RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17603
(591 letters)
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 361
Score = 61.5 bits (148), Expect = 9e-11
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 4 VKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQA 63
+ + DGGF L G + G W+ +AV Q HR+F++AG++++ T ++ A
Sbjct: 12 IVIGDGGFVFALEKR-GYVKAG--PWTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYA 68
Query: 64 SIGGFMEF--LDLDYDSSYQLIKSSVD 88
S L+ S ++ +++ D
Sbjct: 69 SEDKLENRGNYVLEKISGQEVNEAAAD 95
Score = 54.2 bits (129), Expect = 2e-08
Identities = 33/255 (12%), Positives = 71/255 (27%), Gaps = 41/255 (16%)
Query: 174 DGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPH 233
G Y+ SE + + +++ ++ D L E +E +
Sbjct: 110 GGVSQTPSYLSAKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEE-AVWAVETLIASG 168
Query: 234 QKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTEN 293
+ + + + + R I P + ++ +K
Sbjct: 169 KPVAATMAIGPEGDLHGVPPGEAAVRLVKAGAS---IIGVNCHFDPTISLKTVKLMKEGL 225
Query: 294 IPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSG 353
+ + LA T A+K+ P + P
Sbjct: 226 EAAQLKAHLMSQPLAYHTPDANKQG-------------------FIDLPEFPFGLEPRVA 266
Query: 354 ERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWVSGLS 413
R+D + KY + + GV +GGCC H++ + + ++
Sbjct: 267 TRWD--------------IQKYAREAYNLGVRYIGGCCGFEPY---HIR-AIAEELAPER 308
Query: 414 TYVGDIIDGHPLWSS 428
++ + H W S
Sbjct: 309 GFLPPASEKHGSWGS 323
Score = 39.1 bits (90), Expect = 0.001
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 457 DYNSPNLWIDRDLCEPVD--KYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDD 508
D ++ + D KY + + GV +GGCC + L
Sbjct: 253 DLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAP 306
Score = 30.7 bits (68), Expect = 0.51
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 424 PLWSSYFLATAKDAVVQTHRDFIK-GS---QTNDF 454
W+ +AV Q HR+F++ GS QT F
Sbjct: 32 GPWTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTF 66
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine
synthase MetH, N-terminal domain {Thermotoga maritima
[TaxId: 2336]}
Length = 300
Score = 60.0 bits (144), Expect = 2e-10
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 3 NVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQ 62
V L+DG + ++ Y G+ A D V++ HR +I++G+D+++TN++
Sbjct: 14 RVLLLDGAYGTEFMKY------GYDDLPEELNIKAPDVVLKVHRSYIESGSDVILTNTFG 67
Query: 63 ASIGGFMEF 71
A+ +
Sbjct: 68 ATRMKLRKH 76
Score = 53.1 bits (126), Expect = 4e-08
Identities = 45/297 (15%), Positives = 88/297 (29%), Gaps = 66/297 (22%)
Query: 111 DILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGA 170
D+++ + +GA+ ++ + + I A + L+ G +GP G
Sbjct: 59 DVILTNT---FGATRMKLRKHGLED--KLDPIVRNAVR--IARRAAGEKLVFGDIGPTG- 110
Query: 171 SLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLRE 230
+ E R ++ +VE G D + ET E + RE
Sbjct: 111 -------ELPYPLGSTLFEEFYENFRETVEIMVEEGVDGIIFETFSDILELKAAVLAARE 163
Query: 231 WPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLK 290
++ D+K S + ++ + + + ++ E +
Sbjct: 164 VSRDVFLIAHMTFDEKGRSLTGTDPANFAITFDELDIDALGINCSLGPEEILPIFQELSQ 223
Query: 291 TENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYP 350
+ LVV PN+G+ I+ N K YP
Sbjct: 224 YTDKFLVVEPNAGKPIV---------------------ENGKTV--------------YP 248
Query: 351 NSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDD 407
+ ++ + + GV + GGCC T E + L +
Sbjct: 249 LKPHDFA----------------VHIDSYYELGVNIFGGCCGTTPEHVKLFRKVLGN 289
Score = 40.0 bits (92), Expect = 5e-04
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 475 KYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDD 508
++ + + GV + GGCC T E + L +
Sbjct: 256 VHIDSYYELGVNIFGGCCGTTPEHVKLFRKVLGN 289
Score = 31.1 bits (69), Expect = 0.31
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 422 GHPLWSSYFLATAKDAVVQTHRDFIK-GS---QTNDF 454
G+ A D V++ HR +I+ GS TN F
Sbjct: 30 GYDDLPEELNIKAPDVVLKVHRSYIESGSDVILTNTF 66
>d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 418
Score = 31.2 bits (70), Expect = 0.41
Identities = 21/150 (14%), Positives = 41/150 (27%), Gaps = 18/150 (12%)
Query: 137 EHVSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHR 196
+H+ T A + D ++ A+L D E T ++R
Sbjct: 204 QHIRTLTSARLAADVADV---PTVVIARTDAEAATLITSDVDERDQPFITGERTREGFYR 260
Query: 197 P---------RIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKH 247
R +A I P + A+ ++ + L+++C +
Sbjct: 261 TKNGIEPCIARAKAYAPFADLIWMETGTPDLEAARQFSEAVK-AEYPDQMLAYNCSPSFN 319
Query: 248 ISNGESFTQVARTCYNMNPDQLIAVGVNCV 277
T +L A+G
Sbjct: 320 WKKHLD----DATIAKF-QKELAAMGFKFQ 344
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 50
Score = 26.2 bits (58), Expect = 1.5
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 167 PYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAG 206
P G R ++ R ++ H + T +W PR+Q + G
Sbjct: 13 PPGWEERTHTDGRVFFINHNIKKT--QWEDPRMQNVAITG 50
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 45
Score = 25.8 bits (57), Expect = 1.7
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 167 PYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQ 200
P G + S+ R +V H + T +W PR Q
Sbjct: 14 PDGWEKKIQSDNRVYFVNHKNRTT--QWEDPRTQ 45
>d1u1ia2 d.81.1.3 (A:228-332) Myo-inositol 1-phosphate synthase
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 105
Score = 26.7 bits (59), Expect = 3.1
Identities = 7/50 (14%), Positives = 16/50 (32%)
Query: 57 MTNSYQASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSD 106
+ +I G + L + + S D V E + + ++
Sbjct: 21 VVGWMSYNILGDYDGKVLSARDNKESKVLSKDKVLEKMLGYSPYSITEIQ 70
>d1k8ta_ e.41.1.1 (A:) Adenylylcyclase toxin (the edema factor)
{Bacillus anthracis [TaxId: 1392]}
Length = 509
Score = 28.0 bits (62), Expect = 3.5
Identities = 22/132 (16%), Positives = 47/132 (35%), Gaps = 32/132 (24%)
Query: 472 PVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWD--------DKHISNGES---- 519
PV+K T+ + GVA G L++ + DW D+ +S
Sbjct: 40 PVNKLATNLIKSGVATKG----------LNVHGKSSDWGPVAGYIPFDQDLSKKHGQQLA 89
Query: 520 ---FTQVARTCYNMNPDQLIAVGV----NCVRPLMVSPLIEQLKTEN---IPLVVYPNSG 569
+ + ++ + + + L + +I + K E + ++
Sbjct: 90 VEKGNLENKKSITEHEGEIGKIPLKLDHLRIEELKENGIILKGKKEIDNGKKYYLLESNN 149
Query: 570 ERYDFHLADEKN 581
+ Y+F ++DE N
Sbjct: 150 QVYEFRISDENN 161
Score = 26.8 bits (59), Expect = 8.3
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 10/38 (26%)
Query: 371 PVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDW 408
PV+K T+ + GVA G L++ + DW
Sbjct: 40 PVNKLATNLIKSGVATKG----------LNVHGKSSDW 67
>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate
dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId:
1314]}
Length = 365
Score = 27.3 bits (60), Expect = 6.2
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 198 RIQALVEAGADILAIET--IPASKEAQMLCRLLREWPHQKAW------------LSFSCK 243
R +AL EAGAD + I+T ++ + + + +P++ L +
Sbjct: 111 RAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGV 170
Query: 244 DDKHISNGESFTQVARTCYNMNPDQLIAV 272
D + G R + Q+ A+
Sbjct: 171 DVVKVGIGPGSICTTRVVAGVGVPQVTAI 199
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.422
Gapped
Lambda K H
0.267 0.0427 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,346,219
Number of extensions: 112230
Number of successful extensions: 313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 23
Length of query: 591
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 501
Effective length of database: 1,171,896
Effective search space: 587119896
Effective search space used: 587119896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)