
+ LIDGG + + +Y +D H L + + T + + H +++AG
Sbjct: 17 ILLIDGGMGTMIQSYKLQEEDYRGARFVDWHCDLKGNNDLLVLTQPQIIKEIHSAYLEAG 76
Query: 53 ADIVMTNSYQASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDI 112
ADI+ TN++ ++ DYD Q + + +++ +A E + DP+R
Sbjct: 77 ADILETNTFNSTTIAMA-----DYDM--QSLSAEINFAAAKLAREVAD-EWTAKDPSRPR 128
Query: 113 LIAGSVGP 120
+AG +GP
Sbjct: 129 YVAGVLGP 136
Score = 69 (29.3 bits), Expect = 4.1e-08, Sum P(4) = 4.1e-08
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 461 PNLWIDRDL-CEPVDKYVTDWLDEG-VALVGGCCRTYAE 497
PN + + DL E + +++ +W G + LVGGCC T E
Sbjct: 279 PNAFGEYDLSAEEMAEHIAEWAQAGFLNLVGGCCGTTPE 317
Score = 50 (22.7 bits), Expect = 4.1e-08, Sum P(4) = 4.1e-08
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 510 DDKHISNGESFTQVARTCYNMNPDQLIAVGVN-CV 543
DD + + ES TQVA YN+ G N C+
Sbjct: 1011 DDIEVYSDESRTQVAHVLYNLRQQTEKPKGANYCL 1045
>SGD|S000004940 [details] [associations]
symbol:YMR321C "Putative protein of unknown function"
species:4932 "Saccharomyces cerevisiae" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008898 "homocysteine S-methyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0032259 "methylation" evidence=IEA] [GO:0008168
"methyltransferase activity" evidence=IEA] InterPro:IPR003726
Pfam:PF02574 PROSITE:PS50970 SGD:S000004940 EMBL:BK006946
EMBL:Z54141 RefSeq:NP_014054.3 GeneID:855371 KEGG:sce:YMR321C
GO:GO:0008898 Gene3D:3.20.20.330 SUPFAM:SSF82282 KO:K01689
RefSeq:NP_014056.3 GeneID:855373 KEGG:sce:YMR323W
GeneTree:ENSGT00510000049619 OrthoDB:EOG4MSH79 PIR:S69879
ProteinModelPortal:Q04898 SMR:Q04898 STRING:Q04898
EnsemblFungi:YMR321C CYGD:YMR321c NextBio:979154
Genevestigator:Q04898 GermOnline:YMR321C Uniprot:Q04898
Length = 105
Score = 118 (46.6 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 343 NIPLVVYPNSGERYDAVNARWI-DRDLCEPVDKYVTDWLDEGVALVGGCCRTYAED 397
N+ L+ YPNSGE YD W+ + D D V ++ G ++GGCCRT +D
Sbjct: 38 NMALLAYPNSGEVYDTEKKIWLPNSDKLNSWDTVVKQYISSGARIIGGCCRTSPKD 93
Score = 70 (29.7 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 463 LWI-DRDLCEPVDKYVTDWLDEGVALVGGCCRTYAED 498
+W+ + D D V ++ G ++GGCCRT +D
Sbjct: 57 IWLPNSDKLNSWDTVVKQYISSGARIIGGCCRTSPKD 93
Score = 69 (29.3 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 264 MNPDQLIAVGVNCVRPLMVSSLIEQLKTE--NIPLVVYPNSGE 304
+NP+ L +G+NCV ++E L N+ L+ YPNSGE
Sbjct: 8 INPN-LSFLGINCVSFNQSPDILESLHQALPNMALLAYPNSGE 49
>TIGR_CMR|SPO_1884 [details] [associations]
symbol:SPO_1884 "homocysteine S-methyltransferase family
protein" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008152
"metabolic process" evidence=ISS] [GO:0008898 "homocysteine
S-methyltransferase activity" evidence=ISS] InterPro:IPR003726
Pfam:PF02574 PROSITE:PS50970 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0008898 Gene3D:3.20.20.330
SUPFAM:SSF82282 HOGENOM:HOG000265278 KO:K00548 RefSeq:YP_167121.1
ProteinModelPortal:Q5LS84 GeneID:3193239 KEGG:sil:SPO1884
PATRIC:23377101 OMA:VAWIETM ProtClustDB:PRK07534 Uniprot:Q5LS84
Length = 339
Score = 96 (38.9 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 33/110 (30%), Positives = 51/110 (46%)
Query: 111 DILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGA 170
D+ + + G A L+ E +G V ++ AE R + D R +++AGSVGP G
Sbjct: 60 DLFLTNTFGGTAARLKL-HEAQGR-VRELNRVG-AELGREVADRAGRKVIVAGSVGPTGE 116
Query: 171 SLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKE 220
+ V +S A E + + L E G D+L +ETI A +E
Sbjct: 117 IMEP--------VGSLSHAAAVEMFHEQAEGLKEGGVDVLWLETISAPEE 158
Score = 68 (29.0 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 375 YVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATA 434
Y T D G ++GGCC T M+ LD G + +I+D ++S T
Sbjct: 263 YATMARDAGAKIIGGCCGTMPAHLTAMRAALDSTPRGERPTLEEIVDKIGPFTSASDGTG 322
Query: 435 KDA 437
DA
Sbjct: 323 DDA 325
>UNIPROTKB|P13009 [details] [associations]
symbol:metH species:83333 "Escherichia coli K-12"
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0008705 "methionine
synthase activity" evidence=IEA;IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0042558 "pteridine-containing compound metabolic
process" evidence=IEA] [GO:0032259 "methylation" evidence=IEA]
[GO:0031419 "cobalamin binding" evidence=IEA;IDA] [GO:0008898
"homocysteine S-methyltransferase activity" evidence=IEA;IDA]
[GO:0008652 "cellular amino acid biosynthetic process"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA;IMP]
[GO:0008168 "methyltransferase activity" evidence=IDA] [GO:0009086
"methionine biosynthetic process" evidence=IEA] InterPro:IPR000489
InterPro:IPR003726 InterPro:IPR003759 InterPro:IPR004223
InterPro:IPR006158 InterPro:IPR011005 InterPro:IPR011822
Pfam:PF00809 Pfam:PF02310 Pfam:PF02574 Pfam:PF02607 Pfam:PF02965
PIRSF:PIRSF000381 PROSITE:PS50970 PROSITE:PS50972 PROSITE:PS50974
PROSITE:PS51332 PROSITE:PS51337 SMART:SM01018 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0008270 EMBL:U00006
UniPathway:UPA00051 GO:GO:0008898 Gene3D:3.20.20.330
SUPFAM:SSF82282 GO:GO:0031419 Gene3D:3.20.20.20 SUPFAM:SSF51717
GO:GO:0042558 Gene3D:3.40.50.280 SUPFAM:SSF52242 GO:GO:0008705
eggNOG:COG1410 HOGENOM:HOG000251409 KO:K00548 Gene3D:1.10.1240.10
Gene3D:3.10.196.10 PANTHER:PTHR21091:SF9 SUPFAM:SSF56507
SUPFAM:SSF47644 TIGRFAMs:TIGR02082 OMA:VRKEFWG EMBL:X16584
EMBL:J04975 PIR:B65209 RefSeq:NP_418443.1 RefSeq:YP_492162.1
PDB:1BMT PDB:1K7Y PDB:1K98 PDB:1MSK PDB:3BUL PDB:3IV9 PDB:3IVA
PDBsum:1BMT PDBsum:1K7Y PDBsum:1K98 PDBsum:1MSK PDBsum:3BUL
PDBsum:3IV9 PDBsum:3IVA ProteinModelPortal:P13009 SMR:P13009
IntAct:P13009 SWISS-2DPAGE:P13009 PaxDb:P13009 PRIDE:P13009
EnsemblBacteria:EBESCT00000002831 EnsemblBacteria:EBESCT00000018146
GeneID:12934458 GeneID:948522 KEGG:ecj:Y75_p3906 KEGG:eco:b4019
PATRIC:32123567 EchoBASE:EB0582 EcoGene:EG10587
ProtClustDB:PRK09490 BioCyc:EcoCyc:HOMOCYSMETB12-MONOMER
BioCyc:ECOL316407:JW3979-MONOMER
BioCyc:MetaCyc:HOMOCYSMETB12-MONOMER EvolutionaryTrace:P13009
Genevestigator:P13009 Uniprot:P13009
Length = 1227
Score = 89 (36.4 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 39/195 (20%), Positives = 81/195 (41%)
Query: 139 VSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPR 198
++ A EW + P +AG +GP + + +++ + +R
Sbjct: 110 LARACADEWTARTPEKPR---YVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAAYRES 166
Query: 199 IQALVEAGADILAIETIPASKEAQMLCRLLR-EWPHQKAWLSFSCKDDKHISNGESFT-Q 256
+ALVE GAD++ IET+ + A+ ++ E+ L ++G + + Q
Sbjct: 167 TKALVEGGADLILIETVFDTLNAKAAVFAVKTEFEALGVELPIMISGTITDASGRTLSGQ 226
Query: 257 VARTCYN-MNPDQLIAVGVNC-VRPLMVSSLIEQL-KTENIPLVVYPNSGEHILAIETIP 313
YN + + + G+NC + P + +++L + + +PN+G L
Sbjct: 227 TTEAFYNSLRHAEALTFGLNCALGPDELRQYVQELSRIAECYVTAHPNAG---LPNAFGE 283
Query: 314 ASKEAQMLCRLLREW 328
+A + + +REW
Sbjct: 284 YDLDADTMAKQIREW 298
Score = 66 (28.3 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 32/128 (25%), Positives = 57/128 (44%)
Query: 4 VKLIDGGFSSQLSTYVGDIID--GHPL--W------SSYFLATAKDAVVQT-HRDFIKAG 52
+ ++DGG + + +Y + D G W ++ L +K V+ H + +AG
Sbjct: 16 ILVLDGGMGTMIQSYRLNEADFRGERFADWPCDLKGNNDLLVLSKPEVIAAIHNAYFEAG 75
Query: 53 ADIVMTNSYQASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDI 112
ADI+ TN++ ++ + D +S I + + A A E T AR P +
Sbjct: 76 ADIIETNTFNSTT---IAMADYQMESLSAEINFAAAKLARACADEWT-ART----PEKPR 127
Query: 113 LIAGSVGP 120
+AG +GP
Sbjct: 128 YVAGVLGP 135
Score = 63 (27.2 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 461 PNLWIDRDL-CEPVDKYVTDWLDEG-VALVGGCCRTYAEDTLHMKHRLD 507
PN + + DL + + K + +W G + +VGGCC T + M ++
Sbjct: 278 PNAFGEYDLDADTMAKQIREWAQAGFLNIVGGCCGTTPQHIAAMSRAVE 326
>TIGR_CMR|CPS_1101 [details] [associations]
symbol:CPS_1101 "5-methyltetrahydrofolate--homocysteine
S-methyltransferase" species:167879 "Colwellia psychrerythraea 34H"
[GO:0008705 "methionine synthase activity" evidence=ISS]
[GO:0009086 "methionine biosynthetic process" evidence=ISS]
InterPro:IPR000489 InterPro:IPR003726 InterPro:IPR003759
InterPro:IPR004223 InterPro:IPR006158 InterPro:IPR011005
InterPro:IPR011822 Pfam:PF00809 Pfam:PF02310 Pfam:PF02574
Pfam:PF02607 Pfam:PF02965 PIRSF:PIRSF000381 PROSITE:PS50970
PROSITE:PS50972 PROSITE:PS50974 PROSITE:PS51332 PROSITE:PS51337
SMART:SM01018 GO:GO:0046872 GO:GO:0008270 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0008898
Gene3D:3.20.20.330 SUPFAM:SSF82282 GO:GO:0031419 Gene3D:3.20.20.20
SUPFAM:SSF51717 GO:GO:0042558 Gene3D:3.40.50.280 SUPFAM:SSF52242
GO:GO:0008705 eggNOG:COG1410 HOGENOM:HOG000251409 KO:K00548
Gene3D:1.10.1240.10 Gene3D:3.10.196.10 PANTHER:PTHR21091:SF9
SUPFAM:SSF56507 SUPFAM:SSF47644 TIGRFAMs:TIGR02082 OMA:VRKEFWG
ProtClustDB:PRK09490 RefSeq:YP_267845.1 ProteinModelPortal:Q487C0
SMR:Q487C0 STRING:Q487C0 GeneID:3522779 KEGG:cps:CPS_1101
PATRIC:21465469 BioCyc:CPSY167879:GI48-1183-MONOMER Uniprot:Q487C0
Length = 1230
Score = 84 (34.6 bits), Expect = 0.00089, Sum P(3) = 0.00089
Identities = 25/85 (29%), Positives = 42/85 (49%)
Query: 36 TAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIA 95
T + + H ++++AGADI+ TN++ A+ DYD Q + ++ V IA
Sbjct: 61 TQPEIIKAIHLEYLEAGADILETNTFNATTIAMA-----DYDM--QEYSAEINRVAAQIA 113
Query: 96 LEATHARIRSDDPARDILIAGSVGP 120
EA + + P R +AG +GP
Sbjct: 114 REAADEYTKKN-PDRPRFVAGVLGP 137
Score = 70 (29.7 bits), Expect = 0.00089, Sum P(3) = 0.00089
Identities = 32/155 (20%), Positives = 67/155 (43%)
Query: 154 DPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIE 213
+P R +AG +GP + + +V+ + + + AL+E G+DI+ IE
Sbjct: 124 NPDRPRFVAGVLGPTNRTCSISPDVNDPAYRNVTFDELKDAYIESTLALIEGGSDIILIE 183
Query: 214 TIPASKEAQMLCRLLREWPHQKAW-LSFSCKDDKHISNGESFT-QVARTCYN-MNPDQLI 270
TI + A+ + Q L ++G + + Q YN + + +
Sbjct: 184 TIFDTLNAKAAVFAVETVFDQLGERLPVMISGTITDASGRTLSGQTTEAFYNSLRHAKPV 243
Query: 271 AVGVNC-VRPLMVSSLIEQL-KTENIPLVVYPNSG 303
+ G+NC + P+ + + +L + + + +PN+G
Sbjct: 244 SFGLNCALGPVELRQYVAELSRICDTAVSAHPNAG 278
Score = 64 (27.6 bits), Expect = 0.00089, Sum P(3) = 0.00089
Identities = 30/128 (23%), Positives = 53/128 (41%)
Query: 461 PNLWIDRDLC-EPVDKYVTDWLDEG-VALVGGCCRTYAEDTLHMKHRLDDWDDKHISNGE 518
PN + + D E ++ +V +W G + ++GGCC T E M + + + E
Sbjct: 280 PNAFGEYDFTVEDMNTHVEEWASSGFLNIIGGCCGTTPEHIRGMADSVAKIKPRKVEKRE 339
Query: 519 SFTQVART-CYNMNPDQL-IAVG--VNCVRPLMVSPLIEQL---KTENIPLVVYPNSGER 571
+++ +N D L + VG N M LI + K ++ L N +
Sbjct: 340 IACRLSGLEALTINKDSLFVNVGERTNVTGSAMFKRLIVEEDYDKAISVALQQVENGAQI 399
Query: 572 YDFHLADE 579
D ++ DE
Sbjct: 400 IDINM-DE 406
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.422 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 591 591 0.00084 120 3 11 22 0.39 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 622 (66 KB)
Total size of DFA: 370 KB (2175 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 48.58u 0.08s 48.66t Elapsed: 00:00:28
Total cpu time: 48.59u 0.08s 48.67t Elapsed: 00:00:29
Start: Thu Aug 15 12:35:46 2013 End: Thu Aug 15 12:36:15 2013