BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17610
(515 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 93/434 (21%), Positives = 178/434 (41%), Gaps = 34/434 (7%)
Query: 77 LLKDDSGISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNF 136
L S + + ++P + + + + L + N TL T H+S+++ + F +
Sbjct: 94 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVWGVAFSPDG 151
Query: 137 SSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQ 196
++ + +++W+ R L ++ + + F+ DG+ I S +D ++ +
Sbjct: 152 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 210
Query: 197 SGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSV 256
L+ + H+ V +A + DG + S + V++W R Q LQ L H+SSV
Sbjct: 211 GQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQT-LTGHSSSV 265
Query: 257 SVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXXXXXAAYHPSEVQLITCSTNK 316
+ + + D + SAS D T LW+ A+ P + + S +K
Sbjct: 266 NGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 325
Query: 317 MIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGI 376
+ W +G +++L G ++V V F DG+ + D+ VK+W R G
Sbjct: 326 TVKLWN-RNGQHLQTLTGHS-SSVWGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLT 382
Query: 377 GHAASITKIKISPDKKVIVSVSADGGIFLWTFPELEDDVGDXXXXXXXXXXXXXXXXXXX 436
GH++S+ + SPD + I S S D + LW
Sbjct: 383 GHSSSVRGVAFSPDGQTIASASDDKTVKLWN---------------------RNGQLLQT 421
Query: 437 XXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDG 496
A+ P + + + S +K + W +G ++++L G ++V V F DG
Sbjct: 422 LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHS-SSVRGVAFSPDG 479
Query: 497 KYFLTGGADQIVKI 510
+ + D+ VK+
Sbjct: 480 QTIASASDDKTVKL 493
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 145/330 (43%), Gaps = 11/330 (3%)
Query: 77 LLKDDSGISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNF 136
L S ++ + + P + + + + L + N TL T H+S+++ + F +
Sbjct: 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVWGVAFSPDG 315
Query: 137 SSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQ 196
++ + +++W+ R L ++ + + F+ DG+ I S +D ++ +
Sbjct: 316 QTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 374
Query: 197 SGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSV 256
L+ + H+ V +A + DG + S + V++W R Q LQ L H+SSV
Sbjct: 375 GQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQT-LTGHSSSV 429
Query: 257 SVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXXXXXAAYHPSEVQLITCSTNK 316
+ D + SAS D T LW+ A+ P + + S +K
Sbjct: 430 WGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 489
Query: 317 MIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGI 376
+ W +G ++++L G ++V V F DG+ + D+ VK+W R G
Sbjct: 490 TVKLWN-RNGQLLQTLTGHS-SSVRGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLT 546
Query: 377 GHAASITKIKISPDKKVIVSVSADGGIFLW 406
GH++S+ + SPD + I S S+D + LW
Sbjct: 547 GHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/355 (22%), Positives = 142/355 (40%), Gaps = 31/355 (8%)
Query: 156 LNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTAL 215
+ E R+ + + F+ DG+ I S +D ++ + L+ + H+ V +
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--GHSSSVWGV 63
Query: 216 AITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDG 275
A + DG + S + V++W R Q LQ L H+SSV + D + SAS D
Sbjct: 64 AFSPDGQTIASASDDKTVKLWN--RNGQLLQT-LTGHSSSVRGVAFSPDGQTIASASDDK 120
Query: 276 TCVLWDLIKSTRXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGS 335
T LW+ A+ P + + S +K + W +G ++++L G
Sbjct: 121 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH 179
Query: 336 DVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIV 395
++V V F DG+ + D+ VK+W R G GH++S+ + SPD + I
Sbjct: 180 S-SSVWGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVRGVAFSPDGQTIA 237
Query: 396 SVSADGGIFLWTFPELEDDVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYHPSEVQ 455
S S D + LW A+ P
Sbjct: 238 SASDDKTVKLWN---------------------RNGQLLQTLTGHSSSVNGVAFRPDGQT 276
Query: 456 LITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKI 510
+ + S +K + W +G ++++L G ++V V F DG+ + D+ VK+
Sbjct: 277 IASASDDKTVKLWN-RNGQLLQTLTGHS-SSVWGVAFSPDGQTIASASDDKTVKL 329
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 92/205 (44%), Gaps = 8/205 (3%)
Query: 77 LLKDDSGISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNF 136
L S + + ++P + + + + L + N TL T H+S+++ + F +
Sbjct: 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVWGVAFSPDD 438
Query: 137 SSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQ 196
++ + +++W+ R L ++ + + F+ DG+ I S +D ++ +
Sbjct: 439 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 497
Query: 197 SGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSV 256
L+ + H+ V +A + DG + S + V++W R Q LQ L H+SSV
Sbjct: 498 GQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQT-LTGHSSSV 552
Query: 257 SVIQIKSDSKEAMSASTDGTCVLWD 281
+ D + SAS+D T LW+
Sbjct: 553 WGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 92/211 (43%), Gaps = 7/211 (3%)
Query: 207 AHNRGVTALAIT-QDGTRLLSGGGEGQVRIWKLTRESQSL---QCVLKEHTSSVSVIQIK 262
HN VT +A T Q +LS + + +WKLTR+ + Q L+ H+ VS + I
Sbjct: 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS 95
Query: 263 SDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXXXXXA-AYHPSEVQLITCSTNKMIDYW 321
SD + A+S S DGT LWDL T + A+ Q+++ S +K I W
Sbjct: 96 SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 155
Query: 322 ETCDGSIIRSLEGSDVAAVNCVDFVDD--GKYFLTGGADQIVKMWMYREGVPCFVGIGHA 379
T + S V+CV F + ++ G D++VK+W IGH
Sbjct: 156 NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT 215
Query: 380 ASITKIKISPDKKVIVSVSADGGIFLWTFPE 410
+ + +SPD + S DG LW E
Sbjct: 216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 11/197 (5%)
Query: 181 ILSGWNDGFIRCFTPQSGKLKFIIPN----AHNRGVTALAITQDGTRLLSGGGEGQVRIW 236
ILS D I + + + IP H+ V+ + I+ DG LSG +G +R+W
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113
Query: 237 KLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXX 296
LT + + + V HT V + SD+++ +S S D T LW+ + +
Sbjct: 114 DLTTGTTTRRFV--GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS 171
Query: 297 XXXA--AYHP--SEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYF 352
+ + P S +++C +K++ W + + + G +N V DG
Sbjct: 172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH-TGYLNTVTVSPDGSLC 230
Query: 353 LTGGADQIVKMWMYREG 369
+GG D +W EG
Sbjct: 231 ASGGKDGQAMLWDLNEG 247
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/233 (20%), Positives = 88/233 (37%), Gaps = 23/233 (9%)
Query: 148 IRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPN- 206
+R+W + T R + F+ D + I+SG D I+ + G K+ + +
Sbjct: 110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQDE 168
Query: 207 AHNRGVTALAITQDGTR--LLSGGGEGQVRIWKLTRESQSLQCVLKE----HTSSVSVIQ 260
+H+ V+ + + + + ++S G + V++W L C LK HT ++ +
Sbjct: 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA------NCKLKTNHIGHTGYLNTVT 222
Query: 261 IKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDY 320
+ D S DG +LWDL + + P+ L +T I
Sbjct: 223 VSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC-AATGPSIKI 281
Query: 321 WETCDGSIIRSLE------GSDVAAVNCVDFV--DDGKYFLTGGADQIVKMWM 365
W+ I+ L+ S C DG+ G D +V++W
Sbjct: 282 WDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 92/211 (43%), Gaps = 7/211 (3%)
Query: 207 AHNRGVTALAIT-QDGTRLLSGGGEGQVRIWKLTRESQSL---QCVLKEHTSSVSVIQIK 262
HN VT +A T Q +LS + + +WKLTR+ + Q L+ H+ VS + I
Sbjct: 13 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS 72
Query: 263 SDSKEAMSASTDGTCVLWDLIK-STRXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYW 321
SD + A+S S DGT LWDL +T A+ Q+++ S +K I W
Sbjct: 73 SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 132
Query: 322 ETCDGSIIRSLEGSDVAAVNCVDFVDD--GKYFLTGGADQIVKMWMYREGVPCFVGIGHA 379
T + S V+CV F + ++ G D++VK+W IGH
Sbjct: 133 NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT 192
Query: 380 ASITKIKISPDKKVIVSVSADGGIFLWTFPE 410
+ + +SPD + S DG LW E
Sbjct: 193 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 223
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 11/197 (5%)
Query: 181 ILSGWNDGFIRCFTPQSGKLKFIIPN----AHNRGVTALAITQDGTRLLSGGGEGQVRIW 236
ILS D I + + + IP H+ V+ + I+ DG LSG +G +R+W
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 90
Query: 237 KLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXX 296
LT + + + V HT V + SD+++ +S S D T LW+ + +
Sbjct: 91 DLTTGTTTRRFV--GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS 148
Query: 297 XXXA--AYHP--SEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYF 352
+ + P S +++C +K++ W + + + G +N V DG
Sbjct: 149 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH-TGYLNTVTVSPDGSLC 207
Query: 353 LTGGADQIVKMWMYREG 369
+GG D +W EG
Sbjct: 208 ASGGKDGQAMLWDLNEG 224
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/233 (20%), Positives = 88/233 (37%), Gaps = 23/233 (9%)
Query: 148 IRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPN- 206
+R+W + T R + F+ D + I+SG D I+ + G K+ + +
Sbjct: 87 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQDE 145
Query: 207 AHNRGVTALAITQDGTR--LLSGGGEGQVRIWKLTRESQSLQCVLKE----HTSSVSVIQ 260
+H+ V+ + + + + ++S G + V++W L C LK HT ++ +
Sbjct: 146 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA------NCKLKTNHIGHTGYLNTVT 199
Query: 261 IKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDY 320
+ D S DG +LWDL + + P+ L +T I
Sbjct: 200 VSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC-AATGPSIKI 258
Query: 321 WETCDGSIIRSLE------GSDVAAVNCVDFV--DDGKYFLTGGADQIVKMWM 365
W+ I+ L+ S C DG+ G D +V++W
Sbjct: 259 WDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 311
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 13/248 (5%)
Query: 172 IVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEG 231
+ F+ +G+ + S D I+ + GK + I + H G++ +A + D L+S +
Sbjct: 28 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDK 86
Query: 232 QVRIWKLTRESQSLQCV--LKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXX 289
++IW ++ S +C+ LK H++ V S +S S D + +WD +K+ +
Sbjct: 87 TLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCL 141
Query: 290 XXXXXXXXXXAAYHPSE--VQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVD 347
+A H + +++ S + + W+T G +++L D V+ V F
Sbjct: 142 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 201
Query: 348 DGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKIS---PDKKVIVSVSADGGIF 404
+GKY L D +K+W Y +G GH I + K IVS S D ++
Sbjct: 202 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 261
Query: 405 LWTFPELE 412
+W E
Sbjct: 262 IWNLQTKE 269
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H I D+ + + + + + ++IW V + L + + C F I+
Sbjct: 63 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 122
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRES 242
SG D +R + ++GK +P AH+ V+A+ +DG+ ++S +G RIW T
Sbjct: 123 SGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASG 180
Query: 243 QSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIK 284
Q L+ ++ + VS ++ + K ++A+ D T LWD K
Sbjct: 181 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 222
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 39/221 (17%)
Query: 302 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 361
+ P+ L + S +K+I W DG +++ G + ++ V + D ++ D+ +
Sbjct: 30 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDDKTL 88
Query: 362 KMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW---------TFPELE 412
K+W G GH+ + +P +IVS S D + +W T P
Sbjct: 89 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 148
Query: 413 DDVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCD 472
D V ++ +++ S + + W+T
Sbjct: 149 DPVS-----------------------------AVHFNRDGSLIVSSSYDGLCRIWDTAS 179
Query: 473 GSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKICLY 513
G +++L D V+ V F +GKY L D +K+ Y
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 220
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 2/168 (1%)
Query: 240 RESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKST-RXXXXXXXXXXX 298
+ + +L+ L HT +VS ++ + + S+S D +W
Sbjct: 9 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 68
Query: 299 XAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGAD 358
A+ L++ S +K + W+ G +++L+G V C +F ++G D
Sbjct: 69 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-NYVFCCNFNPQSNLIVSGSFD 127
Query: 359 QIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+ V++W + G H+ ++ + + D +IVS S DG +W
Sbjct: 128 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
Query: 83 GISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
GIS + ++ +N + + + + + D++SG L + H++ ++ F + + +
Sbjct: 66 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSG 124
Query: 143 CSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKF 202
+RIW V+T L + + + + F DG I+S DG R + SG+
Sbjct: 125 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 184
Query: 203 IIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTR 240
+ + N V+ + + +G +L+ + +++W ++
Sbjct: 185 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 222
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 13/248 (5%)
Query: 172 IVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEG 231
+ F+ +G+ + S D I+ + GK + I + H G++ +A + D L+S +
Sbjct: 29 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDK 87
Query: 232 QVRIWKLTRESQSLQCV--LKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXX 289
++IW ++ S +C+ LK H++ V S +S S D + +WD +K+ +
Sbjct: 88 TLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCL 142
Query: 290 XXXXXXXXXXAAYHPSE--VQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVD 347
+A H + +++ S + + W+T G +++L D V+ V F
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202
Query: 348 DGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKIS---PDKKVIVSVSADGGIF 404
+GKY L D +K+W Y +G GH I + K IVS S D ++
Sbjct: 203 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262
Query: 405 LWTFPELE 412
+W E
Sbjct: 263 IWNLQTKE 270
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H I D+ + + + + + ++IW V + L + + C F I+
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 123
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRES 242
SG D +R + ++GK +P AH+ V+A+ +DG+ ++S +G RIW T
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASG 181
Query: 243 QSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIK 284
Q L+ ++ + VS ++ + K ++A+ D T LWD K
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 39/221 (17%)
Query: 302 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 361
+ P+ L + S +K+I W DG +++ G + ++ V + D ++ D+ +
Sbjct: 31 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDDKTL 89
Query: 362 KMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW---------TFPELE 412
K+W G GH+ + +P +IVS S D + +W T P
Sbjct: 90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Query: 413 DDVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCD 472
D V ++ +++ S + + W+T
Sbjct: 150 DPVS-----------------------------AVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 473 GSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKICLY 513
G +++L D V+ V F +GKY L D +K+ Y
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 2/168 (1%)
Query: 240 RESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKST-RXXXXXXXXXXX 298
+ + +L+ L HT +VS ++ + + S+S D +W
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 69
Query: 299 XAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGAD 358
A+ L++ S +K + W+ G +++L+G V C +F ++G D
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-NYVFCCNFNPQSNLIVSGSFD 128
Query: 359 QIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+ V++W + G H+ ++ + + D +IVS S DG +W
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
Query: 83 GISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
GIS + ++ +N + + + + + D++SG L + H++ ++ F + + +
Sbjct: 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSG 125
Query: 143 CSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKF 202
+RIW V+T L + + + + F DG I+S DG R + SG+
Sbjct: 126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 203 IIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTR 240
+ + N V+ + + +G +L+ + +++W ++
Sbjct: 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 13/248 (5%)
Query: 172 IVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEG 231
+ F+ +G+ + S D I+ + GK + I + H G++ +A + D L+S +
Sbjct: 29 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDK 87
Query: 232 QVRIWKLTRESQSLQCV--LKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXX 289
++IW ++ S +C+ LK H++ V S +S S D + +WD +K+ +
Sbjct: 88 TLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCL 142
Query: 290 XXXXXXXXXXAAYHPSE--VQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVD 347
+A H + +++ S + + W+T G +++L D V+ V F
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202
Query: 348 DGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKIS---PDKKVIVSVSADGGIF 404
+GKY L D +K+W Y +G GH I + K IVS S D ++
Sbjct: 203 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262
Query: 405 LWTFPELE 412
+W E
Sbjct: 263 IWNLQTKE 270
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H I D+ + + + + + ++IW V + L + + C F I+
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 123
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRES 242
SG D +R + ++GK +P AH+ V+A+ +DG+ ++S +G RIW T
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASG 181
Query: 243 QSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIK 284
Q L+ ++ + VS ++ + K ++A+ D T LWD K
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 39/221 (17%)
Query: 302 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 361
+ P+ L + S +K+I W DG +++ G + ++ V + D ++ D+ +
Sbjct: 31 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDDKTL 89
Query: 362 KMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW---------TFPELE 412
K+W G GH+ + +P +IVS S D + +W T P
Sbjct: 90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Query: 413 DDVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCD 472
D V ++ +++ S + + W+T
Sbjct: 150 DPVS-----------------------------AVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 473 GSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKICLY 513
G +++L D V+ V F +GKY L D +K+ Y
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 2/168 (1%)
Query: 240 RESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKST-RXXXXXXXXXXX 298
+ + +L+ L HT +VS ++ + + S+S D +W
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 69
Query: 299 XAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGAD 358
A+ L++ S +K + W+ G +++L+G V C +F ++G D
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-NYVFCCNFNPQSNLIVSGSFD 128
Query: 359 QIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+ V++W + G H+ ++ + + D +IVS S DG +W
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
Query: 83 GISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
GIS + ++ +N + + + + + D++SG L + H++ ++ F + + +
Sbjct: 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSG 125
Query: 143 CSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKF 202
+RIW V+T L + + + + F DG I+S DG R + SG+
Sbjct: 126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 203 IIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTR 240
+ + N V+ + + +G +L+ + +++W ++
Sbjct: 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 13/248 (5%)
Query: 172 IVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEG 231
+ F+ +G+ + S D I+ + GK + I + H G++ +A + D L+S +
Sbjct: 32 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 232 QVRIWKLTRESQSLQCV--LKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXX 289
++IW ++ S +C+ LK H++ V S +S S D + +WD +K+ +
Sbjct: 91 TLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCL 145
Query: 290 XXXXXXXXXXAAYHPSE--VQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVD 347
+A H + +++ S + + W+T G +++L D V+ V F
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 348 DGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKIS---PDKKVIVSVSADGGIF 404
+GKY L D +K+W Y +G GH I + K IVS S D ++
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 265
Query: 405 LWTFPELE 412
+W E
Sbjct: 266 IWNLQTKE 273
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H I D+ + + + + + ++IW V + L + + C F I+
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRES 242
SG D +R + ++GK +P AH+ V+A+ +DG+ ++S +G RIW T
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASG 184
Query: 243 QSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIK 284
Q L+ ++ + VS ++ + K ++A+ D T LWD K
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 75/180 (41%), Gaps = 2/180 (1%)
Query: 228 GGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKST- 286
GG+ R + + + +L+ L HT +VS ++ + + S+S D +W
Sbjct: 1 GGQQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 60
Query: 287 RXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFV 346
A+ L++ S +K + W+ G +++L+G V C +F
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-NYVFCCNFN 119
Query: 347 DDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
++G D+ V++W + G H+ ++ + + D +IVS S DG +W
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 39/221 (17%)
Query: 302 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 361
+ P+ L + S +K+I W DG +++ G + ++ V + D ++ D+ +
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDDKTL 92
Query: 362 KMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW---------TFPELE 412
K+W G GH+ + +P +IVS S D + +W T P
Sbjct: 93 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 413 DDVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCD 472
D V ++ +++ S + + W+T
Sbjct: 153 DPV-----------------------------SAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 473 GSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKICLY 513
G +++L D V+ V F +GKY L D +K+ Y
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
Query: 83 GISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
GIS + ++ +N + + + + + D++SG L + H++ ++ F + + +
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSG 128
Query: 143 CSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKF 202
+RIW V+T L + + + + F DG I+S DG R + SG+
Sbjct: 129 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 203 IIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTR 240
+ + N V+ + + +G +L+ + +++W ++
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 13/248 (5%)
Query: 172 IVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEG 231
+ F+ +G+ + S D I+ + GK + I + H G++ +A + D L+S +
Sbjct: 25 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDK 83
Query: 232 QVRIWKLTRESQSLQCV--LKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXX 289
++IW ++ S +C+ LK H++ V S +S S D + +WD +K+ +
Sbjct: 84 TLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCL 138
Query: 290 XXXXXXXXXXAAYHPSE--VQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVD 347
+A H + +++ S + + W+T G +++L D V+ V F
Sbjct: 139 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 198
Query: 348 DGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKIS---PDKKVIVSVSADGGIF 404
+GKY L D +K+W Y +G GH I + K IVS S D ++
Sbjct: 199 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 258
Query: 405 LWTFPELE 412
+W E
Sbjct: 259 IWNLQTKE 266
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H I D+ + + + + + ++IW V + L + + C F I+
Sbjct: 60 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 119
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRES 242
SG D +R + ++GK +P AH+ V+A+ +DG+ ++S +G RIW T
Sbjct: 120 SGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASG 177
Query: 243 QSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIK 284
Q L+ ++ + VS ++ + K ++A+ D T LWD K
Sbjct: 178 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 219
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 39/221 (17%)
Query: 302 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 361
+ P+ L + S +K+I W DG +++ G + ++ V + D ++ D+ +
Sbjct: 27 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDDKTL 85
Query: 362 KMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW---------TFPELE 412
K+W G GH+ + +P +IVS S D + +W T P
Sbjct: 86 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 145
Query: 413 DDVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCD 472
D V ++ +++ S + + W+T
Sbjct: 146 DPVS-----------------------------AVHFNRDGSLIVSSSYDGLCRIWDTAS 176
Query: 473 GSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKICLY 513
G +++L D V+ V F +GKY L D +K+ Y
Sbjct: 177 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 217
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 2/168 (1%)
Query: 240 RESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKST-RXXXXXXXXXXX 298
+ + +L+ L HT +VS ++ + + S+S D +W
Sbjct: 6 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 65
Query: 299 XAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGAD 358
A+ L++ S +K + W+ G +++L+G V C +F ++G D
Sbjct: 66 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-NYVFCCNFNPQSNLIVSGSFD 124
Query: 359 QIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+ V++W + G H+ ++ + + D +IVS S DG +W
Sbjct: 125 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
Query: 83 GISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
GIS + ++ +N + + + + + D++SG L + H++ ++ F + + +
Sbjct: 63 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSG 121
Query: 143 CSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKF 202
+RIW V+T L + + + + F DG I+S DG R + SG+
Sbjct: 122 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 181
Query: 203 IIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTR 240
+ + N V+ + + +G +L+ + +++W ++
Sbjct: 182 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 219
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 110/250 (44%), Gaps = 13/250 (5%)
Query: 170 ACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGG 229
+ + F+ +G+ + S D I+ + GK + I + H G++ +A + D L+S
Sbjct: 33 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASD 91
Query: 230 EGQVRIWKLTRESQSLQCV--LKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTR 287
+ ++IW ++ S +C+ LK H++ V S +S S D + +WD +K+ +
Sbjct: 92 DKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGK 146
Query: 288 XXXXXXXXXXXXAAYHPSE--VQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDF 345
+A H + +++ S + + W+T G +++L D V+ V F
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 346 VDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKIS---PDKKVIVSVSADGG 402
+GKY L D +K+W Y +G GH I + K IVS S D
Sbjct: 207 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 266
Query: 403 IFLWTFPELE 412
+++W E
Sbjct: 267 VYIWNLQTKE 276
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H I D+ + + + + + ++IW V + L + + C F I+
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 129
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRES 242
SG D +R + ++GK +P AH+ V+A+ +DG+ ++S +G RIW T
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASG 187
Query: 243 QSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIK 284
Q L+ ++ + VS ++ + K ++A+ D T LWD K
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 39/221 (17%)
Query: 302 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 361
+ P+ L + S +K+I W DG +++ G + ++ V + D ++ D+ +
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDDKTL 95
Query: 362 KMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW---------TFPELE 412
K+W G GH+ + +P +IVS S D + +W T P
Sbjct: 96 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 413 DDVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCD 472
D V ++ +++ S + + W+T
Sbjct: 156 DPVS-----------------------------AVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 473 GSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKICLY 513
G +++L D V+ V F +GKY L D +K+ Y
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 2/168 (1%)
Query: 240 RESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKST-RXXXXXXXXXXX 298
+ + +L+ L HT +VS ++ + + S+S D +W
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 75
Query: 299 XAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGAD 358
A+ L++ S +K + W+ G +++L+G V C +F ++G D
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-NYVFCCNFNPQSNLIVSGSFD 134
Query: 359 QIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+ V++W + G H+ ++ + + D +IVS S DG +W
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
Query: 83 GISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
GIS + ++ +N + + + + + D++SG L + H++ ++ F + + +
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSG 131
Query: 143 CSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKF 202
+RIW V+T L + + + + F DG I+S DG R + SG+
Sbjct: 132 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 203 IIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTR 240
+ + N V+ + + +G +L+ + +++W ++
Sbjct: 192 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 110/250 (44%), Gaps = 13/250 (5%)
Query: 170 ACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGG 229
+ + F+ +G+ + S D I+ + GK + I + H G++ +A + D L+S
Sbjct: 44 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASD 102
Query: 230 EGQVRIWKLTRESQSLQCV--LKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTR 287
+ ++IW ++ S +C+ LK H++ V S +S S D + +WD +K+ +
Sbjct: 103 DKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGK 157
Query: 288 XXXXXXXXXXXXAAYHPSE--VQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDF 345
+A H + +++ S + + W+T G +++L D V+ V F
Sbjct: 158 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 217
Query: 346 VDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKIS---PDKKVIVSVSADGG 402
+GKY L D +K+W Y +G GH I + K IVS S D
Sbjct: 218 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 277
Query: 403 IFLWTFPELE 412
+++W E
Sbjct: 278 VYIWNLQTKE 287
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H I D+ + + + + + ++IW V + L + + C F I+
Sbjct: 81 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 140
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRES 242
SG D +R + ++GK +P AH+ V+A+ +DG+ ++S +G RIW T
Sbjct: 141 SGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASG 198
Query: 243 QSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIK 284
Q L+ ++ + VS ++ + K ++A+ D T LWD K
Sbjct: 199 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 240
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 39/221 (17%)
Query: 302 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 361
+ P+ L + S +K+I W DG +++ G + ++ V + D ++ D+ +
Sbjct: 48 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDDKTL 106
Query: 362 KMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW---------TFPELE 412
K+W G GH+ + +P +IVS S D + +W T P
Sbjct: 107 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 166
Query: 413 DDVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCD 472
D V ++ +++ S + + W+T
Sbjct: 167 DPVS-----------------------------AVHFNRDGSLIVSSSYDGLCRIWDTAS 197
Query: 473 GSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKICLY 513
G +++L D V+ V F +GKY L D +K+ Y
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 238
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 2/168 (1%)
Query: 240 RESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKST-RXXXXXXXXXXX 298
+ + +L+ L HT +VS ++ + + S+S D +W
Sbjct: 27 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 86
Query: 299 XAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGAD 358
A+ L++ S +K + W+ G +++L+G V C +F ++G D
Sbjct: 87 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-NYVFCCNFNPQSNLIVSGSFD 145
Query: 359 QIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+ V++W + G H+ ++ + + D +IVS S DG +W
Sbjct: 146 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
Query: 83 GISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
GIS + ++ +N + + + + + D++SG L + H++ ++ F + + +
Sbjct: 84 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSG 142
Query: 143 CSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKF 202
+RIW V+T L + + + + F DG I+S DG R + SG+
Sbjct: 143 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 202
Query: 203 IIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTR 240
+ + N V+ + + +G +L+ + +++W ++
Sbjct: 203 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 240
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 13/248 (5%)
Query: 172 IVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEG 231
+ F+ +G+ + S D I+ + GK + I + H G++ +A + D L+S +
Sbjct: 30 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDK 88
Query: 232 QVRIWKLTRESQSLQCV--LKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXX 289
++IW ++ S +C+ LK H++ V S +S S D + +WD +K+ +
Sbjct: 89 TLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCL 143
Query: 290 XXXXXXXXXXAAYHPSE--VQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVD 347
+A H + +++ S + + W+T G +++L D V+ V F
Sbjct: 144 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 203
Query: 348 DGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKIS---PDKKVIVSVSADGGIF 404
+GKY L D +K+W Y +G GH I + K IVS S D ++
Sbjct: 204 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 263
Query: 405 LWTFPELE 412
+W E
Sbjct: 264 IWNLQTKE 271
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H I D+ + + + + + ++IW V + L + + C F I+
Sbjct: 65 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 124
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRES 242
SG D +R + ++GK +P AH+ V+A+ +DG+ ++S +G RIW T
Sbjct: 125 SGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASG 182
Query: 243 QSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIK 284
Q L+ ++ + VS ++ + K ++A+ D T LWD K
Sbjct: 183 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 224
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 39/221 (17%)
Query: 302 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 361
+ P+ L + S +K+I W DG +++ G + ++ V + D ++ D+ +
Sbjct: 32 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDDKTL 90
Query: 362 KMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW---------TFPELE 412
K+W G GH+ + +P +IVS S D + +W T P
Sbjct: 91 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 150
Query: 413 DDVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCD 472
D V ++ +++ S + + W+T
Sbjct: 151 DPVS-----------------------------AVHFNRDGSLIVSSSYDGLCRIWDTAS 181
Query: 473 GSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKICLY 513
G +++L D V+ V F +GKY L D +K+ Y
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 222
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 2/168 (1%)
Query: 240 RESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKST-RXXXXXXXXXXX 298
+ + +L+ L HT +VS ++ + + S+S D +W
Sbjct: 11 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 70
Query: 299 XAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGAD 358
A+ L++ S +K + W+ G +++L+G V C +F ++G D
Sbjct: 71 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-NYVFCCNFNPQSNLIVSGSFD 129
Query: 359 QIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+ V++W + G H+ ++ + + D +IVS S DG +W
Sbjct: 130 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
Query: 83 GISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
GIS + ++ +N + + + + + D++SG L + H++ ++ F + + +
Sbjct: 68 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSG 126
Query: 143 CSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKF 202
+RIW V+T L + + + + F DG I+S DG R + SG+
Sbjct: 127 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 186
Query: 203 IIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTR 240
+ + N V+ + + +G +L+ + +++W ++
Sbjct: 187 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 224
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 13/248 (5%)
Query: 172 IVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEG 231
+ F+ +G+ + S D I+ + GK + I + H G++ +A + D L+S +
Sbjct: 32 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 232 QVRIWKLTRESQSLQCV--LKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXX 289
++IW ++ S +C+ LK H++ V S +S S D + +WD +K+ +
Sbjct: 91 TLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCL 145
Query: 290 XXXXXXXXXXAAYHPSE--VQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVD 347
+A H + +++ S + + W+T G +++L D V+ V F
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 348 DGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKIS---PDKKVIVSVSADGGIF 404
+GKY L D +K+W Y +G GH I + K IVS S D ++
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 265
Query: 405 LWTFPELE 412
+W E
Sbjct: 266 IWNLQTKE 273
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H I D+ + + + + + ++IW V + L + + C F I+
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRES 242
SG D +R + ++GK +P AH+ V+A+ +DG+ ++S +G RIW T
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASG 184
Query: 243 QSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIK 284
Q L+ ++ + VS ++ + K ++A+ D T LWD K
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 75/180 (41%), Gaps = 2/180 (1%)
Query: 228 GGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKST- 286
GG+ R + + + +L+ L HT +VS ++ + + S+S D +W
Sbjct: 1 GGQQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 60
Query: 287 RXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFV 346
A+ L++ S +K + W+ G +++L+G V C +F
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-NYVFCCNFN 119
Query: 347 DDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
++G D+ V++W + G H+ ++ + + D +IVS S DG +W
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 39/221 (17%)
Query: 302 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 361
+ P+ L + S +K+I W DG +++ G + ++ V + D ++ D+ +
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDDKTL 92
Query: 362 KMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW---------TFPELE 412
K+W G GH+ + +P +IVS S D + +W T P
Sbjct: 93 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 413 DDVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCD 472
D V ++ +++ S + + W+T
Sbjct: 153 DPV-----------------------------SAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 473 GSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKICLY 513
G +++L D V+ V F +GKY L D +K+ Y
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
Query: 83 GISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
GIS + ++ +N + + + + + D++SG L + H++ ++ F + + +
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSG 128
Query: 143 CSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKF 202
+RIW V+T L + + + + F DG I+S DG R + SG+
Sbjct: 129 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 203 IIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTR 240
+ + N V+ + + +G +L+ + +++W ++
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 13/248 (5%)
Query: 172 IVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEG 231
+ F+ +G+ + S D I+ + GK + I + H G++ +A + D L+S +
Sbjct: 35 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDK 93
Query: 232 QVRIWKLTRESQSLQCV--LKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXX 289
++IW ++ S +C+ LK H++ V S +S S D + +WD +K+ +
Sbjct: 94 TLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCL 148
Query: 290 XXXXXXXXXXAAYHPSE--VQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVD 347
+A H + +++ S + + W+T G +++L D V+ V F
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 208
Query: 348 DGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKIS---PDKKVIVSVSADGGIF 404
+GKY L D +K+W Y +G GH I + K IVS S D ++
Sbjct: 209 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Query: 405 LWTFPELE 412
+W E
Sbjct: 269 IWNLQTKE 276
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H I D+ + + + + + ++IW V + L + + C F I+
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 129
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRES 242
SG D +R + ++GK +P AH+ V+A+ +DG+ ++S +G RIW T
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASG 187
Query: 243 QSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIK 284
Q L+ ++ + VS ++ + K ++A+ D T LWD K
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 39/221 (17%)
Query: 302 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 361
+ P+ L + S +K+I W DG +++ G + ++ V + D ++ D+ +
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDDKTL 95
Query: 362 KMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW---------TFPELE 412
K+W G GH+ + +P +IVS S D + +W T P
Sbjct: 96 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 413 DDVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCD 472
D V ++ +++ S + + W+T
Sbjct: 156 DPVS-----------------------------AVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 473 GSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKICLY 513
G +++L D V+ V F +GKY L D +K+ Y
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 2/168 (1%)
Query: 240 RESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKST-RXXXXXXXXXXX 298
+ + +L+ L HT +VS ++ + + S+S D +W
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 75
Query: 299 XAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGAD 358
A+ L++ S +K + W+ G +++L+G V C +F ++G D
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-NYVFCCNFNPQSNLIVSGSFD 134
Query: 359 QIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+ V++W + G H+ ++ + + D +IVS S DG +W
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
Query: 83 GISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
GIS + ++ +N + + + + + D++SG L + H++ ++ F + + +
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSG 131
Query: 143 CSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKF 202
+RIW V+T L + + + + F DG I+S DG R + SG+
Sbjct: 132 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 203 IIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTR 240
+ + N V+ + + +G +L+ + +++W ++
Sbjct: 192 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 13/248 (5%)
Query: 172 IVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEG 231
+ F+ +G+ + S D I+ + GK + I + H G++ +A + D L+S +
Sbjct: 35 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDK 93
Query: 232 QVRIWKLTRESQSLQCV--LKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXX 289
++IW ++ S +C+ LK H++ V S +S S D + +WD +K+ +
Sbjct: 94 TLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCL 148
Query: 290 XXXXXXXXXXAAYHPSE--VQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVD 347
+A H + +++ S + + W+T G +++L D V+ V F
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 208
Query: 348 DGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKIS---PDKKVIVSVSADGGIF 404
+GKY L D +K+W Y +G GH I + K IVS S D ++
Sbjct: 209 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Query: 405 LWTFPELE 412
+W E
Sbjct: 269 IWNLQTKE 276
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H I D+ + + + + + ++IW V + L + + C F I+
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 129
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRES 242
SG D +R + ++GK +P AH+ V+A+ +DG+ ++S +G RIW T
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASG 187
Query: 243 QSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIK 284
Q L+ ++ + VS ++ + K ++A+ D T LWD K
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 39/221 (17%)
Query: 302 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 361
+ P+ L + S +K+I W DG +++ G + ++ V + D ++ D+ +
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDDKTL 95
Query: 362 KMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW---------TFPELE 412
K+W G GH+ + +P +IVS S D + +W T P
Sbjct: 96 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 413 DDVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCD 472
D V ++ +++ S + + W+T
Sbjct: 156 DPVS-----------------------------AVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 473 GSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKICLY 513
G +++L D V+ V F +GKY L D +K+ Y
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 2/168 (1%)
Query: 240 RESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKST-RXXXXXXXXXXX 298
+ + +L+ L HT +VS ++ + + S+S D +W
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 75
Query: 299 XAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGAD 358
A+ L++ S +K + W+ G +++L+G V C +F ++G D
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-NYVFCCNFNPQSNLIVSGSFD 134
Query: 359 QIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+ V++W + G H+ ++ + + D +IVS S DG +W
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
Query: 83 GISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
GIS + ++ +N + + + + + D++SG L + H++ ++ F + + +
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSG 131
Query: 143 CSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKF 202
+RIW V+T L + + + + F DG I+S DG R + SG+
Sbjct: 132 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 203 IIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTR 240
+ + N V+ + + +G +L+ + +++W ++
Sbjct: 192 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 13/248 (5%)
Query: 172 IVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEG 231
+ F+ +G+ + S D I+ + GK + I + H G++ +A + D L+S +
Sbjct: 34 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDK 92
Query: 232 QVRIWKLTRESQSLQCV--LKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXX 289
++IW ++ S +C+ LK H++ V S +S S D + +WD +K+ +
Sbjct: 93 TLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCL 147
Query: 290 XXXXXXXXXXAAYHPSE--VQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVD 347
+A H + +++ S + + W+T G +++L D V+ V F
Sbjct: 148 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 207
Query: 348 DGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKIS---PDKKVIVSVSADGGIF 404
+GKY L D +K+W Y +G GH I + K IVS S D ++
Sbjct: 208 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 267
Query: 405 LWTFPELE 412
+W E
Sbjct: 268 IWNLQTKE 275
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H I D+ + + + + + ++IW V + L + + C F I+
Sbjct: 69 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 128
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRES 242
SG D +R + ++GK +P AH+ V+A+ +DG+ ++S +G RIW T
Sbjct: 129 SGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASG 186
Query: 243 QSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIK 284
Q L+ ++ + VS ++ + K ++A+ D T LWD K
Sbjct: 187 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 228
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 39/221 (17%)
Query: 302 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 361
+ P+ L + S +K+I W DG +++ G + ++ V + D ++ D+ +
Sbjct: 36 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDDKTL 94
Query: 362 KMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW---------TFPELE 412
K+W G GH+ + +P +IVS S D + +W T P
Sbjct: 95 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 154
Query: 413 DDVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCD 472
D V ++ +++ S + + W+T
Sbjct: 155 DPVS-----------------------------AVHFNRDGSLIVSSSYDGLCRIWDTAS 185
Query: 473 GSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKICLY 513
G +++L D V+ V F +GKY L D +K+ Y
Sbjct: 186 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 226
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 2/168 (1%)
Query: 240 RESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKST-RXXXXXXXXXXX 298
+ + +L+ L HT +VS ++ + + S+S D +W
Sbjct: 15 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 74
Query: 299 XAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGAD 358
A+ L++ S +K + W+ G +++L+G V C +F ++G D
Sbjct: 75 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-NYVFCCNFNPQSNLIVSGSFD 133
Query: 359 QIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+ V++W + G H+ ++ + + D +IVS S DG +W
Sbjct: 134 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
Query: 83 GISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
GIS + ++ +N + + + + + D++SG L + H++ ++ F + + +
Sbjct: 72 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSG 130
Query: 143 CSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKF 202
+RIW V+T L + + + + F DG I+S DG R + SG+
Sbjct: 131 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 190
Query: 203 IIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTR 240
+ + N V+ + + +G +L+ + +++W ++
Sbjct: 191 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 228
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 105/247 (42%), Gaps = 11/247 (4%)
Query: 172 IVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEG 231
+ F+ +G+ + S D I+ + GK + I + H G++ +A + D L+S +
Sbjct: 32 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 232 QVRIWKLTRESQSLQCV--LKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXX 289
++IW ++ S +C+ LK H++ V S +S S D + +WD+
Sbjct: 91 TLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLK 146
Query: 290 XXXXXXXXXXAAYHPSEVQLITCST-NKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDD 348
A + + LI S+ + + W+T G +++L D V+ V F +
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 206
Query: 349 GKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKIS---PDKKVIVSVSADGGIFL 405
GKY L D +K+W Y +G GH I + K IVS S D +++
Sbjct: 207 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYI 266
Query: 406 WTFPELE 412
W E
Sbjct: 267 WNLQTKE 273
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 2/162 (1%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H I D+ + + + + + ++IW V + L + + C F I+
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRES 242
SG D +R + ++G +P AH+ V+A+ +DG+ ++S +G RIW T
Sbjct: 127 SGSFDESVRIWDVKTGMCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASG 184
Query: 243 QSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIK 284
Q L+ ++ + VS ++ + K ++A+ D T LWD K
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 39/221 (17%)
Query: 302 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 361
+ P+ L + S +K+I W DG +++ G + ++ V + D ++ D+ +
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDDKTL 92
Query: 362 KMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW---------TFPELE 412
K+W G GH+ + +P +IVS S D + +W T P
Sbjct: 93 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 413 DDVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCD 472
D V ++ +++ S + + W+T
Sbjct: 153 DPVS-----------------------------AVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 473 GSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKICLY 513
G +++L D V+ V F +GKY L D +K+ Y
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 2/168 (1%)
Query: 240 RESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKST-RXXXXXXXXXXX 298
+ + +L L HT +VS ++ + + S+S D +W
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 299 XAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGAD 358
A+ L++ S +K + W+ G +++L+G V C +F ++G D
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-NYVFCCNFNPQSNLIVSGSFD 131
Query: 359 QIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+ V++W + G+ H+ ++ + + D +IVS S DG +W
Sbjct: 132 ESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
Query: 83 GISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
GIS + ++ +N + + + + + D++SG L + H++ ++ F + + +
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSG 128
Query: 143 CSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKF 202
+RIW V+T L + + + + F DG I+S DG R + SG+
Sbjct: 129 SFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 203 IIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTR 240
+ + N V+ + + +G +L+ + +++W ++
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 110/250 (44%), Gaps = 13/250 (5%)
Query: 170 ACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGG 229
+ + F+ +G+ + S D I+ + GK + I + H G++ +A + D L+S
Sbjct: 51 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASD 109
Query: 230 EGQVRIWKLTRESQSLQCV--LKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTR 287
+ ++IW ++ S +C+ LK H++ V S +S S D + +WD +K+ +
Sbjct: 110 DKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGK 164
Query: 288 XXXXXXXXXXXXAAYHPSE--VQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDF 345
+A H + +++ S + + W+T G +++L D V+ V F
Sbjct: 165 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 224
Query: 346 VDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKIS---PDKKVIVSVSADGG 402
+GKY L D +K+W Y +G GH I + K IVS S D
Sbjct: 225 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 284
Query: 403 IFLWTFPELE 412
+++W E
Sbjct: 285 VYIWNLQTKE 294
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H I D+ + + + + + ++IW V + L + + C F I+
Sbjct: 88 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 147
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRES 242
SG D +R + ++GK +P AH+ V+A+ +DG+ ++S +G RIW T
Sbjct: 148 SGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASG 205
Query: 243 QSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIK 284
Q L+ ++ + VS ++ + K ++A+ D T LWD K
Sbjct: 206 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 247
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 39/221 (17%)
Query: 302 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 361
+ P+ L + S +K+I W DG +++ G + ++ V + D ++ D+ +
Sbjct: 55 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDDKTL 113
Query: 362 KMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW---------TFPELE 412
K+W G GH+ + +P +IVS S D + +W T P
Sbjct: 114 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 173
Query: 413 DDVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCD 472
D V ++ +++ S + + W+T
Sbjct: 174 DPVS-----------------------------AVHFNRDGSLIVSSSYDGLCRIWDTAS 204
Query: 473 GSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKICLY 513
G +++L D V+ V F +GKY L D +K+ Y
Sbjct: 205 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 245
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 2/168 (1%)
Query: 240 RESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKST-RXXXXXXXXXXX 298
+ + +L+ L HT +VS ++ + + S+S D +W
Sbjct: 34 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 93
Query: 299 XAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGAD 358
A+ L++ S +K + W+ G +++L+G V C +F ++G D
Sbjct: 94 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-NYVFCCNFNPQSNLIVSGSFD 152
Query: 359 QIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+ V++W + G H+ ++ + + D +IVS S DG +W
Sbjct: 153 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
Query: 83 GISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
GIS + ++ +N + + + + + D++SG L + H++ ++ F + + +
Sbjct: 91 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSG 149
Query: 143 CSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKF 202
+RIW V+T L + + + + F DG I+S DG R + SG+
Sbjct: 150 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 209
Query: 203 IIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTR 240
+ + N V+ + + +G +L+ + +++W ++
Sbjct: 210 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 247
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 110/250 (44%), Gaps = 13/250 (5%)
Query: 170 ACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGG 229
+ + F+ +G+ + S D I+ + GK + I + H G++ +A + D L+S
Sbjct: 49 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASD 107
Query: 230 EGQVRIWKLTRESQSLQCV--LKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTR 287
+ ++IW ++ S +C+ LK H++ V S +S S D + +WD +K+ +
Sbjct: 108 DKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGK 162
Query: 288 XXXXXXXXXXXXAAYHPSE--VQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDF 345
+A H + +++ S + + W+T G +++L D V+ V F
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 346 VDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKIS---PDKKVIVSVSADGG 402
+GKY L D +K+W Y +G GH I + K IVS S D
Sbjct: 223 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 282
Query: 403 IFLWTFPELE 412
+++W E
Sbjct: 283 VYIWNLQTKE 292
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H I D+ + + + + + ++IW V + L + + C F I+
Sbjct: 86 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 145
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRES 242
SG D +R + ++GK +P AH+ V+A+ +DG+ ++S +G RIW T
Sbjct: 146 SGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASG 203
Query: 243 QSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIK 284
Q L+ ++ + VS ++ + K ++A+ D T LWD K
Sbjct: 204 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 245
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 39/221 (17%)
Query: 302 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 361
+ P+ L + S +K+I W DG +++ G + ++ V + D ++ D+ +
Sbjct: 53 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDDKTL 111
Query: 362 KMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW---------TFPELE 412
K+W G GH+ + +P +IVS S D + +W T P
Sbjct: 112 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 171
Query: 413 DDVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCD 472
D V ++ +++ S + + W+T
Sbjct: 172 DPVS-----------------------------AVHFNRDGSLIVSSSYDGLCRIWDTAS 202
Query: 473 GSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKICLY 513
G +++L D V+ V F +GKY L D +K+ Y
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 243
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 2/168 (1%)
Query: 240 RESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKST-RXXXXXXXXXXX 298
+ + +L+ L HT +VS ++ + + S+S D +W
Sbjct: 32 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 91
Query: 299 XAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGAD 358
A+ L++ S +K + W+ G +++L+G V C +F ++G D
Sbjct: 92 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-NYVFCCNFNPQSNLIVSGSFD 150
Query: 359 QIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+ V++W + G H+ ++ + + D +IVS S DG +W
Sbjct: 151 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
Query: 83 GISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
GIS + ++ +N + + + + + D++SG L + H++ ++ F + + +
Sbjct: 89 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSG 147
Query: 143 CSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKF 202
+RIW V+T L + + + + F DG I+S DG R + SG+
Sbjct: 148 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 203 IIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTR 240
+ + N V+ + + +G +L+ + +++W ++
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 245
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 105/247 (42%), Gaps = 11/247 (4%)
Query: 172 IVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEG 231
+ F+ +G+ + S D I+ + GK + I + H G++ +A + D L+S +
Sbjct: 32 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 232 QVRIWKLTRESQSLQCV--LKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXX 289
++IW ++ S +C+ LK H++ V S +S S D + +WD+
Sbjct: 91 TLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLK 146
Query: 290 XXXXXXXXXXAAYHPSEVQLITCST-NKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDD 348
A + + LI S+ + + W+T G +++L D V+ V F +
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 206
Query: 349 GKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKIS---PDKKVIVSVSADGGIFL 405
GKY L D +K+W Y +G GH I + K IVS S D +++
Sbjct: 207 GKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYI 266
Query: 406 WTFPELE 412
W E
Sbjct: 267 WNLQTKE 273
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 2/162 (1%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H I D+ + + + + + ++IW V + L + + C F I+
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRES 242
SG D +R + ++G +P AH+ V+A+ +DG+ ++S +G RIW T
Sbjct: 127 SGSFDESVRIWDVKTGMCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASG 184
Query: 243 QSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIK 284
Q L+ ++ + VS ++ + K ++A+ D LWD K
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSK 226
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 2/168 (1%)
Query: 240 RESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKST-RXXXXXXXXXXX 298
+ + +L L HT +VS ++ + + S+S D +W
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 299 XAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGAD 358
A+ L++ S +K + W+ G +++L+G V C +F ++G D
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-NYVFCCNFNPQSNLIVSGSFD 131
Query: 359 QIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+ V++W + G+ H+ ++ + + D +IVS S DG +W
Sbjct: 132 ESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 39/221 (17%)
Query: 302 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 361
+ P+ L + S +K+I W DG +++ G + ++ V + D ++ D+ +
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDDKTL 92
Query: 362 KMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW---------TFPELE 412
K+W G GH+ + +P +IVS S D + +W T P
Sbjct: 93 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 413 DDVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCD 472
D V ++ +++ S + + W+T
Sbjct: 153 DPVS-----------------------------AVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 473 GSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKICLY 513
G +++L D V+ V F +GKY L D +K+ Y
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDY 224
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
Query: 83 GISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
GIS + ++ +N + + + + + D++SG L + H++ ++ F + + +
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSG 128
Query: 143 CSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKF 202
+RIW V+T L + + + + F DG I+S DG R + SG+
Sbjct: 129 SFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 203 IIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTR 240
+ + N V+ + + +G +L+ + +++W ++
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSK 226
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 109/248 (43%), Gaps = 13/248 (5%)
Query: 172 IVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEG 231
+ F+ +G+ + + D I+ + GK + I + H G++ +A + D L+S +
Sbjct: 32 VKFSPNGEWLAASSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 232 QVRIWKLTRESQSLQCV--LKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXX 289
++IW ++ S +C+ LK H++ V S +S S D + +WD +K+ +
Sbjct: 91 TLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCL 145
Query: 290 XXXXXXXXXXAAYHPSE--VQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVD 347
+A H + +++ S + + W+T G +++L D V+ V F
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 348 DGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKIS---PDKKVIVSVSADGGIF 404
+GKY L D +K+W Y +G GH I + K IVS S D ++
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 265
Query: 405 LWTFPELE 412
+W E
Sbjct: 266 IWNLQTKE 273
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H I D+ + + + + + ++IW V + L + + C F I+
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRES 242
SG D +R + ++GK +P AH+ V+A+ +DG+ ++S +G RIW T
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASG 184
Query: 243 QSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIK 284
Q L+ ++ + VS ++ + K ++A+ D T LWD K
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 75/180 (41%), Gaps = 2/180 (1%)
Query: 228 GGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKST- 286
GG+ R + + + +L+ L HT +VS ++ + + ++S D +W
Sbjct: 1 GGQQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKF 60
Query: 287 RXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFV 346
A+ L++ S +K + W+ G +++L+G V C +F
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-NYVFCCNFN 119
Query: 347 DDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
++G D+ V++W + G H+ ++ + + D +IVS S DG +W
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 81/221 (36%), Gaps = 39/221 (17%)
Query: 302 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 361
+ P+ L S +K+I W DG +++ G + ++ V + D ++ D+ +
Sbjct: 34 FSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDDKTL 92
Query: 362 KMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW---------TFPELE 412
K+W G GH+ + +P +IVS S D + +W T P
Sbjct: 93 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 413 DDVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCD 472
D V ++ +++ S + + W+T
Sbjct: 153 DPV-----------------------------SAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 473 GSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKICLY 513
G +++L D V+ V F +GKY L D +K+ Y
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/246 (19%), Positives = 100/246 (40%), Gaps = 7/246 (2%)
Query: 83 GISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
GIS + ++ +N + + + + + D++SG L + H++ ++ F + + +
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSG 128
Query: 143 CSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKF 202
+RIW V+T L + + + + F DG I+S DG R + SG+
Sbjct: 129 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 203 IIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIK 262
+ + N V+ + + +G +L+ + +++W ++ + L+ +
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANF 247
Query: 263 S--DSKEAMSASTDGTCVLWDL-IKSTRXXXXXXXXXXXXAAYHPSE--VQLITCSTNKM 317
S K +S S D +W+L K A HP+E + +K
Sbjct: 248 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 307
Query: 318 IDYWET 323
I W++
Sbjct: 308 IKLWKS 313
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 93/216 (43%), Gaps = 13/216 (6%)
Query: 206 NAHNRGVTALAITQDGTRLL-SGGGEGQVRIWKLTRESQSL---QCVLKEHTSSVSVIQI 261
AH VTA+A D ++ S + + +WKLT++ ++ Q L H+ V + +
Sbjct: 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVL 438
Query: 262 KSDSKEAMSASTDGTCVLWDLIK--STRXXXXXXXXXXXXAAYHPSEVQLITCSTNKMID 319
SD + A+S S DG LWDL STR A+ Q+++ S ++ I
Sbjct: 439 SSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLS-VAFSLDNRQIVSASRDRTIK 497
Query: 320 YWET---CDGSIIRSLEGSDVAAVNCVDFVDD--GKYFLTGGADQIVKMWMYREGVPCFV 374
W T C +I EG V+CV F + ++ D+ VK+W
Sbjct: 498 LWNTLGECKYTISEGGEGHR-DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST 556
Query: 375 GIGHAASITKIKISPDKKVIVSVSADGGIFLWTFPE 410
GH ++ + +SPD + S DG + LW E
Sbjct: 557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 11/205 (5%)
Query: 208 HNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKE 267
H+ V + ++ DG LSG +G++R+W L + + V HT V + D+++
Sbjct: 429 HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV--GHTKDVLSVAFSLDNRQ 486
Query: 268 AMSASTDGTCVLWDLIKSTRXXXXXXXXXXXX----AAYHPSEVQ--LITCSTNKMIDYW 321
+SAS D T LW+ + + + P+ +Q +++ S +K + W
Sbjct: 487 IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW 546
Query: 322 ETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAAS 381
+ + +L G V+ V DG +GG D +V +W EG + + +
Sbjct: 547 NLSNCKLRSTLAGH-TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY-SLEANSV 604
Query: 382 ITKIKISPDKKVIVSVSADGGIFLW 406
I + SP++ + + + + GI +W
Sbjct: 605 IHALCFSPNRYWLCAAT-EHGIKIW 628
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/325 (19%), Positives = 117/325 (36%), Gaps = 79/325 (24%)
Query: 113 GFTLTLVNTCHTSAIYDLQFPVNFSSVFATCSKND-IRIWSVRTLNELL-----RISVMN 166
G L HT + + P++ + + + S++ I +W + ++ R++ +
Sbjct: 371 GLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS 430
Query: 167 MICACIVFTYDGKAILSGWNDGFIRCFTPQSG--KLKFIIPNAHNRGVTALAITQDGTRL 224
+V + DG+ LSG DG +R + +G +F+ H + V ++A + D ++
Sbjct: 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---GHTKDVLSVAFSLDNRQI 487
Query: 225 LSG---------------------GGEGQ--------------------------VRIWK 237
+S GGEG V++W
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 238 LTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXXX 297
L+ + L+ L HT VS + + D S DG +LWDL + +
Sbjct: 548 LS--NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVI 605
Query: 298 XXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSL-----------EGSDVAAVN----- 341
+ P+ L +T I W+ SI+ L + S AA
Sbjct: 606 HALCFSPNRYWLC-AATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIY 664
Query: 342 --CVDFVDDGKYFLTGGADQIVKMW 364
+++ DG +G D ++++W
Sbjct: 665 CTSLNWSADGSTLFSGYTDGVIRVW 689
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 101/245 (41%), Gaps = 20/245 (8%)
Query: 172 IVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEG 231
I FT DGK ++S D I+ + Q+G F+ AH V + QD +RLLS +G
Sbjct: 1016 IQFTADGKTLISSSEDSVIQVWNWQTGDYVFL--QAHQETVKDFRLLQD-SRLLSWSFDG 1072
Query: 232 QVRIWKLT--RESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDL-IKSTRX 288
V++W + R + C H +V I SD+ + S S D T +W + S
Sbjct: 1073 TVKVWNVITGRIERDFTC----HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH 1128
Query: 289 XXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSL------EGSDVAA--V 340
+A+ + L T N I W DG ++ S EG+ V
Sbjct: 1129 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWV 1188
Query: 341 NCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSAD 400
V F D K ++ G +K W G + ++ KI +SPD + V+V
Sbjct: 1189 TDVCFSPDSKTLVSAGG--YLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNL 1246
Query: 401 GGIFL 405
G +++
Sbjct: 1247 GILYI 1251
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 301 AYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFL--TGGAD 358
A+ + + TCS +K + W++ G ++ + + VNC F + + L TG D
Sbjct: 671 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSND 729
Query: 359 QIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+K+W + GH S+ + SPD +++ S SADG + LW
Sbjct: 730 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/305 (19%), Positives = 116/305 (38%), Gaps = 20/305 (6%)
Query: 118 LVNTCHTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYD 177
LV HT A+Y F + + + + ++++ T +LL I C F+ D
Sbjct: 616 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD 675
Query: 178 GKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLL--SGGGEGQVRI 235
I + D ++ + +GKL + H+ V T LL +G + +++
Sbjct: 676 DSYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 734
Query: 236 WKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXX 295
W L + + + + HT+SV+ + D + S S DGT LWD+ +
Sbjct: 735 WDLNQ--KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 792
Query: 296 XXXXAAYHPSEVQ--------------LITCSTNKMIDYWETCDGSIIRSLEGSDVAAVN 341
+ P +V+ +I + NK++ ++ ++ + + +
Sbjct: 793 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQ 851
Query: 342 CVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADG 401
DF + + V++W + GH + + + SPD ++ S D
Sbjct: 852 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQ 911
Query: 402 GIFLW 406
I +W
Sbjct: 912 TIRVW 916
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 23/300 (7%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKN-DIRIWSVRTLNELLRISV-------------MNMI 168
HT+++ +F + + A+CS + +R+W VR+ NE I+V + +I
Sbjct: 749 HTNSVNHCRFSPD-DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 807
Query: 169 CACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGG 228
C ++ DG I+ + + F + L I H+ + + +
Sbjct: 808 VKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 866
Query: 229 GEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRX 288
+ V +W + + C + H S V + D ++AS D T +W+ K +
Sbjct: 867 SQYCVELWNIDSRLKVADC--RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 924
Query: 289 XXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDD 348
+ +E ++ + + G I E A V+C
Sbjct: 925 SAIVLKQEID-VVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPE----AQVSCCCLSPH 979
Query: 349 GKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLWTF 408
+Y G D +K+ G+GH ++ I+ + D K ++S S D I +W +
Sbjct: 980 LEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1039
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/342 (18%), Positives = 132/342 (38%), Gaps = 15/342 (4%)
Query: 67 LYSAGVTALYLLKDDSGISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTC--HT 124
++++G+ A S I ++P ++ + + L +++S V C H
Sbjct: 833 IHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK---VADCRGHL 889
Query: 125 SAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSG 184
S ++ + F + SS IR+W + + + I + I +VF + +L+
Sbjct: 890 SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID--VVFQENETMVLAV 947
Query: 185 WNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQS 244
N ++ ++G++ ++ P A V+ ++ + G +G ++I +L
Sbjct: 948 DNIRGLQLIAGKTGQIDYL-PEAQ---VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF 1003
Query: 245 LQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXXXXXAAYHP 304
V H +V IQ +D K +S+S D +W+ ++
Sbjct: 1004 SSGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNW-QTGDYVFLQAHQETVKDFRLL 1060
Query: 305 SEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMW 364
+ +L++ S + + W G I R ++C D F + AD+ K+W
Sbjct: 1061 QDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCA-ISSDATKFSSTSADKTAKIW 1119
Query: 365 MYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+ P GH + S D ++ + +G I +W
Sbjct: 1120 SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1161
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 8/117 (6%)
Query: 121 TCHTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKA 180
TCH + + + +T + +IWS L+ L + N C F+ DG
Sbjct: 1089 TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGIL 1148
Query: 181 ILSGWNDGFIRCFTPQSGKLKFIIPN--------AHNRGVTALAITQDGTRLLSGGG 229
+ +G ++G IR + G+L H VT + + D L+S GG
Sbjct: 1149 LATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG 1205
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 448 AYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFL--TGGAD 505
A+ + + TCS +K + W++ G ++ + + VNC F + + L TG D
Sbjct: 671 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSND 729
Query: 506 QIVKI 510
+K+
Sbjct: 730 FFLKL 734
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 101/245 (41%), Gaps = 20/245 (8%)
Query: 172 IVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEG 231
I FT DGK ++S D I+ + Q+G F+ AH V + QD +RLLS +G
Sbjct: 1009 IQFTADGKTLISSSEDSVIQVWNWQTGDYVFL--QAHQETVKDFRLLQD-SRLLSWSFDG 1065
Query: 232 QVRIWKLT--RESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDL-IKSTRX 288
V++W + R + C H +V I SD+ + S S D T +W + S
Sbjct: 1066 TVKVWNVITGRIERDFTC----HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH 1121
Query: 289 XXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSL------EGSDVAA--V 340
+A+ + L T N I W DG ++ S EG+ V
Sbjct: 1122 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWV 1181
Query: 341 NCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSAD 400
V F D K ++ G +K W G + ++ KI +SPD + V+V
Sbjct: 1182 TDVCFSPDSKTLVSAGG--YLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNL 1239
Query: 401 GGIFL 405
G +++
Sbjct: 1240 GILYI 1244
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 301 AYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFL--TGGAD 358
A+ + + TCS +K + W++ G ++ + + VNC F + + L TG D
Sbjct: 664 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSND 722
Query: 359 QIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+K+W + GH S+ + SPD +++ S SADG + LW
Sbjct: 723 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/305 (19%), Positives = 116/305 (38%), Gaps = 20/305 (6%)
Query: 118 LVNTCHTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYD 177
LV HT A+Y F + + + + ++++ T +LL I C F+ D
Sbjct: 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD 668
Query: 178 GKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLL--SGGGEGQVRI 235
I + D ++ + +GKL + H+ V T LL +G + +++
Sbjct: 669 DSYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727
Query: 236 WKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXX 295
W L + + + + HT+SV+ + D + S S DGT LWD+ +
Sbjct: 728 WDLNQ--KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 785
Query: 296 XXXXAAYHPSEVQ--------------LITCSTNKMIDYWETCDGSIIRSLEGSDVAAVN 341
+ P +V+ +I + NK++ ++ ++ + + +
Sbjct: 786 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQ 844
Query: 342 CVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADG 401
DF + + V++W + GH + + + SPD ++ S D
Sbjct: 845 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQ 904
Query: 402 GIFLW 406
I +W
Sbjct: 905 TIRVW 909
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 23/300 (7%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKN-DIRIWSVRTLNELLRISV-------------MNMI 168
HT+++ +F + + A+CS + +R+W VR+ NE I+V + +I
Sbjct: 742 HTNSVNHCRFSPD-DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 800
Query: 169 CACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGG 228
C ++ DG I+ + + F + L I H+ + + +
Sbjct: 801 VKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 859
Query: 229 GEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRX 288
+ V +W + + C + H S V + D ++AS D T +W+ K +
Sbjct: 860 SQYCVELWNIDSRLKVADC--RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 917
Query: 289 XXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDD 348
+ +E ++ + + G I E A V+C
Sbjct: 918 SAIVLKQEID-VVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPE----AQVSCCCLSPH 972
Query: 349 GKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLWTF 408
+Y G D +K+ G+GH ++ I+ + D K ++S S D I +W +
Sbjct: 973 LEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/342 (18%), Positives = 132/342 (38%), Gaps = 15/342 (4%)
Query: 67 LYSAGVTALYLLKDDSGISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTC--HT 124
++++G+ A S I ++P ++ + + L +++S V C H
Sbjct: 826 IHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK---VADCRGHL 882
Query: 125 SAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSG 184
S ++ + F + SS IR+W + + + I + I +VF + +L+
Sbjct: 883 SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID--VVFQENETMVLAV 940
Query: 185 WNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQS 244
N ++ ++G++ ++ P A V+ ++ + G +G ++I +L
Sbjct: 941 DNIRGLQLIAGKTGQIDYL-PEAQ---VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF 996
Query: 245 LQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXXXXXAAYHP 304
V H +V IQ +D K +S+S D +W+ ++
Sbjct: 997 SSGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNW-QTGDYVFLQAHQETVKDFRLL 1053
Query: 305 SEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMW 364
+ +L++ S + + W G I R ++C D F + AD+ K+W
Sbjct: 1054 QDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCA-ISSDATKFSSTSADKTAKIW 1112
Query: 365 MYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+ P GH + S D ++ + +G I +W
Sbjct: 1113 SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 8/117 (6%)
Query: 121 TCHTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKA 180
TCH + + + +T + +IWS L+ L + N C F+ DG
Sbjct: 1082 TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGIL 1141
Query: 181 ILSGWNDGFIRCFTPQSGKLKFIIPN--------AHNRGVTALAITQDGTRLLSGGG 229
+ +G ++G IR + G+L H VT + + D L+S GG
Sbjct: 1142 LATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG 1198
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 448 AYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFL--TGGAD 505
A+ + + TCS +K + W++ G ++ + + VNC F + + L TG D
Sbjct: 664 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSND 722
Query: 506 QIVKI 510
+K+
Sbjct: 723 FFLKL 727
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 85/211 (40%), Gaps = 11/211 (5%)
Query: 208 HNRGVTALAITQDGTRLLSGGGEGQVRI-WKLTRESQSLQCVLKEHTSSVSVIQ---IKS 263
HN VT+LA + LL + I WKLT + Q ++ ++Q + +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 264 DSKEAMSASTDGTCVLWDLIK-STRXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWE 322
D A+SAS D T LWD+ T +I+ S +K I W
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW- 134
Query: 323 TCDGSIIRSLEG-----SDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIG 377
T G + +L G S V V DD ++ G D++VK W + IG
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 194
Query: 378 HAASITKIKISPDKKVIVSVSADGGIFLWTF 408
H ++I + SPD +I S DG I LW
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/255 (18%), Positives = 87/255 (34%), Gaps = 16/255 (6%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H+ + D + + + +R+W V T R + I+
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAIT------QDGTRLLSGGGEGQVRIW 236
SG D I+ +T + L ++ HN V+ + + D ++S G + V+ W
Sbjct: 124 SGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 237 KLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXX 296
L + ++ H S+++ + D SA DG +LW+L
Sbjct: 182 NLNQFQ--IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 239
Query: 297 XXXAAYHPSEVQLITCSTNKM----IDYWETCDGSIIRSLEGSDVAAVNCVDFV--DDGK 350
A+ P+ L + + +D D S A + V DG+
Sbjct: 240 VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 299
Query: 351 YFLTGGADQIVKMWM 365
G D ++++W
Sbjct: 300 TLFAGYTDNVIRVWQ 314
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 85/211 (40%), Gaps = 11/211 (5%)
Query: 208 HNRGVTALAITQDGTRLLSGGGEGQVRI-WKLTRESQSLQCVLKEHTSSVSVIQ---IKS 263
HN VT+LA + LL + I WKLT + Q ++ ++Q + +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 264 DSKEAMSASTDGTCVLWDLIK-STRXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWE 322
D A+SAS D T LWD+ T +I+ S +K I W
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW- 134
Query: 323 TCDGSIIRSLEG-----SDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIG 377
T G + +L G S V V DD ++ G D++VK W + IG
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 194
Query: 378 HAASITKIKISPDKKVIVSVSADGGIFLWTF 408
H ++I + SPD +I S DG I LW
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/256 (17%), Positives = 89/256 (34%), Gaps = 18/256 (7%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H+ + D + + + +R+W V T R + I+
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAIT------QDGTRLLSGGGEGQVRIW 236
SG D I+ +T + L ++ HN V+ + + D ++S G + V+ W
Sbjct: 124 SGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 237 KLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXX 296
L + ++ H S+++ + D SA DG +LW+L
Sbjct: 182 NLNQFQ--IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 239
Query: 297 XXXAAYHPSEVQLITCSTNKM----IDYWETCDGSIIRSLEGSDVAA---VNCVDFVDDG 349
A+ P+ L + + +D D + G AA + + DG
Sbjct: 240 VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVD-DLRPEFAGYSAAAEPHAVSLAWSADG 298
Query: 350 KYFLTGGADQIVKMWM 365
+ G D ++++W
Sbjct: 299 QTLFAGYTDNVIRVWQ 314
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 85/211 (40%), Gaps = 11/211 (5%)
Query: 208 HNRGVTALAITQDGTRLLSGGGEGQVRI-WKLTRESQSLQCVLKEHTSSVSVIQ---IKS 263
HN VT+LA + LL + I WKLT + Q ++ ++Q + +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 264 DSKEAMSASTDGTCVLWDLIK-STRXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWE 322
D A+SAS D T LWD+ T +I+ S +K I W
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW- 134
Query: 323 TCDGSIIRSLEG-----SDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIG 377
T G + +L G S V V DD ++ G D++VK W + IG
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 194
Query: 378 HAASITKIKISPDKKVIVSVSADGGIFLWTF 408
H ++I + SPD +I S DG I LW
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/255 (18%), Positives = 89/255 (34%), Gaps = 18/255 (7%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H+ + D + + + +R+W V T R + I+
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAIT------QDGTRLLSGGGEGQVRIW 236
SG D I+ +T + L ++ HN V+ + + D ++S G + V+ W
Sbjct: 124 SGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 237 KLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXX 296
L + ++ H S+++ + D SA DG +LW+L
Sbjct: 182 NLNQFQ--IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 239
Query: 297 XXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEG-----SDVAAVNCVDFV--DDG 349
A+ P+ L +T I + ++ L S A + V DG
Sbjct: 240 VFSLAFSPNRYWL-AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298
Query: 350 KYFLTGGADQIVKMW 364
+ G D ++++W
Sbjct: 299 QTLFAGYTDNVIRVW 313
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 85/211 (40%), Gaps = 11/211 (5%)
Query: 208 HNRGVTALAITQDGTRLLSGGGEGQVRI-WKLTRESQSLQCVLKEHTSSVSVIQ---IKS 263
HN VT+LA + LL + I WKLT + Q ++ ++Q + +
Sbjct: 10 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 69
Query: 264 DSKEAMSASTDGTCVLWDLIK-STRXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWE 322
D A+SAS D T LWD+ T +I+ S +K I W
Sbjct: 70 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW- 128
Query: 323 TCDGSIIRSLEG-----SDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIG 377
T G + +L G S V V DD ++ G D++VK W + IG
Sbjct: 129 TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 188
Query: 378 HAASITKIKISPDKKVIVSVSADGGIFLWTF 408
H ++I + SPD +I S DG I LW
Sbjct: 189 HNSNINTLTASPDGTLIASAGKDGEIMLWNL 219
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/255 (18%), Positives = 87/255 (34%), Gaps = 16/255 (6%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H+ + D + + + +R+W V T R + I+
Sbjct: 58 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 117
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAIT------QDGTRLLSGGGEGQVRIW 236
SG D I+ +T + L ++ HN V+ + + D ++S G + V+ W
Sbjct: 118 SGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 175
Query: 237 KLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXX 296
L + ++ H S+++ + D SA DG +LW+L
Sbjct: 176 NLNQFQ--IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 233
Query: 297 XXXAAYHPSEVQLITCSTNKM----IDYWETCDGSIIRSLEGSDVAAVNCVDFV--DDGK 350
A+ P+ L + + +D D S A + V DG+
Sbjct: 234 VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 293
Query: 351 YFLTGGADQIVKMWM 365
G D ++++W
Sbjct: 294 TLFAGYTDNVIRVWQ 308
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 85/211 (40%), Gaps = 11/211 (5%)
Query: 208 HNRGVTALAITQDGTRLLSGGGEGQVRI-WKLTRESQSLQCVLKEHTSSVSVIQ---IKS 263
HN VT+LA + LL + I WKLT + Q ++ ++Q + +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 264 DSKEAMSASTDGTCVLWDLIK-STRXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWE 322
D A+SAS D T LWD+ T +I+ S +K I W
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW- 134
Query: 323 TCDGSIIRSLEG-----SDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIG 377
T G + +L G S V V DD ++ G D++VK W + IG
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 194
Query: 378 HAASITKIKISPDKKVIVSVSADGGIFLWTF 408
H ++I + SPD +I S DG I LW
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/255 (18%), Positives = 87/255 (34%), Gaps = 16/255 (6%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H+ + D + + + +R+W V T R + I+
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAIT------QDGTRLLSGGGEGQVRIW 236
SG D I+ +T + L ++ HN V+ + + D ++S G + V+ W
Sbjct: 124 SGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 237 KLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXX 296
L + ++ H S+++ + D SA DG +LW+L
Sbjct: 182 NLNQFQ--IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 239
Query: 297 XXXAAYHPSEVQLITCSTNKM----IDYWETCDGSIIRSLEGSDVAAVNCVDFV--DDGK 350
A+ P+ L + + +D D S A + V DG+
Sbjct: 240 VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 299
Query: 351 YFLTGGADQIVKMWM 365
G D ++++W
Sbjct: 300 TLFAGYTDNVIRVWQ 314
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 85/211 (40%), Gaps = 11/211 (5%)
Query: 208 HNRGVTALAITQDGTRLLSGGGEGQVRI-WKLTRESQSLQCVLKEHTSSVSVIQ---IKS 263
HN VT+LA + LL + I WKLT + Q ++ ++Q + +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 264 DSKEAMSASTDGTCVLWDLIK-STRXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWE 322
D A+SAS D T LWD+ T +I+ S +K I W
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW- 134
Query: 323 TCDGSIIRSLEG-----SDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIG 377
T G + +L G S V V DD ++ G D+ VK W + IG
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIG 194
Query: 378 HAASITKIKISPDKKVIVSVSADGGIFLWTF 408
H ++I + SPD +I S DG I LW
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIXLWNL 225
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/255 (18%), Positives = 87/255 (34%), Gaps = 16/255 (6%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H+ + D + + + +R+W V T R + I+
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXII 123
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAIT------QDGTRLLSGGGEGQVRIW 236
SG D I+ +T + L ++ HN V+ + + D ++S G + V+ W
Sbjct: 124 SGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAW 181
Query: 237 KLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXX 296
L + ++ H S+++ + D SA DG LW+L
Sbjct: 182 NLNQFQ--IEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDE 239
Query: 297 XXXAAYHPSEVQLITCSTNKM----IDYWETCDGSIIRSLEGSDVAAVNCVDFV--DDGK 350
A+ P+ L + + +D D S A + V DG+
Sbjct: 240 VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 299
Query: 351 YFLTGGADQIVKMWM 365
G D ++++W
Sbjct: 300 TLFAGYTDNVIRVWQ 314
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 90/220 (40%), Gaps = 23/220 (10%)
Query: 219 QDGTRLLSGGGEGQVRIWKLTRESQS-----LQCVLKEHTSSVSVIQIKSDSKEAMSAST 273
+D L+SG + V IWKL E Q+ L H VS + + ++ A+S+S
Sbjct: 37 EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW 96
Query: 274 DGTCVLWDL-IKSTRXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSL 332
D T LWDL +T A+ P Q+++ + I W S
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA 156
Query: 333 EGSDVA-AVNCVDFVDDGK----------YFLTGGADQIVKMWMYREGVPCFVGIGHAAS 381
E + + V+CV + K YF + G D +K+W + + H ++
Sbjct: 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIR-YTFKAHESN 215
Query: 382 ITKIKISPDKKVIVSVSADGGIFLW-----TFPELEDDVG 416
+ + ISP+ K I + D + +W T+P+ E D G
Sbjct: 216 VNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAG 255
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 71/180 (39%), Gaps = 20/180 (11%)
Query: 121 TCHTSAIYDLQFPVNFSSVFATCSKND--IRIWSVRTLNELLRISVMNMICACIVFTYDG 178
T H + DL ++ + FA S D +R+W +RT R + F+ D
Sbjct: 73 TGHNHFVSDL--ALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN 130
Query: 179 KAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRG------------VTALAITQDGTRLLS 226
+ ILS + I+ + G+ KF N +A + S
Sbjct: 131 RQILSAGAEREIKLWNIL-GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFAS 189
Query: 227 GGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKST 286
G +G++++W + ++ K H S+V+ + I + K + D ++WD++ T
Sbjct: 190 VGWDGRLKVWNTNFQ---IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 89/229 (38%), Gaps = 46/229 (20%)
Query: 180 AILSGWNDGFIRCFTPQSGKL--KFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWK 237
AI S W D +R + ++G +F+ H V ++A + D ++LS G E ++++W
Sbjct: 91 AISSSW-DKTLRLWDLRTGTTYKRFV---GHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
Query: 238 LTRESQSLQCVLKEHTSSVSVIQ---IKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXX 294
+ E + + H+ VS ++ I + + + V WD
Sbjct: 147 ILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD------------- 193
Query: 295 XXXXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLT 354
+L +TN I Y ++ E + VN + +GKY T
Sbjct: 194 ------------GRLKVWNTNFQIRY-------TFKAHESN----VNHLSISPNGKYIAT 230
Query: 355 GGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGI 403
GG D+ + +W ++I +I +P K V+V D G+
Sbjct: 231 GGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNP-KLQWVAVGTDQGV 278
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 104/254 (40%), Gaps = 11/254 (4%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H++ + D+ N + + + +R+W+++ + + F+ D + I+
Sbjct: 66 HSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIV 125
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQ--DGTRLLSGGGEGQVRIWKLTR 240
SG D +R + + + + AH V+ + + D ++SGG + V++W L
Sbjct: 126 SGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA- 184
Query: 241 ESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXXXXXA 300
+ L LK HT+ V+ + + D S+ DG LWDL K
Sbjct: 185 -TGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQI 243
Query: 301 AYHPSEVQLITCSTNKMIDYWETCDGSIIRSL----EGSDVAAVNCVD--FVDDGKYFLT 354
+ P+ + +T K I ++ + II L +GS CV + DG +
Sbjct: 244 CFSPNRYWMC-AATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYS 302
Query: 355 GGADQIVKMWMYRE 368
G D ++++W E
Sbjct: 303 GYTDNVIRVWGVSE 316
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 15/220 (6%)
Query: 207 AHNRGVTALAITQD---GTRLLSGGGEGQVRIWKLTRESQSLQCV-------LKEHTSSV 256
H VT+LA Q T+++S + + W + S +C L+ H++ V
Sbjct: 11 GHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFV 70
Query: 257 SVIQIKSDSKEAMSASTDGTCVLWDLIKST-RXXXXXXXXXXXXAAYHPSEVQLITCSTN 315
S + + ++ A+SAS D + LW+L + A+ P Q+++ +
Sbjct: 71 SDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRD 130
Query: 316 KMIDYWETCDGSIIRSL-EGSDVAAVNCVDFVD--DGKYFLTGGADQIVKMWMYREGVPC 372
+ W G + +L G+ V+CV F D ++GG D +VK+W G
Sbjct: 131 NALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLV 189
Query: 373 FVGIGHAASITKIKISPDKKVIVSVSADGGIFLWTFPELE 412
GH +T + +SPD + S DG LW + E
Sbjct: 190 TDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGE 229
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 109/271 (40%), Gaps = 28/271 (10%)
Query: 166 NMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLL 225
++ + F+ DGK + +G D IR + ++ K+ I+ H + + +L G +L+
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPSGDKLV 181
Query: 226 SGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWD---- 281
SG G+ VRIW L SL +++ ++V+V D K + S D +WD
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS--PGDGKYIAAGSLDRAVRVWDSETG 239
Query: 282 ----LIKSTRXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCDG-----SIIRSL 332
+ S + +++ S ++ + W + S +
Sbjct: 240 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299
Query: 333 EGSDVAAVNCVDFV------DDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIK 386
+V + DFV + +Y L+G D+ V W + G P + GH S+ +
Sbjct: 300 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 359
Query: 387 IS------PDKKVIVSVSADGGIFLWTFPEL 411
++ P+ V + S D +W + ++
Sbjct: 360 VANGSSLGPEYNVFATGSGDCKARIWKYKKI 390
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 101/260 (38%), Gaps = 42/260 (16%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H IY L + + + + +RIW +RT L +S+ + + V DGK I
Sbjct: 164 HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA 223
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPN------AHNRGVTALAITQDGTRLLSGGGEGQVRIW 236
+G D +R + ++G L + + H V ++ T+DG ++SG + V++W
Sbjct: 224 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283
Query: 237 KLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXX 296
L + KSDSK S GTC +
Sbjct: 284 NLQNANN------------------KSDSKTPNS----GTCEV---------TYIGHKDF 312
Query: 297 XXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGS-----DVAAVNCVDFVDDGKY 351
A ++ +++ S ++ + +W+ G+ + L+G VA N +
Sbjct: 313 VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 372
Query: 352 FLTGGADQIVKMWMYREGVP 371
F TG D ++W Y++ P
Sbjct: 373 FATGSGDCKARIWKYKKIAP 392
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 21/118 (17%)
Query: 308 QLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVN-------------------CVDFVDD 348
+ + NK + DGS++ L SD +A N V F D
Sbjct: 77 EYLATGCNKTTQVYRVSDGSLVARL--SDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 134
Query: 349 GKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
GK+ TG D+++++W + GH I + P +VS S D + +W
Sbjct: 135 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 128/307 (41%), Gaps = 26/307 (8%)
Query: 82 SGISSLQYNPVNNKVFVGTVNCEIFLIDMNSG-FTLTLVNTCHTSAIYDLQFPVNFSSVF 140
S ++ + ++PV + + + + I + D +G F TL HT ++ D+ F + +
Sbjct: 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG--HTDSVQDISFD-HSGKLL 165
Query: 141 ATCSKN-DIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGK 199
A+CS + I++W + + + + + + +G I+S D I+ + Q+G
Sbjct: 166 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 225
Query: 200 LKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIW---------KLTRESQSLQCVLK 250
H V + QDGT + S + VR+W +L ++C+
Sbjct: 226 CVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW 284
Query: 251 EHTSSVSVIQ--IKSDSKEA-------MSASTDGTCVLWDLIKST-RXXXXXXXXXXXXA 300
SS S I S++K++ +S S D T +WD+
Sbjct: 285 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV 344
Query: 301 AYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQI 360
+H +++C+ +K + W+ + +++L + V +DF Y +TG DQ
Sbjct: 345 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE-HFVTSLDFHKTAPYVVTGSVDQT 403
Query: 361 VKMWMYR 367
VK+W R
Sbjct: 404 VKVWECR 410
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 104/290 (35%), Gaps = 5/290 (1%)
Query: 226 SGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKS 285
SGG GQ R K + L H S V+ + +SAS D T +WD
Sbjct: 81 SGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG 140
Query: 286 --TRXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCV 343
R + H ++ L +CS + I W+ IR++ G D V+ V
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKL-LASCSADMTIKLWDFQGFECIRTMHGHD-HNVSSV 198
Query: 344 DFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGI 403
+ +G + ++ D+ +KMW + G GH + ++ + D +I S S D +
Sbjct: 199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258
Query: 404 FLWTFPELEDDVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYHPSEVQLITCSTNK 463
+W E L++ S +K
Sbjct: 259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318
Query: 464 MIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKICLY 513
I W+ G + +L G D V V F GK+ L+ D+ +++ Y
Sbjct: 319 TIKMWDVSTGMCLMTLVGHD-NWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/327 (20%), Positives = 117/327 (35%), Gaps = 47/327 (14%)
Query: 206 NAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDS 265
+ H VT + + ++S + +++W E+ + LK HT SV I
Sbjct: 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY--ETGDFERTLKGHTDSVQDISFDHSG 162
Query: 266 KEAMSASTDGTCVLWDL--IKSTRXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWET 323
K S S D T LWD + R + P+ +++ S +K I WE
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEV 221
Query: 324 CDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMWM------------YREGVP 371
G +++ G V V DG + DQ V++W+ +R V
Sbjct: 222 QTGYCVKTFTGHR-EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 280
Query: 372 CFVGIGHAA--SITKIKISPDKK------VIVSVSADGGIFLWTFPELEDDVGDXXXXXX 423
C ++ SI++ S KK ++S S D I +W DV
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW-------DVS------- 326
Query: 424 XXXXXXXXXXXXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSD 483
+H +++C+ +K + W+ + +++L +
Sbjct: 327 ------TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 380
Query: 484 VAAVNCVDFVDDGKYFLTGGADQIVKI 510
V +DF Y +TG DQ VK+
Sbjct: 381 -HFVTSLDFHKTAPYVVTGSVDQTVKV 406
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 309 LITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFL--TGGADQIVKMWMY 366
+ TCS +K + W + G ++ + + VNC F + + L TG +D +K+W
Sbjct: 678 IATCSVDKKVKIWNSMTGELVHTYDEHS-EQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 736
Query: 367 REGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+ GH S+ + SPD K++ S SADG + LW
Sbjct: 737 NQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 98/243 (40%), Gaps = 17/243 (6%)
Query: 172 IVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEG 231
I FT D K ++S +D I+ + Q K F+ H V + ++ +RLLS +G
Sbjct: 1015 IQFTADEKTLISSSDDAEIQVWNWQLDKCIFL--RGHQETVKDFRLLKN-SRLLSWSFDG 1071
Query: 232 QVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLW--DLIKSTRXX 289
V++W + ++ V H +V I D+ + S S D T +W DL+
Sbjct: 1072 TVKVWNIITGNKEKDFVC--HQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHEL 1129
Query: 290 XXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIR-----SLEGSDVAAVNCVD 344
+A+ L T N I W +G ++ S EG+ D
Sbjct: 1130 RGHNGCVRC-SAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTD 1188
Query: 345 --FVDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGG 402
F DGK ++ G +K W G + ++ KI +SPD K V+V G
Sbjct: 1189 LCFSPDGKMLISAGG--YIKWWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGI 1246
Query: 403 IFL 405
+++
Sbjct: 1247 LYI 1249
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 94/249 (37%), Gaps = 20/249 (8%)
Query: 174 FTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQV 233
F+ DG+ I S D ++ F ++G+ K + AH V A + D + + + +V
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAETGE-KLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKV 687
Query: 234 RIWK-LTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVL--WDL-IKSTRXX 289
+IW +T E L EH+ V+ + S + A+ C L WDL K R
Sbjct: 688 KIWNSMTGE---LVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNT 744
Query: 290 XXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDV------------ 337
+ P + L +CS + + W+ + +S+
Sbjct: 745 MFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDME 804
Query: 338 AAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSV 397
V C + DG + ++I ++ G+ + GH ++I SP + V
Sbjct: 805 VIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVA 864
Query: 398 SADGGIFLW 406
+ + LW
Sbjct: 865 LSQYCVELW 873
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/339 (20%), Positives = 126/339 (37%), Gaps = 54/339 (15%)
Query: 99 GTVNCEIFLIDMNSGFTLTLVNTC--HTSAIYDLQFPVNFSSVFATCSKN-DIRIWSVRT 155
G+ +C + L D+N NT HT+++ +F + + A+CS + +++W +
Sbjct: 725 GSSDCFLKLWDLNQK---ECRNTMFGHTNSVNHCRFSPD-DKLLASCSADGTLKLWDATS 780
Query: 156 LNELLRISV-------------MNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKF 202
NE I+V M +I C ++ DG I+ + I F + L
Sbjct: 781 ANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNK-IFLFDIHTSGLLG 839
Query: 203 IIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIK 262
I H+ + + + + V +W S+ C + H S V +
Sbjct: 840 EIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADC--RGHLSWVHGVMFS 897
Query: 263 SDSKEAMSASTDGTCVLWD----------LIKSTRXXXXXXXXXXXXAAYHPSEVQLITC 312
D +++S D T LW+ ++K A H +QLI
Sbjct: 898 PDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLING 957
Query: 313 STNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTG---GADQIVKMWMYREG 369
T + IDY A V+C +Y G GA +I+++ R
Sbjct: 958 RTGQ-IDYLTE--------------AQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIF 1002
Query: 370 VPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLWTF 408
F H ++ I+ + D+K ++S S D I +W +
Sbjct: 1003 QSRF---QHKKTVWHIQFTADEKTLISSSDDAEIQVWNW 1038
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Query: 122 CHTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAI 181
CH + + + +T + +IWS L L + N C F+ D +
Sbjct: 1089 CHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLL 1148
Query: 182 LSGWNDGFIRCFTPQSGKLKFIIPNAHNRG-------VTALAITQDGTRLLSGGG 229
+G ++G IR + +G+L + G VT L + DG L+S GG
Sbjct: 1149 ATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGG 1203
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 56/324 (17%), Positives = 128/324 (39%), Gaps = 12/324 (3%)
Query: 85 SSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTC--HTSAIYDLQFPVNFSSVFAT 142
S++QY + + + V + +++ + + + V C H S ++ + F + SS +
Sbjct: 847 STIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS 906
Query: 143 CSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKF 202
IR+W + + + +VM +VF + +L+ + ++ ++G++ +
Sbjct: 907 SDDQTIRLWETKKVCK--NSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDY 964
Query: 203 IIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIK 262
+ V+ ++ + G G + I +L ++ Q +H +V IQ
Sbjct: 965 LTEAQ----VSCCCLSPHLQYIAFGDENGAIEILELVN-NRIFQSRF-QHKKTVWHIQFT 1018
Query: 263 SDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWE 322
+D K +S+S D +W+ + + +L++ S + + W
Sbjct: 1019 ADEKTLISSSDDAEIQVWNW-QLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWN 1077
Query: 323 TCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASI 382
G+ + ++C D D F + AD+ K+W + +P GH +
Sbjct: 1078 IITGNKEKDFVCHQGTVLSC-DISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCV 1136
Query: 383 TKIKISPDKKVIVSVSADGGIFLW 406
S D ++ + +G I +W
Sbjct: 1137 RCSAFSVDSTLLATGDDNGEIRIW 1160
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 456 LITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFL--TGGADQIVKI 510
+ TCS +K + W + G ++ + + VNC F + + L TG +D +K+
Sbjct: 678 IATCSVDKKVKIWNSMTGELVHTYDEHS-EQVNCCHFTNSSHHLLLATGSSDCFLKL 733
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 100/203 (49%), Gaps = 19/203 (9%)
Query: 87 LQYNPVNNKVFVGTVNCEIFLIDMNSGFTL-TLVNTCHTSAIYDLQFPVNFSSVFATCSK 145
LQY+ + G+ + + + D+N+G L TL++ C A+ L+F + + TCSK
Sbjct: 179 LQYD--ERVIITGSSDSTVRVWDVNTGEMLNTLIHHC--EAVLHLRFN---NGMMVTCSK 231
Query: 146 N-DIRIWSVRTLNEL-LRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKFI 203
+ I +W + + ++ LR ++ A V +D K I+S D I+ + + +
Sbjct: 232 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRT 291
Query: 204 IPNAHNRGVTALAITQDGTRLL-SGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIK 262
+ N H RG+ L Q RL+ SG + +R+W + E + VL+ H V I+
Sbjct: 292 L-NGHKRGIACL---QYRDRLVVSGSSDNTIRLWDI--ECGACLRVLEGHEELVRCIRF- 344
Query: 263 SDSKEAMSASTDGTCVLWDLIKS 285
D+K +S + DG +WDL+ +
Sbjct: 345 -DNKRIVSGAYDGKIKVWDLVAA 366
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 17/192 (8%)
Query: 220 DGTRLLSGGGEGQVRIWKLTRESQSLQC--VLKEHTSSVSVIQIKSDSKEAMSASTDGTC 277
D +++SG + ++IW + +L+C +L HT SV +Q D + ++ S+D T
Sbjct: 142 DDQKIVSGLRDNTIKIW----DKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTV 195
Query: 278 VLWDLIKSTRXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETC---DGSIIRSLEG 334
+WD + + + ++TCS ++ I W+ D ++ R L G
Sbjct: 196 RVWD-VNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG 254
Query: 335 SDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVI 394
AAVN VDF D KY ++ D+ +K+W GH I ++ +++
Sbjct: 255 HR-AAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLV 309
Query: 395 VSVSADGGIFLW 406
VS S+D I LW
Sbjct: 310 VSGSSDNTIRLW 321
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 101/278 (36%), Gaps = 36/278 (12%)
Query: 236 WKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXX 295
W+ R SLQ + +S V ++ D ++ +S D T +WD +
Sbjct: 116 WRCGR--HSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDK-NTLECKRILTGH 172
Query: 296 XXXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTG 355
E +IT S++ + W+ G ++ +L AV + F + +T
Sbjct: 173 TGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLI-HHCEAVLHLRF--NNGMMVTC 229
Query: 356 GADQIVKMWMYREGVPC---FVGIGHAASITKIKISPDKKVIVSVSADGGIFLWTFPELE 412
D+ + +W V +GH A++ + D K IVS S D I +W E
Sbjct: 230 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCE 287
Query: 413 DDVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCD 472
A + +++ S++ I W+
Sbjct: 288 ----------------------FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 325
Query: 473 GSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKI 510
G+ +R LEG + V C+ F D K ++G D +K+
Sbjct: 326 GACLRVLEGHE-ELVRCIRF--DNKRIVSGAYDGKIKV 360
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 12/173 (6%)
Query: 206 NAHNRGVTALAIT-QDGTRLLSGGGEGQVRIWKLTRESQ-----SLQCVLKEHTSSVSVI 259
N N G A+T + TR + GG+G V++W ++ L C+ +++ +
Sbjct: 46 NTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNY--IRSC 103
Query: 260 QIKSDSKEAMSASTDGTCVLWDLIKST---RXXXXXXXXXXXXAAYHPSEVQLITCSTNK 316
++ D + T +WDL T + A P +C ++
Sbjct: 104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163
Query: 317 MIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREG 369
I W+ + +++R +G A +C+D +DG TGG D V+ W REG
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGA-SCIDISNDGTKLWTGGLDNTVRSWDLREG 215
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 76/189 (40%), Gaps = 9/189 (4%)
Query: 214 ALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSAST 273
ALAI+ D S +G + +W L +Q+L + HT S I I +D + +
Sbjct: 146 ALAISPDSKVCFSCCSDGNIAVWDL--HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203
Query: 274 DGTCVLWDLIKSTRXXXXXXXXXXXXAAYHPSEVQLITC--STNKMIDYWETCDGSIIRS 331
D T WDL + + Y P+ L S+N + + D +
Sbjct: 204 DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL 263
Query: 332 LEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDK 391
E + V + F GK+F++ G D ++ W G F ++S+ IS D
Sbjct: 264 HE----SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD 318
Query: 392 KVIVSVSAD 400
K IV+ S D
Sbjct: 319 KYIVTGSGD 327
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 92/217 (42%), Gaps = 14/217 (6%)
Query: 148 IRIWSVRTLNELLRISVMNMICAC--IVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIP 205
+ IW + ++ + + AC + + D K S +DG I + + L
Sbjct: 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF- 179
Query: 206 NAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIK-SD 264
H G + + I+ DGT+L +GG + VR W L RE + LQ +H + + +
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL-REGRQLQ----QHDFTSQIFSLGYCP 234
Query: 265 SKEAMSASTDGTCV-LWDLIKSTRXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWET 323
+ E ++ + + V + + K + + ++ + +++ W T
Sbjct: 235 TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294
Query: 324 CDG-SIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQ 359
G SI +S E S V ++C VDD KY +TG D+
Sbjct: 295 PYGASIFQSKESSSV--LSCDISVDD-KYIVTGSGDK 328
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 448 AYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQI 507
A P +C ++ I W+ + +++R +G A +C+D +DG TGG D
Sbjct: 148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA-SCIDISNDGTKLWTGGLDNT 206
Query: 508 VK 509
V+
Sbjct: 207 VR 208
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 345 FVDDGKYFLTGGADQIVKMWMYREGVPCFVG--IGHAASITKIKISPDKKVIVSVSADGG 402
+ DG + GG + +W P A + + ISPD KV S +DG
Sbjct: 105 LLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN 164
Query: 403 IFLW 406
I +W
Sbjct: 165 IAVW 168
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 1/129 (0%)
Query: 72 VTALYLLKDDSGISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVN-TCHTSAIYDL 130
V+ L L D+ I S + P + VG + + D+ + T A Y L
Sbjct: 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 147
Query: 131 QFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFI 190
+ F+ CS +I +W + + + +CI + DG + +G D +
Sbjct: 148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV 207
Query: 191 RCFTPQSGK 199
R + + G+
Sbjct: 208 RSWDLREGR 216
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 89/215 (41%), Gaps = 7/215 (3%)
Query: 194 TPQSGKLKFIIPNAHNRGVTALAI----TQDGTRLLSGGGEGQVRIWKLTRESQSLQCVL 249
T Q G L F AH+ + ++A ++ +++G + V++WK E LQ L
Sbjct: 18 TNQYGIL-FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL 76
Query: 250 KEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXXXXXA-AYHPSEVQ 308
+ H V + I A S+S D LWDL + A+ P
Sbjct: 77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 136
Query: 309 LITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYRE 368
L T + ++ + G SL+ + + + + DGKY +G D I+ ++
Sbjct: 137 LATGTHVGKVNIFGVESGKKEYSLD-TRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT 195
Query: 369 GVPCFVGIGHAASITKIKISPDKKVIVSVSADGGI 403
G GHA I + SPD +++V+ S DG I
Sbjct: 196 GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYI 230
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 79/183 (43%), Gaps = 4/183 (2%)
Query: 100 TVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNEL 159
+++ I L D+ +G + ++ A + L F + + + I+ V + +
Sbjct: 99 SLDAHIRLWDLENGKQIKSIDAGPVDA-WTLAFSPDSQYLATGTHVGKVNIFGVESGKKE 157
Query: 160 LRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQ 219
+ I ++ DGK + SG DG I F +GKL + H + +L +
Sbjct: 158 YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL-EGHAMPIRSLTFSP 216
Query: 220 DGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVL 279
D L++ +G ++I+ + + +L L H S V + D +S+S+D + +
Sbjct: 217 DSQLLVTASDDGYIKIYDV--QHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKV 274
Query: 280 WDL 282
WD+
Sbjct: 275 WDV 277
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 21/160 (13%)
Query: 231 GQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXX 290
G V W L S H V++ ++S KE S T G +L
Sbjct: 121 GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFIL----------- 168
Query: 291 XXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGK 350
AY P L + + + +I+ ++ G ++ +LEG + + F D +
Sbjct: 169 --------SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH-AMPIRSLTFSPDSQ 219
Query: 351 YFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPD 390
+T D +K++ + GHA+ + + PD
Sbjct: 220 LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 259
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 117 TLVNTCHTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMIC-ACIVFT 175
+L N H+ +++ L + + + + + + I+IW+V TL I V I +
Sbjct: 232 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 291
Query: 176 YDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRI 235
+ +A++S +GFI P+ G + + HN+ +TAL+ + DG L S EG +
Sbjct: 292 WTKQALVSISANGFINFVNPELGSID-QVRYGHNKAITALSSSADGKTLFSADAEGHINS 350
Query: 236 WKLT 239
W ++
Sbjct: 351 WDIS 354
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 82/217 (37%), Gaps = 14/217 (6%)
Query: 208 HNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKE 267
H+ T + G SG G VRIW T+ + L+ + + V I S+SK
Sbjct: 58 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 117
Query: 268 AMSASTD----GTCVLWDLIKSTRXXXXXXXXXXXXAAYHPSE-VQLITCSTNKMIDYWE 322
+ G L+D ++ + PS ++I+ S + + +E
Sbjct: 118 IAAVGEGRERFGHVFLFD-TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE 176
Query: 323 TCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFV-------G 375
+S G V+ V + DG F + G D + ++ +G V
Sbjct: 177 GPPFKF-KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN 235
Query: 376 IGHAASITKIKISPDKKVIVSVSADGGIFLWTFPELE 412
+ H+ S+ + SPD I S SAD I +W L+
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 272
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 87/217 (40%), Gaps = 16/217 (7%)
Query: 181 ILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTR 240
I+SG +D + F K K H + V ++ DG+ S GG+G + ++
Sbjct: 163 IISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221
Query: 241 -------ESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDL--IKSTRXXXX 291
E SL+ V H+ SV + D + SAS D T +W++ +K +
Sbjct: 222 GTKTGVFEDDSLKNV--AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV 279
Query: 292 XXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKY 351
++ L++ S N I++ GSI + G + A+ + DGK
Sbjct: 280 GTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHN-KAITALSSSADGKT 338
Query: 352 FLTGGADQIVKMWMYREGVP--CFVGIGHAASITKIK 386
+ A+ + W G+ F + HA IT IK
Sbjct: 339 LFSADAEGHINSWDISTGISNRVFPDV-HATMITGIK 374
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 10/192 (5%)
Query: 223 RLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDL 282
R++SG + V I++ + EHT V ++ D S DGT VL++
Sbjct: 162 RIISGSDDNTVAIFE--GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 219
Query: 283 IKSTRXXXXXXXXXXXXA--------AYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEG 334
+ T+ A + P ++ + S +K I W + +++
Sbjct: 220 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV 279
Query: 335 SDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVI 394
+ + + ++ A+ + G V GH +IT + S D K +
Sbjct: 280 GTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTL 339
Query: 395 VSVSADGGIFLW 406
S A+G I W
Sbjct: 340 FSADAEGHINSW 351
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 44/121 (36%), Gaps = 14/121 (11%)
Query: 303 HPSEVQLITCSTN-----------KMIDYWETCDGSIIRSLEGS-DVAAVNCVDFVDDGK 350
HP+E+ + S N K+I Y + + + + A V CV + D
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 549
Query: 351 YFLTGGADQIVKMWMYREGV--PCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLWTF 408
TG D V +W + P + HA S I ++ IVS D I W
Sbjct: 550 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 609
Query: 409 P 409
P
Sbjct: 610 P 610
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 31/195 (15%)
Query: 212 VTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSA 271
VT LA + DG +++G G++R+W T +L VL H + + ++ D +S
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWNKT---GALLNVLNFHRAPIVSVKWNKDGTHIISM 167
Query: 272 STDGTCVLWDLIKSTRXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRS 331
+ +LW++I T + + ET SI
Sbjct: 168 DVENVTILWNVISGT---------------------------VMQHFELKETGGSSINAE 200
Query: 332 LEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDK 391
D + V++VDD K+ + G I ++ E P IGH I+ ++ +
Sbjct: 201 NHSGDGSLGVDVEWVDDDKFVIPGPKGAIF-VYQITEKTPTGKLIGHHGPISVLEFNDTN 259
Query: 392 KVIVSVSADGGIFLW 406
K+++S S DG + +W
Sbjct: 260 KLLLSASDDGTLRIW 274
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 93/242 (38%), Gaps = 37/242 (15%)
Query: 171 CIVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGE 230
C+ +++DG +I++G +G +R + L + N H + ++ +DGT ++S E
Sbjct: 113 CLAWSHDGNSIVTGVENGELRLWNKTGALLNVL--NFHRAPIVSVKWNKDGTHIISMDVE 170
Query: 231 GQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXX 290
+W + + LKE S S A + S DG+ + D+
Sbjct: 171 NVTILWNVISGTVMQHFELKETGGS---------SINAENHSGDGSLGV-DVEWVDDDKF 220
Query: 291 XXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGK 350
Y +E T K+I + ++ ++F D K
Sbjct: 221 VIPGPKGAIFVYQITE----KTPTGKLIGH----------------HGPISVLEFNDTNK 260
Query: 351 YFLTGGADQIVKMWMYREG--VPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLWTF 408
L+ D +++W G CF GH+ SI D KVI S S DG + LW+
Sbjct: 261 LLLSASDDGTLRIWHGGNGNSQNCFY--GHSQSIVSASWVGDDKVI-SCSMDGSVRLWSL 317
Query: 409 PE 410
+
Sbjct: 318 KQ 319
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 95/245 (38%), Gaps = 50/245 (20%)
Query: 166 NMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTAL----AITQDG 221
N + AC FT IL+ DG + +SG+L + + H G L A ++ G
Sbjct: 155 NYLSAC-SFTNSDMQILTASGDGTCALWDVESGQL---LQSFHGHGADVLCLDLAPSETG 210
Query: 222 TRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWD 281
+SGG + + +W + R Q +Q + H S V+ ++ S S D TC L+D
Sbjct: 211 NTFVSGGCDKKAMVWDM-RSGQCVQ-AFETHESDVNSVRYYPSGDAFASGSDDATCRLYD 268
Query: 282 LIKSTRXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVN 341
L ++ R EV + + + S + +
Sbjct: 269 L-RADR------------------EVAIYS---------------------KESIIFGAS 288
Query: 342 CVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADG 401
VDF G+ G D + +W +G + GH ++ +++SPD S S D
Sbjct: 289 SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH 348
Query: 402 GIFLW 406
+ +W
Sbjct: 349 TLRVW 353
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 4/152 (2%)
Query: 87 LQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFATCSKN 146
L + N G + + + DM SG + T H S + +++ + + +
Sbjct: 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET-HESDVNSVRYYPSGDAFASGSDDA 262
Query: 147 DIRIWSVRTLNELLRISVMNMI--CACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKFII 204
R++ +R E+ S ++I + + F+ G+ + +G+ND I + G I+
Sbjct: 263 TCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL 322
Query: 205 PNAHNRGVTALAITQDGTRLLSGGGEGQVRIW 236
NR V+ L ++ DGT SG + +R+W
Sbjct: 323 FGHENR-VSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 41/210 (19%), Positives = 70/210 (33%), Gaps = 52/210 (24%)
Query: 248 VLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXXXXXA-AYHP-- 304
LK H + V + D + +S+S DG ++WD + + A AY P
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG 118
Query: 305 ----------------------------------------------SEVQLITCSTNKMI 318
S++Q++T S +
Sbjct: 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTC 178
Query: 319 DYWETCDGSIIRSLEGSDVAAVNCVDFV--DDGKYFLTGGADQIVKMWMYREGVPCFVGI 376
W+ G +++S G A V C+D + G F++GG D+ +W R G
Sbjct: 179 ALWDVESGQLLQSFHGHG-ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE 237
Query: 377 GHAASITKIKISPDKKVIVSVSADGGIFLW 406
H + + ++ P S S D L+
Sbjct: 238 THESDVNSVRYYPSGDAFASGSDDATCRLY 267
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 99/271 (36%), Gaps = 46/271 (16%)
Query: 139 VFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSG 198
V T + IW+ T E+ I V F I+ G +D IR F +G
Sbjct: 28 VLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87
Query: 199 KLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSV 258
+ K + AH + ++A+ +LSG + V++W + +L+ + H V
Sbjct: 88 E-KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW-ENNWALEQTFEGHEHFVMC 145
Query: 259 IQIK-SDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXXXXXAAYHPSEVQLITCSTNKM 317
+ D S D T +W L +ST P+ T +T +
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSLGQST-----------------PN----FTLTTGQE 184
Query: 318 IDYWETCDGSIIRSLEGSDVAAVNCVDF--VDDGKYFLTGGADQIVKMWMYREGVPCFVG 375
VN VD+ + D Y +T D +K+W Y+
Sbjct: 185 --------------------RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Query: 376 IGHAASITKIKISPDKKVIVSVSADGGIFLW 406
GH ++++ P +I+S S DG + +W
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 302 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 361
+HP+E ++T + ++ W +RS++ ++ V F+ + + G D +
Sbjct: 21 FHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETP-VRAGKFIARKNWIIVGSDDFRI 79
Query: 362 KMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLWTF 408
+++ Y G H I I + P K ++S S D + LW +
Sbjct: 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 5/114 (4%)
Query: 171 CIVFT-YDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAI--TQDGTRLLSG 227
C+ F D SG D ++ ++ F + RGV + D +++
Sbjct: 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204
Query: 228 GGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWD 281
+ ++IW +++S L+ H S+VS +S S DGT +W+
Sbjct: 205 SDDLTIKIWDY--QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 99/271 (36%), Gaps = 46/271 (16%)
Query: 139 VFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSG 198
V T + +W+ T E+ I V F I+ G +D IR F +G
Sbjct: 28 VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87
Query: 199 KLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSV 258
+ K + AH + ++A+ +LSG + V++W + +L+ + H V
Sbjct: 88 E-KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW-ENNWALEQTFEGHEHFVMC 145
Query: 259 IQIK-SDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXXXXXAAYHPSEVQLITCSTNKM 317
+ D S D T +W L +ST P+ T +T +
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSLGQST-----------------PN----FTLTTGQE 184
Query: 318 IDYWETCDGSIIRSLEGSDVAAVNCVDF--VDDGKYFLTGGADQIVKMWMYREGVPCFVG 375
VN VD+ + D Y +T D +K+W Y+
Sbjct: 185 --------------------RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Query: 376 IGHAASITKIKISPDKKVIVSVSADGGIFLW 406
GH ++++ P +I+S S DG + +W
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 302 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 361
+HP+E ++T + ++ W +RS++ ++ V F+ + + G D +
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTE-TPVRAGKFIARKNWIIVGSDDFRI 79
Query: 362 KMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLWTF 408
+++ Y G H I I + P K ++S S D + LW +
Sbjct: 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 5/114 (4%)
Query: 171 CIVFT-YDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAI--TQDGTRLLSG 227
C+ F D SG D ++ ++ F + RGV + D +++
Sbjct: 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204
Query: 228 GGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWD 281
+ ++IW +++S L+ H S+VS +S S DGT +W+
Sbjct: 205 SDDLTIKIWDY--QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 95/271 (35%), Gaps = 46/271 (16%)
Query: 139 VFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSG 198
V T + +W+ T E+ I V F I+ G +D IR F +G
Sbjct: 28 VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87
Query: 199 KLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSV 258
+ K + AH + ++A+ +LSG + V++W + +L+ + H V
Sbjct: 88 E-KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW-ENNWALEQTFEGHEHFVMC 145
Query: 259 IQIK-SDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXXXXXAAYHPSEVQLITCSTNKM 317
+ D S D T +W L +ST
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF---------------------------- 177
Query: 318 IDYWETCDGSIIRSLEGSDVAAVNCVDF--VDDGKYFLTGGADQIVKMWMYREGVPCFVG 375
+L VN VD+ + D Y +T D +K+W Y+
Sbjct: 178 -------------TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Query: 376 IGHAASITKIKISPDKKVIVSVSADGGIFLW 406
GH ++++ P +I+S S DG + +W
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 302 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 361
+HP+E ++T + ++ W +RS++ ++ V F+ + + G D +
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTE-TPVRAGKFIARKNWIIVGSDDFRI 79
Query: 362 KMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLWTF 408
+++ Y G H I I + P K ++S S D + LW +
Sbjct: 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 5/114 (4%)
Query: 171 CIVFT-YDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAI--TQDGTRLLSG 227
C+ F D SG D ++ ++ F + RGV + D +++
Sbjct: 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204
Query: 228 GGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWD 281
+ ++IW +++S L+ H S+VS +S S DGT +W+
Sbjct: 205 SDDLTIKIWDY--QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 95/271 (35%), Gaps = 46/271 (16%)
Query: 139 VFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSG 198
V T + +W+ T E+ I V F I+ G +D IR F +G
Sbjct: 28 VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87
Query: 199 KLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSV 258
+ K + AH + ++A+ +LSG + V++W + +L+ + H V
Sbjct: 88 E-KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW-ENNWALEQTFEGHEHFVMC 145
Query: 259 IQIK-SDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXXXXXAAYHPSEVQLITCSTNKM 317
+ D S D T +W L +ST
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF---------------------------- 177
Query: 318 IDYWETCDGSIIRSLEGSDVAAVNCVDF--VDDGKYFLTGGADQIVKMWMYREGVPCFVG 375
+L VN VD+ + D Y +T D +K+W Y+
Sbjct: 178 -------------TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Query: 376 IGHAASITKIKISPDKKVIVSVSADGGIFLW 406
GH ++++ P +I+S S DG + +W
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 302 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 361
+HP+E ++T + ++ W +RS++ ++ V F+ + + G D +
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTE-TPVRAGKFIARKNWIIVGSDDFRI 79
Query: 362 KMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLWTF 408
+++ Y G H I I + P K ++S S D + LW +
Sbjct: 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 5/114 (4%)
Query: 171 CIVFT-YDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAI--TQDGTRLLSG 227
C+ F D SG D ++ ++ F + RGV + D +++
Sbjct: 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204
Query: 228 GGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWD 281
+ ++IW +++S L+ H S+VS +S S DGT +W+
Sbjct: 205 SDDLTIKIWDY--QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 81/213 (38%), Gaps = 12/213 (5%)
Query: 204 IPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKE-HTSSVSVIQIK 262
+P + LA GT L S GG+ ++RIW +S + VL E H +V +
Sbjct: 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS 70
Query: 263 SDSKEAMSASTDGTCVLWDLIK---STRXXXXXXXXXXXXAAYHPSEVQLITCSTNKMID 319
SAS D T +W + A+ PS L TCS +K +
Sbjct: 71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVW 130
Query: 320 YWETCDGSIIR--SLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYRE----GVPCF 373
WE + S+ S V V + + + D VK +YRE V C
Sbjct: 131 VWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVK--LYREEEDDWVCCA 188
Query: 374 VGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
GH +++ + P + + S S D + +W
Sbjct: 189 TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 40/204 (19%), Positives = 77/204 (37%), Gaps = 14/204 (6%)
Query: 201 KFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQ 260
K ++ H R V +A + G L S + IWK ++ L+ H + V +
Sbjct: 53 KSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVA 112
Query: 261 IKSDSKEAMSASTDGTCVLWDLIKSTR----XXXXXXXXXXXXAAYHPSEVQLITCSTNK 316
+ S D + +W++ + +HPS+ L + S +
Sbjct: 113 WAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD 172
Query: 317 MIDYW--ETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFV 374
+ + E D +LEG + + V + F G+ + D+ V++W R+ +P
Sbjct: 173 TVKLYREEEDDWVCCATLEGHE-STVWSLAFDPSGQRLASCSDDRTVRIW--RQYLP--- 226
Query: 375 GIGHAASITKIKISPDKKVIVSVS 398
G+ + P K I ++S
Sbjct: 227 --GNEQGVACSGSDPSWKCICTLS 248
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 301 AYHPSEVQLITCSTNKMIDYWET-CDGSIIRS-LEGSDVAAVNCVDFVDDGKYFLTGGAD 358
A++P+ L +C ++ I W T D I +S L V V + G Y + D
Sbjct: 23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82
Query: 359 QIVKMWMY-REGVPCFVGI-GHAASITKIKISPDKKVIVSVSADGGIFLWTFPELED 413
+W ++ C + GH + + +P ++ + S D +++W E ++
Sbjct: 83 ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 11/181 (6%)
Query: 234 RIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXX 293
RI TR + L+ H + + + +DS+ +SAS DG ++WD + +
Sbjct: 42 RIQMRTRRT------LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL 95
Query: 294 XXX-XXXAAYHPSEVQLITCSTNKMIDYW--ETCDGSIIRSLE-GSDVAAVNCVDFVDDG 349
AY PS + + + + +T +G++ S E ++C F+DD
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 350 KYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLWTFP 409
+ +T D +W G GH + + ++PD ++ VS + D LW
Sbjct: 156 Q-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 410 E 410
E
Sbjct: 215 E 215
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 8/158 (5%)
Query: 84 ISSLQYNPVNNKVFV-GTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
+ SL P + ++FV G + L D+ G T H S I + F N + FAT
Sbjct: 187 VMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTF-TGHESDINAICFFPN-GNAFAT 243
Query: 143 CSKNDI-RIWSVRTLNELLRISVMNMICA--CIVFTYDGKAILSGWNDGFIRCFTPQSGK 199
S + R++ +R EL+ S N+IC + F+ G+ +L+G++D +
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 200 LKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWK 237
++ NR V+ L +T DG + +G + ++IW
Sbjct: 304 RAGVLAGHDNR-VSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/288 (16%), Positives = 104/288 (36%), Gaps = 6/288 (2%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H + IY + + + + + + IW T N++ I + + + G +
Sbjct: 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 183 SGWNDGF--IRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTR 240
G D I + G ++ A + G + D ++++ G+ +W +
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI-- 171
Query: 241 ESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKST-RXXXXXXXXXXXX 299
E+ HT V + + D++ +S + D + LWD+ + R
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA 231
Query: 300 AAYHPSEVQLITCSTNKMIDYWE-TCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGAD 358
+ P+ T S + ++ D ++ + + + V F G+ L G D
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Query: 359 QIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+W + V GH ++ + ++ D + + S D + +W
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 11/181 (6%)
Query: 234 RIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXX 293
RI TR + L+ H + + + +DS+ +SAS DG ++WD + +
Sbjct: 42 RIQMRTRRT------LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL 95
Query: 294 XXX-XXXAAYHPSEVQLITCSTNKMIDYW--ETCDGSIIRSLE-GSDVAAVNCVDFVDDG 349
AY PS + + + + +T +G++ S E ++C F+DD
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 350 KYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLWTFP 409
+ +T D +W G GH + + ++PD ++ VS + D LW
Sbjct: 156 Q-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 410 E 410
E
Sbjct: 215 E 215
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 8/158 (5%)
Query: 84 ISSLQYNPVNNKVFV-GTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
+ SL P + ++FV G + L D+ G T H S I + F N + FAT
Sbjct: 187 VMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTF-TGHESDINAICFFPN-GNAFAT 243
Query: 143 CSKNDI-RIWSVRTLNELLRISVMNMICA--CIVFTYDGKAILSGWNDGFIRCFTPQSGK 199
S + R++ +R EL+ S N+IC + F+ G+ +L+G++D +
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 200 LKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWK 237
++ NR V+ L +T DG + +G + ++IW
Sbjct: 304 RAGVLAGHDNR-VSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/288 (16%), Positives = 104/288 (36%), Gaps = 6/288 (2%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H + IY + + + + + + IW T N++ I + + + G +
Sbjct: 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 183 SGWNDGF--IRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTR 240
G D I + G ++ A + G + D ++++ G+ +W +
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI-- 171
Query: 241 ESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKST-RXXXXXXXXXXXX 299
E+ HT V + + D++ +S + D + LWD+ + R
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA 231
Query: 300 AAYHPSEVQLITCSTNKMIDYWE-TCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGAD 358
+ P+ T S + ++ D ++ + + + V F G+ L G D
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Query: 359 QIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+W + V GH ++ + ++ D + + S D + +W
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 100/234 (42%), Gaps = 22/234 (9%)
Query: 181 ILSGWNDGFIRCFTP----QSGKLKF--IIPNAHNRGVTALAITQDGTRLLSGGGEGQVR 234
I S W +IR + G+LK ++ + +T L G R++SG + ++
Sbjct: 85 IHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLK 142
Query: 235 IWKLTRESQSLQCV--LKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXX 292
+W + + +C+ L HT V Q++ + +S STD T +W+ ++
Sbjct: 143 VW----SAVTGKCLRTLVGHTGGVWSSQMRDNI--IISGSTDRTLKVWN-AETGECIHTL 195
Query: 293 XXXXXXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYF 352
H E ++++ S + + W+ G + L G VAAV CV + DG+
Sbjct: 196 YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH-VAAVRCVQY--DGRRV 252
Query: 353 LTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
++G D +VK+W GH + ++ D +VS S D I +W
Sbjct: 253 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVW 304
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 93/213 (43%), Gaps = 15/213 (7%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
HTS + + + V + +R+W + T + L + +M + A YDG+ ++
Sbjct: 198 HTSTVRCMHL--HEKRVVSGSRDATLRVWDIET-GQCLHV-LMGHVAAVRCVQYDGRRVV 253
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRES 242
SG D ++ + P++ + NR ++ DG ++SG + +R+W + E+
Sbjct: 254 SGAYDFMVKVWDPETETCLHTLQGHTNR---VYSLQFDGIHVVSGSLDTSIRVWDV--ET 308
Query: 243 QSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXXXXXAAY 302
+ L H S S +++K + +S + D T +WD IK+ + +A
Sbjct: 309 GNCIHTLTGHQSLTSGMELKDNI--LVSGNADSTVKIWD-IKTGQCLQTLQGPNKHQSAV 365
Query: 303 HPSEVQ---LITCSTNKMIDYWETCDGSIIRSL 332
+ +IT S + + W+ G IR+L
Sbjct: 366 TCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 398
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 309 LITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYRE 368
+I+ ST++ + W G I +L G + V C+ + K ++G D +++W
Sbjct: 172 IISGSTDRTLKVWNAETGECIHTLYGH-TSTVRCMHLHE--KRVVSGSRDATLRVWDIET 228
Query: 369 GVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLWTFPELE 412
G V +GH A++ ++ D + +VS + D + +W PE E
Sbjct: 229 GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWD-PETE 269
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 11/181 (6%)
Query: 234 RIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXX 293
RI TR + L+ H + + + +DS+ +SAS DG ++WD + +
Sbjct: 53 RIQMRTRRT------LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL 106
Query: 294 XXX-XXXAAYHPSEVQLITCSTNKMIDYW--ETCDGSIIRSLE-GSDVAAVNCVDFVDDG 349
AY PS + + + + +T +G++ S E ++C F+DD
Sbjct: 107 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 166
Query: 350 KYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLWTFP 409
+ +T D +W G GH + + ++PD ++ VS + D LW
Sbjct: 167 Q-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 225
Query: 410 E 410
E
Sbjct: 226 E 226
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 8/158 (5%)
Query: 84 ISSLQYNPVNNKVFV-GTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
+ SL P + ++FV G + L D+ G T H S I + F N + FAT
Sbjct: 198 VMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTF-TGHESDINAICFFPN-GNAFAT 254
Query: 143 CSKNDI-RIWSVRTLNELLRISVMNMICA--CIVFTYDGKAILSGWNDGFIRCFTPQSGK 199
S + R++ +R EL+ S N+IC + F+ G+ +L+G++D +
Sbjct: 255 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 314
Query: 200 LKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWK 237
++ NR V+ L +T DG + +G + ++IW
Sbjct: 315 RAGVLAGHDNR-VSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/288 (16%), Positives = 104/288 (36%), Gaps = 6/288 (2%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H + IY + + + + + + IW T N++ I + + + G +
Sbjct: 65 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 124
Query: 183 SGWNDGF--IRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTR 240
G D I + G ++ A + G + D ++++ G+ +W +
Sbjct: 125 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI-- 182
Query: 241 ESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKST-RXXXXXXXXXXXX 299
E+ HT V + + D++ +S + D + LWD+ + R
Sbjct: 183 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA 242
Query: 300 AAYHPSEVQLITCSTNKMIDYWE-TCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGAD 358
+ P+ T S + ++ D ++ + + + V F G+ L G D
Sbjct: 243 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 302
Query: 359 QIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+W + V GH ++ + ++ D + + S D + +W
Sbjct: 303 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 11/181 (6%)
Query: 234 RIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXX 293
RI TR + L+ H + + + +DS+ +SAS DG ++WD + +
Sbjct: 42 RIQMRTRRT------LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL 95
Query: 294 XXX-XXXAAYHPSEVQLITCSTNKMIDYW--ETCDGSIIRSLE-GSDVAAVNCVDFVDDG 349
AY PS + + + + +T +G++ S E ++C F+DD
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 350 KYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLWTFP 409
+ +T D +W G GH + + ++PD ++ VS + D LW
Sbjct: 156 Q-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 410 E 410
E
Sbjct: 215 E 215
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 8/158 (5%)
Query: 84 ISSLQYNPVNNKVFV-GTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
+ SL P + ++FV G + L D+ G T H S I + F N + FAT
Sbjct: 187 VMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTF-TGHESDINAICFFPN-GNAFAT 243
Query: 143 CSKNDI-RIWSVRTLNELLRISVMNMICA--CIVFTYDGKAILSGWNDGFIRCFTPQSGK 199
S + R++ +R EL+ S N+IC + F+ G+ +L+G++D +
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 200 LKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWK 237
++ NR V+ L +T DG + +G + ++IW
Sbjct: 304 RAGVLAGHDNR-VSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/288 (16%), Positives = 104/288 (36%), Gaps = 6/288 (2%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H + IY + + + + + + IW T N++ I + + + G +
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 183 SGWNDGF--IRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTR 240
G D I + G ++ A + G + D ++++ G+ +W +
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI-- 171
Query: 241 ESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKST-RXXXXXXXXXXXX 299
E+ HT V + + D++ +S + D + LWD+ + R
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA 231
Query: 300 AAYHPSEVQLITCSTNKMIDYWE-TCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGAD 358
+ P+ T S + ++ D ++ + + + V F G+ L G D
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Query: 359 QIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+W + V GH ++ + ++ D + + S D + +W
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 11/181 (6%)
Query: 234 RIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXX 293
RI TR + L+ H + + + +DS+ +SAS DG ++WD + +
Sbjct: 42 RIQMRTRRT------LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL 95
Query: 294 XXX-XXXAAYHPSEVQLITCSTNKMIDYW--ETCDGSIIRSLE-GSDVAAVNCVDFVDDG 349
AY PS + + + + +T +G++ S E ++C F+DD
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 350 KYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLWTFP 409
+ +T D +W G GH + + ++PD ++ VS + D LW
Sbjct: 156 Q-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 410 E 410
E
Sbjct: 215 E 215
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 8/158 (5%)
Query: 84 ISSLQYNPVNNKVFV-GTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
+ SL P + ++FV G + L D+ G T H S I + F N + FAT
Sbjct: 187 VMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTF-TGHESDINAICFFPN-GNAFAT 243
Query: 143 CSKNDI-RIWSVRTLNELLRISVMNMICA--CIVFTYDGKAILSGWNDGFIRCFTPQSGK 199
S + R++ +R EL+ S N+IC + F+ G+ +L+G++D +
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 200 LKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWK 237
++ NR V+ L +T DG + +G + ++IW
Sbjct: 304 RAGVLAGHDNR-VSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/288 (16%), Positives = 104/288 (36%), Gaps = 6/288 (2%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
H + IY + + + + + + IW T N++ I + + + G +
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 183 SGWNDGF--IRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTR 240
G D I + G ++ A + G + D ++++ G+ +W +
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI-- 171
Query: 241 ESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKST-RXXXXXXXXXXXX 299
E+ HT V + + D++ +S + D + LWD+ + R
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA 231
Query: 300 AAYHPSEVQLITCSTNKMIDYWE-TCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGAD 358
+ P+ T S + ++ D ++ + + + V F G+ L G D
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Query: 359 QIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+W + V GH ++ + ++ D + + S D + +W
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%)
Query: 327 SIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIK 386
++ R ++ + V+ + + F G+ ++ D +K+W ++G IGH A++T I
Sbjct: 126 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIA 185
Query: 387 ISPDKKVIVSVSADGGIFLW 406
I + ++S S DG I LW
Sbjct: 186 IIDRGRNVLSASLDGTIRLW 205
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 200 LKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVI 259
L+ I AH +T L G L+S + Q++IW + S + H ++V+ I
Sbjct: 127 LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI--GHRATVTDI 184
Query: 260 QIKSDSKEAMSASTDGTCVLWD 281
I + +SAS DGT LW+
Sbjct: 185 AIIDRGRNVLSASLDGTIRLWE 206
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 302 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 361
+ PS LI+ S + + W DGS R+L G A V + +D G+ L+ D +
Sbjct: 144 FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHR-ATVTDIAIIDRGRNVLSASLDGTI 202
Query: 362 KMW 364
++W
Sbjct: 203 RLW 205
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 449 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 508
+ PS LI+ S + + W DGS R+L G A V + +D G+ L+ D +
Sbjct: 144 FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHR-ATVTDIAIIDRGRNVLSASLDGTI 202
Query: 509 KI 510
++
Sbjct: 203 RL 204
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 95 KVFVGTVNCEIFLIDMNSGFTLTL-VNTCHTSAIYDLQFPVNFSSVFATCSKNDIRIWSV 153
+ +GT +I ++D N F L ++ H S I L+F + ++ ++ ++IWSV
Sbjct: 108 RFILGTTEGDIKVLDSN--FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 165
Query: 154 RTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIR 191
+ + + I G+ +LS DG IR
Sbjct: 166 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR 203
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 325 DGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITK 384
DGS + L+ +D AV+ + F+ G + +K+ + + H + ITK
Sbjct: 86 DGS--KMLKRADYTAVDTAKL--QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITK 141
Query: 385 IKISPDKKVIVSVSADGGIFLWT 407
+K P + ++S S D + +W+
Sbjct: 142 LKFFPSGEALISSSQDMQLKIWS 164
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%)
Query: 327 SIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIK 386
++ R ++ + V+ + + F G+ ++ D +K+W ++G IGH A++T I
Sbjct: 129 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIA 188
Query: 387 ISPDKKVIVSVSADGGIFLW 406
I + ++S S DG I LW
Sbjct: 189 IIDRGRNVLSASLDGTIRLW 208
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 200 LKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVI 259
L+ I AH +T L G L+S + Q++IW + S + H ++V+ I
Sbjct: 130 LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI--GHRATVTDI 187
Query: 260 QIKSDSKEAMSASTDGTCVLWD 281
I + +SAS DGT LW+
Sbjct: 188 AIIDRGRNVLSASLDGTIRLWE 209
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 302 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 361
+ PS LI+ S + + W DGS R+L G A V + +D G+ L+ D +
Sbjct: 147 FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHR-ATVTDIAIIDRGRNVLSASLDGTI 205
Query: 362 KMW 364
++W
Sbjct: 206 RLW 208
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 449 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIV 508
+ PS LI+ S + + W DGS R+L G A V + +D G+ L+ D +
Sbjct: 147 FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHR-ATVTDIAIIDRGRNVLSASLDGTI 205
Query: 509 KI 510
++
Sbjct: 206 RL 207
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 95 KVFVGTVNCEIFLIDMNSGFTLTL-VNTCHTSAIYDLQFPVNFSSVFATCSKNDIRIWSV 153
+ +GT +I ++D N F L ++ H S I L+F + ++ ++ ++IWSV
Sbjct: 111 RFILGTTEGDIKVLDSN--FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 168
Query: 154 RTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIR 191
+ + + I G+ +LS DG IR
Sbjct: 169 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR 206
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 325 DGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITK 384
DGS + L+ +D AV+ + F+ G + +K+ + + H + ITK
Sbjct: 89 DGS--KMLKRADYTAVDTAKL--QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITK 144
Query: 385 IKISPDKKVIVSVSADGGIFLWT 407
+K P + ++S S D + +W+
Sbjct: 145 LKFFPSGEALISSSQDMQLKIWS 167
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 71/175 (40%), Gaps = 13/175 (7%)
Query: 204 IPNAHNRGVTALAITQ-DGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIK 262
P+ H V +L+I + +SG + VR+W L S++++ H ++ ++
Sbjct: 200 FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR-TYHGHEGDINSVKFF 258
Query: 263 SDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXXX--------XXAAYHPSEVQLITCST 314
D + + S DGTC L+D+ + A+ S L +
Sbjct: 259 PDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS 318
Query: 315 NKMIDYWETCDGSII---RSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMWMY 366
N W+T ++ +L+ S ++C+ DG TG D+ +K+W +
Sbjct: 319 NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 68/180 (37%), Gaps = 23/180 (12%)
Query: 208 HNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQS-----LQCVLKEHTSSVSVIQIK 262
H V A +G + GG + I+ L+ ++ + VL H S Q
Sbjct: 107 HCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYV 166
Query: 263 SDSKEAM-SASTDGTCVLWDLIKSTRXXXXXXXXXXXXAAYHPSEV-----------QLI 310
D + + + S D TCVLWD+ R + H ++V I
Sbjct: 167 PDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF----PSGHTADVLSLSINSLNANMFI 222
Query: 311 TCSTNKMIDYWE-TCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREG 369
+ S + + W+ +R+ G + +N V F DG+ F TG D +++ R G
Sbjct: 223 SGSCDTTVRLWDLRITSRAVRTYHGHE-GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/170 (18%), Positives = 71/170 (41%), Gaps = 21/170 (12%)
Query: 86 SLQYNPVNNKVFV-GTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFATCS 144
SL N +N +F+ G+ + + L D+ H I ++F +
Sbjct: 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD 269
Query: 145 KNDIRIWSVRTLNELLRISVMNM----------ICACIVFTYDGKAILSGWNDGFIRCFT 194
R++ +RT ++L V N I + F+ G+ + +G+++G C+
Sbjct: 270 DGTCRLFDMRTGHQL---QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG--DCYV 324
Query: 195 PQSGKLKFII-----PNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLT 239
+ + ++ N+H ++ L ++ DG+ L +G + ++IW +
Sbjct: 325 WDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 370 VPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
V C GH+ + + +P+K IVS S DG + +W
Sbjct: 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVW 93
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 60/173 (34%), Gaps = 14/173 (8%)
Query: 248 VLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXXXXXAAYHPSEV 307
L+ H+ V + + +SAS DG ++W+ + S +
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 308 QLITC----STNKMIDYWETCDG----SIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQ 359
Q + C S + + D + R L G A +C D +TG DQ
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 360 IVKMWMYREGVPCFV-----GIGHAASITKIKI-SPDKKVIVSVSADGGIFLW 406
+W G + GH A + + I S + + +S S D + LW
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 28/129 (21%)
Query: 309 LITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVD--DGKYFLTGGADQIVKMWMY 366
L++ ST++ + W+ G EG + + V C+D V+ + KY +TG D + +W
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHN-STVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 367 R---------------------EGVPCFVGI--GHAASITKIKISPDKKVIVSVSADGGI 403
E P FVG+ GH AS+ + S ++VS S D +
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTL 292
Query: 404 FLWTFPELE 412
+W +++
Sbjct: 293 IVWDVAQMK 301
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 71/349 (20%), Positives = 137/349 (39%), Gaps = 38/349 (10%)
Query: 82 SGISSLQYNPVNNKVFVGTVNCEIFLID-MNSGFTLTLVNTCHTSAIYDLQFPVNFSSVF 140
S I+ LQ+ +N V G + I + D +N F L L + H ++ L++ + +
Sbjct: 123 SVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQL--SGHDGGVWALKY-AHGGILV 177
Query: 141 ATCSKNDIRIWSVRT--LNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCF----- 193
+ + +R+W ++ + + C IV + K I++G D + +
Sbjct: 178 SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 237
Query: 194 --TPQSGK-----LKFIIP--NAHNRGV------TALAITQDGTRLLSGGGEGQVRIWKL 238
P G+ L F P N + GV + ++ G ++SG + + +W +
Sbjct: 238 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDV 297
Query: 239 TRESQSLQC--VLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXX 296
+ ++C +L HT + + K +SAS D T +WDL ++
Sbjct: 298 AQ----MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL-ENGELMYTLQGHT 352
Query: 297 XXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGG 356
S+ L++ + + I W+ D S S ++++A+ +V D L G
Sbjct: 353 ALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF-YVSDN--ILVSG 409
Query: 357 ADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFL 405
++ ++ R G I A K ++ +V DG FL
Sbjct: 410 SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFL 458
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 28/123 (22%)
Query: 309 LITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVD--DGKYFLTGGADQIVKMWMY 366
L++ ST++ + W+ G EG + + V C+D V+ + KY +TG D + +W
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHN-STVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 367 R---------------------EGVPCFVGI--GHAASITKIKISPDKKVIVSVSADGGI 403
E P FVG+ GH AS+ + S ++VS S D +
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV--SGHGNIVVSGSYDNTL 292
Query: 404 FLW 406
+W
Sbjct: 293 IVW 295
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 72/349 (20%), Positives = 137/349 (39%), Gaps = 38/349 (10%)
Query: 82 SGISSLQYNPVNNKVFVGTVNCEIFLID-MNSGFTLTLVNTCHTSAIYDLQFPVNFSSVF 140
S I+ LQ+ +N V G + I + D +N F L L + H ++ L++ + +
Sbjct: 123 SVITCLQFE--DNYVITGADDKXIRVYDSINKKFLLQL--SGHDGGVWALKY-AHGGILV 177
Query: 141 ATCSKNDIRIWSVRT--LNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCF----- 193
+ + +R+W ++ + + C IV + K I++G D + +
Sbjct: 178 SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 237
Query: 194 --TPQSGK-----LKFIIP--NAHNRGV------TALAITQDGTRLLSGGGEGQVRIWKL 238
P G+ L F P N + GV + ++ G ++SG + + +W +
Sbjct: 238 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDV 297
Query: 239 TRESQSLQC--VLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXX 296
+ +C +L HT + + K +SAS D T +WDL ++
Sbjct: 298 AQX----KCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL-ENGELXYTLQGHT 352
Query: 297 XXXAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGG 356
S+ L++ + + I W+ D S S ++++A+ +V D L G
Sbjct: 353 ALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF-YVSDN--ILVSG 409
Query: 357 ADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFL 405
++ ++ R G I A K ++ +V DG FL
Sbjct: 410 SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFL 458
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 90/233 (38%), Gaps = 28/233 (12%)
Query: 203 IIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIK 262
+I NAHN + + G RL + + ++I+++ E+ L L H V +
Sbjct: 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 62
Query: 263 SDSKEAM--SASTDGTCVLWDLIK---STRXXXXXXXXXXXXAAYHPSE---VQLITCST 314
+ S S DG ++W S + P E + L+ S
Sbjct: 63 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
Query: 315 NKM--IDYWETCDGSII---RSLEGSDVAAVNCVDFVDDGKY--------FLTGGADQIV 361
K+ +++ E S I G + A+ +DG++ F+TGGAD +V
Sbjct: 123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182
Query: 362 KMWMYREGVPCFV----GIGHAASITKIKISPD---KKVIVSVSADGGIFLWT 407
K+W Y +V GH+ + + SP + + SVS D +WT
Sbjct: 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 35/199 (17%)
Query: 113 GFTLTLVNTC--HTSAIY--DLQFPVNFSSVFATCS--------KNDIRIWSVRTLNELL 160
G T L++T H ++ D P F ++ A+CS K + WS ++ +
Sbjct: 40 GETHKLIDTLTGHEGPVWRVDWAHP-KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH 98
Query: 161 RISVMNMICACIVFTYDGKAILSGWNDGFIRCFT-PQSGKLKFIIPNAHNRGVTALA--- 216
SV ++ A + G +L +DG + ++G II +AH GV + +
Sbjct: 99 SASVNSVQWAPHEY---GPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155
Query: 217 --ITQDGT--------RLLSGGGEGQVRIWKLTRESQS--LQCVLKEHTSSVSVIQIKSD 264
I +DG + ++GG + V+IWK ++Q+ L+ L+ H+ V +
Sbjct: 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215
Query: 265 ---SKEAMSASTDGTCVLW 280
S S D TC++W
Sbjct: 216 VLLRSYLASVSQDRTCIIW 234
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Query: 208 HNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKE---HTSSVS-VIQIKS 263
H+ V L++ DGT+ +SGG + V++W L++ + VLK H+S V+ V
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ-----KAVLKSYNAHSSEVNCVAACPG 192
Query: 264 DSKEAMSASTDGTCVLWDLIK---STRXXXXXXXXXXXXAAYHPSEVQLITC 312
+S DG +LWD K +TR +HP + C
Sbjct: 193 KDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFAC 244
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 305 SEVQLITCSTNKMIDYWETCDGSII-----RSLEGSDVAAVNCVDFVDDGKYFLTGGADQ 359
SE ++ S + ++ WE + + E D+ V + DG ++GG D
Sbjct: 104 SEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDI--VKTLSVFSDGTQAVSGGKDF 161
Query: 360 IVKMWMYREGVPCFVGIGHAASITKIKISPDKKVI-VSVSADGGIFLW 406
VK+W + H++ + + P K I +S DG I LW
Sbjct: 162 SVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 211 GVTALA-ITQDGTRLLSGGGEGQVRIWK-LTRESQSLQCVLK-EHTSSVSVIQIKSDSKE 267
GVT +A +++ G +L G V +W+ L +ES + K EH V + + SD +
Sbjct: 96 GVTDVAWVSEKG--ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQ 153
Query: 268 AMSASTDGTCVLWDLIKST--RXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWET 323
A+S D + +WDL + + AA + ++C + I W+T
Sbjct: 154 AVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDT 211
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 38/208 (18%)
Query: 104 EIFLIDMNSGFTLTLVNTC--HTSAIY--DLQFPVNFSSVFATCS--------KNDIRIW 151
+IF ++ G T L++T H ++ D P F ++ A+CS K + W
Sbjct: 34 KIFEVE---GETHKLIDTLTGHEGPVWRVDWAHP-KFGTILASCSYDGKVXIWKEENGRW 89
Query: 152 SVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFT-PQSGKLKFIIPNAHNR 210
S ++ + SV ++ A + G +L +DG + ++G II +AH
Sbjct: 90 SQIAVHAVHSASVNSVQWAPHEY---GPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146
Query: 211 GVTALA-----ITQDGT--------RLLSGGGEGQVRIWKLTRESQS--LQCVLKEHTSS 255
GV + + I +DG + ++GG + V+IWK ++Q+ L+ L+ H+
Sbjct: 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 206
Query: 256 VSVIQIKSD---SKEAMSASTDGTCVLW 280
V + S S D TC++W
Sbjct: 207 VRDVAWSPTVLLRSYXASVSQDRTCIIW 234
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 348 DGKYFLTGGADQIVKMWMYREGVPCFV----GIGHAASITKIKISPD---KKVIVSVSAD 400
+ + F+TGGAD +VK+W Y +V GH+ + + SP + SVS D
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQD 228
Query: 401 GGIFLWT 407
+WT
Sbjct: 229 RTCIIWT 235
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 325 DGSIIRSLEGSDVAAVNCVDFVDDGKYFL-TGGADQIVKMWMYREG-VPCFVGIGHAASI 382
+ S I SL G D ++CVD + ++ + TGG D ++ +W R+G +P + H A +
Sbjct: 225 EPSQILSLTG-DRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEM 283
Query: 383 TKIKISP-DKKVIVSVSADGGIFLW 406
++ P + + + + S DG ++ W
Sbjct: 284 WEVHFHPSNPEHLFTCSEDGSLWHW 308
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/246 (19%), Positives = 96/246 (39%), Gaps = 14/246 (5%)
Query: 169 CACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGG 228
A + +++DG + G +G + + +S + K H V L+ + +LS G
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVES-QTKLRTMAGHQARVGCLSWNR---HVLSSG 192
Query: 229 GEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKS-TR 287
R + L+ H+S V + +SD + S D +WD S +
Sbjct: 193 SRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPK 252
Query: 288 XXXXXXXXXXXXAAYHPSEVQLITC---STNKMIDYWETCDGSIIRSLEGSDVAAVNCVD 344
A+ P + L+ + +K I +W G+ + +++ + V +
Sbjct: 253 FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG--SQVTSLI 310
Query: 345 FVDDGKYFLT--GGADQIVKMWMY-REGVPCFVGI-GHAASITKIKISPDKKVIVSVSAD 400
+ K ++ G D + +W Y G+ V I H + +SPD +++ + ++D
Sbjct: 311 WSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASD 370
Query: 401 GGIFLW 406
+ W
Sbjct: 371 ENLKFW 376
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/297 (16%), Positives = 109/297 (36%), Gaps = 14/297 (4%)
Query: 80 DDSGISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSV 139
DD ++ L ++ +N V + +++ + +SG L T ++ + +++ + S +
Sbjct: 92 DDYYLNLLDWSNLN--VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFL 149
Query: 140 FATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGK 199
+ I+ V + +L ++ C+ +++ + SG G I +
Sbjct: 150 SVGLGNGLVDIYDVESQTKLRTMAGHQARVGCL--SWNRHVLSSGSRSGAIHHHDVRIAN 207
Query: 200 LKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVI 259
+ H+ V LA DG +L SGG + V+IW S + H ++V +
Sbjct: 208 HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDA--RSSIPKFTKTNHNAAVKAV 265
Query: 260 ---QIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXXXXXAAYHPSEVQLITCS--T 314
+S+ + D W+ R + P ++++
Sbjct: 266 AWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFP 325
Query: 315 NKMIDYWETCDGSIIRSLE--GSDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREG 369
+ + W + + ++ D + DG+ T +D+ +K W +G
Sbjct: 326 DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSA-LSPDGRILSTAASDENLKFWRVYDG 381
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 74/191 (38%), Gaps = 18/191 (9%)
Query: 84 ISSLQYNPVN-NKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
I+ L++NP+N N+ + ++ L D G L + + T I+ V+ SS
Sbjct: 167 ITGLKFNPLNTNQFYASSMEGTTRLQDFK-GNILRVFASSDTINIWFCSLDVSASSRMVV 225
Query: 143 CSKN----------DIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRC 192
N +W++R + + +N C + T + W+ +R
Sbjct: 226 TGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR- 284
Query: 193 FTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEH 252
GK F+ H V A + DG RLL+ + ++R++ ++ L + H
Sbjct: 285 -----GKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH 339
Query: 253 TSSVSVIQIKS 263
+ IK+
Sbjct: 340 RHFQHLTPIKA 350
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 74/191 (38%), Gaps = 18/191 (9%)
Query: 84 ISSLQYNPVN-NKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
I+ L++NP+N N+ + ++ L D G L + + T I+ V+ SS
Sbjct: 167 ITGLKFNPLNTNQFYASSMEGTTRLQDFK-GNILRVFASSDTINIWFCSLDVSASSRMVV 225
Query: 143 CSKN----------DIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRC 192
N +W++R + + +N C + T + W+ +R
Sbjct: 226 TGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR- 284
Query: 193 FTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEH 252
GK F+ H V A + DG RLL+ + ++R++ ++ L + H
Sbjct: 285 -----GKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH 339
Query: 253 TSSVSVIQIKS 263
+ IK+
Sbjct: 340 RHFQHLTPIKA 350
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 90/233 (38%), Gaps = 28/233 (12%)
Query: 203 IIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIK 262
+I NAHN + + G RL + + ++I+++ E+ L L H V +
Sbjct: 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 64
Query: 263 SDSKEAM--SASTDGTCVLWDLIK---STRXXXXXXXXXXXXAAYHPSE---VQLITCST 314
+ S S DG ++W S + P E + L+ S
Sbjct: 65 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124
Query: 315 NKM--IDYWETCDGSII---RSLEGSDVAAVNCVDFVDDGKY--------FLTGGADQIV 361
K+ +++ E S I G + A+ +DG++ F+TGGAD +V
Sbjct: 125 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 184
Query: 362 KMWMYREGVPCFV----GIGHAASITKIKISPD---KKVIVSVSADGGIFLWT 407
K+W Y +V GH+ + + SP + + SVS D +WT
Sbjct: 185 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 38/208 (18%)
Query: 104 EIFLIDMNSGFTLTLVNTC--HTSAIY--DLQFPVNFSSVFATCS--------KNDIRIW 151
+IF ++ G T L++T H ++ D P F ++ A+CS K + W
Sbjct: 36 KIFEVE---GETHKLIDTLTGHEGPVWRVDWAHP-KFGTILASCSYDGKVLIWKEENGRW 91
Query: 152 SVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFT-PQSGKLKFIIPNAHNR 210
S ++ + SV ++ A + G +L +DG + ++G II +AH
Sbjct: 92 SQIAVHAVHSASVNSVQWAPHEY---GPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 148
Query: 211 GVTALA-----ITQDGT--------RLLSGGGEGQVRIWKLTRESQS--LQCVLKEHTSS 255
GV + + I +DG + ++GG + V+IWK ++Q+ L+ L+ H+
Sbjct: 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 208
Query: 256 VSVIQIKSD---SKEAMSASTDGTCVLW 280
V + S S D TC++W
Sbjct: 209 VRDVAWSPTVLLRSYLASVSQDRTCIIW 236
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 38/208 (18%)
Query: 104 EIFLIDMNSGFTLTLVNTC--HTSAIY--DLQFPVNFSSVFATCS--------KNDIRIW 151
+IF ++ G T L++T H ++ D P F ++ A+CS K + W
Sbjct: 34 KIFEVE---GETHKLIDTLTGHEGPVWRVDWAHP-KFGTILASCSYDGKVMIWKEENGRW 89
Query: 152 SVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFT-PQSGKLKFIIPNAHNR 210
S ++ + SV ++ A + G +L +DG + ++G II +AH
Sbjct: 90 SQIAVHAVHSASVNSVQWAPHEY---GPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146
Query: 211 GVTALA-----ITQDGT--------RLLSGGGEGQVRIWKLTRESQS--LQCVLKEHTSS 255
GV + + I +DG + ++GG + V+IWK ++Q+ L+ L+ H+
Sbjct: 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 206
Query: 256 VSVIQIKSD---SKEAMSASTDGTCVLW 280
V + S S D TC++W
Sbjct: 207 VRDVAWSPTVLLRSYMASVSQDRTCIIW 234
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 348 DGKYFLTGGADQIVKMWMYREGVPCFV----GIGHAASITKIKISPD---KKVIVSVSAD 400
+ + F+TGGAD +VK+W Y +V GH+ + + SP + + SVS D
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228
Query: 401 GGIFLWT 407
+WT
Sbjct: 229 RTCIIWT 235
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 74/191 (38%), Gaps = 18/191 (9%)
Query: 84 ISSLQYNPVN-NKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
I+ L++NP+N N+ + ++ L D G L + + T I+ V+ SS
Sbjct: 168 ITGLKFNPLNTNQFYASSMEGTTRLQDFK-GNILRVFASSDTINIWFCSLDVSASSRMVV 226
Query: 143 CSKN----------DIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRC 192
N +W++R + + +N C + T + W+ +R
Sbjct: 227 TGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR- 285
Query: 193 FTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEH 252
GK F+ H V A + DG RLL+ + ++R++ ++ L + H
Sbjct: 286 -----GKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH 340
Query: 253 TSSVSVIQIKS 263
+ IK+
Sbjct: 341 RHFQHLTPIKA 351
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 38/208 (18%)
Query: 104 EIFLIDMNSGFTLTLVNTC--HTSAIY--DLQFPVNFSSVFATCS--------KNDIRIW 151
+IF ++ G T L++T H ++ D P F ++ A+CS K + W
Sbjct: 34 KIFEVE---GETHKLIDTLTGHEGPVWRVDWAHP-KFGTILASCSYDGKVLIWKEENGRW 89
Query: 152 SVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFT-PQSGKLKFIIPNAHNR 210
S ++ + SV ++ A + G +L +DG + ++G II +AH
Sbjct: 90 SQIAVHAVHSASVNSVQWAPHEY---GPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146
Query: 211 GVTALA-----ITQDGT--------RLLSGGGEGQVRIWKLTRESQS--LQCVLKEHTSS 255
GV + + I +DG + ++GG + V+IWK ++Q+ L+ L+ H+
Sbjct: 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 206
Query: 256 VSVIQIKSD---SKEAMSASTDGTCVLW 280
V + S S D TC++W
Sbjct: 207 VRDVAWSPTVLLRSYLASVSQDRTCIIW 234
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 90/233 (38%), Gaps = 28/233 (12%)
Query: 203 IIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIK 262
+I NAHN + + G RL + + ++I+++ E+ L L H V +
Sbjct: 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 62
Query: 263 SDSKEAM--SASTDGTCVLWDLIK---STRXXXXXXXXXXXXAAYHPSE---VQLITCST 314
+ S S DG ++W S + P E + L+ S
Sbjct: 63 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
Query: 315 NKM--IDYWETCDGSII---RSLEGSDVAAVNCVDFVDDGKY--------FLTGGADQIV 361
K+ +++ E S I G + A+ +DG++ F+TGGAD +V
Sbjct: 123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182
Query: 362 KMWMYREGVPCFV----GIGHAASITKIKISPD---KKVIVSVSADGGIFLWT 407
K+W Y +V GH+ + + SP + + SVS D +WT
Sbjct: 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 218 TQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTC 277
T G L++G VR W++ Q++ + HT V + D + +AS D T
Sbjct: 51 TLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTA 110
Query: 278 VLWDLIKSTRXXXXXXXXXXXXAAYH----PSEVQLITCSTNKMIDYWET 323
+WDL S+ H P+ ++T S +K + +W+T
Sbjct: 111 KMWDL--SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 32/166 (19%)
Query: 84 ISSLQYNPVNNK---VFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVF 140
+ S +PV+ K V VGT ++ L D+ SG + + + H I + + + +
Sbjct: 144 VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG-SCSHILQGHRQEILAVSWSPRYDYIL 202
Query: 141 ATCSKND-IRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGK 199
AT S + +++W VR + C + ++GK + +S
Sbjct: 203 ATASADSRVKLWDVRRASG----------CLITLDQHNGK-----------KSQAVESAN 241
Query: 200 LKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSL 245
AHN V L T DG LL+ G + ++R+W + +L
Sbjct: 242 ------TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTL 281
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 325 DGSIIRSLEGSDVA---AVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAAS 381
+G +++E ++ A VN + F DG + LT G D +++W G V G +
Sbjct: 230 NGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCN 289
Query: 382 ITK 384
+K
Sbjct: 290 NSK 292
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 14/152 (9%)
Query: 269 MSASTDGTCVLWDL---IKSTRXXXXXXXXXXXXA-----AYHPSEVQLI-TCSTNKMID 319
+SAS D T LWD+ K R A A+H L + + ++ +
Sbjct: 200 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 259
Query: 320 YWETCDGSIIRSLEGSDV--AAVNCVDFVDDGKYFL-TGGADQIVKMWMYRE-GVPCFVG 375
W+T + + + D A VNC+ F ++ L TG AD+ V +W R +
Sbjct: 260 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 319
Query: 376 IGHAASITKIKISPDKKVIVSVSA-DGGIFLW 406
H I +++ SP + I++ S D + +W
Sbjct: 320 ESHKDEIFQVQWSPHNETILASSGTDRRLHVW 351
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 14/152 (9%)
Query: 269 MSASTDGTCVLWDL---IKSTRXXXXXXXXXXXXA-----AYHPSEVQLI-TCSTNKMID 319
+SAS D T LWD+ K R A A+H L + + ++ +
Sbjct: 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 257
Query: 320 YWETCDGSIIRSLEGSDV--AAVNCVDFVDDGKYFL-TGGADQIVKMWMYRE-GVPCFVG 375
W+T + + + D A VNC+ F ++ L TG AD+ V +W R +
Sbjct: 258 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 317
Query: 376 IGHAASITKIKISPDKKVIVSVSA-DGGIFLW 406
H I +++ SP + I++ S D + +W
Sbjct: 318 ESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 340 VNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDK-KVIVSVS 398
V+ V + G ++G D +K+W + V HAA +T + SP K V +S S
Sbjct: 130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCS 189
Query: 399 ADGGIFLW 406
D I LW
Sbjct: 190 EDNRILLW 197
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Query: 217 ITQDGTR-LLSGGGEGQVRIWKLTRESQSL---QCVLKEHTSSVSVIQIKSDSKEAMSAS 272
+T G R +L G V +W+L E+++L + EH VS + + S +A+S S
Sbjct: 88 LTWVGERGILVASDSGAVELWELD-ENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS 146
Query: 273 TDGTCVLWDLIKS---TRXXXXXXXXXXXXAAYHPSEVQLITCSTNKMIDYWET 323
D +WDL + + A+ H V ++CS + I W+T
Sbjct: 147 KDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV-FLSCSEDNRILLWDT 199
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 14/152 (9%)
Query: 269 MSASTDGTCVLWDL---IKSTRXXXXXXXXXXXXA-----AYHPSEVQLI-TCSTNKMID 319
+SAS D T LWD+ K R A A+H L + + ++ +
Sbjct: 202 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 261
Query: 320 YWETCDGSIIRSLEGSDV--AAVNCVDFVDDGKYFL-TGGADQIVKMWMYRE-GVPCFVG 375
W+T + + + D A VNC+ F ++ L TG AD+ V +W R +
Sbjct: 262 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 321
Query: 376 IGHAASITKIKISPDKKVIVSVSA-DGGIFLW 406
H I +++ SP + I++ S D + +W
Sbjct: 322 ESHKDEIFQVQWSPHNETILASSGTDRRLHVW 353
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 14/152 (9%)
Query: 269 MSASTDGTCVLWDL--------IKSTRXXXXXXXXXXXXAAYHPSEVQLI-TCSTNKMID 319
+SAS D T LWD+ I + A+H L + + ++ +
Sbjct: 196 LSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLX 255
Query: 320 YWETCDGSIIRS--LEGSDVAAVNCVDFVDDGKYFL-TGGADQIVKMWMYRE-GVPCFVG 375
W+T + + L + A VNC+ F ++ L TG AD+ V +W R +
Sbjct: 256 IWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF 315
Query: 376 IGHAASITKIKISPDKKVIVSVSA-DGGIFLW 406
H I ++ SP + I++ S D + +W
Sbjct: 316 ESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/294 (17%), Positives = 113/294 (38%), Gaps = 22/294 (7%)
Query: 134 VNFSS--VFATCSKNDIRIWSVRT--LNELLRISVMNMICACIVFTYDGKAILSGWNDGF 189
V++SS V A N + +WS + + +LL++ + + + +G + G +
Sbjct: 31 VDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 90
Query: 190 IRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVL 249
++ + Q K + N + +++ + L SG G + R ++ L
Sbjct: 91 VQLWDVQQQKR---LRNMTSHSARVGSLSWNSYILSSGSRSGHIHH-HDVRVAEHHVATL 146
Query: 250 KEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKS-----TRXXXXXXXXXXXXAAYHP 304
H+ V ++ D + S D +W A+ P
Sbjct: 147 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 206
Query: 305 SEVQLITC---STNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTG---GAD 358
+ ++ ++++ I W C G+ + +++ + V + + K ++G +
Sbjct: 207 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH--SQVCSILWSPHYKELISGHGFAQN 264
Query: 359 QIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLWTFPELE 412
Q+V +W Y GH + + + +SPD + S +AD + LW EL+
Sbjct: 265 QLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 96/250 (38%), Gaps = 61/250 (24%)
Query: 84 ISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQ---FPVNFSSVF 140
ISS+ + N + VGT + E+ L D+ L + T H++ + L + ++ S
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWNSYILSSGSRS 128
Query: 141 ATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFI---------- 190
+D+R+ + + +S + + + DG+ + SG ND +
Sbjct: 129 GHIHHHDVRV----AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 184
Query: 191 -----RCFTPQSGKLKFII--P-------------------------------NAHNRGV 212
+ FT G +K + P +AH++ V
Sbjct: 185 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-V 243
Query: 213 TALAITQDGTRLLSGGG--EGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMS 270
++ + L+SG G + Q+ IWK ++ + LK HTS V + + D S
Sbjct: 244 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE--LKGHTSRVLSLTMSPDGATVAS 301
Query: 271 ASTDGTCVLW 280
A+ D T LW
Sbjct: 302 AAADETLRLW 311
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 121 TCHTSAIYDLQFPVNFSSVFAT---CSKNDIRIWSVRTLNELLRISVMNMICACIVFTYD 177
T H A+ + + S+V AT S IRIW+V + L + + +C+ I+++
Sbjct: 193 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS-ILWSPH 251
Query: 178 GKAILSGWNDGFIR-----CFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQ 232
K ++SG GF + P K+ + H V +L ++ DG + S +
Sbjct: 252 YKELISG--HGFAQNQLVIWKYPTMAKVAEL--KGHTSRVLSLTMSPDGATVASAAADET 307
Query: 233 VRIWK 237
+R+W+
Sbjct: 308 LRLWR 312
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 14/156 (8%)
Query: 265 SKEAMSASTDGTCVLWDL--------IKSTRXXXXXXXXXXXXAAYHPSEVQLI-TCSTN 315
S +SAS D T LWD+ I + A+H L + + +
Sbjct: 192 SGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADD 251
Query: 316 KMIDYWETCDGSIIRS--LEGSDVAAVNCVDFVDDGKYFL-TGGADQIVKMWMYRE-GVP 371
+ + W+T + + L + A VNC+ F ++ L TG AD+ V +W R +
Sbjct: 252 QKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311
Query: 372 CFVGIGHAASITKIKISPDKKVIVSVSA-DGGIFLW 406
H I ++ SP + I++ S D + +W
Sbjct: 312 LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 313 STNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTG---GADQIVKMWMYREG 369
++++ I W C G+ + +++ + V + + K ++G +Q+V +W Y
Sbjct: 298 TSDRHIRIWNVCSGACLSAVDAH--SQVCSILWSPHYKELISGHGFAQNQLV-IWKYPTM 354
Query: 370 VPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLWTFPELE 412
GH + + + +SPD + S +AD + LW EL+
Sbjct: 355 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 96/250 (38%), Gaps = 61/250 (24%)
Query: 84 ISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQ---FPVNFSSVF 140
ISS+ + N + VGT + E+ L D+ L + T H++ + L + ++ S
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWNSYILSSGSRS 208
Query: 141 ATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFI---------- 190
+D+R+ + + +S + + + DG+ + SG ND +
Sbjct: 209 GHIHHHDVRV----AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 264
Query: 191 -----RCFTPQSGKLKFII--P-------------------------------NAHNRGV 212
+ FT G +K + P +AH++ V
Sbjct: 265 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-V 323
Query: 213 TALAITQDGTRLLSGGG--EGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMS 270
++ + L+SG G + Q+ IWK ++ + LK HTS V + + D S
Sbjct: 324 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE--LKGHTSRVLSLTMSPDGATVAS 381
Query: 271 ASTDGTCVLW 280
A+ D T LW
Sbjct: 382 AAADETLRLW 391
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 121 TCHTSAIYDLQFPVNFSSVFAT---CSKNDIRIWSVRTLNELLRISVMNMICACIVFTYD 177
T H A+ + + S+V AT S IRIW+V + L + + +C+ I+++
Sbjct: 273 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS-ILWSPH 331
Query: 178 GKAILSGWNDGFIR-----CFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQ 232
K ++SG GF + P K+ + H V +L ++ DG + S +
Sbjct: 332 YKELISG--HGFAQNQLVIWKYPTMAKVAEL--KGHTSRVLSLTMSPDGATVASAAADET 387
Query: 233 VRIWK 237
+R+W+
Sbjct: 388 LRLWR 392
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 313 STNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTG---GADQIVKMWMYREG 369
++++ I W C G+ + +++ + V + + K ++G +Q+V +W Y
Sbjct: 309 TSDRHIRIWNVCSGACLSAVDAH--SQVCSILWSPHYKELISGHGFAQNQLV-IWKYPTM 365
Query: 370 VPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLWTFPELE 412
GH + + + +SPD + S +AD + LW EL+
Sbjct: 366 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 408
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 96/250 (38%), Gaps = 61/250 (24%)
Query: 84 ISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQ---FPVNFSSVF 140
ISS+ + N + VGT + E+ L D+ L + T H++ + L + ++ S
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWNSYILSSGSRS 219
Query: 141 ATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFI---------- 190
+D+R+ + + +S + + + DG+ + SG ND +
Sbjct: 220 GHIHHHDVRV----AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 275
Query: 191 -----RCFTPQSGKLKFII--P-------------------------------NAHNRGV 212
+ FT G +K + P +AH++ V
Sbjct: 276 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-V 334
Query: 213 TALAITQDGTRLLSGGG--EGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMS 270
++ + L+SG G + Q+ IWK ++ + LK HTS V + + D S
Sbjct: 335 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE--LKGHTSRVLSLTMSPDGATVAS 392
Query: 271 ASTDGTCVLW 280
A+ D T LW
Sbjct: 393 AAADETLRLW 402
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 121 TCHTSAIYDLQFPVNFSSVFAT---CSKNDIRIWSVRTLNELLRISVMNMICACIVFTYD 177
T H A+ + + S+V AT S IRIW+V + L + + +C+ I+++
Sbjct: 284 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS-ILWSPH 342
Query: 178 GKAILSGWNDGFIR-----CFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQ 232
K ++SG GF + P K+ + H V +L ++ DG + S +
Sbjct: 343 YKELISG--HGFAQNQLVIWKYPTMAKVAEL--KGHTSRVLSLTMSPDGATVASAAADET 398
Query: 233 VRIWK 237
+R+W+
Sbjct: 399 LRLWR 403
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 204 IPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQC--VLKEHTSSVSVIQI 261
I H V +A + DG L + + V IW+ + +C VL+EH+ V +
Sbjct: 102 IIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW 161
Query: 262 KSDSKEAMSASTDGTCVLW 280
S+S D T +W
Sbjct: 162 HPSEALLASSSYDDTVRIW 180
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 69/179 (38%), Gaps = 21/179 (11%)
Query: 205 PNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQS-----LQCVLKEHTSSVSVI 259
AH + + ++A + L +G + V IW + L +++ H + V +
Sbjct: 54 ETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGV 113
Query: 260 QIKSDSKEAMSASTDGTCVLWDLIKSTRXXX-----XXXXXXXXXAAYHPSEVQLITCST 314
+D + S D + +W+ +S +HPSE L + S
Sbjct: 114 AWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY 173
Query: 315 NKMIDYWETCDG-----SIIRSLEGSDVAAVNCVDF-VDDGKYFL-TGGADQIVKMWMY 366
+ + W+ D +++ EG+ V DF +G + L +G D V++W Y
Sbjct: 174 DDTVRIWKDYDDDWECVAVLNGHEGT----VWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 79/230 (34%), Gaps = 24/230 (10%)
Query: 196 QSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSS 255
Q +K I H R +T + ++G L S + +W + + L L HT +
Sbjct: 19 QGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVW-YSLNGERL-GTLDGHTGT 76
Query: 256 VSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRXXXXXXXXXXXXAAYHPSEVQLITCSTN 315
+ I + +K ++ S D + LWD+ + P + N
Sbjct: 77 IWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDN 136
Query: 316 KM-----IDYWETCDGSIIRSL--------------EGSDVAAVNCVDFVDDGKYFLTGG 356
M I+ +E S L EG D A V + GKY + G
Sbjct: 137 VMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV--AGWSTKGKYIIAGH 194
Query: 357 ADQIVKMWMYREGVPCFVGIG-HAASITKIKISPDKKVIVSVSADGGIFL 405
D + + I H SI+ ++ SPD ++ S D FL
Sbjct: 195 KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFL 244
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 309 LITCSTNKMIDYWETCDGSIIRSLEGSDVAA--VNCVDFVDDGKYFLTGGADQIVKMWMY 366
+I+ S +K W+ +GS++ +L+ + + V F ++ FLT AD+ +K+W
Sbjct: 117 VISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSEN--KFLTASADKTIKLWQN 172
Query: 367 REGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFL 405
+ + F GI H + + + D I S S DG I L
Sbjct: 173 DKVIKTFSGI-HNDVVRHLAVVDDGHFI-SCSNDGLIKL 209
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 14/152 (9%)
Query: 269 MSASTDGTCVLWDL--------IKSTRXXXXXXXXXXXXAAYHPSEVQLI-TCSTNKMID 319
+SAS D T LWD+ + + ++H L + + ++ +
Sbjct: 194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253
Query: 320 YWETCDGSIIRSLEGSDV--AAVNCVDFVDDGKYFL-TGGADQIVKMWMYRE-GVPCFVG 375
W+T + + D A VNC+ F ++ L TG AD+ V +W R +
Sbjct: 254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313
Query: 376 IGHAASITKIKISPDKKVIVSVSA-DGGIFLW 406
H I +++ SP + I++ S D + +W
Sbjct: 314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVW 345
>pdb|1PV6|A Chain A, Crystal Structure Of Lactose Permease
pdb|1PV6|B Chain B, Crystal Structure Of Lactose Permease
pdb|1PV7|A Chain A, Crystal Structure Of Lactose Permease With Tdg
pdb|1PV7|B Chain B, Crystal Structure Of Lactose Permease With Tdg
pdb|2CFP|A Chain A, Sugar Free Lactose Permease At Acidic Ph
pdb|2CFQ|A Chain A, Sugar Free Lactose Permease At Neutral Ph
Length = 417
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 7/134 (5%)
Query: 39 AVLMGCYGXXXXXXXXXXXXDVNAEDVSLYSAG-----VTALYLLKDDSGISSLQYNPV- 92
A + GC G +N + V +G L+ K D+ S+ N V
Sbjct: 143 ARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG 202
Query: 93 -NNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFATCSKNDIRIW 151
N+ F + E+F +L ++ T ++D QF F+S FAT +
Sbjct: 203 ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFG 262
Query: 152 SVRTLNELLRISVM 165
V T+ ELL S+M
Sbjct: 263 YVTTMGELLNASIM 276
>pdb|2Y5Y|A Chain A, Crystal Structure Of Lacy In Complex With An Affinity
Inactivator
pdb|2Y5Y|B Chain B, Crystal Structure Of Lacy In Complex With An Affinity
Inactivator
Length = 423
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 75 LYLLKDDSGISSLQYNPV--NNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQF 132
L+ K D+ S+ N V N+ F + E+F +L ++ T ++D QF
Sbjct: 184 LFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSSTYDVFDQQF 243
Query: 133 PVNFSSVFATCSKNDIRIWSVRTLNELLRISVM 165
F+S FAT + V T+ ELL S+M
Sbjct: 244 ANFFTSFFATGEQGTRVFGYVTTMGELLNASIM 276
>pdb|2V8N|A Chain A, Wild-Type Structure Of Lactose Permease
pdb|2V8N|B Chain B, Wild-Type Structure Of Lactose Permease
Length = 417
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 7/134 (5%)
Query: 39 AVLMGCYGXXXXXXXXXXXXDVNAEDVSLYSAG-----VTALYLLKDDSGISSLQYNPV- 92
A + GC G +N + V +G L+ K D+ S+ N V
Sbjct: 143 ARMFGCVGWALCASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG 202
Query: 93 -NNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVFATCSKNDIRIW 151
N+ F + E+F +L ++ T ++D QF F+S FAT +
Sbjct: 203 ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFG 262
Query: 152 SVRTLNELLRISVM 165
V T+ ELL S+M
Sbjct: 263 YVTTMGELLNASIM 276
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 208 HNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCV 248
HN V +++ GT L S G +G+VR+WK T S +C+
Sbjct: 303 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY-SNEFKCM 342
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 208 HNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCV 248
HN V +++ GT L S G +G+VR+WK T S +C+
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY-SNEFKCM 344
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 208 HNRGVTALAITQDGTRLLSGGGEGQVRIWKLT 239
HN V +++ GT L S G +G+VR+WK T
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT 336
>pdb|4H5I|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P1 Form)
pdb|4H5I|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P1 Form)
pdb|4H5J|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P64 Form)
pdb|4H5J|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P64 Form)
Length = 365
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 377 GHAASITKIKISPDKKVIVSVSADGGIFLWTFP 409
H+ +IT++ ISPD + SVSA I + P
Sbjct: 310 AHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 350 KYFLTGGADQIVKMWMYREGVPCFVGI---GHAASITKIKISPD----KKVIVSVSADGG 402
K F +GG D ++K+W E H+ + + +P I S S DG
Sbjct: 180 KRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239
Query: 403 IFLWT 407
+F+WT
Sbjct: 240 VFIWT 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,967,683
Number of Sequences: 62578
Number of extensions: 510817
Number of successful extensions: 2128
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1130
Number of HSP's gapped (non-prelim): 522
length of query: 515
length of database: 14,973,337
effective HSP length: 103
effective length of query: 412
effective length of database: 8,527,803
effective search space: 3513454836
effective search space used: 3513454836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)