RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17605
         (551 letters)



>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas
           mobilis [TaxId: 542]}
          Length = 175

 Score = 29.8 bits (66), Expect = 0.58
 Identities = 14/169 (8%), Positives = 36/169 (21%), Gaps = 12/169 (7%)

Query: 286 KASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPG--RGQVCDVDVKLFD 343
           +ASD ++    +D  +KF+    +  +  G        +                +    
Sbjct: 1   EASDEASLNAAVDETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFTDALGGAVATMAAAK 60

Query: 344 PCTEENHFNYHKSGPCL-------FLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDV 396
               E +  Y  +                      L    +      +   P   ++   
Sbjct: 61  SFFPEENALYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLA 120

Query: 397 DVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMP 445
           +                        +L +         +  ++L  G  
Sbjct: 121 EP---RSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGSLDFFKSLNAGEL 166


>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal
           domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 61

 Score = 27.3 bits (61), Expect = 0.81
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 188 EIVGSSPSHIHKLRGNSEKGQKSIFQVLRKMCRIG 222
            I  +SP  + ++ G SE     I Q  RK   +G
Sbjct: 27  AIAVASPIELKEVAGISEGTALKIIQAARKAANLG 61


>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal
           domain {Archaeon Methanococcus voltae [TaxId: 2188]}
          Length = 60

 Score = 26.6 bits (59), Expect = 1.5
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 188 EIVGSSPSHIHKLRGNSEKGQKSIFQVLRKMCRIG 222
           +I  ++   +  + G SEK    +    R +C +G
Sbjct: 25  KIATATVGELTDIEGISEKAAAKMIMGARDLCDLG 59


>d1g12a_ d.92.1.12 (A:) Fungal zinc peptidase {Grifola frondosa
           [TaxId: 5627]}
          Length = 167

 Score = 26.8 bits (59), Expect = 5.0
 Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 14/75 (18%)

Query: 74  YLANYTS----YVTTFKTIDSRRLNTV--WVSCEGENPADIENLGDIKYY---PKQGFAG 124
           YL  +T+    Y T F +  S R +TV            +  +     +       G   
Sbjct: 30  YLQTHTAATPRYTTWFGSYISSRHSTVLQHY-----TDMNSNDFSSYSFDCTCTAAGTFA 84

Query: 125 YFFPYENSEGYLSPL 139
           Y +P      YL   
Sbjct: 85  YVYPNRFGTVYLCGA 99


>d2d6fa2 c.88.1.1 (A:84-435) Glutamyl-tRNA(Gln) amidotransferase
           subunit D, GatD {Methanobacterium thermoautotrophicum
           [TaxId: 145262]}
          Length = 352

 Score = 27.0 bits (59), Expect = 6.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 239 LMWAFLQTLDPRTPRWLLDESLIG 262
           + W   QT DP   R ++ E++ G
Sbjct: 316 MCWVLGQTDDPEMAREMMRENIAG 339


>d1zx8a1 b.62.1.3 (A:1-124) Hypothetical protein TM1367 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 124

 Score = 25.6 bits (56), Expect = 9.1
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 103 ENPADIENLGDIKYYPKQG-FAGYFFPYENSEGYLSPLVAINI 144
           ENP ++  +GD+ Y+P       +F     S+  + P  A+N+
Sbjct: 55  ENPREVVEIGDVGYWPPGKALCLFFGKTPMSDDKIQPASAVNV 97



 Score = 25.6 bits (56), Expect = 9.1
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 473 ENPADIENLGDIKYYPKQG-FAGYFFPYENSEGYLSPLVAINI 514
           ENP ++  +GD+ Y+P       +F     S+  + P  A+N+
Sbjct: 55  ENPREVVEIGDVGYWPPGKALCLFFGKTPMSDDKIQPASAVNV 97


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.141    0.454 

Gapped
Lambda     K      H
   0.267   0.0673    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,244,285
Number of extensions: 110622
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 12
Length of query: 551
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 461
Effective length of database: 1,171,896
Effective search space: 540244056
Effective search space used: 540244056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)