RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17605
(551 letters)
>gnl|CDD|162204 TIGR01107, Na_K_ATPase_bet, Sodium Potassium ATPase beta subunit.
This model describes the Na+/K+ ATPase beta subunit in
eukaryotes. Na+/K+ ATPase(also called Sodium-Potassium
pump) is intimately associated with the plasma membrane.
It couples the energy released by the hydrolysis of ATP
to extrude 3 Na+ ions, with the concomitant uptake of
2K+ ions, against their ionic gradients [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 289
Score = 97.0 bits (242), Expect = 3e-22
Identities = 78/348 (22%), Positives = 132/348 (37%), Gaps = 115/348 (33%)
Query: 203 NSEKGQ------KSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLL 256
N E + S F++L +FYLVFY LA + + LQT+ TP++
Sbjct: 22 NPETKEFLGRTGGSWFKIL-------LFYLVFYGCLAGIFIGTIQVMLQTISDFTPKY-- 72
Query: 257 DESLIGTNPGIGFRPIPVESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGR 316
+ + + PG+ RP + + I + SD S+Y+ ++ +L KFL Y +
Sbjct: 73 -QDRVAS-PGLTQRPKVQKLE-----ISFNVSDPSSYEGYVQNLHKFLKPYND---SAQE 122
Query: 317 GQNIYNCDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRL 376
+N+++C G Y + GP
Sbjct: 123 DKNLFDC----GDGAE--------------------YEQRGP------------------ 140
Query: 377 DTRVLRDYDRPPGRGQVCDVDVKLFDPCT--EENHFNYHKSGPCLFLKLNKVYGWIPEYY 434
++ P G + C C+ + F Y + PC+ +K+N++ G+ P+
Sbjct: 141 -------FNAPYGTKKACQFKRDWLGNCSGLNDPTFGYSEGKPCIIIKMNRIIGFKPK-- 191
Query: 435 NDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQG-FA 493
+P V C G+ D EN+G+++YYP G F
Sbjct: 192 --NPGVPP-------------------------VDCTGKRDEDDENIGNVEYYPMNGGFP 224
Query: 494 GYFFPYENSE---GYLSPLVAI---NIPRPRTGILINIKCKAWAKNIK 535
+FPY + YL PLVA+ N+ + I+CK + +NI
Sbjct: 225 LQYFPYYGKKLQPNYLQPLVAVQFTNLTMNTE---VRIECKIYGENIA 269
Score = 42.0 bits (99), Expect = 4e-04
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 98 VSCEGENPADIENLGDIKYYPKQG-FAGYFFPYENSE---GYLSPLVAI---NIPR 146
V C G+ D EN+G+++YYP G F +FPY + YL PLVA+ N+
Sbjct: 198 VDCTGKRDEDDENIGNVEYYPMNGGFPLQYFPYYGKKLQPNYLQPLVAVQFTNLTM 253
>gnl|CDD|215838 pfam00287, Na_K-ATPase, Sodium / potassium ATPase beta chain.
Length = 289
Score = 92.1 bits (229), Expect = 1e-20
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 203 NSEKGQ------KSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLL 256
N E G+ S ++L +FY+VFY LA + + +W LQTLD TP++
Sbjct: 23 NPETGEFLGRTGSSWAKIL-------LFYVVFYGFLAGIFTLTIWVMLQTLDDYTPKY-Q 74
Query: 257 DESLIGTNPGIGFRPIPVESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGR 316
D +PG+ RP I + SD ++Q ++ +L +FL+ Y +
Sbjct: 75 DR---VASPGLMIRPKV----YKGLEISFNVSDPKSWQEYVHTLNEFLEPYN----DSKQ 123
Query: 317 GQNIYNCD----YDRPP-----GRGQVCDVDVKLFDPCT--EENHFNYHKSGPCLFLKLN 365
N NC +D+ P G + C + + C+ + F Y + PC+ +K+N
Sbjct: 124 SGNFENCTPGKYFDQGPFGAPNGEKKACQFNREWLGNCSGLNDPTFGYSEGKPCVLIKMN 183
Query: 366 K 366
+
Sbjct: 184 R 184
Score = 89.4 bits (222), Expect = 9e-20
Identities = 39/174 (22%), Positives = 73/174 (41%), Gaps = 33/174 (18%)
Query: 383 DYDRPPGRGQVCDVDVKLFDPCT--EENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNL 440
+ P G + C + + C+ + F Y + PC+ +K+N++ G+ PE + +
Sbjct: 140 PFGAPNGEKKACQFNREWLGNCSGLNDPTFGYSEGKPCVLIKMNRIIGFKPEPPKNYNS- 198
Query: 441 PRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQG-FAGYFFPY 499
+ C G+ D + +G+I+Y+P G F ++PY
Sbjct: 199 -----------------------TAPPIHCTGKRAEDKDRIGNIEYFPMGGGFDLMYYPY 235
Query: 500 ENSE---GYLSPLVAINIPRPRTGILINIKCKAWAKNIKHLRDGS---GSVHFE 547
+ YL PLVA+ + + ++CK +A+NIK+ G V F+
Sbjct: 236 YGKKLQPNYLQPLVAVKFTNLTRNVEVRVECKIYAENIKNDDPRDRFLGRVEFK 289
Score = 49.3 bits (118), Expect = 2e-06
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 94 NTVWVSCEGENPADIENLGDIKYYPKQG-FAGYFFPYENSE---GYLSPLVAINI 144
+ C G+ D + +G+I+Y+P G F ++PY + YL PLVA+
Sbjct: 199 TAPPIHCTGKRAEDKDRIGNIEYFPMGGGFDLMYYPYYGKKLQPNYLQPLVAVKF 253
>gnl|CDD|137339 PRK09499, sifB, secreted effector protein SifB; Provisional.
Length = 316
Score = 31.9 bits (72), Expect = 0.90
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 323 CDYDRPPGRGQVCDVDVKLFD----PCTEENHFNYHKSGPC----LFLKLNKTLCACLGL 374
CD PP ++ D+ L++ C HF ++K C L +K + + C+ +
Sbjct: 53 CDVASPPDAQRLFDLFCALYELSSPSCRGNFHFQHYKDAECQYTNLCIKDGEDIPLCIMI 112
Query: 375 RLD 377
R D
Sbjct: 113 RQD 115
>gnl|CDD|183405 PRK12287, tqsA, pheromone autoinducer 2 transporter; Reviewed.
Length = 344
Score = 29.7 bits (67), Expect = 4.5
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 194 PSHIHKLRGNSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPR 250
P ++ +G +I + L + YLV + ++ ++G++ WA L LD R
Sbjct: 169 PGKFQQMMARPVEGMAAIQRALDSVSH----YLVLKTAISIITGLVAWAMLAALDVR 221
>gnl|CDD|219921 pfam08592, DUF1772, Domain of unknown function (DUF1772). This
domain is of unknown function.
Length = 137
Score = 28.4 bits (64), Expect = 5.1
Identities = 9/37 (24%), Positives = 12/37 (32%)
Query: 220 RIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLL 256
R F +F A + L L+ R LL
Sbjct: 32 RGPAFMPLFAGTSALLFAYLAVLALRGRGGPGSRLLL 68
>gnl|CDD|149404 pfam08332, CaMKII_AD, Calcium/calmodulin dependent protein kinase
II Association. This domain is found at the C-terminus
of the Calcium/calmodulin dependent protein kinases II
(CaMKII). These proteins also have a Ser/Thr protein
kinase domain (pfam00069) at their N-terminus. The
function of the CaMKII association domain is the
assembly of the single proteins into large (8 to 14
subunits) multimers.
Length = 128
Score = 28.2 bits (63), Expect = 5.9
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 35 TQNLPRGMPGQLRNYIENVARTNPKQVKP--NADHLHLSSVYLANYTSYVTTFKTID 89
NL G+ R Y EN PK V H+HL A +YV + +D
Sbjct: 40 LGNLVEGLE-FHRFYFENFLTKRPKAVHTTILNPHVHLLGDDAA-CIAYVRLTQYMD 94
>gnl|CDD|206165 pfam13995, YebF, YebF-like protein. The YebF-like protein family
appears to be a group of colicin immunity proteins. As
well as YebF the family includes cmi, the colicin M
immunity protein. This domain family is found in
bacteria, and is approximately 80 amino acids in length.
The alignment contains two conserved cysteine residues
that form a disulphide bond in the solved structure.
Length = 89
Score = 27.3 bits (61), Expect = 6.2
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 243 FLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVGSSLIW 284
FLQ R PRW D+ L+GT + + + V G ++
Sbjct: 24 FLQ---NRIPRWDDDKKLLGTAKPVAW--VNVNDITGKDDVY 60
>gnl|CDD|215298 PLN02542, PLN02542, fructose-1,6-bisphosphatase.
Length = 412
Score = 28.7 bits (64), Expect = 8.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 292 NYQYWIDSLIKFLDVYKRPG 311
NYQ W D L K++D K PG
Sbjct: 295 NYQLWDDKLKKYIDDLKDPG 314
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 28.9 bits (65), Expect = 9.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 300 LIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQVC 335
L+ F ++ PG TP +++ + +Y+ PG Q+C
Sbjct: 192 LVYFPNLDPYPGYTPIGSESVDDYEYEELPGGEQIC 227
>gnl|CDD|188521 TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase
WcaK. This gene is the pyruvyl transferase involved in
the biosynthesis of colanic acid, an exopolysaccharide
expressed in Enterobacteraceae species.
Length = 426
Score = 28.7 bits (64), Expect = 10.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 502 SEGYLSPLVAINIPRPRTGILINIKCKAWAKNIKHLRDGS 541
S + +P +AIN GI+ + A +I+HL DGS
Sbjct: 342 SMNFGTPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGS 381
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.141 0.454
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,065,240
Number of extensions: 2829865
Number of successful extensions: 2132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2119
Number of HSP's successfully gapped: 20
Length of query: 551
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 449
Effective length of database: 6,413,494
Effective search space: 2879658806
Effective search space used: 2879658806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.3 bits)