RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17603
(591 letters)
>gnl|CDD|181899 PRK09485, mmuM, homocysteine methyltransferase; Provisional.
Length = 304
Score = 282 bits (724), Expect = 4e-91
Identities = 127/395 (32%), Positives = 170/395 (43%), Gaps = 114/395 (28%)
Query: 4 VKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQA 63
V ++DG +++L D+ LWS+ L + + Q H D+ +AGAD +T SYQA
Sbjct: 13 VLILDGALATELEARGCDL--NDSLWSAKVLLENPELIYQVHLDYFRAGADCAITASYQA 70
Query: 64 SIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGA 123
+ GF L + +LI+ SV +A EA R + A L+AGSVGPYGA
Sbjct: 71 TFQGFAA-RGLSEAEAEELIRRSV-----ELAKEA-----RDEFWAEKPLVAGSVGPYGA 119
Query: 124 SLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYV 183
L DGSEYRGDY
Sbjct: 120 YLADGSEYRGDY------------------------------------------------ 131
Query: 184 EHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLR-EWPHQKAWLSFSC 242
+SE + ++HRPRI+AL EAGAD+LA ETIP EA+ L LL+ E+P AWLSF+
Sbjct: 132 -GLSEEELQDFHRPRIEALAEAGADLLACETIPNLDEAEALVELLKEEFPGVPAWLSFTL 190
Query: 243 KDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNS 302
+D HIS+G + A Q++AVGVNC P +V++ I
Sbjct: 191 RDGTHISDGTPLAEAAALLAAS--PQVVAVGVNCTAPELVTAAI---------------- 232
Query: 303 GEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNAR 362
+ + PLVVYPNSGE YDAV
Sbjct: 233 -------------AALRAVTDK--------------------PLVVYPNSGEVYDAVTKT 259
Query: 363 WIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAED 397
W + + +W G L+GGCCRT ED
Sbjct: 260 WHGPADDASLGELAPEWYAAGARLIGGCCRTTPED 294
Score = 74.5 bits (184), Expect = 1e-14
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 510 DDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQLKT-ENIPLVVYPNS 568
D HIS+G + A Q++AVGVNC P +V+ I L+ + PLVVYPNS
Sbjct: 192 DGTHISDGTPLAEAAALLAAS--PQVVAVGVNCTAPELVTAAIAALRAVTDKPLVVYPNS 249
Query: 569 GERYD 573
GE YD
Sbjct: 250 GEVYD 254
Score = 40.2 bits (95), Expect = 0.002
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 464 WIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAED 498
W + + +W G L+GGCCRT ED
Sbjct: 260 WHGPADDASLGELAPEWYAAGARLIGGCCRTTPED 294
Score = 29.1 bits (66), Expect = 6.0
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 423 HPLWSSYFLATAKDAVVQTHRDFIK-GSQ 450
LWS+ L + + Q H D+ + G+
Sbjct: 33 DSLWSAKVLLENPELIYQVHLDYFRAGAD 61
>gnl|CDD|215269 PLN02489, PLN02489, homocysteine S-methyltransferase.
Length = 335
Score = 227 bits (582), Expect = 1e-69
Identities = 123/393 (31%), Positives = 181/393 (46%), Gaps = 104/393 (26%)
Query: 7 IDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIG 66
IDGGF+++L + D+ PLWS+ L T+ + + H D+++AGADI++T SYQA+I
Sbjct: 25 IDGGFATELERHGADL--NDPLWSAKCLITSPHLIRKVHLDYLEAGADIIITASYQATIQ 82
Query: 67 GFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLR 126
GF E L + S L++ SV+ IA EA
Sbjct: 83 GF-ESRGLSREESETLLRKSVE-----IACEA---------------------------- 108
Query: 127 DGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHV 186
R + + + + + R ++ P IL+A S+G YGA L DGSEY GDY V
Sbjct: 109 -----RDIFWDKCQKGSTSRPGRELSYRP---ILVAASIGSYGAYLADGSEYSGDYGPSV 160
Query: 187 SEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQK-AWLSFSCKDD 245
+ + ++HR R+Q L EAG D++A ETIP EAQ LL E + AW+SF+ KD
Sbjct: 161 TLEKLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFNSKDG 220
Query: 246 KHISNGESFTQ---VARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNS 302
++ +G+S + +A +C +++AVG+NC P + LI ++
Sbjct: 221 VNVVSGDSLLECASIADSC-----KKVVAVGINCTPPRFIHGLILSIR------------ 263
Query: 303 GEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNAR 362
K + P+VVYPNSGE YD
Sbjct: 264 -------------------------------------KVTSKPIVVYPNSGETYDGEAKE 286
Query: 363 WIDRDLCEPVD--KYVTDWLDEGVALVGGCCRT 393
W++ D YV W D G +L+GGCCRT
Sbjct: 287 WVESTGVSDEDFVSYVNKWRDAGASLIGGCCRT 319
Score = 56.6 bits (137), Expect = 1e-08
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 9/68 (13%)
Query: 510 DDKHISNGESFTQ---VARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQL-KTENIPLVVY 565
D ++ +G+S + +A +C +++AVG+NC P + LI + K + P+VVY
Sbjct: 219 DGVNVVSGDSLLECASIADSC-----KKVVAVGINCTPPRFIHGLILSIRKVTSKPIVVY 273
Query: 566 PNSGERYD 573
PNSGE YD
Sbjct: 274 PNSGETYD 281
Score = 38.5 bits (90), Expect = 0.008
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 476 YVTDWLDEGVALVGGCCRT 494
YV W D G +L+GGCCRT
Sbjct: 301 YVNKWRDAGASLIGGCCRT 319
>gnl|CDD|224951 COG2040, MHT1, Homocysteine/selenocysteine methylase
(S-methylmethionine-dependent) [Amino acid transport and
metabolism].
Length = 300
Score = 187 bits (478), Expect = 5e-55
Identities = 115/401 (28%), Positives = 169/401 (42%), Gaps = 123/401 (30%)
Query: 1 MANVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNS 60
+V ++DGG +++L D+ D PLWS+ L + V H DF++AGADI+ T +
Sbjct: 7 TLSVLILDGGLATELERRGCDLSD--PLWSALALVDEPEIVRNVHADFLRAGADIITTAT 64
Query: 61 YQASIGGFMEFLDLDYDSSYQLIKSSV---DYVKEAIALEATHARIRSDDPARDILIAGS 117
YQA+ GF E + D + QLI+ SV ++A E IAGS
Sbjct: 65 YQATPEGFAERVSE--DEAKQLIRRSVELARAARDAYGEEN-------------QNIAGS 109
Query: 118 VGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSE 177
+GPYGA+L D EYRGDY
Sbjct: 110 LGPYGAALAD--EYRGDY------------------------------------------ 125
Query: 178 YRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAW 237
S+ + ++HRPRI+AL EAGAD+LA ET+P EA+ + +L++E+ + AW
Sbjct: 126 -------GASQDALYKFHRPRIEALNEAGADLLACETLPNITEAEAIVQLVQEF-SKPAW 177
Query: 238 LSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLV 297
+SF+ DD + +G ++ A + A+GVNC P
Sbjct: 178 ISFTLNDDTRLRDGTPLSEAAA--ILAGLPNIAALGVNCCHP------------------ 217
Query: 298 VYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYD 357
+HI A + L +LL P++VYPNSGE+YD
Sbjct: 218 ------DHIPAA--------IEELSKLLT----------------GKPIIVYPNSGEQYD 247
Query: 358 AVNARWIDRDLC-EPVDKYVTDWLDEGVALVGGCCRTYAED 397
W L + W++ G ++GGCCRT
Sbjct: 248 PAGKTWHGPALSADSYSTLAKSWVEAGARIIGGCCRTGPAH 288
Score = 52.4 bits (126), Expect = 2e-07
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 510 DDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQL--KTENIPLVVYPN 567
DD + +G ++ A + A+GVNC P + IE+L P++VYPN
Sbjct: 184 DDTRLRDGTPLSEAAA--ILAGLPNIAALGVNCCHPDHIPAAIEELSKLLTGKPIIVYPN 241
Query: 568 SGERYD 573
SGE+YD
Sbjct: 242 SGEQYD 247
Score = 30.0 bits (68), Expect = 3.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 424 PLWSSYFLATAKDAVVQTHRDFIK 447
PLWS+ L + V H DF++
Sbjct: 31 PLWSALALVDEPEIVRNVHADFLR 54
Score = 29.6 bits (67), Expect = 3.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 480 WLDEGVALVGGCCRTYAED 498
W++ G ++GGCCRT
Sbjct: 270 WVEAGARIIGGCCRTGPAH 288
>gnl|CDD|217114 pfam02574, S-methyl_trans, Homocysteine S-methyltransferase. This
is a family of related homocysteine S-methyltransferases
enzymes: 5-methyltetrahydrofolate--homocysteine
S-methyltransferases also known EC:2.1.1.13;
Betaine--homocysteine S-methyltransferase (vitamin B12
dependent), EC:2.1.1.5; and Homocysteine
S-methyltransferase, EC:2.1.1.10.
Length = 303
Score = 175 bits (445), Expect = 4e-50
Identities = 101/398 (25%), Positives = 153/398 (38%), Gaps = 117/398 (29%)
Query: 4 VKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLA----TAKDAVVQTHRDFIKAGADIVMTN 59
V ++DGG ++L ++ D PLWS T + + + H+ +++AGADI+ TN
Sbjct: 1 VLVLDGGMGTELQRRGLNLAD--PLWSEGCNEELSITKPELIREIHKAYLEAGADIIETN 58
Query: 60 SYQASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVG 119
+YQA+ GF + L++ +L + + + + A
Sbjct: 59 TYQATPIGFAD-YGLEHLELRELNRRAAEIARAA-------------------------- 91
Query: 120 PYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYR 179
+Y T D L+AGS+GPYGA+ DGSEY
Sbjct: 92 ------------ADEYGN--------------TGDKR---LVAGSIGPYGAT-ADGSEYP 121
Query: 180 GDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLS 239
G Y VS + + HRP+++ L++ G D+L +ETIP EA+ R + E W+S
Sbjct: 122 GYY--GVSFEELKKAHRPQLEGLLDGGVDLLLLETIPDFLEAKAAVRAVEEVFEAPGWIS 179
Query: 240 FSCKDDKHISNGESFTQVART---CYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPL 296
F D + +G T T N ++ AVGVNC
Sbjct: 180 FPVFDSGTLVDGTGLTLSGATIEAALNSVQAEIDAVGVNCA------------------- 220
Query: 297 VVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERY 356
G I+ S T PL VYPNSGE Y
Sbjct: 221 -----LGPDIMDEILELLS------------------------LTARKPLSVYPNSGEPY 251
Query: 357 DAVNARWI-DRDLCEPVDKYVTDWLDEGVALVGGCCRT 393
DA + D P + +++ G ++GGCC T
Sbjct: 252 DAGKKEYDGTPDELAPSYWSLKEFVASGARIIGGCCGT 289
Score = 49.7 bits (119), Expect = 2e-06
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 510 DDKHISNGESFTQVART---CYNMNPDQLIAVGVNCVRPLMVSPLIEQL--KTENIPLVV 564
D + +G T T N ++ AVGVNC + I +L T PL V
Sbjct: 184 DSGTLVDGTGLTLSGATIEAALNSVQAEIDAVGVNCALGPDIMDEILELLSLTARKPLSV 243
Query: 565 YPNSGERYDF 574
YPNSGE YD
Sbjct: 244 YPNSGEPYDA 253
Score = 32.3 bits (74), Expect = 0.55
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 466 DRDLCEPVDKYVTDWLDEGVALVGGCCRT 494
D P + +++ G ++GGCC T
Sbjct: 261 TPDELAPSYWSLKEFVASGARIIGGCCGT 289
>gnl|CDD|236321 PRK08645, PRK08645, bifunctional homocysteine
S-methyltransferase/5,10-methylenetetrahydrofolate
reductase protein; Reviewed.
Length = 612
Score = 71.8 bits (177), Expect = 4e-13
Identities = 82/395 (20%), Positives = 134/395 (33%), Gaps = 146/395 (36%)
Query: 8 DGGFSSQLSTYVGDIIDGHPLWSSYFLA--TAKDAVVQTHRDFIKAGADIVMTNSYQASI 65
DG + L + G PL + + + +++ HR++I+AGAD++ TN++ A
Sbjct: 16 DGAMGTLLYSR------GVPLDRCFEELNLSHPELILRIHREYIEAGADVIQTNTFGA-- 67
Query: 66 GGFMEFLDLDYDSSYQLIKSSVDYVK-EAIALEATHARIRSDDPARDILIAGSVGPYGAS 124
+ +K + LE D ++I A
Sbjct: 68 ----------------------NRIKLKRYGLE---------DKVKEINRAA-------- 88
Query: 125 LRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYVE 184
V EA D+ +AG++GP G G
Sbjct: 89 -----------VRLAREAA------------GDDVYVAGTIGPIGGRGPLGD-------- 117
Query: 185 HVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWL----SF 240
+S + R +I AL+E G D L +ET +E + RE K L
Sbjct: 118 -ISLEEIRREFREQIDALLEEGVDGLLLETFYDLEELLLALEAARE----KTDLPIIAQV 172
Query: 241 SCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNC-VRPLMVSSLIEQL-KTENIPLVV 298
+ +D NG S + + D VG+NC + P + +E++ EN PL
Sbjct: 173 AFHEDGVTQNGTSLEEALKELVAAGAD---VVGLNCGLGPYHMLEALERIPIPENAPLSA 229
Query: 299 YPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDA 358
YPN+G +P + + VY + E Y A
Sbjct: 230 YPNAG--------LPEYVDGRY---------------------------VYSANPE-YFA 253
Query: 359 VNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRT 393
A +++++GV L+GGCC T
Sbjct: 254 EYAL---------------EFVEQGVRLIGGCCGT 273
Score = 29.4 bits (67), Expect = 5.8
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 475 KYVTDWLDEGVALVGGCCRT 494
+Y +++++GV L+GGCC T
Sbjct: 254 EYALEFVEQGVRLIGGCCGT 273
Score = 29.4 bits (67), Expect = 6.1
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 537 AVGVNC-VRPLMVSPLIEQL-KTENIPLVVYPNSG 569
VG+NC + P + +E++ EN PL YPN+G
Sbjct: 200 VVGLNCGLGPYHMLEALERIPIPENAPLSAYPNAG 234
>gnl|CDD|223719 COG0646, MetH, Methionine synthase I (cobalamin-dependent),
methyltransferase domain [Amino acid transport and
metabolism].
Length = 311
Score = 69.3 bits (170), Expect = 7e-13
Identities = 70/314 (22%), Positives = 118/314 (37%), Gaps = 84/314 (26%)
Query: 3 NVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLA--TAKDAVVQTHRDFIKAGADIVMTNS 60
V ++DG + L +Y D D L + L T D + HR +I+AGADI+ TN+
Sbjct: 15 RVLVLDGAMGTMLQSYGLDEADFRGLKGNNELLNLTKPDVIEAIHRAYIEAGADIIETNT 74
Query: 61 YQASIGGFMEFLDL-DY---DSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAG 116
+ A+ + L DY D Y++ + + + A A EA + +AG
Sbjct: 75 FGAT------TIKLADYGLEDKVYEINQKAARIARRA-ADEAG--------DPKPRFVAG 119
Query: 117 SVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGS 176
S+GP +L + +
Sbjct: 120 SIGPTNKTL-------------------------------------SISPDFAVTFD--- 139
Query: 177 EYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKA 236
+ VE E ++ L++ GAD++ IETI + A+ RE +
Sbjct: 140 ----ELVEAYREQ---------VEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELG 186
Query: 237 -----WLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNC-VRP-LMVSSLIEQL 289
+S + D +G++ + ++ PD AVG+NC + P M L E
Sbjct: 187 VRLPVMISGTITDSGRTLSGQTIEAFLNSLEHLGPD---AVGLNCALGPDEMRPHLRELS 243
Query: 290 KTENIPLVVYPNSG 303
+ + + VYPN+G
Sbjct: 244 RIADAFVSVYPNAG 257
Score = 29.6 bits (67), Expect = 4.3
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 536 IAVGVNC-VRP-LMVSPLIEQLKTENIPLVVYPNSG 569
AVG+NC + P M L E + + + VYPN+G
Sbjct: 222 DAVGLNCALGPDEMRPHLRELSRIADAFVSVYPNAG 257
>gnl|CDD|236045 PRK07534, PRK07534, methionine synthase I; Validated.
Length = 336
Score = 50.9 bits (122), Expect = 9e-07
Identities = 47/193 (24%), Positives = 69/193 (35%), Gaps = 72/193 (37%)
Query: 28 LWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQLIKSSV 87
LW+ D + H+ F+ AG+DI++TNS+ GG L L +
Sbjct: 38 LWNE----DHPDNITALHQGFVDAGSDIILTNSF----GGTAARLKL---------HDAQ 80
Query: 88 DYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEW 147
D V E A AR +D R +++AGSVGP G
Sbjct: 81 DRVHELNRAAAEIAREVADKAGRKVIVAGSVGPTG------------------------- 115
Query: 148 HRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGA 207
+I+ P GA ++ A E + + L GA
Sbjct: 116 ----------EIME-----PMGA---------------LTHALAVEAFHEQAEGLKAGGA 145
Query: 208 DILAIETIPASKE 220
D+L +ETI A +E
Sbjct: 146 DVLWVETISAPEE 158
Score = 42.0 bits (99), Expect = 6e-04
Identities = 65/269 (24%), Positives = 96/269 (35%), Gaps = 72/269 (26%)
Query: 145 AEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVE 204
AE R + D R +++AGSVGP G + + ++ A E + + L
Sbjct: 91 AEIAREVADKAGRKVIVAGSVGPTGEIMEP--------MGALTHALAVEAFHEQAEGLKA 142
Query: 205 AGADILAIETIP------ASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVA 258
GAD+L +ETI A+ EA L + W SF
Sbjct: 143 GGADVLWVETISAPEEIRAAAEAAKLAGM--PWCGTM-----------------SFDTAG 183
Query: 259 RTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEA 318
RT + P L + L+E+L PL N G + AS
Sbjct: 184 RTMMGLTPADL-------------ADLVEKL--GEPPLAFGANCG--------VGASD-- 218
Query: 319 QMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSG-ERYDAVNARWIDRDLCEPVDKYVT 377
LLR L F+ + P++ N+G +Y V+ E + +Y
Sbjct: 219 -----LLR------TVLGFTAQGPERPIIAKGNAGIPKY--VDGHIHYDGTPELMAEYAV 265
Query: 378 DWLDEGVALVGGCCRTYAEDTLHMKHRLD 406
D G ++GGCC T E M+ LD
Sbjct: 266 LARDAGARIIGGCCGTMPEHLAAMRAALD 294
Score = 28.9 bits (65), Expect = 7.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 482 DEGVALVGGCCRTYAEDTLHMKHRLD 507
D G ++GGCC T E M+ LD
Sbjct: 269 DAGARIIGGCCGTMPEHLAAMRAALD 294
>gnl|CDD|233714 TIGR02082, metH, 5-methyltetrahydrofolate--homocysteine
methyltransferase. This family represents
5-methyltetrahydrofolate--homocysteine methyltransferase
(EC 2.1.1.13), one of at least three different enzymes
able to convert homocysteine to methionine by
transferring a methyl group on to the sulfur atom. It is
also called the vitamin B12(or cobalamine)-dependent
methionine synthase. Other methionine synthases include
5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase (MetE, EC 2.1.1.14, the
cobalamin-independent methionine synthase) and
betaine-homocysteine methyltransferase [Amino acid
biosynthesis, Aspartate family].
Length = 1178
Score = 44.4 bits (105), Expect = 2e-04
Identities = 33/180 (18%), Positives = 62/180 (34%), Gaps = 56/180 (31%)
Query: 36 TAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIA 95
T + + HR + +AGADI+ TN++ ++ DYD
Sbjct: 47 TKPEVIATIHRAYFEAGADIIETNTFNST-----TISQADYDLE---------------- 85
Query: 96 LEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDP 155
D D+ G+ ++ A E+ T P
Sbjct: 86 -----------DLIYDLNFKGA--------------------KLARAVADEF----TLTP 110
Query: 156 ARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETI 215
+ +AGS+GP + + +V+ + + + + + L++ G D+L IET
Sbjct: 111 EKPRFVAGSMGPTNKTATLSPDVERPGFRNVTYDELVDAYTEQAKGLLDGGVDLLLIETC 170
Score = 29.4 bits (66), Expect = 7.0
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 340 KTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEG-VALVGGCCRT 393
+ + +PN+G NA + + K + D+ EG + +VGGCC T
Sbjct: 250 EHAEAYVSCHPNAG----LPNAFGEYDLTPDELAKALADFAAEGGLNIVGGCCGT 300
>gnl|CDD|236539 PRK09490, metH, B12-dependent methionine synthase; Provisional.
Length = 1229
Score = 40.5 bits (96), Expect = 0.003
Identities = 43/190 (22%), Positives = 68/190 (35%), Gaps = 75/190 (39%)
Query: 36 TAKDAVVQTHRDFIKAGADIVMTNSYQA-SIGGFMEFLDLDYDSSYQLIKSSVDYVKEAI 94
T D + HR +++AGADI+ TN++ A +I DY V E +
Sbjct: 62 TQPDVIEAIHRAYLEAGADIIETNTFNATTIA--QA----DYGME--------SLVYE-L 106
Query: 95 ALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDD 154
A AR+ AR+ ++ A+
Sbjct: 107 NFAA--ARL-----ARE---------------------------AADEWTAK-------T 125
Query: 155 PARDILIAGSVGPYG--ASLR---DGSEYRG----DYVEHVSEATMAEWHRPRIQALVEA 205
P + +AG +GP AS+ + +R + V E T + L+E
Sbjct: 126 PDKPRFVAGVLGPTNRTASISPDVNDPGFRNVTFDELVAAYREQT---------RGLIEG 176
Query: 206 GADILAIETI 215
GAD++ IETI
Sbjct: 177 GADLILIETI 186
>gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal
TPP binding domain.
Length = 151
Score = 31.4 bits (72), Expect = 0.65
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 55 IVMTNSYQASIGGFME-FLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDIL 113
+V+ N G F Y VD+ K A A A AR+ S + + L
Sbjct: 78 VVLNNGGYGMTRGQQTPFGGGRYSGPDGKDLPPVDFAKLAEAYGAKGARVESPEELEEAL 137
>gnl|CDD|133056 cd06434, GT2_HAS, Hyaluronan synthases catalyze polymerization of
hyaluronan. Hyaluronan synthases (HASs) are
bi-functional glycosyltransferases that catalyze
polymerization of hyaluronan. HASs transfer both GlcUA
and GlcNAc in beta-(1,3) and beta-(1,4) linkages,
respectively to the hyaluronan chain using UDP-GlcNAc
and UDP-GlcUA as substrates. HA is made as a free
glycan, not attached to a protein or lipid. HASs do not
need a primer for HA synthesis; they initiate HA
biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA,
and Mg2+. Hyaluronan (HA) is a linear
heteropolysaccharide composed of (1-3)-linked
beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can
be found in vertebrates and a few microbes and is
typically on the cell surface or in the extracellular
space, but is also found inside mammalian cells.
Hyaluronan has several physiochemical and biological
functions such as space filling, lubrication, and
providing a hydrated matrix through which cells can
migrate.
Length = 235
Score = 31.1 bits (71), Expect = 1.4
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 516 NGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQLKTENIPLVVYPNSGERY 572
+ + F + R+ P ++I V P +S L + +K I ++ P+ G+R
Sbjct: 12 DPDVFRECLRSILRQKPLEIIVVTDGDDEPY-LSILSQTVKYGGIFVITVPHPGKRR 67
Score = 29.9 bits (68), Expect = 3.4
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 250 NGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYP 300
+ + F + R+ P ++I V P +S L + +K + V
Sbjct: 12 DPDVFRECLRSILRQKPLEIIVVTDGDDEPY-LSILSQTVK--YGGIFVIT 59
>gnl|CDD|219546 pfam07739, TipAS, TipAS antibiotic-recognition domain. This domain
is found at the C-terminus of some MerR family
transcription factors. The domain has an alpha-helical
globin-like fold. The family includes Mta a central
regulator of multidrug resistance in Bacillus subtilis.
Length = 118
Score = 29.6 bits (67), Expect = 1.8
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 168 YGASLRD--GSEYRGDYVEHVSEATMAEWHR--PRIQALVEAGADILAIETIPASKEAQM 223
Y R+ G E + E + +W L A + P S+E Q
Sbjct: 2 YEEEARERYGDEAYQESEEKTKNLSKEDWEEIQEEWDELFAELAAAMDEGVDPDSEEVQE 61
Query: 224 LCRLLREW 231
L R+W
Sbjct: 62 LAERHRDW 69
>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase;
Validated.
Length = 407
Score = 31.0 bits (71), Expect = 2.0
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 184 EHVSEATMAEWHRPRIQALVEAGADILAIET------IPAS 218
E V+EAT+A WH+ + V+ ++ IET +PA
Sbjct: 12 ESVTEATIATWHK-KPGDAVKRDEVLVEIETDKVVLEVPAP 51
>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex
dihydrolipoamide succinyltransferase (E2 component).
This model describes the TCA cycle 2-oxoglutarate system
E2 component, dihydrolipoamide succinyltransferase. It
is closely related to the pyruvate dehydrogenase E2
component, dihydrolipoamide acetyltransferase. The seed
for this model includes mitochondrial and Gram-negative
bacterial forms. Mycobacterial candidates are highly
derived, differ in having and extra copy of the
lipoyl-binding domain at the N-terminus. They score
below the trusted cutoff, but above the noise cutoff and
above all examples of dihydrolipoamide acetyltransferase
[Energy metabolism, TCA cycle].
Length = 403
Score = 30.1 bits (68), Expect = 3.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 134 DYVEHVSEATMAEWHRLITDDPARDILIA 162
+ E ++E T+AEWH+ + D RD I
Sbjct: 7 ELAESITEGTVAEWHKKVGDTVKRDENIV 35
Score = 28.9 bits (65), Expect = 8.6
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 181 DYVEHVSEATMAEWHRPRIQALVEAGADILAIET 214
+ E ++E T+AEWH+ ++ V+ +I+ IET
Sbjct: 7 ELAESITEGTVAEWHK-KVGDTVKRDENIVEIET 39
>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 502
Score = 30.0 bits (68), Expect = 3.7
Identities = 11/17 (64%), Positives = 15/17 (88%)
Query: 198 RIQALVEAGADILAIET 214
R+ ALVEAGAD+L I++
Sbjct: 246 RVPALVEAGADVLCIDS 262
>gnl|CDD|216571 pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase.
This family includes a region of the large protein
pyruvate-flavodoxin oxidoreductase and the whole
pyruvate ferredoxin oxidoreductase gamma subunit
protein. It is not known whether the gamma subunit has a
catalytic or regulatory role. Pyruvate oxidoreductase
(POR) catalyzes the final step in the fermentation of
carbohydrates in anaerobic microorganisms. This involves
the oxidative decarboxylation of pyruvate with the
participation of thiamine followed by the transfer of an
acetyl moiety to coenzyme A for the synthesis of
acetyl-CoA. The family also includes pyruvate flavodoxin
oxidoreductase as encoded by the nifJ gene in
cyanobacterium which is required for growth on molecular
nitrogen when iron is limited.
Length = 129
Score = 28.7 bits (65), Expect = 4.6
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 40 AVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIAL 96
+ H D +K G I++ N+ +G L L ++ + I+ ++ I L
Sbjct: 67 ETLDRHLDGLKPGGIIIVANT--VMLGALAALLGLPLEALEEAIREQFGKKEKVIEL 121
>gnl|CDD|132463 TIGR03422, mito_frataxin, frataxin. Frataxin is a mitochondrial
protein, mutation of which leads to the disease
Friedreich's ataxia. Its orthologs are widely
distributed in the bacteria, associated with the ISC
system for iron-sulfur cluster assembly, and designated
CyaY. This exception-type model allows those examples of
frataxin per se that score above the trusted cutoff to
the CyaY equivalog-type model (TIGR03421) to be named
appropriately.
Length = 97
Score = 28.0 bits (63), Expect = 4.9
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 14/41 (34%)
Query: 329 PNQKAWLSFSCKTENIPLVVYPNSG-ERYDAVNARWI-DRD 367
PN++ WLS P SG +RYD VN WI RD
Sbjct: 55 PNKQIWLS------------SPVSGPKRYDYVNGEWIYLRD 83
>gnl|CDD|234390 TIGR03904, SAM_YgiQ, uncharacterized radical SAM protein YgiQ.
Members of this family are fairly widespread
uncharacterized radical SAM family proteins, many of
which are designated YgiQ [Unknown function, Enzymes of
unknown specificity].
Length = 559
Score = 29.8 bits (68), Expect = 4.9
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 17/67 (25%)
Query: 527 CYNMNPDQLIAVGVNCVRPLMVSPLIEQL-KTENIPLV--VYPNSGERYDFHLADEKNNC 583
C N+ D SP +E L K +P V V+ SG RYD LAD+ +
Sbjct: 381 CPNLKVDH--------------SPYLELLRKLRKLPGVKKVFIRSGIRYDLLLADKDDTY 426
Query: 584 VKSDVTH 590
++ V H
Sbjct: 427 LRELVRH 433
>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase;
Reviewed.
Length = 486
Score = 29.8 bits (68), Expect = 5.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 198 RIQALVEAGADILAIET 214
R +ALVEAG D+L ++T
Sbjct: 232 RAEALVEAGVDVLVVDT 248
>gnl|CDD|225311 COG2513, PrpB, PEP phosphonomutase and related enzymes
[Carbohydrate transport and metabolism].
Length = 289
Score = 29.2 bits (66), Expect = 5.6
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 198 RIQALVEAGADILAIETIPASKEAQMLCRLLREWP 232
R QA VEAGAD + A + + + P
Sbjct: 171 RAQAYVEAGADAI---FPEALTDLEEIRAFAEAVP 202
>gnl|CDD|119340 cd00377, ICL_PEPM, Members of the ICL/PEPM enzyme family catalyze
either P-C or C-C bond formation/cleavage. Known members
are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate
hydrolase (PPH), carboxyPEP mutase (CPEP mutase),
oxaloacetate hydrolase (OAH), isocitrate lyase (ICL),
and 2-methylisocitrate lyase (MICL). Isocitrate lyase
(ICL) catalyzes the conversion of isocitrate to
succinate and glyoxylate, the first committed step in
the glyoxylate pathway. This carbon-conserving pathway
is present in most prokaryotes, lower eukaryotes and
plants, but has not been observed in vertebrates. PEP
mutase (PEPM) turns phosphoenolpyruvate (PEP) into
phosphonopyruvate (P-pyr), an important intermediate in
the formation of organophosphonates, which function as
antibiotics or play a role in pathogenesis or signaling.
P-pyr can be hydrolyzed by phosphonopyruvate hydrolase
(PPH) to from pyruvate and phosphate. Oxaloacetate
acetylhydrolase (OAH) catalyzes the hydrolytic cleavage
of oxaloacetate to form acetate and oxalate, an
important pathway to produce oxalate in filamentous
fungi. 2-methylisocitrate lyase (MICL) cleaves
2-methylisocitrate to pyruvate and succinate, part of
the methylcitrate cycle for the alpha-oxidation of
propionate.
Length = 243
Score = 29.0 bits (66), Expect = 5.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 198 RIQALVEAGADILAIETIPASKEAQMLCR 226
R +A EAGAD + +E + +E +
Sbjct: 165 RAKAYAEAGADGIFVEGLKDPEEIRAFAE 193
>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent
dehydrogenases [Amino acid transport and metabolism /
General function prediction only].
Length = 350
Score = 29.3 bits (66), Expect = 5.8
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 66 GGFMEFLDLDYDSSYQLIKSSVDYVKEAIAL-------EATHARIRSDDPARDILIAGSV 118
GGF E++ + D + + +D EA AL HA + P +++ G+
Sbjct: 121 GGFAEYVRVPADFNLAKLPDGIDE--EAAALTEPLATAYHGHAERAAVRPGGTVVVVGA- 177
Query: 119 GPYG 122
GP G
Sbjct: 178 GPIG 181
>gnl|CDD|189027 cd09857, PIN_EXO1, PIN domain of Exonuclease-1, a
structure-specific, divalent-metal-ion dependent, 5'
nuclease and homologs. Exonuclease-1 (EXO1) is involved
in multiple, eukaryotic DNA metabolic pathways,
including DNA replication processes (5' flap DNA
endonuclease activity and double stranded DNA
5'-exonuclease activity), DNA repair processes (DNA
mismatch repair (MMR) and post-replication repair
(PRR)), recombination, and telomere integrity. EXO1
functions in the MMS2 error-free branch of the PRR
pathway in the maintenance and repair of stalled
replication forks. Studies also suggest that EXO1 plays
both structural and catalytic roles during MMR-mediated
mutation avoidance. EXO1 belongs to the FEN1-EXO1-like
family of structure-specific, 5' nucleases. These
nucleases contain a PIN (PilT N terminus) domain with a
helical arch/clamp region (I domain) of variable length
(approximately 43 residues in EXO1 PIN domains) and a
H3TH (helix-3-turn-helix) domain, an atypical
helix-hairpin-helix-2-like region. Both the H3TH domain
(not included here) and the helical arch/clamp region
are involved in DNA binding. Nucleases within this group
also have a carboxylate-rich active site that is
involved in binding essential divalent metal ion
cofactors (Mg2+/Mn2+). EXO1 nucleases also have
C-terminal Mlh1- and Msh2-binding domains which allow
interaction with MMR and PRR proteins, respectively.
Length = 210
Score = 29.0 bits (66), Expect = 5.9
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 543 VRPLMVSPLIEQLKTENIPLVVYP 566
+ P M LI+ L+ E + +V P
Sbjct: 125 ITPEMAHELIKALRKEGVEYIVAP 148
Score = 29.0 bits (66), Expect = 6.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 277 VRPLMVSSLIEQLKTENIPLVVYP 300
+ P M LI+ L+ E + +V P
Sbjct: 125 ITPEMAHELIKALRKEGVEYIVAP 148
>gnl|CDD|109982 pfam00947, Pico_P2A, Picornavirus core protein 2A. This protein is
a protease, involved in cleavage of the polyprotein.
Length = 127
Score = 28.1 bits (63), Expect = 6.0
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 142 ATMAEWHRLITDDPARDILIA 162
AT +WH + D RD+L+
Sbjct: 5 ATHEDWHNSVWVDYNRDLLVT 25
>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional.
Length = 572
Score = 29.1 bits (65), Expect = 6.7
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 34 LATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQLIKSSVDYV 90
LA ++ +Q H+D +K GAD+ + + GG +DYD +L++ VD +
Sbjct: 90 LAPTRELAIQIHKDAVKFGADLGL--RFALVYGG------VDYDKQRELLQQGVDVI 138
>gnl|CDD|240128 cd04824, eu_ALAD_PBGS_cysteine_rich, Porphobilinogen synthase
(PBGS), which is also called delta-aminolevulinic acid
dehydratase (ALAD), catalyzes the condensation of two
5-aminolevulinic acid (ALA) molecules to form the
pyrrole porphobilinogen (PBG), which is the second step
in the biosynthesis of tetrapyrroles, such as heme,
vitamin B12 and chlorophyll. This reaction involves the
formation of a Schiff base link between the substrate
and the enzyme. PBGSs are metalloenzymes, some of which
have a second, allosteric metal binding site, beside the
metal ion binding site in their active site. Although
PBGS is a family of homologous enzymes, its metal ion
utilization at catalytic site varies between zinc and
magnesium and/or potassium. PBGS can be classified into
two groups based on differences in their active site
metal binding site. The eukaryotic PBGSs represented by
this model, which contain a cysteine-rich zinc binding
motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their
activity, they do not contain an additional allosteric
metal binding site and do not bind magnesium.
Length = 320
Score = 29.3 bits (66), Expect = 6.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 38 KDAVVQTHRDFIKAGADIVMT 58
K AV++ F +AGADI++T
Sbjct: 290 KRAVLEAMTGFRRAGADIIIT 310
>gnl|CDD|237417 PRK13533, PRK13533, 7-cyano-7-deazaguanine
tRNA-ribosyltransferase; Provisional.
Length = 487
Score = 29.1 bits (66), Expect = 7.6
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 19/61 (31%)
Query: 41 VVQTHRDFI------KAGADIVMTNSY--------QASIGGFMEFLDLD----YDS-SYQ 81
V+ ++ I + GA+I++TNSY +A G + L D DS SYQ
Sbjct: 34 VINPNKQEISPDELKEFGAEILITNSYIIYRSLREKALEKGLHKLLGFDGPIMTDSGSYQ 93
Query: 82 L 82
L
Sbjct: 94 L 94
>gnl|CDD|232937 TIGR00358, 3_prime_RNase, VacB and RNase II family 3'-5'
exoribonucleases. This model is defined to identify a
pair of paralogous 3-prime exoribonucleases in E. coli,
plus the set of proteins apparently orthologous to one
or the other in other eubacteria. VacB was characterized
originally as required for the expression of virulence
genes, but is now recognized as the exoribonuclease
RNase R (Rnr). Its paralog in E. coli and H. influenzae
is designated exoribonuclease II (Rnb). Both are
involved in the degradation of mRNA, and consequently
have strong pleiotropic effects that may be difficult to
disentangle. Both these proteins share domain-level
similarity (RNB, S1) with a considerable number of other
proteins, and full-length similarity scoring below the
trusted cutoff to proteins associated with various
phenotypes but uncertain biochemistry; it may be that
these latter proteins are also 3-prime exoribonucleases
[Transcription, Degradation of RNA].
Length = 654
Score = 28.9 bits (65), Expect = 8.2
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 213 ETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQ 256
+ K L + L EW H++ + F + K I + E
Sbjct: 336 TLVEQLKALHQLSQALGEWRHKRGLIDFEHPETKFIVDEEGRVI 379
>gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus. This family consists of the
C-terminal region of several eukaryotic and archaeal
RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin
or TIP49b) proteins. The N-terminal domain contains the
pfam00004 domain. In zebrafish, the liebeskummer (lik)
mutation, causes development of hyperplastic embryonic
hearts. lik encodes Reptin, a component of a
DNA-stimulated ATPase complex. Beta-catenin and Pontin,
a DNA-stimulated ATPase that is often part of complexes
with Reptin, are in the same genetic pathways. The
Reptin/Pontin ratio serves to regulate heart growth
during development, at least in part via the
beta-catenin pathway. TBP-interacting protein 49 (TIP49)
was originally identified as a TBP-binding protein, and
two related proteins are encoded by individual genes,
tip49a and b. Although the function of this gene family
has not been elucidated, they are supposed to play a
critical role in nuclear events because they interact
with various kinds of nuclear factors and have DNA
helicase activities.TIP49a has been suggested to act as
an autoantigen in some patients with autoimmune
diseases.
Length = 395
Score = 28.8 bits (65), Expect = 8.3
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 449 SQTNDFLRDYNSPNLWIDRDLCEPVDKYVTDWLDEGVA-LVGG 490
++ L ++ I +L E ++K V W++EG A +V G
Sbjct: 235 ARPQGILSLFSPKKGEITSELREEINKKVNKWIEEGKAEIVPG 277
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 29.0 bits (66), Expect = 8.3
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 400 HMKHRLDDWVSGLS 413
HM+ RL++W+ GL+
Sbjct: 382 HMRVRLENWIEGLN 395
>gnl|CDD|216010 pfam00588, SpoU_methylase, SpoU rRNA Methylase family. This family
of proteins probably use S-AdoMet.
Length = 142
Score = 27.9 bits (63), Expect = 9.3
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 21/75 (28%)
Query: 257 VARTCYNMNPDQLIAVGVNCVRPLM------------------VSSL---IEQLKTENIP 295
+ART D LI V C P V +L ++ LK
Sbjct: 18 IARTAAAFGADGLILVEPRCADPYNPKAIRASAGALFHLPLVIVDNLEEALKDLKEAGFW 77
Query: 296 LVVYPNSGEHILAIE 310
++ G+ + I+
Sbjct: 78 IIATSLKGKPLYEID 92
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.422
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,810,766
Number of extensions: 3021234
Number of successful extensions: 3061
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3019
Number of HSP's successfully gapped: 78
Length of query: 591
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 489
Effective length of database: 6,413,494
Effective search space: 3136198566
Effective search space used: 3136198566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.6 bits)