BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17605
(551 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A3Y|B Chain B, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 305
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/343 (20%), Positives = 137/343 (39%), Gaps = 86/343 (25%)
Query: 220 RIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVG 279
+I +FYL+FY LA + + L TL P++ + + PG+ P +++++
Sbjct: 35 KIFLFYLIFYGCLAGIFIGTIQVLLLTLSDFEPKY---QDRVAP-PGLSHAPYAIKTEIS 90
Query: 280 SSLIWYKASDRSNYQYWIDSLIKFLDVY---KRPGLTPGRGQNIYNCDYDRPPGRGQVCD 336
S+ S+ +Y+ ++ S+ K +D+Y + G +P
Sbjct: 91 FSI-----SNPKSYESFVKSMHKLMDLYNESSQAGNSP---------------------- 123
Query: 337 VDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDV 396
F+ C++ +Y K G D D G+ + C
Sbjct: 124 -----FEDCSD-TPADYIKRG-------------------------DLDDSQGQKKACRF 152
Query: 397 DVKLFDPCT--EENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIEN 454
C+ ++ + Y + PC+ KLN++ G+ P+ +T +LP + Y+
Sbjct: 153 SRMWLKNCSGLDDTTYGYAEGKPCVVAKLNRIIGFYPKPLKNTTDLPEQLQANYNQYV-- 210
Query: 455 VARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGY---FFPYEN---SEGYLSP 508
+ + C + D E +G I+Y+ G+AG+ ++PY + YL P
Sbjct: 211 -----------LPLRCAAKREEDREKIGSIEYFGLGGYAGFPLQYYPYYGKRLQKKYLQP 259
Query: 509 LVAINIPRPRTGILINIKCKAWAKNIKHLRDGSGSVHFEIMVD 551
L+AI + + I+CK + +NI + FE+ ++
Sbjct: 260 LLAIQFTNLTQNMELRIECKVYGENIDYSEKDRFRGRFEVKIE 302
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 19/100 (19%)
Query: 62 KPNADHLHLSSVYLANYTSYVTTFKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQG 121
KP + L ANY YV + C + D E +G I+Y+ G
Sbjct: 190 KPLKNTTDLPEQLQANYNQYVLPLR-------------CAAKREEDREKIGSIEYFGLGG 236
Query: 122 FAGY---FFPYEN---SEGYLSPLVAINIPRPRTGISLEL 155
+AG+ ++PY + YL PL+AI + L +
Sbjct: 237 YAGFPLQYYPYYGKRLQKKYLQPLLAIQFTNLTQNMELRI 276
>pdb|2ZXE|B Chain B, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
Length = 305
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/343 (20%), Positives = 137/343 (39%), Gaps = 86/343 (25%)
Query: 220 RIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVG 279
+I +FYL+FY LA + + L TL P++ + + PG+ P +++++
Sbjct: 35 KIFLFYLIFYGCLAGIFIGTIQVLLLTLSDFEPKY---QDRVAP-PGLSHAPYAIKTEIS 90
Query: 280 SSLIWYKASDRSNYQYWIDSLIKFLDVY---KRPGLTPGRGQNIYNCDYDRPPGRGQVCD 336
S+ S+ +Y+ ++ S+ K +D+Y + G +P
Sbjct: 91 FSI-----SNPKSYESFVKSMHKLMDLYNESSQAGNSP---------------------- 123
Query: 337 VDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDV 396
F+ C++ +Y K G D D G+ + C
Sbjct: 124 -----FEDCSD-TPADYIKRG-------------------------DLDDSQGQKKACRF 152
Query: 397 DVKLFDPCT--EENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIEN 454
C+ ++ + Y + PC+ KLN++ G+ P+ +T +LP + Y+
Sbjct: 153 SRMWLKNCSGLDDTTYGYAEGKPCVVAKLNRIIGFYPKPLKNTTDLPEELQANYNQYV-- 210
Query: 455 VARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGY---FFPYEN---SEGYLSP 508
+ + C + D E +G I+Y+ G+AG+ ++PY + YL P
Sbjct: 211 -----------LPLRCAAKREEDREKIGSIEYFGLGGYAGFPLQYYPYYGKRLQKKYLQP 259
Query: 509 LVAINIPRPRTGILINIKCKAWAKNIKHLRDGSGSVHFEIMVD 551
L+AI + + I+CK + +NI + FE+ ++
Sbjct: 260 LLAIQFTNLTQNMELRIECKVYGENIDYSEKDRFRGRFEVKIE 302
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 19/100 (19%)
Query: 62 KPNADHLHLSSVYLANYTSYVTTFKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQG 121
KP + L ANY YV + C + D E +G I+Y+ G
Sbjct: 190 KPLKNTTDLPEELQANYNQYVLPLR-------------CAAKREEDREKIGSIEYFGLGG 236
Query: 122 FAGY---FFPYEN---SEGYLSPLVAINIPRPRTGISLEL 155
+AG+ ++PY + YL PL+AI + L +
Sbjct: 237 YAGFPLQYYPYYGKRLQKKYLQPLLAIQFTNLTQNMELRI 276
>pdb|3N23|B Chain B, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|D Chain D, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|B Chain B, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|D Chain D, Crystal Structure Of The Sodium-Potassium Pump
Length = 277
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/340 (20%), Positives = 133/340 (39%), Gaps = 81/340 (23%)
Query: 220 RIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVG 279
+I +FY++FY LA + + L T+ P + + + PG+ P ++++
Sbjct: 8 KILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTY---QDRVAP-PGLTQIPQSQKTEIS 63
Query: 280 SSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQVCDVDV 339
++ +D +Y+ ++ S+++FL+ YK + D
Sbjct: 64 -----FRPNDPQSYESYVVSIVRFLEKYK------------------------DLAQKDD 94
Query: 340 KLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVK 399
+F+ C + + + +Y+ G +VC ++
Sbjct: 95 MIFEDCG--------------------------NVPSELKERGEYNNERGERKVCRFRLE 128
Query: 400 LFDPCTEENH--FNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIENVAR 457
C+ N + Y PC+ +KLN+V G+ P+ + L Y V +
Sbjct: 129 WLGNCSGLNDETYGYKDGKPCVIIKLNRVLGFKPKPPKNES---------LETY--PVMK 177
Query: 458 TNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGY---FFPYEN---SEGYLSPLVA 511
NP L V C G+ D E +G ++Y+ G+ G+ ++PY YL PL+A
Sbjct: 178 YNPYVLP---VHCTGKRDEDKEKVGTMEYFGLGGYPGFPLQYYPYYGKLLQPKYLQPLMA 234
Query: 512 INIPRPRTGILINIKCKAWAKNIKHLRDGSGSVHFEIMVD 551
+ I I+CKA+ +NI + F++ ++
Sbjct: 235 VQFTNLTMDTEIRIECKAYGENIGYSEKDRFQGRFDVKIE 274
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 98 VSCEGENPADIENLGDIKYYPKQGFAGY---FFPYEN---SEGYLSPLVAIN 143
V C G+ D E +G ++Y+ G+ G+ ++PY YL PL+A+
Sbjct: 185 VHCTGKRDEDKEKVGTMEYFGLGGYPGFPLQYYPYYGKLLQPKYLQPLMAVQ 236
>pdb|3KDP|B Chain B, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|D Chain D, Crystal Structure Of The Sodium-potassium Pump
Length = 286
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 69/340 (20%), Positives = 133/340 (39%), Gaps = 81/340 (23%)
Query: 220 RIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVG 279
+I +FY++FY LA + + L T+ P + + + PG+ P +++
Sbjct: 17 KILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTY---QDRVAP-PGLTQIPQSQKTE-- 70
Query: 280 SSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQVCDVDV 339
I ++ +D +Y+ ++ S+++FL+ YK + D
Sbjct: 71 ---ISFRPNDPQSYESYVVSIVRFLEKYK------------------------DLAQKDD 103
Query: 340 KLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVK 399
+F+ C + + + +Y+ G +VC ++
Sbjct: 104 MIFEDCG--------------------------NVPSELKERGEYNNERGERKVCRSRLE 137
Query: 400 LFDPCTEENH--FNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIENVAR 457
C+ N + Y PC+ +KLN+V G+ P+ + L Y V +
Sbjct: 138 WLGNCSGLNDETYGYKDGKPCVIIKLNRVLGFKPKPPKNES---------LETY--PVMK 186
Query: 458 TNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGY---FFPYEN---SEGYLSPLVA 511
NP L V C G+ D E +G ++Y+ G+ G+ ++PY YL PL+A
Sbjct: 187 YNPYVLP---VHCTGKRDEDKEKVGTMEYFGLGGYPGFPLQYYPYYGKLLQPKYLQPLMA 243
Query: 512 INIPRPRTGILINIKCKAWAKNIKHLRDGSGSVHFEIMVD 551
+ I I+CKA+ +NI + F++ ++
Sbjct: 244 VQFTNLTMDTEIRIECKAYGENIGYSEKDRFQGRFDVKIE 283
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 98 VSCEGENPADIENLGDIKYYPKQGFAGY---FFPYEN---SEGYLSPLVAINI 144
V C G+ D E +G ++Y+ G+ G+ ++PY YL PL+A+
Sbjct: 194 VHCTGKRDEDKEKVGTMEYFGLGGYPGFPLQYYPYYGKLLQPKYLQPLMAVQF 246
>pdb|3IXZ|B Chain B, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|B Chain B, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|B Chain B, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 290
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 76/340 (22%), Positives = 137/340 (40%), Gaps = 101/340 (29%)
Query: 203 NSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIG 262
N + GQ + + L + I ++Y+ FY V++ + + ++ ++T+DP TP + + L
Sbjct: 23 NPDTGQM-LGRTLSRWVWISLYYVAFYVVMSGIFALCIYVLMRTIDPYTPDY--QDQL-- 77
Query: 263 TNPGIGFRPIPVESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYN 322
+PG+ RP V + G I Y SD + + +L +FL G +P + N
Sbjct: 78 KSPGVTLRP-DVYGEKGLD-ISYNVSDSTTWAGLAHTLHRFL-----AGYSPAAQEGSIN 130
Query: 323 CDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLR 382
CT E +F + +S FL N T +C + +L+
Sbjct: 131 ----------------------CTSEKYF-FQES----FLAPNHTKFSC---KFTADMLQ 160
Query: 383 DYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPR 442
+ P DP F + + PC +K+N++ ++P PR
Sbjct: 161 NCSGRP-------------DPT-----FGFAEGKPCFIIKMNRIVKFLP----GNSTAPR 198
Query: 443 GMPGQLRNYIENVARTNPKQLNTVWVSCEG-ENPADIENLGDIKYYPKQG-FAGYFFPYE 500
V C + P D L ++Y+P G ++ ++FPY
Sbjct: 199 -------------------------VDCAFLDQPRDGPPL-QVEYFPANGTYSLHYFPYY 232
Query: 501 NSEG---YLSPLVA---INIPRPRTGILINIKCKAWAKNI 534
+ Y +PLVA +N+PR R +++ CK A+++
Sbjct: 233 GKKAQPHYSNPLVAAKLLNVPRNRDVVIV---CKILAEHV 269
>pdb|3QG5|C Chain C, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|D Chain D, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 379
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 9 FCYNFLTHYFLIVSQVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQVKPNADHL 68
FC NF + ++ + G +P+ + NL + + + R IE V R +P++ K D L
Sbjct: 285 FCRNFPGYVRVVYEEDSGILPDLXGEIDNLVK-IERKSRREIEEVLRESPEEFKEELDKL 343
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,380,554
Number of Sequences: 62578
Number of extensions: 904025
Number of successful extensions: 1584
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1558
Number of HSP's gapped (non-prelim): 15
length of query: 551
length of database: 14,973,337
effective HSP length: 104
effective length of query: 447
effective length of database: 8,465,225
effective search space: 3783955575
effective search space used: 3783955575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)