Query psy17605
Match_columns 551
No_of_seqs 253 out of 566
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 18:22:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17605.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17605hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kdp_B Sodium/potassium-transp 100.0 1.8E-85 6.2E-90 661.3 16.8 271 203-551 1-285 (286)
2 2zxe_B Na+,K+-ATPase beta subu 100.0 3E-83 1E-87 649.9 21.3 281 196-551 12-304 (305)
3 3ixz_B Potassium-transporting 100.0 1.3E-81 4.3E-86 634.4 26.7 266 195-551 15-289 (290)
4 2zxe_B Na+,K+-ATPase beta subu 100.0 1.9E-35 6.5E-40 300.1 8.6 126 6-181 165-302 (305)
5 3kdp_B Sodium/potassium-transp 100.0 1.7E-35 5.9E-40 298.2 6.8 126 6-182 147-284 (286)
6 3ixz_B Potassium-transporting 100.0 5E-32 1.7E-36 273.5 11.6 101 6-171 167-272 (290)
7 2wh6_A Early antigen protein R 23.6 43 0.0015 31.8 2.8 27 209-235 101-128 (173)
8 1xl4_A Inward rectifier potass 15.4 1.2E+02 0.004 30.5 4.0 24 216-239 44-67 (301)
9 3rjm_B Caspase-2; caspase-2, c 13.6 95 0.0033 27.2 2.5 25 410-434 80-104 (117)
10 3spc_A Inward-rectifier K+ cha 12.3 1.7E+02 0.0059 30.1 4.3 27 216-242 42-68 (343)
No 1
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=100.00 E-value=1.8e-85 Score=661.32 Aligned_cols=271 Identities=25% Similarity=0.506 Sum_probs=231.6
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCcccCCCCcceecCCCCCCCCcceE
Q psy17605 203 NSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVGSSL 282 (551)
Q Consensus 203 ~~~~~~~~~~rt~~sW~~I~lFYliFY~~La~lFa~~m~v~l~TLd~~~P~~q~d~slig~~PGL~~rP~~~~~~~~s~l 282 (551)
||++||+ ||||++||++|+|||||||+|||||||+||||||||||+++|+|| |++ ++||||+||++. +++
T Consensus 1 Np~t~~~-lGRT~~sW~~IllFYliFY~~La~lFa~~m~v~l~TLd~~~Pkyq-d~~---~~PGL~~~P~~~-----~~e 70 (286)
T 3kdp_B 1 NSEKKEF-LGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQ-DRV---APPGLTQIPQSQ-----KTE 70 (286)
T ss_dssp CCCCCTT-SCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHGGGSCSCSSSCSCC-TTT---CSCCCCBSSCCS-----SSE
T ss_pred CCCCCce-eCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCccc-CCC---CCCcceeccCCC-----ceE
Confidence 7999999 999999999999999999999999999999999999999999999 666 899999999984 578
Q ss_pred EEEEcCCCccHHHHHHHHHHhhHhcCCCCCCCCCCCC-ccCCCC--CCCCCCCcceeecccccCCccccCccccCCCCCc
Q psy17605 283 IWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQN-IYNCDY--DRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPC 359 (551)
Q Consensus 283 I~fn~sd~~s~~~yv~~L~~FL~~Y~~~~~~~~~~~n-~~~C~~--~~~~~~~~~C~F~~~~lg~csg~~~f~~~~g~pc 359 (551)
|+|+++|++||+.|+++|++||++|+++.|. +++ ..+|.. ++. ..-|
T Consensus 71 I~f~~sd~~s~~~yv~~L~~FL~~Y~~~~q~---~~~~~~~C~~~~~~~---~~~~------------------------ 120 (286)
T 3kdp_B 71 ISFRPNDPQSYESYVVSIVRFLEKYKDLAQK---DDMIFEDCGNVPSEL---KERG------------------------ 120 (286)
T ss_dssp EECCSSCTTTTHHHHHHHHHHHTTCCTTTSC---STTTEECCCSSCCCC---CCCC------------------------
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhcchhhc---ccccccccccCcccc---eecc------------------------
Confidence 9999999999999999999999999987552 122 234521 110 0000
Q ss_pred eeeccchhhhhhccccccccccccCCCCCCCCcccccCccccCCCC--CCCCCccCCCCcEEEEEeceeeeeeeeccCCC
Q psy17605 360 LFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVKLFDPCT--EENHFNYHKSGPCLFLKLNKVYGWIPEYYNDT 437 (551)
Q Consensus 360 ~~~k~nr~~~~c~~~~~~~~~~~~~~~~~~~~~~C~f~~~~~~~Cs--~d~~fGY~~g~PCI~lKLNkI~Gw~P~~y~~~ 437 (551)
|++.+++.++||+|+++++++|| .|++|||++|+||||||||||+||+|++|.
T Consensus 121 -----------------------~~~~~~~~~~~C~F~~~~lg~Csg~~d~~fGY~~g~PCI~lKlNRIig~~P~~~~-- 175 (286)
T 3kdp_B 121 -----------------------EYNNERGERKVCRSRLEWLGNCSGLNDETYGYKDGKPCVIIKLNRVLGFKPKPPK-- 175 (286)
T ss_dssp -----------------------CSSSSSSSCCEECCCGGGSTTSCCCCSSSCCCCSSSCCBCBCCCCCBTCCCCCCC--
T ss_pred -----------------------ccccCCCCCceeEeccccccCCCCCCCCCCCcCCCCCeEEEEeccccceeecccC--
Confidence 22334455555666666556888 899999999999999999999999999873
Q ss_pred CCCCCCCCh-hhHHHHhhhhccCCCCCCceEEeeecCCCCCCCCccceEEecCC---CCCCccccCCCC---CCCCCCeE
Q psy17605 438 QNLPRGMPG-QLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQ---GFAGYFFPYENS---EGYLSPLV 510 (551)
Q Consensus 438 ~~LP~~~P~-~Lk~~I~~~~~~~~~~~n~IwVsC~g~~~~D~e~lg~I~Y~P~~---GFp~~YFPY~nq---~gYlsPLV 510 (551)
.+.|++||+ +|+ .+.|||+|+|++++|.|++|+|+|||.+ |||++||||+|+ ++|+||||
T Consensus 176 ~~~~~~~p~~~l~-------------~~~i~V~C~~~~~~d~e~ig~i~YyP~~g~~gfp~~YfPYygk~~~~~YlqPLV 242 (286)
T 3kdp_B 176 NESLETYPVMKYN-------------PYVLPVHCTGKRDEDKEKVGTMEYFGLGGYPGFPLQYYPYYGKLLQPKYLQPLM 242 (286)
T ss_dssp SSSCSSCSSSCCT-------------TTBCCEEEESSSSSCCCCCCCBCCCCTTSCSSCBTTSCSBCTTTSCTTCCCCCC
T ss_pred CCCcccccchhcc-------------CCceeeeccCcCccccccccceEEcCCCCCCCCCcccCCCCCCcCCCCCcCCeE
Confidence 334688998 665 2689999999999999999999999997 699999999997 99999999
Q ss_pred EEEcCCCCCCcEEEEEEEeecCCCccC-CCC-ceeEEEEEEeC
Q psy17605 511 AINIPRPRTGILINIKCKAWAKNIKHL-RDG-SGSVHFEIMVD 551 (551)
Q Consensus 511 AVqf~n~~~n~~I~IeCkawAkNI~~d-~d~-~G~V~FeL~Vd 551 (551)
||||.|+++|++|+|||||||+||+++ +|+ +|||+|+|+|.
T Consensus 243 AVqf~n~~~n~~v~VeCk~~a~NI~~~~~d~~~G~v~fkl~i~ 285 (286)
T 3kdp_B 243 AVQFTNLTMDTEIRIECKAYGENIGYSEKDRFQGRFDVKIEVK 285 (286)
T ss_dssp CBCBCCSCCSCCCCBEEEECSTTCCCCSSCTTTTSCCBEEECC
T ss_pred EEEeecCCCCcEEEEEEEEeccCCCcCCCccccceEEEEEEec
Confidence 999999999999999999999999994 665 89999999984
No 2
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=100.00 E-value=3e-83 Score=649.94 Aligned_cols=281 Identities=24% Similarity=0.463 Sum_probs=219.4
Q ss_pred cccccccCcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCcccCCCCcceecCCCCC
Q psy17605 196 HIHKLRGNSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVE 275 (551)
Q Consensus 196 ~~~~~~~~~~~~~~~~~rt~~sW~~I~lFYliFY~~La~lFa~~m~v~l~TLd~~~P~~q~d~slig~~PGL~~rP~~~~ 275 (551)
...+...||++||+ ||||++||++|+|||||||+|||||||+|||+||||||+++|+||++ | ++||||+||.+
T Consensus 12 ~~k~f~~n~~~~~~-lGRT~~sW~~IllFYliFY~~La~lF~~~m~v~l~tl~~~~Pk~q~~---i-~~PGL~~~P~~-- 84 (305)
T 2zxe_B 12 GWKKFLWDSEKKEF-LGRTGSSWFKIFLFYLIFYGCLAGIFIGTIQVLLLTLSDFEPKYQDR---V-APPGLSHAPYA-- 84 (305)
T ss_dssp -----------------CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSCSCCTT---T-CSCCBCCSSCC--
T ss_pred hhhhheeCcccCeE-ecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCccccC---C-CCCeeeEecCC--
Confidence 35678899999999 99999999999999999999999999999999999999999999954 2 79999999997
Q ss_pred CCCcceEEEEEcCCCccHHHHHHHHHHhhHhcCCCCCCCCCCCC--ccCCCCCCCCCCCcceeecccccCCccccCcccc
Q psy17605 276 SDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQN--IYNCDYDRPPGRGQVCDVDVKLFDPCTEENHFNY 353 (551)
Q Consensus 276 ~~~~s~lI~fn~sd~~s~~~yv~~L~~FL~~Y~~~~~~~~~~~n--~~~C~~~~~~~~~~~C~F~~~~lg~csg~~~f~~ 353 (551)
++++|+|+++|+++|+.||++|++||++|+++.| +++ ..+|+.... +.+.-|
T Consensus 85 ---~~~~I~f~~~~~~s~~~yv~~l~~FL~~Y~~~~q----~~~~~~~~C~~~~~---------~~~~~g---------- 138 (305)
T 2zxe_B 85 ---IKTEISFSISNPKSYESFVKSMHKLMDLYNESSQ----AGNSPFEDCSDTPA---------DYIKRG---------- 138 (305)
T ss_dssp ---SSSEEEECTTCGGGTHHHHHHHHHHHGGGCGGGS----CSTTTEECCCSSCC---------CCCCCS----------
T ss_pred ---CCeEEEEeCCChhhHHHHHHHHHHHHHHhcchhh----ccccccccCCCccc---------cccccc----------
Confidence 3799999999999999999999999999998765 233 788984211 011111
Q ss_pred CCCCCceeeccchhhhhhccccccccccccCCCCCCCCcccccCccccCCCCC--CCCCccCCCCcEEEEEeceeeeeee
Q psy17605 354 HKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVKLFDPCTE--ENHFNYHKSGPCLFLKLNKVYGWIP 431 (551)
Q Consensus 354 ~~g~pc~~~k~nr~~~~c~~~~~~~~~~~~~~~~~~~~~~C~f~~~~~~~Cs~--d~~fGY~~g~PCI~lKLNkI~Gw~P 431 (551)
+|..+++.++||+|+++++++|+. |++|||++|+||||||||||+||+|
T Consensus 139 -----------------------------~~~~~~~~~~~C~F~~~~Lg~Cs~~~d~~fGY~~g~PCI~lKlNrI~g~~P 189 (305)
T 2zxe_B 139 -----------------------------DLDDSQGQKKACRFSRMWLKNCSGLDDTTYGYAEGKPCVVAKLNRIIGFYP 189 (305)
T ss_dssp -----------------------------SSCSSSSSCCEECCCGGGSTTC--------CCCSSSCCCEEEBCCCBTCCC
T ss_pred -----------------------------ccccCCCCCceeEeechhccCCCCCCCCCCCcCCCCCeEEEEecceecccc
Confidence 255566677777777777778984 5569999999999999999999999
Q ss_pred eccCCCCCCCCCCChhhHHHHhhhhccCCCCCCceEEeeecCCCCCCCCccceEEecCC---CCCCccccCCC---CCCC
Q psy17605 432 EYYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQ---GFAGYFFPYEN---SEGY 505 (551)
Q Consensus 432 ~~y~~~~~LP~~~P~~Lk~~I~~~~~~~~~~~n~IwVsC~g~~~~D~e~lg~I~Y~P~~---GFp~~YFPY~n---q~gY 505 (551)
++|++ .+||+++ |+++++ .+.|||+|+|++++|.|++|+|+|||.+ |||++||||+| |++|
T Consensus 190 ~~~~~-~~lP~~~---l~~~~~---------~~~I~v~C~~~~~~d~e~~g~i~Y~P~~g~~gfp~~YfPY~gk~~~~~Y 256 (305)
T 2zxe_B 190 KPLKN-TTDLPEE---LQANYN---------QYVLPLRCAAKREEDREKIGSIEYFGLGGYAGFPLQYYPYYGKRLQKKY 256 (305)
T ss_dssp CCCCT-TSCCTTT---TTTCCT---------TTEEEEEEEC-----CCCCSCEEEECGGGCSEEEGGGCSBCCTTTCTTC
T ss_pred cCCcc-ccccHHH---Hhhhhc---------cCCCceEeeccccccccccCCeEEECCCCCCCcCccccCCCCccCCcCC
Confidence 98765 5555443 255553 3699999999999999999999999998 89999999999 9999
Q ss_pred CCCeEEEEcCCCCCCcEEEEEEEeecCCCccC-CCC-ceeEEEEEEeC
Q psy17605 506 LSPLVAINIPRPRTGILINIKCKAWAKNIKHL-RDG-SGSVHFEIMVD 551 (551)
Q Consensus 506 lsPLVAVqf~n~~~n~~I~IeCkawAkNI~~d-~d~-~G~V~FeL~Vd 551 (551)
+||||||||.|+++|++|+|||||||+||.++ +|+ .|+|||+|+||
T Consensus 257 l~PLVAVqf~n~~~n~~v~VeCka~a~NI~~~~~d~~~G~v~fkl~i~ 304 (305)
T 2zxe_B 257 LQPLLAIQFTNLTQNMELRIECKVYGENIDYSEKDRFRGRFEVKIEVK 304 (305)
T ss_dssp CCCEEEEEECCSCCSSCEEEEEEECCSSCCCCSSCTTSSBCCEEEEEC
T ss_pred cCCeEEEEeecCCCCCEEEEEEEEeccCCCcCCCccccceEEEEEEec
Confidence 99999999999999999999999999999886 664 99999999997
No 3
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=100.00 E-value=1.3e-81 Score=634.44 Aligned_cols=266 Identities=21% Similarity=0.450 Sum_probs=231.5
Q ss_pred ccccccccCcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCcccCCCCcceecCCCC
Q psy17605 195 SHIHKLRGNSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPV 274 (551)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~rt~~sW~~I~lFYliFY~~La~lFa~~m~v~l~TLd~~~P~~q~d~slig~~PGL~~rP~~~ 274 (551)
....+...||++||+ ||||++||++|+|||||||+|||||||+|||+||||||+++|+||++. ++||||+||++.
T Consensus 15 ~~~k~f~~N~~t~~~-lGRT~~sW~~IllFYliFY~~LaglFa~~m~v~l~Tld~~~Pkyqd~~----~~PGL~~~P~~~ 89 (290)
T 3ixz_B 15 EEFQRYCWNPDTGQM-LGRTLSRWVWISLYYVAFYVVMSGIFALCIYVLMRTIDPYTPDYQDQL----KSPGVTLRPDVY 89 (290)
T ss_pred hhhHhhEEcCCCCce-eCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccc----CCCcceecCCCC
Confidence 456778999999999 999999999999999999999999999999999999999999999542 799999999985
Q ss_pred CCCCcceEEEEEcCCCccHHHHHHHHHHhhHhcCCCCCCCCCCCCccCCCCCCCCCCCcceeecccccCCccccCccccC
Q psy17605 275 ESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQVCDVDVKLFDPCTEENHFNYH 354 (551)
Q Consensus 275 ~~~~~s~lI~fn~sd~~s~~~yv~~L~~FL~~Y~~~~~~~~~~~n~~~C~~~~~~~~~~~C~F~~~~lg~csg~~~f~~~ 354 (551)
++++++|+|+++|++||+.|+++|++||++|+++.| ++..+|+.++. |...
T Consensus 90 --~~~~~~I~f~~sd~~s~~~yv~~l~~FL~~Y~~~~q-----~~~~~C~~~~~--------~~q~-------------- 140 (290)
T 3ixz_B 90 --GEKGLDISYNVSDSTTWAGLAHTLHRFLAGYSPAAQ-----EGSINCTSEKY--------FFQE-------------- 140 (290)
T ss_pred --CCcceEEEEeCCCchHHHHHHHHHHHHHHHhCchhc-----cCcccCCCccc--------cccc--------------
Confidence 567899999999999999999999999999999754 34567876531 0000
Q ss_pred CCCCceeeccchhhhhhccccccccccccCCCCCCCCcccccCccccCCCCC--CCCCccCCCCcEEEEEeceeeeeeee
Q psy17605 355 KSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVKLFDPCTE--ENHFNYHKSGPCLFLKLNKVYGWIPE 432 (551)
Q Consensus 355 ~g~pc~~~k~nr~~~~c~~~~~~~~~~~~~~~~~~~~~~C~f~~~~~~~Cs~--d~~fGY~~g~PCI~lKLNkI~Gw~P~ 432 (551)
+++.+++..+||+|+++++++|+. |++|||++|+||||||||||+||+|+
T Consensus 141 ----------------------------~~~~~~~~~~~C~F~~~~lg~Csg~~d~~fGY~~g~PCI~iKlNrIig~~P~ 192 (290)
T 3ixz_B 141 ----------------------------SFLAPNHTKFSCKFTADMLQNCSGRPDPTFGFAEGKPCFIIKMNRIVKFLPG 192 (290)
T ss_pred ----------------------------cccCCCCCCceeeccccccCcCCCCCCCCCCcCCCCceEEEEeceEEeeecC
Confidence 122334445566666666668884 89999999999999999999999998
Q ss_pred ccCCCCCCCCCCChhhHHHHhhhhccCCCCCCceEEeeecCCCCCCCCccceEEecCC-CCCCccccCC---CCCCCCCC
Q psy17605 433 YYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQ-GFAGYFFPYE---NSEGYLSP 508 (551)
Q Consensus 433 ~y~~~~~LP~~~P~~Lk~~I~~~~~~~~~~~n~IwVsC~g~~~~D~e~lg~I~Y~P~~-GFp~~YFPY~---nq~gYlsP 508 (551)
.+ +.+||+|++++++|.+++|+|+|||.+ |||++||||+ +|++|+||
T Consensus 193 ~~-----------------------------~~~~V~C~~~~~~~~~~~~~i~YyP~~ggf~~~YfPYygk~~q~~YlqP 243 (290)
T 3ixz_B 193 NS-----------------------------TAPRVDCAFLDQPRDGPPLQVEYFPANGTYSLHYFPYYGKKAQPHYSNP 243 (290)
T ss_pred CC-----------------------------CCCcceecCCCcccccCcceEEECCCCCCcCceeCCccCCcCCcCCcCC
Confidence 53 258999999997777888899999998 8999999999 68999999
Q ss_pred eEEEEcCCCCCCcEEEEEEEeecCCCccC--CCC-ceeEEEEEEeC
Q psy17605 509 LVAINIPRPRTGILINIKCKAWAKNIKHL--RDG-SGSVHFEIMVD 551 (551)
Q Consensus 509 LVAVqf~n~~~n~~I~IeCkawAkNI~~d--~d~-~G~V~FeL~Vd 551 (551)
||||||.|+++|++|+|||||||+||++| +|+ .|+|+|+|+|+
T Consensus 244 LVAVqf~n~~~n~~v~VeCk~~a~NI~~d~~~d~~~G~V~Fkl~i~ 289 (290)
T 3ixz_B 244 LVAAKLLNVPRNRDVVIVCKILAEHVSFDNPHDPYEGKVEFKLKIQ 289 (290)
T ss_pred eEEEEEecCCCCcEEEEEEEEeccCCccCCCCCCccceEEEEEEec
Confidence 99999999999999999999999999997 786 99999999986
No 4
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=100.00 E-value=1.9e-35 Score=300.15 Aligned_cols=126 Identities=18% Similarity=0.352 Sum_probs=99.0
Q ss_pred cCccccCCC-cEEEEEcceeeeeeeccCCCCCCCCCCCChhH-HHHHhhhcccCCCCCCCCcccccchhhhhccccceee
Q psy17605 6 KDFFCYNFL-THYFLIVSQVYGWIPEYYNDTQNLPRGMPGQL-RNYIENVARTNPKQVKPNADHLHLSSVYLANYTSYVT 83 (551)
Q Consensus 6 ~~~~gy~~~-pc~flKlN~i~gw~P~~y~~~~~lp~~mP~~l-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (551)
|++|||++| ||||||||||+||+|++|++ ++ ||++| +.++
T Consensus 165 d~~fGY~~g~PCI~lKlNrI~g~~P~~~~~-~~----lP~~~l~~~~--------------------------------- 206 (305)
T 2zxe_B 165 DTTYGYAEGKPCVVAKLNRIIGFYPKPLKN-TT----DLPEELQANY--------------------------------- 206 (305)
T ss_dssp ----CCCSSSCCCEEEBCCCBTCCCCCCCT-TS----CCTTTTTTCC---------------------------------
T ss_pred CCCCCcCCCCCeEEEEecceecccccCCcc-cc----ccHHHHhhhh---------------------------------
Confidence 456999999 99999999999999998765 44 45544 3222
Q ss_pred eeeeeccCCCcceeEeeeecCCCCcCCCcceeeecCC---CCCCccccccC---CCCCCCceEEEEcCCCCCCceeeeee
Q psy17605 84 TFKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQ---GFAGYFFPYEN---SEGYLSPLVAINIPRPRTGISLELIR 157 (551)
Q Consensus 84 ~~~~~~~~~~~~IwVsC~~~~~~D~e~ig~i~YyP~~---Gfp~~YFPY~n---qpgYlsPLVAVqF~n~~~~~~i~~~~ 157 (551)
+.+.|||+|++++++|.|++|+|+|||.+ |||++||||+| |++|+||||||||.|+++|++|+
T Consensus 207 --------~~~~I~v~C~~~~~~d~e~~g~i~Y~P~~g~~gfp~~YfPY~gk~~~~~Yl~PLVAVqf~n~~~n~~v~--- 275 (305)
T 2zxe_B 207 --------NQYVLPLRCAAKREEDREKIGSIEYFGLGGYAGFPLQYYPYYGKRLQKKYLQPLLAIQFTNLTQNMELR--- 275 (305)
T ss_dssp --------TTTEEEEEEEC-----CCCCSCEEEECGGGCSEEEGGGCSBCCTTTCTTCCCCEEEEEECCSCCSSCEE---
T ss_pred --------ccCCCceEeeccccccccccCCeEEECCCCCCCcCccccCCCCccCCcCCcCCeEEEEeecCCCCCEEE---
Confidence 12589999999999999999999999998 79999999999 99999999999999999999999
Q ss_pred ceEEEeeccccccC----CccceeEEee
Q psy17605 158 FPELFMYAVRISVA----RYTSLQLELT 181 (551)
Q Consensus 158 ~~~c~~~A~NI~~d----~~~~~~~~~~ 181 (551)
|||++||+||..| +.-+...||+
T Consensus 276 -VeCka~a~NI~~~~~d~~~G~v~fkl~ 302 (305)
T 2zxe_B 276 -IECKVYGENIDYSEKDRFRGRFEVKIE 302 (305)
T ss_dssp -EEEEECCSSCCCCSSCTTSSBCCEEEE
T ss_pred -EEEEEeccCCCcCCCccccceEEEEEE
Confidence 9999999999763 2344555554
No 5
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=100.00 E-value=1.7e-35 Score=298.22 Aligned_cols=126 Identities=19% Similarity=0.358 Sum_probs=109.5
Q ss_pred cCccccCCC-cEEEEEcceeeeeeeccCCCCCCCCCCCCh-hHHHHHhhhcccCCCCCCCCcccccchhhhhccccceee
Q psy17605 6 KDFFCYNFL-THYFLIVSQVYGWIPEYYNDTQNLPRGMPG-QLRNYIENVARTNPKQVKPNADHLHLSSVYLANYTSYVT 83 (551)
Q Consensus 6 ~~~~gy~~~-pc~flKlN~i~gw~P~~y~~~~~lp~~mP~-~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (551)
|+.|||++| ||||||||||+||+|+.| +++.|++||+ +|+
T Consensus 147 d~~fGY~~g~PCI~lKlNRIig~~P~~~--~~~~~~~~p~~~l~------------------------------------ 188 (286)
T 3kdp_B 147 DETYGYKDGKPCVIIKLNRVLGFKPKPP--KNESLETYPVMKYN------------------------------------ 188 (286)
T ss_dssp SSSCCCCSSSCCBCBCCCCCBTCCCCCC--CSSSCSSCSSSCCT------------------------------------
T ss_pred CCCCCcCCCCCeEEEEeccccceeeccc--CCCCcccccchhcc------------------------------------
Confidence 678999999 999999999999999987 3445788998 554
Q ss_pred eeeeeccCCCcceeEeeeecCCCCcCCCcceeeecCC---CCCCccccccCC---CCCCCceEEEEcCCCCCCceeeeee
Q psy17605 84 TFKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQ---GFAGYFFPYENS---EGYLSPLVAINIPRPRTGISLELIR 157 (551)
Q Consensus 84 ~~~~~~~~~~~~IwVsC~~~~~~D~e~ig~i~YyP~~---Gfp~~YFPY~nq---pgYlsPLVAVqF~n~~~~~~i~~~~ 157 (551)
.+.|||+|++++++|.|++|+|+|||.+ |||++||||+|+ ++|+||||||||.|+++|++|+
T Consensus 189 ---------~~~i~V~C~~~~~~d~e~ig~i~YyP~~g~~gfp~~YfPYygk~~~~~YlqPLVAVqf~n~~~n~~v~--- 256 (286)
T 3kdp_B 189 ---------PYVLPVHCTGKRDEDKEKVGTMEYFGLGGYPGFPLQYYPYYGKLLQPKYLQPLMAVQFTNLTMDTEIR--- 256 (286)
T ss_dssp ---------TTBCCEEEESSSSSCCCCCCCBCCCCTTSCSSCBTTSCSBCTTTSCTTCCCCCCCBCBCCSCCSCCCC---
T ss_pred ---------CCceeeeccCcCccccccccceEEcCCCCCCCCCcccCCCCCCcCCCCCcCCeEEEEeecCCCCcEEE---
Confidence 1479999999999999999999999997 599999999995 9999999999999999999999
Q ss_pred ceEEEeecccccc-C---CccceeEEeee
Q psy17605 158 FPELFMYAVRISV-A---RYTSLQLELTQ 182 (551)
Q Consensus 158 ~~~c~~~A~NI~~-d---~~~~~~~~~~~ 182 (551)
|||++||+||.+ | +.-+...||+-
T Consensus 257 -VeCk~~a~NI~~~~~d~~~G~v~fkl~i 284 (286)
T 3kdp_B 257 -IECKAYGENIGYSEKDRFQGRFDVKIEV 284 (286)
T ss_dssp -BEEEECSTTCCCCSSCTTTTSCCBEEEC
T ss_pred -EEEEEeccCCCcCCCccccceEEEEEEe
Confidence 999999999998 2 23345555543
No 6
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=99.97 E-value=5e-32 Score=273.55 Aligned_cols=101 Identities=17% Similarity=0.298 Sum_probs=92.8
Q ss_pred cCccccCCC-cEEEEEcceeeeeeeccCCCCCCCCCCCChhHHHHHhhhcccCCCCCCCCcccccchhhhhccccceeee
Q psy17605 6 KDFFCYNFL-THYFLIVSQVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQVKPNADHLHLSSVYLANYTSYVTT 84 (551)
Q Consensus 6 ~~~~gy~~~-pc~flKlN~i~gw~P~~y~~~~~lp~~mP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (551)
|+.|||++| ||||||||||+||+|+.|
T Consensus 167 d~~fGY~~g~PCI~iKlNrIig~~P~~~---------------------------------------------------- 194 (290)
T 3ixz_B 167 DPTFGFAEGKPCFIIKMNRIVKFLPGNS---------------------------------------------------- 194 (290)
T ss_pred CCCCCcCCCCceEEEEeceEEeeecCCC----------------------------------------------------
Confidence 678999999 999999999999999843
Q ss_pred eeeeccCCCcceeEeeeecCCCCcCCCcceeeecCCC-CCCccccccC---CCCCCCceEEEEcCCCCCCceeeeeeceE
Q psy17605 85 FKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQG-FAGYFFPYEN---SEGYLSPLVAINIPRPRTGISLELIRFPE 160 (551)
Q Consensus 85 ~~~~~~~~~~~IwVsC~~~~~~D~e~ig~i~YyP~~G-fp~~YFPY~n---qpgYlsPLVAVqF~n~~~~~~i~~~~~~~ 160 (551)
+.|||+|++++++|.+++|+|+|||.+| ||++||||+| |++|+||||||||.|+++|++|+ ||
T Consensus 195 ---------~~~~V~C~~~~~~~~~~~~~i~YyP~~ggf~~~YfPYygk~~q~~YlqPLVAVqf~n~~~n~~v~----Ve 261 (290)
T 3ixz_B 195 ---------TAPRVDCAFLDQPRDGPPLQVEYFPANGTYSLHYFPYYGKKAQPHYSNPLVAAKLLNVPRNRDVV----IV 261 (290)
T ss_pred ---------CCCcceecCCCcccccCcceEEECCCCCCcCceeCCccCCcCCcCCcCCeEEEEEecCCCCcEEE----EE
Confidence 1489999999876667788999999995 9999999995 99999999999999999999999 99
Q ss_pred EEeeccccccC
Q psy17605 161 LFMYAVRISVA 171 (551)
Q Consensus 161 c~~~A~NI~~d 171 (551)
|++||+||.+|
T Consensus 262 Ck~~a~NI~~d 272 (290)
T 3ixz_B 262 CKILAEHVSFD 272 (290)
T ss_pred EEEeccCCccC
Confidence 99999999986
No 7
>2wh6_A Early antigen protein R; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Human herpesvirus 4} PDB: 2v6q_A 2xpx_A 1q59_A
Probab=23.63 E-value=43 Score=31.80 Aligned_cols=27 Identities=11% Similarity=0.050 Sum_probs=18.9
Q ss_pred ccccchhh-hHHHHHHHHHHHHHHHHHH
Q psy17605 209 KSIFQVLR-KMCRIGVFYLVFYSVLAAM 235 (551)
Q Consensus 209 ~~~~rt~~-sW~~I~lFYliFY~~La~l 235 (551)
.+|||++. .|+||+.||.+-++.+++.
T Consensus 101 ~ELF~dG~INWGRIVALfaF~~~al~v~ 128 (173)
T 2wh6_A 101 LEIFHRGDPSLGRALAWMAWCMHACRTL 128 (173)
T ss_dssp HHHHSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcceehhhhhhcccceehh
Confidence 46899985 9999998775434445433
No 8
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=15.44 E-value=1.2e+02 Score=30.48 Aligned_cols=24 Identities=13% Similarity=-0.022 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q psy17605 216 RKMCRIGVFYLVFYSVLAAMSGVL 239 (551)
Q Consensus 216 ~sW~~I~lFYliFY~~La~lFa~~ 239 (551)
.+|.+++++.++.|+++..+||+.
T Consensus 44 ~~~~~ll~~~~~~~~~~~l~fa~l 67 (301)
T 1xl4_A 44 VSWPVFITLITGLYLVTNALFALA 67 (301)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999998888776
No 9
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=13.61 E-value=95 Score=27.16 Aligned_cols=25 Identities=16% Similarity=0.006 Sum_probs=21.1
Q ss_pred CccCCCCcEEEEEeceeeeeeeecc
Q psy17605 410 FNYHKSGPCLFLKLNKVYGWIPEYY 434 (551)
Q Consensus 410 fGY~~g~PCI~lKLNkI~Gw~P~~y 434 (551)
++-.+--||+.--|.|-+-+.|..+
T Consensus 80 ~~~~KQmP~~~stLtK~lyf~pg~~ 104 (117)
T 3rjm_B 80 FHRCKEMSEYCSTLCRHLYLFPGHP 104 (117)
T ss_dssp TTTCBCCCEEEECCCSBCCCCTTCC
T ss_pred cCCeEEeeEEEEeECceEEeCCCCc
Confidence 4556788999999999999999864
No 10
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=12.28 E-value=1.7e+02 Score=30.10 Aligned_cols=27 Identities=11% Similarity=0.310 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17605 216 RKMCRIGVFYLVFYSVLAAMSGVLMWA 242 (551)
Q Consensus 216 ~sW~~I~lFYliFY~~La~lFa~~m~v 242 (551)
.+|..+++.+++.|+++-.+||+.-|.
T Consensus 42 l~Wr~~ll~f~~~y~~swl~Fally~~ 68 (343)
T 3spc_A 42 IRWRYMLLLFSLAFLVSWLLFGLIFWL 68 (343)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999999999877655
Done!