Query psy17605
Match_columns 551
No_of_seqs 253 out of 566
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 18:21:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01107 Na_K_ATPase_bet Sodi 100.0 2.1E-80 4.4E-85 626.3 26.0 263 194-551 13-288 (289)
2 PF00287 Na_K-ATPase: Sodium / 100.0 6.9E-79 1.5E-83 615.6 19.9 267 194-547 14-289 (289)
3 KOG3927|consensus 100.0 1.2E-74 2.6E-79 585.6 25.7 274 192-551 19-297 (300)
4 TIGR01107 Na_K_ATPase_bet Sodi 100.0 2.5E-33 5.3E-38 284.2 11.5 101 6-171 166-271 (289)
5 PF00287 Na_K-ATPase: Sodium / 100.0 5.9E-32 1.3E-36 274.3 8.3 107 6-172 166-277 (289)
6 KOG3927|consensus 100.0 1.4E-28 3E-33 250.3 9.8 109 6-172 170-283 (300)
7 PF09451 ATG27: Autophagy-rela 42.7 87 0.0019 32.2 7.4 30 215-244 197-226 (268)
8 PF11395 DUF2873: Protein of u 42.1 43 0.00093 25.8 3.7 26 221-246 6-31 (43)
9 PF10329 DUF2417: Region of un 38.3 72 0.0016 32.9 5.9 42 213-254 173-214 (232)
10 PF02419 PsbL: PsbL protein; 27.3 73 0.0016 24.3 2.9 30 202-237 3-32 (37)
11 CHL00038 psbL photosystem II p 26.8 83 0.0018 24.1 3.1 24 202-225 4-27 (38)
12 PF07117 DUF1373: Protein of u 26.4 67 0.0015 31.9 3.3 30 465-502 3-35 (210)
13 PRK00753 psbL photosystem II r 26.2 84 0.0018 24.1 3.0 24 202-225 5-28 (39)
14 COG4698 Uncharacterized protei 25.0 2E+02 0.0043 29.1 6.2 61 230-310 17-77 (197)
15 PF14333 DUF4389: Domain of un 22.0 1.9E+02 0.0042 24.7 4.9 33 214-246 5-37 (80)
16 PF12273 RCR: Chitin synthesis 22.0 66 0.0014 29.5 2.2 10 217-226 1-10 (130)
17 PF03896 TRAP_alpha: Transloco 20.1 93 0.002 32.9 3.1 23 227-249 209-231 (285)
No 1
>TIGR01107 Na_K_ATPase_bet Sodium Potassium ATPase beta subunit. This model describes the Na+/K+ ATPase beta subunit in eukaryotes. Na+/K+ ATPase(also called Sodium-Potassium pump) is intimately associated with the plasma membrane. It couples the energy released by the hydrolysis of ATP to extrude 3 Na+ ions, with the concomitant uptake of 2K+ ions, against their ionic gradients.
Probab=100.00 E-value=2.1e-80 Score=626.31 Aligned_cols=263 Identities=29% Similarity=0.565 Sum_probs=225.1
Q ss_pred cccccccccCcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCcccCCCCcceecCCC
Q psy17605 194 PSHIHKLRGNSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIP 273 (551)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~rt~~sW~~I~lFYliFY~~La~lFa~~m~v~l~TLd~~~P~~q~d~slig~~PGL~~rP~~ 273 (551)
.....+...||++|++ +|||++||++|+|||||||+||||||++|||+||||||+++|+||++. ++||||+||..
T Consensus 13 ~~~~k~fi~n~~~~e~-~GRT~~sW~kIllFYliFY~~La~~F~~~m~v~l~Tl~~~~Pk~q~~~----~~PGL~~rP~~ 87 (289)
T TIGR01107 13 MGEWKKFIWNPETKEF-LGRTGGSWFKILLFYLVFYGCLAGIFIGTIQVMLQTISDFTPKYQDRV----ASPGLTQRPKV 87 (289)
T ss_pred ccchhhheeCCCCCeE-eccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcCC----CCCceeeccCC
Confidence 4456788999999999 999999999999999999999999999999999999999999999764 59999999964
Q ss_pred CCCCCcceEEEEEcCCCccHHHHHHHHHHhhHhcCCCCCCCCCCCCccCCCCC----CCCCCCcceeecccccCCccccC
Q psy17605 274 VESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYD----RPPGRGQVCDVDVKLFDPCTEEN 349 (551)
Q Consensus 274 ~~~~~~s~lI~fn~sd~~s~~~yv~~L~~FL~~Y~~~~~~~~~~~n~~~C~~~----~~~~~~~~C~F~~~~lg~csg~~ 349 (551)
+.++|+|+++++++|++||++|++||++|+++.| .+.+..+|..+ +.+
T Consensus 88 -----~~~eI~f~~~~~~s~~~yv~~l~~FL~~Y~~~~q---~~~~~~~C~~~~~~~~~~-------------------- 139 (289)
T TIGR01107 88 -----QKLEISFNVSDPSSYEGYVQNLHKFLKPYNDSAQ---EDKNLFDCGDGAEYEQRG-------------------- 139 (289)
T ss_pred -----CceEEEEeCCChHHHHHHHHHHHHHHHhhchhhc---cccccccCCccccccccC--------------------
Confidence 3678999999999999999999999999998755 23334688431 110
Q ss_pred ccccCCCCCceeeccchhhhhhccccccccccccCCCCCCCCcccccCccccCCCCC--CCCCccCCCCcEEEEEeceee
Q psy17605 350 HFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVKLFDPCTE--ENHFNYHKSGPCLFLKLNKVY 427 (551)
Q Consensus 350 ~f~~~~g~pc~~~k~nr~~~~c~~~~~~~~~~~~~~~~~~~~~~C~f~~~~~~~Cs~--d~~fGY~~g~PCI~lKLNkI~ 427 (551)
+.+.+.+..+||+|+++++++||. |++|||++|+||||||||||+
T Consensus 140 ---------------------------------~~~~~~~~~~~C~F~~~~Lg~Cs~~~D~~fGY~~GkPCI~iKLNrIi 186 (289)
T TIGR01107 140 ---------------------------------PFNAPYGTKKACQFKRDWLGNCSGLNDPTFGYSEGKPCIIIKMNRII 186 (289)
T ss_pred ---------------------------------CccccccccccceecHHhccCCCCCCCCCcCcCCCCCeEEEEeeeee
Confidence 111222333444444444447765 677999999999999999999
Q ss_pred eeeeeccCCCCCCCCCCChhhHHHHhhhhccCCCCCCceEEeeecCCCCCCCCccceEEecCCC-CCCccccCCC---CC
Q psy17605 428 GWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQG-FAGYFFPYEN---SE 503 (551)
Q Consensus 428 Gw~P~~y~~~~~LP~~~P~~Lk~~I~~~~~~~~~~~n~IwVsC~g~~~~D~e~lg~I~Y~P~~G-Fp~~YFPY~n---q~ 503 (551)
||+|+. . +.|||+|+|++++|.|++|+|+|||.+| ||++||||+| |+
T Consensus 187 g~~P~~---~--------------------------~~i~v~C~~~~~~d~e~~g~i~YyP~~G~f~~~YfPY~gk~~q~ 237 (289)
T TIGR01107 187 GFKPKN---P--------------------------GVPPVDCTGKRDEDDENIGNVEYYPMNGGFPLQYFPYYGKKLQP 237 (289)
T ss_pred CcccCC---C--------------------------CCCceEecccCccccccccceEECCCCCCcCcccccccCcccCc
Confidence 999991 1 1499999999999999999999999987 9999999999 99
Q ss_pred CCCCCeEEEEcCCCCCCcEEEEEEEeecCCCccC--CCC-ceeEEEEEEeC
Q psy17605 504 GYLSPLVAINIPRPRTGILINIKCKAWAKNIKHL--RDG-SGSVHFEIMVD 551 (551)
Q Consensus 504 gYlsPLVAVqf~n~~~n~~I~IeCkawAkNI~~d--~d~-~G~V~FeL~Vd 551 (551)
+|+||||||||.|+++|++|+|||||||+||.++ +|+ .|||+|+|+||
T Consensus 238 ~YlqPLVAVqf~~~~~n~~v~VeCk~~a~NI~~~~~~d~~~G~v~f~l~i~ 288 (289)
T TIGR01107 238 NYLQPLVAVQFTNLTMNTEVRIECKIYGENIAYSNEKDRFLGRVDFKITIK 288 (289)
T ss_pred CCcCCeEEEEeecCCCCcEEEEEEEEeccCCccCCCccccCCeEEEEEEec
Confidence 9999999999999999999999999999999995 554 89999999997
No 2
>PF00287 Na_K-ATPase: Sodium / potassium ATPase beta chain; InterPro: IPR000402 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the beta subunit found in the P-type cation exchange ATPases located in the plasma membranes of animal cells. These P-ATPases include both H+/K+-ATPases (3.6.3.10 from EC) and Na+/K+-ATPases (3.6.3.9 from EC), which belong to the IIC subfamily of ATPases [, ]. These ATPases catalyse the hydrolysis of ATP coupled with the exchange of cations, pumping one cation out of the cell (H+ or Na+) in exchange for K+. These ATPases contain an alpha subunit (IPR005775 from INTERPRO) that is the catalytic component, and a glycosylated beta subunit that regulates the number of sodium pumps transported to the plasma membrane through the assembly of alpha/beta heterodimers. The beta subunit has three highly conserved disulphide bonds within the extracellular domain that stabilise the alpha subunit, the alpha/beta interaction, and the catalytic activity of the alpha subunit []. Different beta isoforms exist, permitting greater regulatory control. An example of a H+/K+-ATPase is the gastric pump responsible for acid secretion in the stomach, transporting protons from the cytoplasm of parietal cells to create a large pH gradient in exchange for the internalisation of potassium ions, using ATP hydrolysis to drive the pump []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0005391 sodium:potassium-exchanging ATPase activity, 0006754 ATP biosynthetic process, 0006813 potassium ion transport, 0006814 sodium ion transport, 0016020 membrane; PDB: 2XZB_B 3A3Y_B 3N2F_D 3B8E_D 3KDP_D 3N23_D.
Probab=100.00 E-value=6.9e-79 Score=615.65 Aligned_cols=267 Identities=43% Similarity=0.830 Sum_probs=163.8
Q ss_pred cccccccccCcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCcccCCCCcceecCCC
Q psy17605 194 PSHIHKLRGNSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIP 273 (551)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~rt~~sW~~I~lFYliFY~~La~lFa~~m~v~l~TLd~~~P~~q~d~slig~~PGL~~rP~~ 273 (551)
-..+.+...|+++|+. +|||++||++|+|||||||++||||||+||||||||||+++|+||++ |++||||+||++
T Consensus 14 ~~~~~~fl~n~~~~~~-lGRT~~sW~~I~lFYlifY~~La~lfa~~m~v~l~tld~~~Pk~~~~----~~~PGL~~rP~~ 88 (289)
T PF00287_consen 14 WESFKRFLWNPETGEF-LGRTGKSWGKILLFYLIFYAFLAALFAICMWVFLQTLDPDVPKYQDR----GSNPGLGFRPNP 88 (289)
T ss_dssp --------------TT-S-SSSSTHHHHHHHHHTTHHHHHHHHHHHHHHHHHTSSSSS-S-STT----S-S--EEESS--
T ss_pred cchheeeeEcCCCCeE-eccCcCccchhhhhHHHHHHHHHHHHHHHHHHHHHHCCCCCCceecc----cccceeeecCCC
Confidence 3456778899999999 99999999999999999999999999999999999999999999965 579999999999
Q ss_pred CCCCCcceEEEEEcCCCccHHHHHHHHHHhhHhcCCCCCCCCCCCCccCCCCCCCCCCCcceeecccccCCccccCcccc
Q psy17605 274 VESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQVCDVDVKLFDPCTEENHFNY 353 (551)
Q Consensus 274 ~~~~~~s~lI~fn~sd~~s~~~yv~~L~~FL~~Y~~~~~~~~~~~n~~~C~~~~~~~~~~~C~F~~~~lg~csg~~~f~~ 353 (551)
.+ ++++|+|+.+++++|++||++|++||++|++..+ ....+|+.++-. ...
T Consensus 89 ~~---~s~~I~f~~s~~~s~~~yv~~L~~FL~~Y~~~~~-----~~~~~C~~g~~~--------~~~------------- 139 (289)
T PF00287_consen 89 DT---ESTLISFNASDPSSYQPYVDRLDEFLKPYNDSSQ-----KNNENCDPGQYF--------EQP------------- 139 (289)
T ss_dssp TT-----SEEEE-TT-SGGGHHHHHHHHHHHHCC-TTTS------SEE---S-S------------S-------------
T ss_pred Cc---CcceEEEECCCchhHHHHHHHHHHHHHHhccccc-----cccccCCCccee--------ecC-------------
Confidence 62 7899999999999999999999999999999865 336778743210 000
Q ss_pred CCCCCceeeccchhhhhhccccccccccccCCCCCCCCcccccCccccCCCCC--CCCCccCCCCcEEEEEeceeeeeee
Q psy17605 354 HKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVKLFDPCTE--ENHFNYHKSGPCLFLKLNKVYGWIP 431 (551)
Q Consensus 354 ~~g~pc~~~k~nr~~~~c~~~~~~~~~~~~~~~~~~~~~~C~f~~~~~~~Cs~--d~~fGY~~g~PCI~lKLNkI~Gw~P 431 (551)
++.+++..++||+|+++++++|+. |+.|||++|+||||||||||+||+|
T Consensus 140 -----------------------------~~~~~~~~~~~C~F~~~~lg~Cs~~~d~~~GY~~g~PCI~lKlNri~gw~P 190 (289)
T PF00287_consen 140 -----------------------------DFGSPNPPKKACQFDRSWLGPCSGENDPTFGYSSGKPCIFLKLNRIIGWKP 190 (289)
T ss_dssp -----------------------------SSSSSSSS--EE---GGGSTTS----SSS----SSS-EEEEEE---BT---
T ss_pred -----------------------------ccccCCCCCcEeEEechhhccCCCCCCCCccccCCCceEEEEcccccCccc
Confidence 122334455555555555558875 5679999999999999999999999
Q ss_pred eccCCCCCCCCCCChhhHHHHhhhhccCCCCCCceEEeeecCCCCCCCCccceEEecCC-CCCCccccCCC---CCCCCC
Q psy17605 432 EYYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQ-GFAGYFFPYEN---SEGYLS 507 (551)
Q Consensus 432 ~~y~~~~~LP~~~P~~Lk~~I~~~~~~~~~~~n~IwVsC~g~~~~D~e~lg~I~Y~P~~-GFp~~YFPY~n---q~gYls 507 (551)
++..+ .+.+.|||+|++++++|.|++|+|+|||.+ |||++||||+| |++|+|
T Consensus 191 ~~~~~------------------------~~~~~i~v~C~~~~~~d~~~i~~i~y~P~~ggf~~~YfPy~~k~~~~~Y~~ 246 (289)
T PF00287_consen 191 EPIDE------------------------YNSNKIWVSCEGENPEDKENIGPIEYYPSNGGFPLMYFPYYGKKAQPGYLS 246 (289)
T ss_dssp S-TT--------------------------TTTEEEEEEESSSSS---S---EEEE-STSEEEGGG-SB-TTTTSTT---
T ss_pred ccccc------------------------ccCCcceEEeeccccccccceeeEEEECCCCCcceeECCccCCccCCCCcC
Confidence 97211 134689999999999999999999999999 89999999999 999999
Q ss_pred CeEEEEcCCCCCCcEEEEEEEeecCCCccC--CCC-ceeEEEE
Q psy17605 508 PLVAINIPRPRTGILINIKCKAWAKNIKHL--RDG-SGSVHFE 547 (551)
Q Consensus 508 PLVAVqf~n~~~n~~I~IeCkawAkNI~~d--~d~-~G~V~Fe 547 (551)
|||||||.|+++|++|+|||||||+||++| +|+ .|+|+||
T Consensus 247 PlVAVqf~n~~~n~~i~veCk~wakNI~~d~~~~~~~G~V~F~ 289 (289)
T PF00287_consen 247 PLVAVQFTNPPRNVEINVECKAWAKNIPYDDERDKFLGRVHFK 289 (289)
T ss_dssp --EEEEESSS-SSS-EEEEEEE-STT----SSS-TTSSB--EE
T ss_pred CeEEEEEecCCCCcEEEEEEEEeCCCCCCCCcCCcccEEEEeC
Confidence 999999999999999999999999999998 454 9999997
No 3
>KOG3927|consensus
Probab=100.00 E-value=1.2e-74 Score=585.60 Aligned_cols=274 Identities=41% Similarity=0.821 Sum_probs=251.9
Q ss_pred CCcccccccccCcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCcccCCCCcceecC
Q psy17605 192 SSPSHIHKLRGNSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRP 271 (551)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~rt~~sW~~I~lFYliFY~~La~lFa~~m~v~l~TLd~~~P~~q~d~slig~~PGL~~rP 271 (551)
..|....+...|+++||. +|||++||++|+|||+|||++|||||++|||+||||||+++|+|+ ++ |++||||+||
T Consensus 19 ~~~~~~~~~~~n~~~~~~-~GRT~~sW~~IllfYivFY~~la~lf~~~~~~~~~tidp~~P~~~-~~---~~~PGl~~~P 93 (300)
T KOG3927|consen 19 EKPEEWKEFLYNPETGTF-LGRTGSSWAKILLFYIVFYGVLAALFAGCMWFMLQTIDPKVPKYK-DS---GANPGLSFRP 93 (300)
T ss_pred ccchhhHHheeCcccCeE-ECcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-cc---CCCCceeecC
Confidence 346677888999999999 999999999999999999999999999999999999999999999 44 6899999999
Q ss_pred CCCCCCCcceEEEEEcCCCccHHHHHHHHHHhhHhcCCCCCCCCCCCCccCCCCCCCCCCCcceeecccccCCccccCcc
Q psy17605 272 IPVESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQVCDVDVKLFDPCTEENHF 351 (551)
Q Consensus 272 ~~~~~~~~s~lI~fn~sd~~s~~~yv~~L~~FL~~Y~~~~~~~~~~~n~~~C~~~~~~~~~~~C~F~~~~lg~csg~~~f 351 (551)
.+.+ . ++++|+|+.+|+++|++|+++|++||++|+..++.+..+.+..+|.+.++..+..+|+|+++.|++||
T Consensus 94 ~~~~-~-~~~~i~~~~~~~~~~~~~~~~i~~fL~kY~d~~~~~~~~~~~~~~~~~q~~~~~~~ckfd~~~f~~cs----- 166 (300)
T KOG3927|consen 94 NPPR-T-DSTLISFNPSDPKSYANYVDRIDDFLKKYNDNGQEPRMGVNIDNCWFYQPGTPTVACKFDLDGFGNCS----- 166 (300)
T ss_pred CCCc-C-cceeEEEeCCChhhHHHHHHHHHHHHHhhCcccccccccccCcccccccCCCCCceEEecHHHcCcCc-----
Confidence 9985 3 89999999999999999999999999999999888777788888988888888889999988888443
Q ss_pred ccCCCCCceeeccchhhhhhccccccccccccCCCCCCCCcccccCccccCCCCCCCCCccCCCCcEEEEEeceeeeeee
Q psy17605 352 NYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIP 431 (551)
Q Consensus 352 ~~~~g~pc~~~k~nr~~~~c~~~~~~~~~~~~~~~~~~~~~~C~f~~~~~~~Cs~d~~fGY~~g~PCI~lKLNkI~Gw~P 431 (551)
|+.|++|||++|+||||||||||+||+|
T Consensus 167 ----------------------------------------------------~~~d~~~Gy~~g~Pci~iklNri~G~~P 194 (300)
T KOG3927|consen 167 ----------------------------------------------------GSNDDNFGYSKGQPCIFLKLNRILGWKP 194 (300)
T ss_pred ----------------------------------------------------cccCCCccccCCCceEEEEeeeecCCcc
Confidence 3588899999999999999999999999
Q ss_pred eccCCCCCCCCCCChhhHHHHhhhhccCCCCCCceEEeeecCCCCCCCCccceEEecCCC-CCCccccCC---CCCCCCC
Q psy17605 432 EYYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQG-FAGYFFPYE---NSEGYLS 507 (551)
Q Consensus 432 ~~y~~~~~LP~~~P~~Lk~~I~~~~~~~~~~~n~IwVsC~g~~~~D~e~lg~I~Y~P~~G-Fp~~YFPY~---nq~gYls 507 (551)
+.|+... ++.+.|||||+|++++|.|++|.++|||.+| ||++||||+ +|++|+|
T Consensus 195 e~~~~~n----------------------~~~~~i~vsC~g~~~~D~e~i~~~~y~p~~g~f~~~Y~Py~gk~~~~~y~~ 252 (300)
T KOG3927|consen 195 ELYNRPN----------------------KEPNVIWVSCEGKNPFDYENIGKVAYFPETGDFPLEYYPYYGKKNQPGYLQ 252 (300)
T ss_pred ccCCCcC----------------------cccCceeEEecccCccchhcccceeeeccCCCCCceecCccccccCCCccC
Confidence 9886543 1457999999999999999999999999999 999999999 8999999
Q ss_pred CeEEEEcCCCCCCcEEEEEEEeecCCCccCC-CCceeEEEEEEeC
Q psy17605 508 PLVAINIPRPRTGILINIKCKAWAKNIKHLR-DGSGSVHFEIMVD 551 (551)
Q Consensus 508 PLVAVqf~n~~~n~~I~IeCkawAkNI~~d~-d~~G~V~FeL~Vd 551 (551)
|||||||.|+++|++|+|||||||+||.+++ .+.|+|+|+|+|+
T Consensus 253 plvavkf~ni~~n~~v~IeCka~a~n~~~~~~~~~g~V~f~l~i~ 297 (300)
T KOG3927|consen 253 PLVAVKFTNIPRNEEVNIECKAWAENINHDRDTFGGRVRFELLIE 297 (300)
T ss_pred ceEEEecCCCCCCceEEEEeecccccCcchhhhhcceEEEEEecc
Confidence 9999999999999999999999999999984 4689999999986
No 4
>TIGR01107 Na_K_ATPase_bet Sodium Potassium ATPase beta subunit. This model describes the Na+/K+ ATPase beta subunit in eukaryotes. Na+/K+ ATPase(also called Sodium-Potassium pump) is intimately associated with the plasma membrane. It couples the energy released by the hydrolysis of ATP to extrude 3 Na+ ions, with the concomitant uptake of 2K+ ions, against their ionic gradients.
Probab=100.00 E-value=2.5e-33 Score=284.22 Aligned_cols=101 Identities=29% Similarity=0.555 Sum_probs=94.7
Q ss_pred cCccccCCC-cEEEEEcceeeeeeeccCCCCCCCCCCCChhHHHHHhhhcccCCCCCCCCcccccchhhhhccccceeee
Q psy17605 6 KDFFCYNFL-THYFLIVSQVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQVKPNADHLHLSSVYLANYTSYVTT 84 (551)
Q Consensus 6 ~~~~gy~~~-pc~flKlN~i~gw~P~~y~~~~~lp~~mP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (551)
|+.|||++| |||||||||||||+|+ +.+
T Consensus 166 D~~fGY~~GkPCI~iKLNrIig~~P~--~~~------------------------------------------------- 194 (289)
T TIGR01107 166 DPTFGYSEGKPCIIIKMNRIIGFKPK--NPG------------------------------------------------- 194 (289)
T ss_pred CCCcCcCCCCCeEEEEeeeeeCcccC--CCC-------------------------------------------------
Confidence 457999999 9999999999999999 111
Q ss_pred eeeeccCCCcceeEeeeecCCCCcCCCcceeeecCCC-CCCccccccC---CCCCCCceEEEEcCCCCCCceeeeeeceE
Q psy17605 85 FKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQG-FAGYFFPYEN---SEGYLSPLVAINIPRPRTGISLELIRFPE 160 (551)
Q Consensus 85 ~~~~~~~~~~~IwVsC~~~~~~D~e~ig~i~YyP~~G-fp~~YFPY~n---qpgYlsPLVAVqF~n~~~~~~i~~~~~~~ 160 (551)
.|||+|++++++|.|++|+|+|||.+| ||++||||+| |++|+||||||||.++++|++|+ ||
T Consensus 195 ----------~i~v~C~~~~~~d~e~~g~i~YyP~~G~f~~~YfPY~gk~~q~~YlqPLVAVqf~~~~~n~~v~----Ve 260 (289)
T TIGR01107 195 ----------VPPVDCTGKRDEDDENIGNVEYYPMNGGFPLQYFPYYGKKLQPNYLQPLVAVQFTNLTMNTEVR----IE 260 (289)
T ss_pred ----------CCceEecccCccccccccceEECCCCCCcCcccccccCcccCcCCcCCeEEEEeecCCCCcEEE----EE
Confidence 499999999999999999999999998 9999999999 99999999999999999999999 99
Q ss_pred EEeeccccccC
Q psy17605 161 LFMYAVRISVA 171 (551)
Q Consensus 161 c~~~A~NI~~d 171 (551)
|++||+||.++
T Consensus 261 Ck~~a~NI~~~ 271 (289)
T TIGR01107 261 CKIYGENIAYS 271 (289)
T ss_pred EEEeccCCccC
Confidence 99999999995
No 5
>PF00287 Na_K-ATPase: Sodium / potassium ATPase beta chain; InterPro: IPR000402 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the beta subunit found in the P-type cation exchange ATPases located in the plasma membranes of animal cells. These P-ATPases include both H+/K+-ATPases (3.6.3.10 from EC) and Na+/K+-ATPases (3.6.3.9 from EC), which belong to the IIC subfamily of ATPases [, ]. These ATPases catalyse the hydrolysis of ATP coupled with the exchange of cations, pumping one cation out of the cell (H+ or Na+) in exchange for K+. These ATPases contain an alpha subunit (IPR005775 from INTERPRO) that is the catalytic component, and a glycosylated beta subunit that regulates the number of sodium pumps transported to the plasma membrane through the assembly of alpha/beta heterodimers. The beta subunit has three highly conserved disulphide bonds within the extracellular domain that stabilise the alpha subunit, the alpha/beta interaction, and the catalytic activity of the alpha subunit []. Different beta isoforms exist, permitting greater regulatory control. An example of a H+/K+-ATPase is the gastric pump responsible for acid secretion in the stomach, transporting protons from the cytoplasm of parietal cells to create a large pH gradient in exchange for the internalisation of potassium ions, using ATP hydrolysis to drive the pump []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0005391 sodium:potassium-exchanging ATPase activity, 0006754 ATP biosynthetic process, 0006813 potassium ion transport, 0006814 sodium ion transport, 0016020 membrane; PDB: 2XZB_B 3A3Y_B 3N2F_D 3B8E_D 3KDP_D 3N23_D.
Probab=99.97 E-value=5.9e-32 Score=274.27 Aligned_cols=107 Identities=40% Similarity=0.784 Sum_probs=65.5
Q ss_pred cCccccCCC-cEEEEEcceeeeeeeccCCCCCCCCCCCChhHHHHHhhhcccCCCCCCCCcccccchhhhhccccceeee
Q psy17605 6 KDFFCYNFL-THYFLIVSQVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQVKPNADHLHLSSVYLANYTSYVTT 84 (551)
Q Consensus 6 ~~~~gy~~~-pc~flKlN~i~gw~P~~y~~~~~lp~~mP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (551)
|+.|||+.| ||||||||||+||+|++.++.
T Consensus 166 d~~~GY~~g~PCI~lKlNri~gw~P~~~~~~------------------------------------------------- 196 (289)
T PF00287_consen 166 DPTFGYSSGKPCIFLKLNRIIGWKPEPIDEY------------------------------------------------- 196 (289)
T ss_dssp SSS----SSS-EEEEEE---BT---S-TT---------------------------------------------------
T ss_pred CCCccccCCCceEEEEcccccCccccccccc-------------------------------------------------
Confidence 357999999 999999999999999962111
Q ss_pred eeeeccCCCcceeEeeeecCCCCcCCCcceeeecCC-CCCCccccccC---CCCCCCceEEEEcCCCCCCceeeeeeceE
Q psy17605 85 FKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQ-GFAGYFFPYEN---SEGYLSPLVAINIPRPRTGISLELIRFPE 160 (551)
Q Consensus 85 ~~~~~~~~~~~IwVsC~~~~~~D~e~ig~i~YyP~~-Gfp~~YFPY~n---qpgYlsPLVAVqF~n~~~~~~i~~~~~~~ 160 (551)
+.+.|||+|++++++|.+++|.|+|||.+ |||.+||||+| |++|+||||||||.|++.|++|+ ||
T Consensus 197 -------~~~~i~v~C~~~~~~d~~~i~~i~y~P~~ggf~~~YfPy~~k~~~~~Y~~PlVAVqf~n~~~n~~i~----ve 265 (289)
T PF00287_consen 197 -------NSNKIWVSCEGENPEDKENIGPIEYYPSNGGFPLMYFPYYGKKAQPGYLSPLVAVQFTNPPRNVEIN----VE 265 (289)
T ss_dssp -------TTTEEEEEEESSSSS---S---EEEE-STSEEEGGG-SB-TTTTSTT-----EEEEESSS-SSS-EE----EE
T ss_pred -------cCCcceEEeeccccccccceeeEEEECCCCCcceeECCccCCccCCCCcCCeEEEEEecCCCCcEEE----EE
Confidence 23589999999999999999999999999 59999999999 99999999999999999999999 99
Q ss_pred EEeeccccccCC
Q psy17605 161 LFMYAVRISVAR 172 (551)
Q Consensus 161 c~~~A~NI~~d~ 172 (551)
|++||+||.+|+
T Consensus 266 Ck~wakNI~~d~ 277 (289)
T PF00287_consen 266 CKAWAKNIPYDD 277 (289)
T ss_dssp EEE-STT----S
T ss_pred EEEeCCCCCCCC
Confidence 999999999987
No 6
>KOG3927|consensus
Probab=99.95 E-value=1.4e-28 Score=250.32 Aligned_cols=109 Identities=39% Similarity=0.755 Sum_probs=100.7
Q ss_pred cCccccCCC-cEEEEEcceeeeeeeccCCCCCCCCCCCChhHHHHHhhhcccCCCCCCCCcccccchhhhhccccceeee
Q psy17605 6 KDFFCYNFL-THYFLIVSQVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQVKPNADHLHLSSVYLANYTSYVTT 84 (551)
Q Consensus 6 ~~~~gy~~~-pc~flKlN~i~gw~P~~y~~~~~lp~~mP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (551)
|++|||..+ ||||||||||+||+||.|+....
T Consensus 170 d~~~Gy~~g~Pci~iklNri~G~~Pe~~~~~n~----------------------------------------------- 202 (300)
T KOG3927|consen 170 DDNFGYSKGQPCIFLKLNRILGWKPELYNRPNK----------------------------------------------- 202 (300)
T ss_pred CCCccccCCCceEEEEeeeecCCccccCCCcCc-----------------------------------------------
Confidence 577999999 99999999999999999977521
Q ss_pred eeeeccCCCcceeEeeeecCCCCcCCCcceeeecCCC-CCCcccccc---CCCCCCCceEEEEcCCCCCCceeeeeeceE
Q psy17605 85 FKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQG-FAGYFFPYE---NSEGYLSPLVAINIPRPRTGISLELIRFPE 160 (551)
Q Consensus 85 ~~~~~~~~~~~IwVsC~~~~~~D~e~ig~i~YyP~~G-fp~~YFPY~---nqpgYlsPLVAVqF~n~~~~~~i~~~~~~~ 160 (551)
+.+++||||++++++|.|+++.++|+|.+| ||++||||+ +|++|+||||||||+|+++|++|+ ||
T Consensus 203 -------~~~~i~vsC~g~~~~D~e~i~~~~y~p~~g~f~~~Y~Py~gk~~~~~y~~plvavkf~ni~~n~~v~----Ie 271 (300)
T KOG3927|consen 203 -------EPNVIWVSCEGKNPFDYENIGKVAYFPETGDFPLEYYPYYGKKNQPGYLQPLVAVKFTNIPRNEEVN----IE 271 (300)
T ss_pred -------ccCceeEEecccCccchhcccceeeeccCCCCCceecCccccccCCCccCceEEEecCCCCCCceEE----EE
Confidence 346899999999999999999999999999 999999999 699999999999999999999999 99
Q ss_pred EEeeccccccCC
Q psy17605 161 LFMYAVRISVAR 172 (551)
Q Consensus 161 c~~~A~NI~~d~ 172 (551)
|++||+||..+.
T Consensus 272 Cka~a~n~~~~~ 283 (300)
T KOG3927|consen 272 CKAWAENINHDR 283 (300)
T ss_pred eecccccCcchh
Confidence 999999987654
No 7
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=42.73 E-value=87 Score=32.21 Aligned_cols=30 Identities=13% Similarity=0.115 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17605 215 LRKMCRIGVFYLVFYSVLAAMSGVLMWAFL 244 (551)
Q Consensus 215 ~~sW~~I~lFYliFY~~La~lFa~~m~v~l 244 (551)
..+|+.+..+.+++.+++++-|++.+|+.+
T Consensus 197 ~~~~g~f~wl~i~~~l~~~~Y~i~g~~~n~ 226 (268)
T PF09451_consen 197 SGGWGFFTWLFIILFLFLAAYLIFGSWYNY 226 (268)
T ss_pred cccccHHHHHHHHHHHHHHHHhhhhhheee
Confidence 445665555556666667777777777644
No 8
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=42.10 E-value=43 Score=25.77 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17605 221 IGVFYLVFYSVLAAMSGVLMWAFLQT 246 (551)
Q Consensus 221 I~lFYliFY~~La~lFa~~m~v~l~T 246 (551)
++=||++|-++|..+..+++.+|...
T Consensus 6 l~dfylc~l~~llflv~imliif~f~ 31 (43)
T PF11395_consen 6 LFDFYLCFLSFLLFLVIIMLIIFWFS 31 (43)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999888888877776433
No 9
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=38.34 E-value=72 Score=32.86 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=29.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q psy17605 213 QVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRW 254 (551)
Q Consensus 213 rt~~sW~~I~lFYliFY~~La~lFa~~m~v~l~TLd~~~P~~ 254 (551)
||++.|..|++=-++--+.+.++..+++..+|+++|.+.|-|
T Consensus 173 ~Tl~Ew~~i~~~~i~~~~l~v~~~l~tltl~L~a~D~~~~~~ 214 (232)
T PF10329_consen 173 RTLREWFAILLRTIIKLVLLVVVILITLTLILRAFDAHLAPP 214 (232)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 699999999877655555555555556667789999985443
No 10
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=27.35 E-value=73 Score=24.28 Aligned_cols=30 Identities=20% Similarity=0.140 Sum_probs=17.2
Q ss_pred cCcccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q psy17605 202 GNSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSG 237 (551)
Q Consensus 202 ~~~~~~~~~~~rt~~sW~~I~lFYliFY~~La~lFa 237 (551)
-||.+-..+|-||.-=|+++++| +||.+|.
T Consensus 3 ~Npn~q~VELNRTSLY~GLllif------vl~vLFs 32 (37)
T PF02419_consen 3 PNPNKQPVELNRTSLYWGLLLIF------VLAVLFS 32 (37)
T ss_dssp --TT---BE--CCHHHHHHHHHH------HHHHHHH
T ss_pred CCCCCCccchhHHhHHHHHHHHH------HHHHHhh
Confidence 46777788899999899988876 4555554
No 11
>CHL00038 psbL photosystem II protein L
Probab=26.77 E-value=83 Score=24.08 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=19.2
Q ss_pred cCcccccccccchhhhHHHHHHHH
Q psy17605 202 GNSEKGQKSIFQVLRKMCRIGVFY 225 (551)
Q Consensus 202 ~~~~~~~~~~~rt~~sW~~I~lFY 225 (551)
-||.+-..+|-||.-=|+++++|-
T Consensus 4 ~NPN~q~VELNRTSLy~GLLlifv 27 (38)
T CHL00038 4 SNPNKQNVELNRTSLYWGLLLIFV 27 (38)
T ss_pred CCCCCCccchhhhhHHHHHHHHHH
Confidence 367777788999999999888763
No 12
>PF07117 DUF1373: Protein of unknown function (DUF1373); InterPro: IPR009803 This family consists of several hypothetical proteins which seem to be specific to Oryzias latipes (Japanese ricefish). Members of this family are typically around 200 residues in length. The function of this family is unknown.
Probab=26.37 E-value=67 Score=31.90 Aligned_cols=30 Identities=30% Similarity=0.816 Sum_probs=25.2
Q ss_pred ceEEeeecCCCCCCCCccceEEecCCC---CCCccccCCCC
Q psy17605 465 TVWVSCEGENPADIENLGDIKYYPKQG---FAGYFFPYENS 502 (551)
Q Consensus 465 ~IwVsC~g~~~~D~e~lg~I~Y~P~~G---Fp~~YFPY~nq 502 (551)
.+||+|- -||.|.-||..| ++...+||.+|
T Consensus 3 ~Lwiscl--------liGsi~C~PQg~~~~~~~~~~~ysGQ 35 (210)
T PF07117_consen 3 VLWISCL--------LIGSISCFPQGGGGNMPSPMPPYSGQ 35 (210)
T ss_pred eEeeeeh--------hccceeeeccCCCCCCCCCcccccCc
Confidence 6899998 468899999774 77788999987
No 13
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=26.25 E-value=84 Score=24.14 Aligned_cols=24 Identities=17% Similarity=0.073 Sum_probs=19.1
Q ss_pred cCcccccccccchhhhHHHHHHHH
Q psy17605 202 GNSEKGQKSIFQVLRKMCRIGVFY 225 (551)
Q Consensus 202 ~~~~~~~~~~~rt~~sW~~I~lFY 225 (551)
-||.+-..+|-||.-=|+++++|-
T Consensus 5 ~NpN~q~VELNRTSLy~GlLlifv 28 (39)
T PRK00753 5 PNPNKQPVELNRTSLYLGLLLVFV 28 (39)
T ss_pred CCCCCCCceechhhHHHHHHHHHH
Confidence 367777788999998999888763
No 14
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.00 E-value=2e+02 Score=29.08 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccccCcccCCCCcceecCCCCCCCCcceEEEEEcCCCccHHHHHHHHHHhhHhcCC
Q psy17605 230 SVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKR 309 (551)
Q Consensus 230 ~~La~lFa~~m~v~l~TLd~~~P~~q~d~slig~~PGL~~rP~~~~~~~~s~lI~fn~sd~~s~~~yv~~L~~FL~~Y~~ 309 (551)
++||..+++.+.+.+..|+|+.|..+... +++ +.++.|..+ ++-...-+-++.+|+.|.+
T Consensus 17 iLLAln~l~~~~i~~~vlsp~ee~t~~~~----a~~--------------~~~~~fqit--ttr~~LN~li~syl~~~~t 76 (197)
T COG4698 17 ILLALNTLLAVLIALFVLSPREEPTHLED----ASE--------------KSEKSFQIT--TTRSQLNELINSYLEDYQT 76 (197)
T ss_pred HHHHHHHHHHHHhheeeccCCCCCchhhc----cCc--------------ccceeEEEE--ccHHHHHHHHHHHHHHhhh
Confidence 44555555556666556888875443222 222 234445554 2334555666666776665
Q ss_pred C
Q psy17605 310 P 310 (551)
Q Consensus 310 ~ 310 (551)
.
T Consensus 77 e 77 (197)
T COG4698 77 E 77 (197)
T ss_pred c
Confidence 4
No 15
>PF14333 DUF4389: Domain of unknown function (DUF4389)
Probab=22.03 E-value=1.9e+02 Score=24.73 Aligned_cols=33 Identities=9% Similarity=0.142 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17605 214 VLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQT 246 (551)
Q Consensus 214 t~~sW~~I~lFYliFY~~La~lFa~~m~v~l~T 246 (551)
++.||...++|+++++....+++++++..++..
T Consensus 5 ~~~R~l~mi~~~ivl~~~~~~~~~~~~~q~~~~ 37 (80)
T PF14333_consen 5 VWLRLLLMIPFAIVLSLASIVLGVLVLIQWFAI 37 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999988888887777655543
No 16
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.00 E-value=66 Score=29.46 Aligned_cols=10 Identities=0% Similarity=0.208 Sum_probs=5.2
Q ss_pred hHHHHHHHHH
Q psy17605 217 KMCRIGVFYL 226 (551)
Q Consensus 217 sW~~I~lFYl 226 (551)
||+++++|-+
T Consensus 1 RW~l~~iii~ 10 (130)
T PF12273_consen 1 RWVLFAIIIV 10 (130)
T ss_pred CeeeHHHHHH
Confidence 4665554433
No 17
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=20.08 E-value=93 Score=32.90 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q psy17605 227 VFYSVLAAMSGVLMWAFLQTLDP 249 (551)
Q Consensus 227 iFY~~La~lFa~~m~v~l~TLd~ 249 (551)
++|++|+|++++.+|...|.+..
T Consensus 209 FLY~~l~a~~~l~l~~~~~~l~~ 231 (285)
T PF03896_consen 209 FLYLFLAALGVLGLYFVYQFLPS 231 (285)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888998999988887654
Done!