Query psy17605
Match_columns 551
No_of_seqs 253 out of 566
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 18:22:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17605.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17605hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 28.6 34 0.0024 23.1 4.0 29 203-237 4-32 (37)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 19.9 42 0.003 21.5 2.9 17 223-239 4-20 (30)
3 d1zx8a1 b.62.1.3 (A:1-124) Hyp 13.7 48 0.0035 27.5 2.7 35 108-142 60-98 (124)
4 d2e74e1 f.23.24.1 (E:1-32) Pet 9.1 1.7E+02 0.013 18.6 3.6 6 223-228 6-11 (32)
5 d2hwna1 a.31.1.1 (A:5-43) cAMP 7.8 46 0.0033 22.7 0.3 34 38-77 1-34 (39)
6 d1xl4a2 f.14.1.1 (A:23-138) In 7.4 1.9E+02 0.014 22.2 4.1 24 217-240 23-46 (116)
7 d2ifga1 b.1.1.4 (A:192-283) Hi 7.0 1.9E+02 0.013 20.7 3.7 26 507-532 2-29 (92)
8 d2fcba1 b.1.1.4 (A:6-90) Fc ga 6.6 1.2E+02 0.0089 21.7 2.4 26 507-532 4-31 (85)
9 d1rh5a_ f.41.1.1 (A:) Preprote 6.4 1.3E+02 0.0096 29.0 3.1 53 182-250 290-342 (422)
10 d2ge7a1 d.254.1.2 (A:8-114) Co 5.9 1.9E+02 0.014 23.4 3.3 27 283-310 79-105 (107)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=28.62 E-value=34 Score=23.14 Aligned_cols=29 Identities=14% Similarity=0.129 Sum_probs=21.4
Q ss_pred CcccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q psy17605 203 NSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSG 237 (551)
Q Consensus 203 ~~~~~~~~~~rt~~sW~~I~lFYliFY~~La~lFa 237 (551)
||.+-..+|-||.--|+++++| +||.+|+
T Consensus 4 npn~q~veLNrtsLy~GlLlif------vl~vLFs 32 (37)
T d2axtl1 4 NPNRQPVELNRTSLYLGLLLIL------VLALLFS 32 (37)
T ss_dssp CSSCCCBCCCHHHHHHHHHHHH------HHHHHHH
T ss_pred CCCCCccccchhhHHHHHHHHH------HHHHHHH
Confidence 5667778899999899988776 4455554
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=19.93 E-value=42 Score=21.49 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17605 223 VFYLVFYSVLAAMSGVL 239 (551)
Q Consensus 223 lFYliFY~~La~lFa~~ 239 (551)
+-|+..++||.++|.+.
T Consensus 4 i~yv~ifac~i~lfffa 20 (30)
T d2axtt1 4 ITYVFIFACIIALFFFA 20 (30)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHH
Confidence 34777778888887543
No 3
>d1zx8a1 b.62.1.3 (A:1-124) Hypothetical protein TM1367 {Thermotoga maritima [TaxId: 2336]}
Probab=13.69 E-value=48 Score=27.47 Aligned_cols=35 Identities=23% Similarity=0.487 Sum_probs=22.5
Q ss_pred cCCCcceeeecCCC-CCCcc--ccccC-CCCCCCceEEE
Q psy17605 108 IENLGDIKYYPKQG-FAGYF--FPYEN-SEGYLSPLVAI 142 (551)
Q Consensus 108 ~e~ig~i~YyP~~G-fp~~Y--FPY~n-qpgYlsPLVAV 142 (551)
.-..|+|.|+|..| |-..| +|+.+ .....+|++-+
T Consensus 60 ~~~~GDiaYw~pg~~iaifyg~tp~S~~~irlas~~n~i 98 (124)
T d1zx8a1 60 VVEIGDVGYWPPGKALCLFFGKTPMSDDKIQPASAVNVI 98 (124)
T ss_dssp SBCTTEEEEEGGGTEEEEESSCCTTCSSSBCCSSCEEEE
T ss_pred ccccccEEEECCCCEEEEEECCccCCCCcccccCcceEe
Confidence 35799999999877 55444 46654 33455566544
No 4
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.14 E-value=1.7e+02 Score=18.61 Aligned_cols=6 Identities=83% Similarity=1.741 Sum_probs=2.9
Q ss_pred HHHHHH
Q psy17605 223 VFYLVF 228 (551)
Q Consensus 223 lFYliF 228 (551)
+||++|
T Consensus 6 vfyivf 11 (32)
T d2e74e1 6 VFYIVF 11 (32)
T ss_dssp HHHHHH
T ss_pred eHHHHH
Confidence 455544
No 5
>d2hwna1 a.31.1.1 (A:5-43) cAMP-dependent protein kinase type II regulatory subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.82 E-value=46 Score=22.72 Aligned_cols=34 Identities=26% Similarity=0.590 Sum_probs=24.7
Q ss_pred CCCCCChhHHHHHhhhcccCCCCCCCCcccccchhhhhcc
Q psy17605 38 LPRGMPGQLRNYIENVARTNPKQVKPNADHLHLSSVYLAN 77 (551)
Q Consensus 38 lp~~mP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (551)
+|+++|+-|+++.+.+-++.+ .|-+..+.-|+.+
T Consensus 1 IP~gL~~lL~~ftrevLR~qP------~di~~faa~YF~~ 34 (39)
T d2hwna1 1 IPPGLTELLQGYTVEVLRQQP------PDLVDFAVEYFTR 34 (39)
T ss_dssp CCTTHHHHHHHHHHHHHHHCC------SCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHCC------chHHHHHHHHHHH
Confidence 488899999999998888666 3555566555543
No 6
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=7.41 E-value=1.9e+02 Score=22.24 Aligned_cols=24 Identities=13% Similarity=0.002 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy17605 217 KMCRIGVFYLVFYSVLAAMSGVLM 240 (551)
Q Consensus 217 sW~~I~lFYliFY~~La~lFa~~m 240 (551)
+|.+.++..++.|.++..+|++..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~fa~~y 46 (116)
T d1xl4a2 23 SWPVFITLITGLYLVTNALFALAY 46 (116)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888777776543
No 7
>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.00 E-value=1.9e+02 Score=20.67 Aligned_cols=26 Identities=15% Similarity=0.460 Sum_probs=20.4
Q ss_pred CCeEEEEcCC--CCCCcEEEEEEEeecC
Q psy17605 507 SPLVAINIPR--PRTGILINIKCKAWAK 532 (551)
Q Consensus 507 sPLVAVqf~n--~~~n~~I~IeCkawAk 532 (551)
.|.+-++..+ ...|+.+.++|.+.|.
T Consensus 2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~ 29 (92)
T d2ifga1 2 VPTLKVQVPNASVDVGDDVLLRCQVEGR 29 (92)
T ss_dssp CCEEEEECCSSCCBTTCCEEEEEEEECS
T ss_pred CCEEEEeCCCEEEeCCCEEEEeeeccCC
Confidence 3777777766 4578899999999875
No 8
>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}
Probab=6.65 E-value=1.2e+02 Score=21.66 Aligned_cols=26 Identities=4% Similarity=0.144 Sum_probs=20.3
Q ss_pred CCeEEEEcC--CCCCCcEEEEEEEeecC
Q psy17605 507 SPLVAINIP--RPRTGILINIKCKAWAK 532 (551)
Q Consensus 507 sPLVAVqf~--n~~~n~~I~IeCkawAk 532 (551)
.|.|.++-. ....|+.|.+.|.+++.
T Consensus 4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~ 31 (85)
T d2fcba1 4 KAVLKLEPQWINVLQEDSVTLTCRGTHS 31 (85)
T ss_dssp BCEEEEESCCSEEETTCEEEEEEECSSC
T ss_pred CCEEEECCCCeEEcCCCeEEEEEEEeec
Confidence 467777653 46689999999999885
No 9
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.39 E-value=1.3e+02 Score=28.99 Aligned_cols=53 Identities=17% Similarity=0.372 Sum_probs=31.8
Q ss_pred eccccceeecCCcccccccccCcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy17605 182 QWTSDLEIVGSSPSHIHKLRGNSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPR 250 (551)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rt~~sW~~I~lFYliFY~~La~lFa~~m~v~l~TLd~~ 250 (551)
+|.+.+-.+.+.|..+....++|- -.+.|.++|.+|..+|+.. |+-.+.+||+
T Consensus 290 ~~~~~i~~~~~~~~~~~~~~~~p~---------------~~~~Y~i~~~~l~i~Fs~f-~~~~~~~~p~ 342 (422)
T d1rh5a_ 290 RAVDGIAYYLSTPYGLSSVISDPI---------------HAIVYMIAMIITCVMFGIF-WVETTGLDPK 342 (422)
T ss_dssp SBSSSTTGGGCCCCSSSCCCSCHH---------------HHHHHHHHHHHHHHHHHHH-HHHHHTCSHH
T ss_pred chHHHHHHHhCCcchhhccccCcc---------------chHHHHHHHHHHHHHHHHH-HHHHhCCCHH
Confidence 455555566666665544433321 1457889999999999544 5444445654
No 10
>d2ge7a1 d.254.1.2 (A:8-114) Coronavirus nucleocapsid protein {Avian infectious bronchitis virus [TaxId: 11120]}
Probab=5.91 E-value=1.9e+02 Score=23.43 Aligned_cols=27 Identities=7% Similarity=0.068 Sum_probs=20.6
Q ss_pred EEEEcCCCccHHHHHHHHHHhhHhcCCC
Q psy17605 283 IWYKASDRSNYQYWIDSLIKFLDVYKRP 310 (551)
Q Consensus 283 I~fn~sd~~s~~~yv~~L~~FL~~Y~~~ 310 (551)
|.....|| .|+.|++.|++.|+.|.+.
T Consensus 79 ~~vpk~dP-~~~~~~k~l~~~~d~~~t~ 105 (107)
T d2ge7a1 79 TVVPRDDP-QFDNYVKICDQCVDGVGTR 105 (107)
T ss_dssp EEEETTST-THHHHHHHHHHHBTCTTCC
T ss_pred EEeCCCCC-CHHHHHHHHHHHhhhhccC
Confidence 33444454 5999999999999998764
Done!