RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17603
(591 letters)
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism,
homocysteinemia, zinc, thiol alkyl transfer; HET: CBH
CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A*
1umy_A
Length = 406
Score = 104 bits (261), Expect = 3e-24
Identities = 62/414 (14%), Positives = 109/414 (26%), Gaps = 129/414 (31%)
Query: 4 VKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQA 63
+ + DGGF L G + G W+ +AV Q HR+F++AG++++ T ++ A
Sbjct: 22 IVIGDGGFVFALEKR-GYVKAGP--WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYA 78
Query: 64 SIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARI-RSDDPARDILIAGSVGPYG 122
S + + + + A A I R D L+AG V
Sbjct: 79 SEDKLE-----NRGNYVLE-----KISGQEVNEAA--ADIARQVADEGDALVAGGVSQTP 126
Query: 123 ASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDY 182
Y ++ + +
Sbjct: 127 -------SYLSA----------------KSETEVKKV----------------------- 140
Query: 183 VEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREW--PHQKAWLSF 240
+++ ++ D L E +EA L P +
Sbjct: 141 ------------FLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKP---VAATM 185
Query: 241 SCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVR-PLMVSSLIEQLKTE------N 293
+ + + G + A +GVNC P + ++ +K
Sbjct: 186 AIGPEGDLH-GVPPGEAAVRLVKAGAS---IIGVNCHFDPTISLKTVKLMKEGLEAAQLK 241
Query: 294 IPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSG 353
L+ P + A K I L +P
Sbjct: 242 AHLMSQPLAYHTPDAN------------------------------KQGFIDLPEFPFGL 271
Query: 354 ERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDD 407
E A + KY + + GV +GGCC + L
Sbjct: 272 EPRVATR---------WDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAP 316
Score = 35.6 bits (82), Expect = 0.046
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 475 KYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDD 508
KY + + GV +GGCC + L
Sbjct: 283 KYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAP 316
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase;
methionine, cobalamin, vitamin B12; 1.70A {Thermotoga
maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A
1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Length = 566
Score = 68.7 bits (169), Expect = 2e-12
Identities = 64/372 (17%), Positives = 114/372 (30%), Gaps = 151/372 (40%)
Query: 36 TAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIA 95
A D V++ HR +I++G+D+++TN++ A+ + L+ D +++++V + A
Sbjct: 41 KAPDVVLKVHRSYIESGSDVILTNTFGATRMKLRKH-GLE-DKLDPIVRNAVRIARRA-- 96
Query: 96 LEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDP 155
A + L+ G +GP G P
Sbjct: 97 -------------AGEKLVFGDIGPTGELP----------------------------YP 115
Query: 156 ARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETI 215
+ + + E V + +VE G D + ET
Sbjct: 116 LGST-------LF-EEFYEN------FRETV-------------EIMVEEGVDGIIFETF 148
Query: 216 PASKEAQMLCRLLREWPHQKAWLSFSCKDDKH----IS------NGESFT-QVARTCYN- 263
E KA + + ++ I+ G S T
Sbjct: 149 SDILEL-------------KAAV-LAAREVSRDVFLIAHMTFDEKGRSLTGTDPANFAIT 194
Query: 264 MNPDQLIAVGVNC-VRPLMVSSLIEQL-KTENIPLVVYPNSGEHILAIETIPASKEAQML 321
+ + A+G+NC + P + + ++L + + LVV PN+G
Sbjct: 195 FDELDIDALGINCSLGPEEILPIFQELSQYTDKFLVVEPNAG------------------ 236
Query: 322 CRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLD 381
N K VYP + A ID + +
Sbjct: 237 ---KPIVENGKT--------------VYPLKPHDF----AVHID------------SYYE 263
Query: 382 EGVALVGGCCRT 393
GV + GGCC T
Sbjct: 264 LGVNIFGGCCGT 275
Score = 33.6 bits (78), Expect = 0.19
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 530 MNPDQLIAVGVNC-VRPLMVSPLIEQL-KTENIPLVVYPNSG 569
+ + A+G+NC + P + P+ ++L + + LVV PN+G
Sbjct: 195 FDELDIDALGINCSLGPEEILPIFQELSQYTDKFLVVEPNAG 236
Score = 33.3 bits (77), Expect = 0.24
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 475 KYVTDWLDEGVALVGGCCRT 494
++ + + GV + GGCC T
Sbjct: 256 VHIDSYYELGVNIFGGCCGT 275
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.4 bits (161), Expect = 2e-11
Identities = 101/643 (15%), Positives = 177/643 (27%), Gaps = 220/643 (34%)
Query: 37 AKDAVVQTHRDFIKAGADIVM---TNSYQASIGGFME-FLDLDYDSSYQLIKSSVDYVKE 92
+KDAV T R F ++ Q F+E L ++Y ++
Sbjct: 57 SKDAVSGTLRLF-----WTLLSKQEEMVQK----FVEEVLRINYK-----------FLMS 96
Query: 93 AIALE--ATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYV---EHVSEATMAEW 147
I E R RD L D + V + + A
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRL-----------YNDNQVFAKYNVSRLQPYLKLRQA-- 143
Query: 148 HRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSE-----ATMAEWHRPR---- 198
L+ PA+++LI G +G G + V+ + + + P
Sbjct: 144 --LLELRPAKNVLIDGVLG-SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 199 -IQAL-------VEAGADILAIETIPASKEAQMLCRLLREWPHQKA-------W------ 237
+Q L + +D + + L RLL+ P++
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 238 -LSFSCK-----DDKHISNGESFTQVARTCYN-----MNPDQLIAVGVNCVRPLMVSSLI 286
+ SCK K +++ S + + PD++ ++ + + L
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLP 319
Query: 287 EQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQ-KAWLSFSC-KTENI 344
++ T N P + ++ +R+ W +C K I
Sbjct: 320 REVLTTN-PRRL--------------------SIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 345 ---------P---------LVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLD---EG 383
P L V+P S + I P W D
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPS------AH---I------PTILLSLIWFDVIKSD 403
Query: 384 VALVGGCCRTYAEDTLHMKHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAK-DAVVQTH 442
V +V + LH ++ + + I Y K + H
Sbjct: 404 VMVV--------VNKLHKYSLVEKQPKESTISIPSI---------YLELKVKLENEYALH 446
Query: 443 RDFIKGSQTNDFLRDYNSPNLWIDRDLCEP-VDKYVTDWLDEGVALVGGCCRTYAEDTLH 501
R + YN P + DL P +D+Y + G + H
Sbjct: 447 RSIV---------DHYNIPKTFDSDDLIPPYLDQYFYSHI--G----------H-----H 480
Query: 502 MKHRLDDWDDKHISNGESFTQVARTCYNMN--PDQLIAVGVNCVRPLMVSPLIEQLK--- 556
+ K+I + E T + ++ + ++QLK
Sbjct: 481 L---------KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 557 ---TENIPLVVYPNSGERY-----DFHLADEKNNCVKSDVTHL 591
+N P ER DF L + N + S T L
Sbjct: 532 PYICDNDPKY------ERLVNAILDF-LPKIEENLICSKYTDL 567
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.9 bits (155), Expect = 1e-10
Identities = 90/552 (16%), Positives = 161/552 (29%), Gaps = 206/552 (37%)
Query: 11 FSSQLSTYVGDII-DGHP-----LWSSY--FLA--------TAKDAVVQT-----HRDFI 49
F+ L D P L + +++ D V+ ++
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL 96
Query: 50 KAGADIVMTNSYQASIGGFMEFLDLDYDSSYQLIKS---SVDYVKEAIALEATHARIRS- 105
+ G DI ++ A ++ D + +LIK+ + K ++ A R+
Sbjct: 97 E-GNDI---HALAAK---LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 106 -DDPARDILIA-----GSVGPYGASLRD-GSEYR---GDYVEHVSEA------------- 142
+ A+ L+A G+ Y LRD Y GD ++ +E
Sbjct: 150 GEGNAQ--LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 143 ------TMAEWHRLITDDPARDILIAGSV-GP---------YGASLRDGSEYRGDYVEHV 186
+ EW ++ P +D L++ + P Y + + +
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK------------L 255
Query: 187 SEATMAEWHRPRIQALVEAGADILAIETIPASKE--------AQML-------CRLLREW 231
T E R ++ ++ I + + + R +
Sbjct: 256 LGFTPGE-LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 232 PHQKAWLS----------------FSCKDDKHISNGESFTQVARTCYNMNPDQLIAVG-V 274
P+ S S + ++ + V +T ++ + + + V
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISN---LTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Query: 275 NCVRPLMVS----SL------IEQLKTEN------IP------------LVVY-P-NSGE 304
N + L+VS SL + + K + IP L V P +S
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS-- 429
Query: 305 HILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARW- 363
H+L PA + L++ +SF+ K IP VY +D + R
Sbjct: 430 HLLV----PA--SDLINKDLVKNN------VSFNAKDIQIP--VYDT----FDGSDLRVL 471
Query: 364 ---IDRDLC-----EPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMK--HRLD---DWVS 410
I + PV W E T K H LD S
Sbjct: 472 SGSISERIVDCIIRLPVK-----W----------------ETTTQFKATHILDFGPGGAS 510
Query: 411 GLSTYVGDIIDG 422
GL DG
Sbjct: 511 GLGVLTHRNKDG 522
Score = 53.1 bits (127), Expect = 2e-07
Identities = 51/322 (15%), Positives = 92/322 (28%), Gaps = 125/322 (38%)
Query: 62 QAS--IG-GFMEFLDLDYDSSYQLIKSSVD----YVKEAIALEATHARIRSDDPARDILI 114
Q S G G M+ Y +S + + + + K+ I ++P +
Sbjct: 1624 QGSQEQGMG-MDL----YKTS-KAAQDVWNRADNHFKDTYGFSILD--IVINNPVNLTIH 1675
Query: 115 AGSVGPYGASLR------------DGSEYRGDYVEHVSEAT------------------- 143
G G G +R DG + ++E +
Sbjct: 1676 FG--GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 144 -------MAEWHRL----ITDDPARDILIAG-SVGPYGA--------SLRDGSE---YRG 180
A + L + A AG S+G Y A S+ E YRG
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADA---TFAGHSLGEYAALASLADVMSIESLVEVVFYRG 1790
Query: 181 DYVEHVSEATMAEWHRPRIQAL----VEAGADILAIETI--PASKEAQMLCRLLREWPHQ 234
++ + A+ V A A++ + K L E
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV----E---- 1842
Query: 235 KAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVG----VNCVRPLMVSSLIEQLK 290
I N YN+ Q +A G ++ V ++++ +K
Sbjct: 1843 -------------IVN-----------YNVENQQYVAAGDLRALDTV-----TNVLNFIK 1873
Query: 291 TENIPLVVYPNSGEHILAIETI 312
+ I ++ S L++E +
Sbjct: 1874 LQKIDIIELQKS----LSLEEV 1891
Score = 51.6 bits (123), Expect = 7e-07
Identities = 73/545 (13%), Positives = 156/545 (28%), Gaps = 187/545 (34%)
Query: 99 THARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARD 158
+H + +L+ + + L++ + + + E T D+P
Sbjct: 12 SHGSLEHV-----LLVPTASFFIASQLQE------QFNKILPEPTEGFAA---DDEPTTP 57
Query: 159 I-LIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRP-----RIQALVEAGADILAI 212
L+ +G Y +SL + S+ G + + V + E+ I AL A +L
Sbjct: 58 AELVGKFLG-YVSSLVEPSK-VGQFDQ-VLNLCLTEFENCYLEGNDIHALA---AKLLQE 111
Query: 213 ETIPASK---------EAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYN 263
K A+++ + + A + + G +
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF-------RAVGEGNA---------- 154
Query: 264 MNPDQLIAV----GVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILA--IETIPASKE 317
QL+A+ G E+L+ +Y + ++ I+
Sbjct: 155 ----QLVAIFGGQGNT-------DDYFEELRD------LY-QTYHVLVGDLIKFS----- 191
Query: 318 AQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVT 377
A+ L L+R + + V+ + + W++ P +
Sbjct: 192 AETLSELIRTTLDAE--------------KVFTQG---LNIL--EWLE----NPSNTPDK 228
Query: 378 DWLDE------GVALVGGCCRTYAEDTLHMKH-RLDDWVSGLSTYVGDIIDGHPL----- 425
D+L + ++ L L ++ G + + ++ +
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 426 WSSYFLATAKDAV-------VQTHRDFIKGSQTNDFLRDYNSPNLWIDRDLCEPVDKYVT 478
W S F + + A+ V+ + + PN + P +
Sbjct: 289 WES-FFVSVRKAITVLFFIGVRCYEAY---------------PNTSL-----PP--SILE 325
Query: 479 DWLD--EGVA----LVGGCCRTYAEDTL-HMKHRLDDWDDKHIS----NGESFTQVARTC 527
D L+ EGV + + +D + L K + NG
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP--AGKQVEISLVNG-------AKN 376
Query: 528 YNM--NPDQLIAVGVNCVRPLMVSPLIEQLKTENIPLVVY----PNSGERYD-----FH- 575
+ P L + + +R ++Q + IP + R+ FH
Sbjct: 377 LVVSGPPQSLYGLNLT-LRKAKAPSGLDQSR---IP---FSERKLKFSNRFLPVASPFHS 429
Query: 576 --LAD 578
L
Sbjct: 430 HLLVP 434
Score = 32.3 bits (73), Expect = 0.53
Identities = 55/322 (17%), Positives = 92/322 (28%), Gaps = 130/322 (40%)
Query: 175 GSEYRG---D-YVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLRE 230
GS+ +G D Y S+A W+R AD +T S + ++
Sbjct: 1625 GSQEQGMGMDLYKT--SKAAQDVWNR----------ADNHFKDTYGFS-----ILDIVIN 1667
Query: 231 WPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLM------VSS 284
P F + K I E+++ + + D G + +S
Sbjct: 1668 NPVNLTIH-FGGEKGKRIR--ENYSAM---IFETIVD-----GKLKTEKIFKEINEHSTS 1716
Query: 285 LI-----EQL-KTENIPLVVYPNSGEHILAIETIPA----SKEAQMLCRLLREWPNQKAW 334
L T+ T PA K A L+ A
Sbjct: 1717 YTFRSEKGLLSATQF-----------------TQPALTLMEK-AAF--EDLKSKGLIPAD 1756
Query: 335 LSF---SCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCC 391
+F S L GE Y A L D V ++ V +V
Sbjct: 1757 ATFAGHS-------L------GE-YAA---------LASLAD--VMS-IESLVEVV---- 1786
Query: 392 RTYAEDTLHMKHR---LDDWV----SGLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRD 444
+R + V G S Y +I +P + +++A+ +
Sbjct: 1787 ----------FYRGMTMQVAVPRDELGRSNY--GMIAINP--GRVAASFSQEAL----QY 1828
Query: 445 FIK--GSQTNDFLR--DYNSPN 462
++ G +T + +YN N
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVEN 1850
Score = 31.6 bits (71), Expect = 0.85
Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 13/61 (21%)
Query: 522 QVARTCYNMNPDQLIAVG----VNCVRPLMVSPLIEQLKTENIPLVVYPNSG--ERYDFH 575
++ YN+ Q +A G ++ V + ++ +K + I ++ S E + H
Sbjct: 1842 EIV--NYNVENQQYVAAGDLRALDTV-----TNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Query: 576 L 576
L
Sbjct: 1895 L 1895
Score = 30.0 bits (67), Expect = 2.7
Identities = 23/144 (15%), Positives = 36/144 (25%), Gaps = 66/144 (45%)
Query: 448 GSQTN----DFLRDY-NSP---NLWIDRDLCEPVDKYVTDWLDEGVALV----------- 488
GSQ D Y S ++W +R D + D G +++
Sbjct: 1625 GSQEQGMGMDL---YKTSKAAQDVW-NR-----ADNHFKDTY--GFSILDIVINNPVNLT 1673
Query: 489 ---GG-------------CCRTYAEDTLHMKHRLDDWDDKHIS---NGE-------SFTQ 522
GG T + L + + ++ S E FTQ
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 523 VARTCYNMNPDQLIAVGVNCVRPL 546
A L + L
Sbjct: 1734 PA----------LTLMEKAAFEDL 1747
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A
{Aspergillus niger} PDB: 3fa3_A
Length = 302
Score = 36.1 bits (84), Expect = 0.022
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 198 RIQALVEAGADILAIETIPASKEAQMLCRLLREWP 232
R++A +AGAD+ +E I + + A+ + + L WP
Sbjct: 175 RLRAARDAGADVGFLEGITSREMARQVIQDLAGWP 209
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A
{Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A
Length = 307
Score = 35.4 bits (82), Expect = 0.039
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 198 RIQALVEAGADILAIETIPASKEAQMLCRLLREWP 232
R++A + GAD+ +E + ++A L WP
Sbjct: 183 RLRAARDEGADVGLLEGFRSKEQAAAAVAALAPWP 217
>1f07_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin
reductase; (beta, alpha)8 barrel; HET: MPO; 2.00A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.1.16.3
Length = 321
Score = 33.1 bits (76), Expect = 0.26
Identities = 17/135 (12%), Positives = 32/135 (23%), Gaps = 37/135 (27%)
Query: 105 SDDPARDI-----LIAGSVGPYGASLRDGSEYRGDYVEHVSEA----TMAEWHRLITDDP 155
+D A ++A + + D + E + D
Sbjct: 210 DEDAAAAANAAKIVVAFIAAGSPPPVFERHGLPADTGKKFGELLGKGDFGGAIGAVDDAL 269
Query: 156 ARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETI 215
+ G+ + P+I+AL E G
Sbjct: 270 MEAFSVVGT---------------------------PDEFIPKIEALGEMGVTQYVA-GS 301
Query: 216 PASKEAQMLCRLLRE 230
P + + +LL E
Sbjct: 302 PIGPDKEKSIKLLGE 316
>1zlp_A PSR132, petal death protein; TIM-barrel, helix
swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate
lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus
caryophyllus}
Length = 318
Score = 32.3 bits (74), Expect = 0.35
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 198 RIQALVEAGADILAIETIPASKEAQMLCRLLR 229
R EAGAD +E E + + +
Sbjct: 194 RANLYKEAGADATFVEAPANVDELKEVSAKTK 225
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for
infectious disease, ssgcid; 2.90A {Burkholderia
pseudomallei 1655}
Length = 298
Score = 32.3 bits (74), Expect = 0.40
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 198 RIQALVEAGADILAIETIPASKEAQMLCRLLR 229
R A VEAGAD++ E + + + ++
Sbjct: 176 RAIAYVEAGADMIFPEAMKTLDDYRRFKEAVK 207
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor
complex, isocitrate lyase superfamily; HET: ICT; 1.60A
{Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A
1o5q_A
Length = 295
Score = 32.3 bits (74), Expect = 0.42
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 198 RIQALVEAGADILAIETIPASKEAQMLCRLLR 229
R QA VEAGA++L E I + ++
Sbjct: 172 RAQAYVEAGAEMLFPEAITELAMYRQFADAVQ 203
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center
for structural GENO infectious diseases, csgid; 2.00A
{Bacillus anthracis str} PDB: 3kz2_A
Length = 305
Score = 31.9 bits (73), Expect = 0.48
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 198 RIQALVEAGADILAIETIPASKEAQMLCRLL 228
R A V+AGAD + E + + +E ++ +
Sbjct: 180 RANAYVKAGADAIFPEALQSEEEFRLFNSKV 210
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel,
oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus}
SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A*
1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Length = 503
Score = 31.8 bits (73), Expect = 0.62
Identities = 11/17 (64%), Positives = 15/17 (88%)
Query: 198 RIQALVEAGADILAIET 214
R+ ALVEAGAD+L I++
Sbjct: 246 RVPALVEAGADVLCIDS 262
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix
swapping, lyase; 1.90A {Pseudomonas aeruginosa}
Length = 287
Score = 31.1 bits (71), Expect = 0.91
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 198 RIQALVEAGADILAIETIPASKEAQMLCRLLR 229
R A EAGAD + + + + + L
Sbjct: 173 RTLAYQEAGADGICLVGVRDFAHLEAIAEHLH 204
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural
genomics center for infectious hydrolase; 1.70A
{Mycobacterium smegmatis} PDB: 3ijf_X
Length = 150
Score = 30.2 bits (68), Expect = 0.93
Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 15/103 (14%)
Query: 141 EATMAEWHRLITDDPARDILIAGSVGPY-----GASLR--DGSEYRGDYVEHVSEATMAE 193
+M W+ L A ++ + PY GA+ DG G VE+VS
Sbjct: 19 PGSMVNWNALR--SKAIEV-SRHAYAPYSGFPVGAAALVDDGRTVTGCNVENVSYGLGLC 75
Query: 194 WHRPRIQALVEAGAD-ILAIETIPASKEAQM---LCR-LLREW 231
+ AL G ++A+ + M CR +L E
Sbjct: 76 AECAVVCALHSGGGGRLVALSCVGPDGGVLMPCGRCRQVLLEH 118
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains,
oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes}
SCOP: c.1.5.1 d.37.1.1
Length = 491
Score = 31.3 bits (72), Expect = 1.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 198 RIQALVEAGADILAIET 214
R +AL EAGAD + I+T
Sbjct: 237 RAEALFEAGADAIVIDT 253
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.18A {Thermotoga maritima} SCOP:
c.1.5.1
Length = 494
Score = 31.3 bits (72), Expect = 1.0
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 198 RIQALVEAGADILAIET 214
R++ LV+AG D++ I+T
Sbjct: 241 RVEKLVKAGVDVIVIDT 257
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid, TIM
barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus
anthracis} PDB: 3tsd_A* 3tsb_A*
Length = 511
Score = 31.3 bits (72), Expect = 1.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 198 RIQALVEAGADILAIET 214
RI ALV+A D + ++T
Sbjct: 260 RIDALVKASVDAIVLDT 276
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics,
pyrococcus horikoshii OT3, riken structural
genomics/PROT initiative, RSGI; HET: XMP; 2.10A
{Pyrococcus horikoshii} SCOP: c.1.5.1
Length = 486
Score = 31.3 bits (72), Expect = 1.1
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 198 RIQALVEAGADILAIET 214
R L +AG D++ ++T
Sbjct: 232 RAIELDKAGVDVIVVDT 248
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo
sapiens}
Length = 49
Score = 27.8 bits (62), Expect = 1.1
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 167 PYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQA 201
P G + Y YV+H++ T ++ P +
Sbjct: 15 PAGWEKIEDPVYGIYYVDHINRKT--QYENPSGPS 47
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio
cholerae o1 biovar el tor}
Length = 496
Score = 31.3 bits (72), Expect = 1.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 198 RIQALVEAGADILAIET 214
R++ALVEAG D+L I++
Sbjct: 235 RVKALVEAGVDVLLIDS 251
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM
barrel, IMPDH, IMP dehydrogenase, LOO purine
biosynthesis, oxidoreductase; 2.40A {Borrelia
burgdorferi} SCOP: c.1.5.1
Length = 404
Score = 30.6 bits (70), Expect = 1.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 198 RIQALVEAGADILAIET 214
R++ LV+A DIL I++
Sbjct: 157 RVEELVKAHVDILVIDS 173
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex,
oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium
parvum}
Length = 361
Score = 30.3 bits (69), Expect = 1.7
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 198 RIQALVEAGADILAIET 214
R + LVEAG D++ +++
Sbjct: 109 RAKLLVEAGVDVIVLDS 125
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold,
oxidoreductase; 3.19A {Cryptosporidium parvum}
Length = 400
Score = 30.2 bits (69), Expect = 1.8
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 198 RIQALVEAGADILAIET 214
R + LVEAG D++ +++
Sbjct: 148 RAKLLVEAGVDVIVLDS 164
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio
cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A
Length = 366
Score = 30.3 bits (69), Expect = 1.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 198 RIQALVEAGADILAIET 214
R++ALVEAG D+L I++
Sbjct: 112 RVKALVEAGVDVLLIDS 128
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 2.0
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 7/26 (26%)
Query: 81 QLIK---SSVD-YVKE---AIALEAT 99
Q +K +S+ Y + A+A++AT
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKAT 45
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine
nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A
{Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A*
1nf7_A* 1b3o_A* 1nfb_A*
Length = 514
Score = 30.2 bits (69), Expect = 2.2
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 198 RIQALVEAGADILAIET 214
R+ L +AG D++ +++
Sbjct: 259 RLDLLTQAGVDVIVLDS 275
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP
mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A
{Variovorax SP} PDB: 2dua_A* 2hrw_A
Length = 290
Score = 29.9 bits (68), Expect = 2.4
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 198 RIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQK 235
R QA EAGAD + I + + + ++L ++ WP +
Sbjct: 171 RGQAYEEAGADAILIHSRQKTPD-EIL-AFVKSWPGKV 206
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of
2-oxoglutarate dehydrogenase...; glycolysis,
acyltransferase, lipoyl; NMR {Azotobacter vinelandii}
SCOP: b.84.1.1 PDB: 1ghk_A
Length = 79
Score = 27.6 bits (62), Expect = 2.6
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 184 EHVSEATMAEWHRPRIQALVEAGADILAIET 214
E +++ T+A WH+ +A V+ I+ IET
Sbjct: 11 ESIADGTVATWHKKPGEA-VKRDELIVDIET 40
>1ezw_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin
reductase; (beta, alpha)8 barrel, TIM barrel,
oxidoreductase; 1.65A {Methanopyrus kandleri} SCOP:
c.1.16.3
Length = 349
Score = 29.7 bits (67), Expect = 3.0
Identities = 16/117 (13%), Positives = 33/117 (28%), Gaps = 36/117 (30%)
Query: 105 SDDPARDI-----LIAGSVGPYGASLRDGSEYRGDYVEHVSEATMA----EWHRLITDDP 155
D + I ++A V + + + E ++EA L+ +D
Sbjct: 235 DKDEDKAIEATKIVVAFIVMGSPDVVLERHGIDTEKAEQIAEAIGKGDFGTAIGLVDEDM 294
Query: 156 ARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAI 212
IAG + +I+ L++AG + +
Sbjct: 295 IEAFSIAGD---------------------------PDTVVDKIEELLKAGVTQVVV 324
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase,
lipoyl domain, complex, glycolysis; NMR {Escherichia
coli} SCOP: b.84.1.1
Length = 80
Score = 27.2 bits (61), Expect = 3.5
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 184 EHVSEATMAEWHRPRIQALVEAGADILAIET 214
E V++AT+A WH+ + V ++ IET
Sbjct: 12 ESVADATVATWHK-KPGDAVVRDEVLVEIET 41
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate
biosynthesis pathway, isomera; 1.69A {Mytilus edulis}
SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Length = 295
Score = 29.1 bits (66), Expect = 3.9
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 198 RIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQK 235
R +A AGAD + + + + + + ++ W +Q
Sbjct: 175 RAEAYRNAGADAILMHS-KKADPSDIE-AFMKAWNNQG 210
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural
genomics, epimerase, PSI, structure initiative; 1.60A
{Streptococcus pyogenes} SCOP: c.1.2.5
Length = 234
Score = 28.7 bits (64), Expect = 4.3
Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 12/106 (11%)
Query: 198 RIQALVEAGADILAIETI----PASKE-AQMLCRLLREWPHQKAWLSFSCKDDKHISNGE 252
+ L ++A++ + A + ++ ++P+Q S D+ +++
Sbjct: 93 EVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQA 152
Query: 253 SFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVV 298
V T P G + +LIE L I ++
Sbjct: 153 GIDFVGTTLSGYTPYSRQEAGPDV-------ALIEALCKAGIAVIA 191
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic,
ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase;
HET: AKG; 1.65A {Deinococcus ficus}
Length = 275
Score = 28.8 bits (65), Expect = 5.0
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 198 RIQALVEAGADILAIETIPASKEAQMLCR 226
R QA +AGAD + + S++ + L
Sbjct: 173 RGQAYADAGADGIFVPLALQSQDIRALAD 201
>2qiw_A PEP phosphonomutase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc
13032}
Length = 255
Score = 28.4 bits (64), Expect = 5.7
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 198 RIQALVEAGADILAIETIPASKEAQMLCR 226
RI+ + +AGA + + +++ + L
Sbjct: 173 RIKLMEQAGARSVYPVGLSTAEQVERLVD 201
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural
genomics, the center for structural genomics of I
diseases, csgid; 1.87A {Listeria monocytogenes}
Length = 249
Score = 28.2 bits (63), Expect = 6.4
Identities = 17/119 (14%), Positives = 30/119 (25%), Gaps = 9/119 (7%)
Query: 141 EATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQ 200
+ T+ IT G + + GD V + +
Sbjct: 103 DLTIKNEKGEITMTN--KEKFTGFDFSSNPYEEEARKLWGDKVVEKANEKVNNMSEKEQL 160
Query: 201 ALVEAGADIL-----AIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESF 254
L E+ + P S+EAQ+ + + S GE +
Sbjct: 161 TLKESFDAEFRHLASVRKLTPESEEAQLEIDHFFHY--LNDTHGNIYSLEAFASLGEMY 217
>3c8n_A Probable F420-dependent glucose-6-phosphate dehyd FGD1; TIM barrel,
non-prolyl CIS-peptide, oxidoreductase; 1.90A
{Mycobacterium tuberculosis} PDB: 3b4y_A
Length = 356
Score = 28.2 bits (63), Expect = 9.1
Identities = 8/78 (10%), Positives = 18/78 (23%), Gaps = 8/78 (10%)
Query: 154 DPARDILIAGSVGPYGASLRDGSEYRG--------DYVEHVSEATMAEWHRPRIQALVEA 205
+ R S+ D E + A+ + ++ V
Sbjct: 264 NNTRFWAPLSLTAEQKHSIDDPIEMEKAADALPIEQIAKRWIVASDPDEAVEKVGQYVTW 323
Query: 206 GADILAIETIPASKEAQM 223
G + L + +
Sbjct: 324 GLNHLVFHAPGHDQRRFL 341
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.422
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,595,384
Number of extensions: 596650
Number of successful extensions: 1880
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1859
Number of HSP's successfully gapped: 60
Length of query: 591
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 492
Effective length of database: 3,937,614
Effective search space: 1937306088
Effective search space used: 1937306088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.7 bits)