RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17605
(551 letters)
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_B* 3b8e_B*
Length = 305
Score = 224 bits (571), Expect = 4e-69
Identities = 68/357 (19%), Positives = 133/357 (37%), Gaps = 81/357 (22%)
Query: 203 NSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIG 262
+SEK + + + +I +FYL+FY LA + + L TL P++ +
Sbjct: 19 DSEKKE-FLGRTGSSWFKIFLFYLIFYGCLAGIFIGTIQVLLLTLSDFEPKYQDRVA--- 74
Query: 263 TNPGIGFRPIPVESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYN 322
PG+ P ++++ I + S+ +Y+ ++ S+ K +D+Y +
Sbjct: 75 -PPGLSHAPYAIKTE-----ISFSISNPKSYESFVKSMHKLMDLYNESSQAGNSPFE--D 126
Query: 323 CDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLR 382
C T ++
Sbjct: 127 CS--------------------DTPADYIKRG---------------------------- 138
Query: 383 DYDRPPGRGQVCDVDVKLFDPCT--EENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNL 440
D D G+ + C C+ ++ + Y + PC+ KLN++ G+ P+ +T +L
Sbjct: 139 DLDDSQGQKKACRFSRMWLKNCSGLDDTTYGYAEGKPCVVAKLNRIIGFYPKPLKNTTDL 198
Query: 441 PRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAG---YFF 497
P + Y+ + + C + D E +G I+Y+ G+AG ++
Sbjct: 199 PEELQANYNQYV-------------LPLRCAAKREEDREKIGSIEYFGLGGYAGFPLQYY 245
Query: 498 PYENS---EGYLSPLVAINIPRPRTGILINIKCKAWAKNIKHLRDGSGSVHFEIMVD 551
PY + YL PL+AI + + I+CK + +NI + FE+ ++
Sbjct: 246 PYYGKRLQKKYLQPLLAIQFTNLTQNMELRIECKVYGENIDYSEKDRFRGRFEVKIE 302
Score = 72.8 bits (178), Expect = 3e-14
Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 51/140 (36%)
Query: 18 FLIVSQVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQVKPNADHLHLSSVYLAN 77
++++ G+ P+ +T +LP + Y+
Sbjct: 178 VAKLNRIIGFYPKPLKNTTDLPEELQANYNQYV--------------------------- 210
Query: 78 YTSYVTTFKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQGFAG---YFFPYENS-- 132
+ + C + D E +G I+Y+ G+AG ++PY
Sbjct: 211 ------------------LPLRCAAKREEDREKIGSIEYFGLGGYAGFPLQYYPYYGKRL 252
Query: 133 -EGYLSPLVAINIPRPRTGI 151
+ YL PL+AI +
Sbjct: 253 QKKYLQPLLAIQFTNLTQNM 272
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical,
heterotrimeric membrane protein complex, ATP- hydrolase,
ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa}
PDB: 3n2f_B* 3n23_B*
Length = 286
Score = 217 bits (554), Expect = 6e-67
Identities = 64/343 (18%), Positives = 124/343 (36%), Gaps = 83/343 (24%)
Query: 219 CRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDV 278
+I +FY++FY LA + + L T+ P + + PG+ P +++
Sbjct: 16 FKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDRVA----PPGLTQIPQSQKTE- 70
Query: 279 GSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQVCDVD 338
I ++ +D +Y+ ++ S+++FL+ YK + ++ D P +
Sbjct: 71 ----ISFRPNDPQSYESYVVSIVRFLEKYK----DLAQKDDMIFEDCGNVPSELKERG-- 120
Query: 339 VKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDV 398
+Y+ G +VC +
Sbjct: 121 --------------------------------------------EYNNERGERKVCRSRL 136
Query: 399 KLFDPCT--EENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIENVA 456
+ C+ + + Y PC+ +KLN+V G+ P+ +
Sbjct: 137 EWLGNCSGLNDETYGYKDGKPCVIIKLNRVLGFKPKPPKNESLET--------------Y 182
Query: 457 RTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGY---FFPYENS---EGYLSPLV 510
+ V C G+ D E +G ++Y+ G+ G+ ++PY YL PL+
Sbjct: 183 PVMKYNPYVLPVHCTGKRDEDKEKVGTMEYFGLGGYPGFPLQYYPYYGKLLQPKYLQPLM 242
Query: 511 AINIPRPRTGILINIKCKAWAKNIKH-LRD-GSGSVHFEIMVD 551
A+ I I+CKA+ +NI + +D G +I V
Sbjct: 243 AVQFTNLTMDTEIRIECKAYGENIGYSEKDRFQGRFDVKIEVK 285
Score = 71.7 bits (175), Expect = 5e-14
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 94 NTVWVSCEGENPADIENLGDIKYYPKQGFAGY---FFPYENS---EGYLSPLVAINIPRP 147
+ V C G+ D E +G ++Y+ G+ G+ ++PY YL PL+A+
Sbjct: 190 YVLPVHCTGKRDEDKEKVGTMEYFGLGGYPGFPLQYYPYYGKLLQPKYLQPLMAVQFTNL 249
Query: 148 RTGI 151
Sbjct: 250 TMDT 253
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+,
K+-ATPase, P-type ATPase, membrane protein, hydrolase,
aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB:
2xzb_B
Length = 290
Score = 216 bits (550), Expect = 3e-66
Identities = 51/344 (14%), Positives = 102/344 (29%), Gaps = 103/344 (29%)
Query: 219 CRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDV 278
I ++Y+ FY V++ + + ++ ++T+DP TP + +PG+ RP
Sbjct: 38 VWISLYYVAFYVVMSGIFALCIYVLMRTIDPYTPDYQDQLK----SPGVTLRPDVYGEK- 92
Query: 279 GSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPG----LTPGRGQNIYNCDYDRPPGRGQV 334
I Y SD + + +L +FL Y + + + + P
Sbjct: 93 -GLDISYNVSDSTTWAGLAHTLHRFLAGYSPAAQEGSINCTSEKYFFQESFLAPNHTKFS 151
Query: 335 CDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVC 394
C + C
Sbjct: 152 CKFTADML--------------QNC----------------------------------- 162
Query: 395 DVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIEN 454
+ F + + PC +K+N++ ++P
Sbjct: 163 --------SGRPDPTFGFAEGKPCFIIKMNRIVKFLPGNST------------------- 195
Query: 455 VARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQG-FAGYFFPYENSE---GYLSPLV 510
V C + ++Y+P G ++ ++FPY + Y +PLV
Sbjct: 196 ----------APRVDCAFLDQPRDGPPLQVEYFPANGTYSLHYFPYYGKKAQPHYSNPLV 245
Query: 511 AINIPRPRTGILINIKCKAWAKNIKH---LRDGSGSVHFEIMVD 551
A + + I CK A+++ G V F++ +
Sbjct: 246 AAKLLNVPRNRDVVIVCKILAEHVSFDNPHDPYEGKVEFKLKIQ 289
Score = 72.0 bits (176), Expect = 5e-14
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 94 NTVWVSCEGENPADIENLGDIKYYPKQG-FAGYFFPYENSE---GYLSPLVAINIPRPRT 149
V C + ++Y+P G ++ ++FPY + Y +PLVA +
Sbjct: 195 TAPRVDCAFLDQPRDGPPLQVEYFPANGTYSLHYFPYYGKKAQPHYSNPLVAAKLLNVPR 254
Query: 150 GI 151
Sbjct: 255 NR 256
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 2e-08
Identities = 61/386 (15%), Positives = 118/386 (30%), Gaps = 135/386 (34%)
Query: 13 FLTHYFLIVSQVYGWI--PEYYNDTQNL---PRGMPG----QLRNYIENVART---NPKQ 60
T + W+ P D L P P QL +Y+ A+ P +
Sbjct: 208 VFTQGL----NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV-VTAKLLGFTPGE 262
Query: 61 VKPNADHL-----HLSSVYLANYTSYVTT---FKTIDSRRLNTV-WVSCEGENPADIENL 111
++ +L H + A + + F + + + ++
Sbjct: 263 LR---SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY-------- 311
Query: 112 GDIKYYPKQGFAGYFFP------YENSEGYLSPLVAINIPRPRTGISLELIRFPELFMYA 165
+ YP P EN+EG SP+++I + ++ E + + ++
Sbjct: 312 ---EAYPNTSLP----PSILEDSLENNEGVPSPMLSI------SNLTQEQV---QDYVNK 355
Query: 166 VRISVARYTSLQLELTQWTSDLEIVGSSPS-------HIHKLRGNSEKGQKSI-F-QVLR 216
+ +++ L + +V P + K + S Q I F + R
Sbjct: 356 TNSHLPAGKQVEISLVN-GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE--R 412
Query: 217 KMCRIGVFYLV----FYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRP- 271
K+ + +L F+S L L P + L+++ L+ N + F
Sbjct: 413 KL-KFSNRFLPVASPFHSHL--------------LVPASD--LINKDLVKNN--VSFNAK 453
Query: 272 ---IPV------------ESDVGSSLI---------WYKASDRSNYQYWIDSLIKFLDVY 307
IPV + ++ W + + + + +D F
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW-ETTTQFKATHILD----F---- 504
Query: 308 KRPGLTPGRGQNIY-NCDYDRPPGRG 332
PG G G + N D G G
Sbjct: 505 -GPGGASGLGVLTHRNKD-----GTG 524
Score = 50.8 bits (121), Expect = 1e-06
Identities = 55/308 (17%), Positives = 84/308 (27%), Gaps = 117/308 (37%)
Query: 96 VWVSCEGENPAD---IENLG----DI-KYYPKQGFAGYFFPYEN---SEGYLSPLVAINI 144
VW N AD + G DI P +F + E Y + +
Sbjct: 1645 VW------NRADNHFKDTYGFSILDIVINNPVN-LTIHFGGEKGKRIRENYSAMIFETI- 1696
Query: 145 PRPRTGISLELIRFPELFMYAVRISVARYT----SLQLELTQWTSDLEIVGSSPSHIHKL 200
+ E I F E+ YT L TQ+T
Sbjct: 1697 --VDGKLKTEKI-FKEI-----NEHSTSYTFRSEKGLLSATQFT---------------- 1732
Query: 201 RGNSEKGQ-------KSIFQVLRKMCRIGVFYL--VF-------YSVLAAMSGVLMWA-- 242
Q K+ F+ L+ G+ F Y+ LA+++ V+
Sbjct: 1733 -------QPALTLMEKAAFEDLKSK---GLIPADATFAGHSLGEYAALASLADVMSIESL 1782
Query: 243 ---------FLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVGSSLIWYKASDRS-- 291
+Q PR + +I NPG R S + + R+
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG---RVAASFSQEALQYVVERVGKRTGW 1839
Query: 292 -----NY-----QYWI-------DSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQV 334
NY QY D++ L+ K Q I D +
Sbjct: 1840 LVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKL--------QKI---DIIELQKSLSL 1888
Query: 335 CDVDVKLF 342
+V+ LF
Sbjct: 1889 EEVEGHLF 1896
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 3e-07
Identities = 79/568 (13%), Positives = 146/568 (25%), Gaps = 198/568 (34%)
Query: 3 RFFKDFFCYNFLTHYFLIVSQVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQVK 62
+F ++ N Y ++ Q P M + + N K
Sbjct: 81 KFVEEVLRIN------------YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 63 PNADHLHL-----SSVYLANYTSYVTTF------KT-----------IDSRRLNTV-WVS 99
N L ++ V KT + + + W++
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 100 ---CEGENPADIENLGDIKYYPKQGF-------AGYFFPYENSEGYLSPLVAINIPRPRT 149
C +E L + Y + + + + L L+ P
Sbjct: 189 LKNCNSPE-TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENC 246
Query: 150 GISLELIRFPEL---FMYAVRISVARYTSLQLELTQWTSDLEIVGSS-PSHI---HKLRG 202
+ L ++ + F + +I L T++ + + ++ +HI H
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKI---------LLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 203 NSEKGQKSIF-QVL--------RKMCRIGVFYLVFYSVLAAM--SGVLMW---------- 241
+ KS+ + L R++ L S++A G+ W
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL---SIIAESIRDGLATWDNWKHVNCDK 354
Query: 242 ------AFLQTLDPRTPRWLLDESLIGTNPGIGFR---PIP------------------- 273
+ L L+P R + D + F IP
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSV-------FPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 274 VESDVGSSLIWYKASDRSNYQYWIDSLI---------------KFLDVYKRPGLTPGRGQ 318
V SL+ I S+ +D Y P +
Sbjct: 408 VNKLHKYSLV---EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP-----KT- 458
Query: 319 NIYNCDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSG----------PCLFL------ 362
++ D PP +D + +H +H +FL
Sbjct: 459 --FDSDDLIPP------YLDQYFY------SHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 363 -KLNK--TLCACLGLRLDT-RVLRDYDRPPGRGQVCD---------VDVKLFDPCTEENH 409
K+ T G L+T + L+ Y + +CD + F P EEN
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFY-----KPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 410 FNYHKSGPCLFLKLNKVYGWIPEYYNDT 437
K L + L + +
Sbjct: 560 IC-SKYTDLLRIALMAEDE---AIFEEA 583
Score = 37.1 bits (85), Expect = 0.015
Identities = 72/512 (14%), Positives = 130/512 (25%), Gaps = 200/512 (39%)
Query: 85 FKTIDSRRLNTVWVSCEGENPADIENLGD-IKYYPKQGFAGYFFPYENSEGYLS------ 137
F T+ S++ V E + + L IK +Q P + Y+
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-------PSMMTRMYIEQRDRLY 120
Query: 138 ----PLVAINIPRPRTGISLELIRFPELFMYAVRISVARYTSLQLELTQWTSDLEIVGSS 193
N+ R + Y L+ L + ++
Sbjct: 121 NDNQVFAKYNVSRLQP-----------------------YLKLRQALLELRPAKNVL--- 154
Query: 194 PSHIHKLRGNSEKGQKSI--------FQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQ 245
I + G+ G K+ ++V KM +F+L + + + + M LQ
Sbjct: 155 ---IDGVLGS---G-KTWVALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEM---LQ 203
Query: 246 TLDPRTPRWLLDESLIGTNPGIGFRPIPVES----------------------DVGSSLI 283
L + S +N + + S +V ++
Sbjct: 204 KLLYQIDPNWTSRSDHSSNI-----KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 284 WYKA-----------SDRSNYQYWIDSLI-----KFLDVYKRPGLTPGRGQNIY----NC 323
W A + D L + LTP +++ +C
Sbjct: 259 W-NAFNLSCKILLTTRFKQV----TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 324 DYDR-PPGRGQVCDVD---VKLF------DPCTEEN--HFNYHKSGPCLFLKLNKTLCAC 371
P +V + + + T +N H N K L + +
Sbjct: 314 RPQDLPR---EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK--------LTTIIESS 362
Query: 372 LGLRLDTRVLRD-YDR----PPGRGQVCDVDVKL-------FDPCTEE-----NHFNYHK 414
L + L+ R +DR PP + FD + N HK
Sbjct: 363 LNV-LEPAEYRKMFDRLSVFPP------SAHIPTILLSLIWFDVIKSDVMVVVNKL--HK 413
Query: 415 SGPCLFLKLNK--VYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEG 472
L K K IP Y + + L I
Sbjct: 414 Y--SLVEKQPKESTIS-IPSIYLELKVKLENEY-ALHRSI-------------------- 449
Query: 473 ENPADIENLGDIKYYPKQGFA-----GYFFPY 499
+++ K + YF+ +
Sbjct: 450 -----VDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Score = 29.1 bits (64), Expect = 5.0
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 10/90 (11%)
Query: 376 LDTRVLRDYDRPPGRGQVCDVDVKLFDPCTEENHF-----NYHKSGPCLFLK--LNKVYG 428
D + ++D + + D + D + + + F++ L Y
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 429 WIPEYYNDTQNLPRGMPGQLRNYIENVART 458
++ + R R YIE R
Sbjct: 93 FLMSPI---KTEQRQPSMMTRMYIEQRDRL 119
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane,
transmembra membrane protein, signaling protein; 1.99A
{Mus musculus} PDB: 3ryt_A*
Length = 627
Score = 32.0 bits (72), Expect = 0.57
Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 10/111 (9%)
Query: 371 CLGLRLDTRVLR------DYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPC---LFL 421
CL LR V++ D + V + F + K P L+
Sbjct: 475 CLPLRFWVNVIKNPQFVFDIHKNSITDACLSVVAQTFMDSCSTSEHRLGKDSPSNKLLYA 534
Query: 422 KLNKVY-GWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCE 471
K Y W+ YY D + + Y+ +R + N + E
Sbjct: 535 KDIPNYKSWVERYYRDIAKMASISDQDMDAYLVEQSRLHANDFNVLSALSE 585
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A
{Halothermothrix orenii}
Length = 327
Score = 31.0 bits (71), Expect = 0.84
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 64 NADHLHLSSVYLANYTSYVTTFKTIDSRRLNTVWVS 99
+ HLS+ L+ + T K + R V
Sbjct: 144 RSKVFHLSTFILSRKPARDTAIKAFNYAREQGKIVC 179
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}
Length = 332
Score = 31.0 bits (71), Expect = 0.91
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 64 NADHLHLSSVYLANYTSYVTTFKTIDSRRLNTVWVS 99
+ L +S L+ S K I + N V V
Sbjct: 138 RSKLLLVSGTALSKSPSREAVLKAIRLAKRNDVKVV 173
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase;
2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB:
1tz3_A* 1tz6_A*
Length = 339
Score = 29.9 bits (68), Expect = 2.0
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 49 YIENVA--RTNPKQVKP--NADHLHLSSVYLANYTSYVTTFKTIDSRRLNTVWVS 99
+ A +P+ + P + + SS+ L + + + R +V
Sbjct: 122 LVHPGADTYVSPQDLPPFRQYEWFYFSSIGLTDRPAREACLEGARRMREAGGYVL 176
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose
metabolic process, PFKB family,11206G, PSI-II, NYSGXRC,
structural genomics; HET: ATP; 1.79A {Escherichia coli
O6} PDB: 3k9e_A
Length = 330
Score = 29.1 bits (66), Expect = 3.4
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 49 YIENVA--RTNPKQVKP----NADHLHLSSVYLANYTSYVTTFKTIDSRRLNTVWVS 99
I+N A + + + V + H H+ L ++ K + + N +S
Sbjct: 109 NIKNAACGKLSAQHVDENILKDCTHFHIMGSSLFSFHMVDAVKKAVTIVKANGGVIS 165
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane,
transmembrane receptor, cell membrane, glycoprotein,
phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D*
3su8_X*
Length = 644
Score = 29.0 bits (64), Expect = 4.5
Identities = 4/39 (10%), Positives = 12/39 (30%)
Query: 429 WIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVW 467
+ YY D + ++ + + ++ L
Sbjct: 557 MVERYYADIRQTVPASDQEMNSVLAELSWNYSGDLGARV 595
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario
centre for structu proteomics, OCSP, unknown function;
NMR {Archaeoglobus fulgidus}
Length = 153
Score = 28.2 bits (62), Expect = 4.6
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 103 ENPADIENLGDIKYYPKQG-FAGYFFPYENSEGYLSPLVAINI 144
EN D+ LGD+ Y+ +F S+ + P A+N+
Sbjct: 86 ENSKDVVELGDVAYWIPGKAICLFFGKTPISDDKIRPASAVNV 128
Score = 28.2 bits (62), Expect = 4.6
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 473 ENPADIENLGDIKYYPKQG-FAGYFFPYENSEGYLSPLVAINI 514
EN D+ LGD+ Y+ +F S+ + P A+N+
Sbjct: 86 ENSKDVVELGDVAYWIPGKAICLFFGKTPISDDKIRPASAVNV 128
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB
family, PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 1.90A {Pyrococcus horikoshii} PDB:
3ih0_A* 3gbu_A*
Length = 313
Score = 28.3 bits (64), Expect = 7.3
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 64 NADHLHLSSVYLANYTSYVTTFKTIDSRRLNTV 96
A ++ SV LA S T K I + +++
Sbjct: 124 EAKIVNFGSVILARNPSRETVMKVIKKIKGSSL 156
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: b.26.1.2
Length = 120
Score = 26.8 bits (59), Expect = 8.2
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 330 GRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACL--GLRLDTRV-LRDYDR 386
G + D ++LF P + +H + + + G R+ L+ R
Sbjct: 41 GTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDAETYVDGQRISETTMLQSGMR 100
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 27.4 bits (61), Expect = 8.3
Identities = 19/121 (15%), Positives = 28/121 (23%), Gaps = 43/121 (35%)
Query: 313 TPGRGQNIYNCDYDRPPG-RGQVCDVDVKLFDPCTEENHFNYHKSGPCL----------- 360
PG ++C+ P G C V++ E PC
Sbjct: 15 LPGLADGSFSCEC--PDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAY 72
Query: 361 -FLKLNKTLCACLGLRLDTRVLRDYDRPPG-RGQVCDVDVKLFDPCTEENHFNYHKSGPC 418
+C C P G G C ++ + C PC
Sbjct: 73 RGDTFIGYVCKC---------------PRGFNGIHCQHNI---NECE---------VEPC 105
Query: 419 L 419
Sbjct: 106 K 106
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics,
protein structure initiative; 1.97A {Xylella fastidiosa
TEMECULA1} PDB: 3lki_A*
Length = 338
Score = 28.0 bits (63), Expect = 9.2
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 64 NADHLHLSSVYLANYTSYVTTFKTIDSRRLNTVWVS 99
+A H S + + TF+ + + VS
Sbjct: 129 DALIFHACSNSMTDADIAEVTFEGMRRAQAAGAIVS 164
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.141 0.454
Gapped
Lambda K H
0.267 0.0481 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,891,104
Number of extensions: 542148
Number of successful extensions: 912
Number of sequences better than 10.0: 1
Number of HSP's gapped: 873
Number of HSP's successfully gapped: 31
Length of query: 551
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 453
Effective length of database: 3,965,535
Effective search space: 1796387355
Effective search space used: 1796387355
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.5 bits)