RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17610
(515 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 136 bits (344), Expect = 2e-36
Identities = 75/287 (26%), Positives = 125/287 (43%), Gaps = 9/287 (3%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAIL 182
HT + + F + + I++W + T L + + + DG +
Sbjct: 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67
Query: 183 SGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRES 242
SG +D IR + ++G+ + H V+++A + DG L S + +++W +
Sbjct: 68 SGSSDKTIRLWDLETGECVRTL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK 126
Query: 243 QSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRLIIMILPSM---IMS 299
L+ HT V+ + D S+S DGT LWDL T + L + S
Sbjct: 127 CLT--TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL--RTGKCVATLTGHTGEVNS 182
Query: 300 AAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQ 359
A+ P +L++ S++ I W+ G + +L G + VN V F DG +G D
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE-NGVNSVAFSPDGYLLASGSEDG 241
Query: 360 IVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
+++W R G GH S+T + SPD K + S SADG I +W
Sbjct: 242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288
Score = 127 bits (320), Expect = 4e-33
Identities = 75/303 (24%), Positives = 114/303 (37%), Gaps = 65/303 (21%)
Query: 208 HNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKE 267
H GVT +A + DG L +G G+G +++W L E+ L LK HT V + +D
Sbjct: 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDL--ETGELLRTLKGHTGPVRDVAASADGTY 65
Query: 268 AMSASTDGTCVLWDLIKSTRLIIMILPSMIMSAAYHPSEVQLITCSTNKMIDYWETCDGS 327
S S+D T LWDL G
Sbjct: 66 LASGSSDKTIRLWDLET-----------------------------------------GE 84
Query: 328 IIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKI 387
+R+L G + V+ V F DG+ + D+ +K+W G GH + +
Sbjct: 85 CVRTLTGHT-SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143
Query: 388 SPDKKVIVSVSADGGIFLWTFPELEDDVGDSRSLSSKISRSTARSTRLIIMILPSMIMSA 447
SPD + S S DG I LW D R+ L + S
Sbjct: 144 SPDGTFVASSSQDGTIKLW----------DLRTGKCV--------ATLTGHTGE--VNSV 183
Query: 448 AYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQI 507
A+ P +L++ S++ I W+ G + +L G + VN V F DG +G D
Sbjct: 184 AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE-NGVNSVAFSPDGYLLASGSEDGT 242
Query: 508 VKI 510
+++
Sbjct: 243 IRV 245
Score = 124 bits (314), Expect = 3e-32
Identities = 79/300 (26%), Positives = 129/300 (43%), Gaps = 25/300 (8%)
Query: 171 CIVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGE 230
C+ F+ DGK + +G DG I+ + ++G+L + H V +A + DGT L SG +
Sbjct: 14 CVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAASADGTYLASGSSD 72
Query: 231 GQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRLII 290
+R+W L E+ L HTS VS + D + S+S D T +WD+ L
Sbjct: 73 KTIRLWDL--ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT 130
Query: 291 MILPSM-IMSAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDG 349
+ + + S A+ P + + S + I W+ G + +L G VN V F DG
Sbjct: 131 LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT-GEVNSVAFSPDG 189
Query: 350 KYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLWTFP 409
+ L+ +D +K+W G GH + + SPD ++ S S DG I +W
Sbjct: 190 EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW--- 246
Query: 410 ELEDDVGDSRSLSSKISRSTARSTRLIIMILPSMIMSAAYHPSEVQLITCSTNKMIDYWE 469
D+ + +S T + S A+ P +L + S + I W+
Sbjct: 247 ----DL-RTGECVQTLSGHTNS------------VTSLAWSPDGKRLASGSADGTIRIWD 289
Score = 92.0 bits (229), Expect = 9e-21
Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 13/246 (5%)
Query: 82 SGISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTL-TLVNTCHTSAIYDLQFPVNFSSVF 140
+ + + + G+ + I L D+ +G + TL T HTS + + F +
Sbjct: 52 GPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL--TGHTSYVSSVAF-SPDGRIL 108
Query: 141 ATCSK-NDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGK 199
++ S+ I++W V T L + + F+ DG + S DG I+ + ++GK
Sbjct: 109 SSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK 168
Query: 200 LKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVI 259
+ H V ++A + DG +LLS +G +++W L+ + L+ H + V+ +
Sbjct: 169 CVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS--TGKCLGTLRGHENGVNSV 225
Query: 260 QIKSDSKEAMSASTDGTCVLWDLIKSTRLIIMILP---SMIMSAAYHPSEVQLITCSTNK 316
D S S DGT +WDL T + L + + S A+ P +L + S +
Sbjct: 226 AFSPDGYLLASGSEDGTIRVWDL--RTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283
Query: 317 MIDYWE 322
I W+
Sbjct: 284 TIRIWD 289
Score = 85.5 bits (212), Expect = 2e-18
Identities = 54/204 (26%), Positives = 77/204 (37%), Gaps = 24/204 (11%)
Query: 329 IRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKIS 388
R+L+G V CV F DGK TG D +K+W G GH + + S
Sbjct: 2 RRTLKGHT-GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 389 PDKKVIVSVSADGGIFLW---------TFPELEDDV------GDSRSLSSKISRSTAR-- 431
D + S S+D I LW T V D R LSS T +
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 432 --STRLIIMILP---SMIMSAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAA 486
T + L + S A+ P + + S + I W+ G + +L G
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT-GE 179
Query: 487 VNCVDFVDDGKYFLTGGADQIVKI 510
VN V F DG+ L+ +D +K+
Sbjct: 180 VNSVAFSPDGEKLLSSSSDGTIKL 203
Score = 50.4 bits (121), Expect = 9e-07
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 81 DSGISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQFPVNFSSVF 140
++S+ ++P K+ + + I L D+++G L H + + + F + +
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG-TLRGHENGVNSVAFSPD-GYLL 234
Query: 141 ATCSKND-IRIWSVRTLNELLRISVMNMICACIVFTYDGKAILSGWNDGFIR 191
A+ S++ IR+W +RT + +S + ++ DGK + SG DG IR
Sbjct: 235 ASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR 286
Score = 35.0 bits (81), Expect = 0.072
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 476 IRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKIC 511
R+L+G V CV F DGK TG D +K+
Sbjct: 2 RRTLKGHT-GGVTCVAFSPDGKLLATGSGDGTIKVW 36
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 112 bits (279), Expect = 2e-26
Identities = 95/340 (27%), Positives = 153/340 (45%), Gaps = 13/340 (3%)
Query: 76 YLLKDDSGISSLQYNPVNNKVFV---GTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQF 132
DS +S L + + + +++ + L D+++ L H+ ++ L F
Sbjct: 104 LEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAF 163
Query: 133 -PVNFSSVFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGK-AILSGWNDGFI 190
P + I++W +RT L ++ + + F+ DG I SG +DG I
Sbjct: 164 SPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI 223
Query: 191 RCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLK 250
R + +GKL + H+ V + + + DG+ L SG +G +R+W L R S SL L
Sbjct: 224 RLWDLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDL-RSSSSLLRTLS 281
Query: 251 EHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRLIIMILP---SMIMSAAYHPSEV 307
H+SSV + D K S S+DGT LWDL L + L + S ++ P
Sbjct: 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGS 341
Query: 308 QLIT-CSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMWMY 366
L++ S + I W+ G +++LEG V V F DG+ +G D V++W
Sbjct: 342 LLVSGGSDDGTIRLWDLRTGKPLKTLEGHS--NVLSVSFSPDGRVVSSGSTDGTVRLWDL 399
Query: 367 REGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
G GH + +T + SPD K + S S+D I LW
Sbjct: 400 STGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439
Score = 110 bits (274), Expect = 7e-26
Identities = 97/414 (23%), Positives = 175/414 (42%), Gaps = 35/414 (8%)
Query: 77 LLKDDSGISSLQYNPVNNKVFVGTVNCEIFLIDMNSGFTLTLVNTC-HTSAIYDLQFPVN 135
L + I+S+ ++P + G+ + I L D+++G L H S++ L
Sbjct: 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120
Query: 136 FSSVFATCS---KNDIRIWSVRTLNELLR-ISVMNMICACIVFTYDGKAILSGWN-DGFI 190
+ S +++W + T +L+R + + + F+ DGK + SG + DG I
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180
Query: 191 RCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGE-GQVRIWKLTRESQSLQCVL 249
+ + ++GK + H V++LA + DG L++ G G +R+W L + L+ L
Sbjct: 181 KLWDLRTGKPLSTLAG-HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL-STGKLLRSTL 238
Query: 250 KEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKSTRLIIMILP--SMIMSAAYHPSEV 307
H+ SV V D S S+DGT LWDL S+ L+ + S ++S A+ P
Sbjct: 239 SGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK 297
Query: 308 QLITCSTNKMIDYWETCDGSIIRSLEGSD-VAAVNCVDFVDDGKYFLTGGA-DQIVKMWM 365
L + S++ + W+ G ++ SL V+ + F DG ++GG+ D +++W
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357
Query: 366 YREGVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLWTFPELEDDVGDSRSLSSKI 425
R G + +++ + SPD +V+ S S DG + LW
Sbjct: 358 LRTG-KPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLR---------- 406
Query: 426 SRSTARSTRLIIMILPSMIMSAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSL 479
+ S + S + P L + S++ I W+ S
Sbjct: 407 ----------NLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
Score = 102 bits (255), Expect = 2e-23
Identities = 83/315 (26%), Positives = 141/315 (44%), Gaps = 5/315 (1%)
Query: 53 VSTKLKDVNAEDVSLYSAGVTALYLLKDDSGISSLQYNPVNNKVFVG-TVNCEIFLIDMN 111
+++ D + L + G L ++SL ++P + G +++ I L D+
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186
Query: 112 SGFTLTLVNTCHTSAIYDLQFPVNFSSVFATCSK-NDIRIWSVRTLNELLRISVMNMICA 170
+G L+ + HT + L F + + A+ S IR+W + T L +
Sbjct: 187 TGKPLSTLAG-HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245
Query: 171 CIVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGE 230
F+ DG + SG +DG IR + +S + H+ V ++A + DG L SG +
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD 305
Query: 231 GQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSD-SKEAMSASTDGTCVLWDLIKSTRLI 289
G VR+W L LK H VS + D S S DGT LWDL L
Sbjct: 306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK 365
Query: 290 IMILPSMIMSAAYHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDG 349
+ S ++S ++ P + + ST+ + W+ GS++R+L+G + V +DF DG
Sbjct: 366 TLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDG-HTSRVTSLDFSPDG 424
Query: 350 KYFLTGGADQIVKMW 364
K +G +D +++W
Sbjct: 425 KSLASGSSDNTIRLW 439
Score = 97.5 bits (241), Expect = 1e-21
Identities = 90/350 (25%), Positives = 158/350 (45%), Gaps = 33/350 (9%)
Query: 171 CIVFTYDGKAILSGWNDGFIRCFTPQSGKLKF-IIPNAHNRGVTALAI-TQDGTRLLSGG 228
I F+ DG+ +LSG +DG I+ + +G+ + H+ V+ LA+ + DG +L
Sbjct: 70 SIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS 129
Query: 229 GE--GQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSAST-DGTCVLWDLIKS 285
G V++W L+ + ++ L+ H+ SV+ + D K S S+ DGT LWDL
Sbjct: 130 SSLDGTVKLWDLSTPGKLIR-TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG 188
Query: 286 TRLIIMILPSM-IMSAAYHP-SEVQLITCSTNKMIDYWETCDGSIIRS-LEGSDVAAVNC 342
L + + + S A+ P + + + S++ I W+ G ++RS L G + V+
Sbjct: 189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS 248
Query: 343 VDFVDDGKYFLTGGADQIVKMWMYREGVPCF-VGIGHAASITKIKISPDKKVIVSVSADG 401
F DG +G +D +++W R GH++S+ + SPD K++ S S+DG
Sbjct: 249 --FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDG 306
Query: 402 GIFLWTFPELEDDVGDSRSLSSKISRSTARSTRLIIMILPSMIMSAAYHPSEVQLIT-CS 460
+ LW D + S + + S ++ P L++ S
Sbjct: 307 TVRLW----------DLETGKLLSSLTLKGHE--------GPVSSLSFSPDGSLLVSGGS 348
Query: 461 TNKMIDYWETCDGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKI 510
+ I W+ G +++LEG V V F DG+ +G D V++
Sbjct: 349 DDGTIRLWDLRTGKPLKTLEGHS--NVLSVSFSPDGRVVSSGSTDGTVRL 396
Score = 85.9 bits (211), Expect = 8e-18
Identities = 83/358 (23%), Positives = 148/358 (41%), Gaps = 28/358 (7%)
Query: 156 LNELLRISVMNMICACIVFTYDGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTAL 215
++LL+ S + + G + + L ++ H +T++
Sbjct: 12 KSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSI 71
Query: 216 AITQDGTRLLSGGGEGQVRIWKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSAST-- 273
A + DG LLSG +G +++W L + ++ + H SSVS + + S ++ ++
Sbjct: 72 AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131
Query: 274 -DGTCVLWDLIKSTRLI--IMILPSMIMSAAYHPSEVQLITCSTNKM-IDYWETCDGSII 329
DGT LWDL +LI + + S A+ P L + S+ I W+ G +
Sbjct: 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL 191
Query: 330 RSLEGSDVAAVNCVDFVDDGK-YFLTGGADQIVKMWMYREGVPCFVGIGHAASITKIKIS 388
+L G V+ + F DG +G +D +++W G + + S
Sbjct: 192 STLAGHT-DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFS 250
Query: 389 PDKKVIVSVSADGGIFLWTFPELEDDVGDSRSLSSKISRSTARSTRLIIMILPSMIMSAA 448
PD ++ S S+DG I LW D RS SS + + S S ++S A
Sbjct: 251 PDGSLLASGSSDGTIRLW----------DLRSSSSLLRTLSGHS---------SSVLSVA 291
Query: 449 YHPSEVQLITCSTNKMIDYWETCDGSIIRSLEGSD-VAAVNCVDFVDDGKYFLTGGAD 505
+ P L + S++ + W+ G ++ SL V+ + F DG ++GG+D
Sbjct: 292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 38.5 bits (90), Expect = 2e-04
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 326 GSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMW 364
G ++R+L+G V V F DG +G D V++W
Sbjct: 1 GKLLRTLKGHT-GPVTSVAFSPDGNLLASGSDDGTVRVW 38
Score = 36.6 bits (85), Expect = 0.001
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 207 AHNRGVTALAITQDGTRLLSGGGEGQVRIWK 237
H VT++A + DG L SG +G VR+W
Sbjct: 9 GHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 36.2 bits (84), Expect = 0.001
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 369 GVPCFVGIGHAASITKIKISPDKKVIVSVSADGGIFLW 406
G GH +T + SPD ++ S S DG + +W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
Score = 35.8 bits (83), Expect = 0.002
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 473 GSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKI 510
G ++R+L+G V V F DG +G D V++
Sbjct: 1 GKLLRTLKGHT-GPVTSVAFSPDGNLLASGSDDGTVRV 37
Score = 34.3 bits (79), Expect = 0.007
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 244 SLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWD 281
L LK HT V+ + D S S DGT +WD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 25.8 bits (57), Expect = 6.3
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 114 FTLTLVNTCHTSAIYDLQFPVNFSSVFATCSK-NDIRIWS 152
L HT + + F ++ A+ S +R+W
Sbjct: 1 GKLLRTLKGHTGPVTSVAF-SPDGNLLASGSDDGTVRVWD 39
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 38.4 bits (90), Expect = 2e-04
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 325 DGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKMW 364
G ++++L+G V V F DGKY +G D +K+W
Sbjct: 1 SGELLKTLKGHT-GPVTSVAFSPDGKYLASGSDDGTIKLW 39
Score = 36.5 bits (85), Expect = 0.001
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 197 SGKLKFIIPNAHNRGVTALAITQDGTRLLSGGGEGQVRIWK 237
SG+L + H VT++A + DG L SG +G +++W
Sbjct: 1 SGELLKTL-KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 35.8 bits (83), Expect = 0.002
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 377 GHAASITKIKISPDKKVIVSVSADGGIFLW 406
GH +T + SPD K + S S DG I LW
Sbjct: 10 GHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
Score = 35.8 bits (83), Expect = 0.002
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 472 DGSIIRSLEGSDVAAVNCVDFVDDGKYFLTGGADQIVKI 510
G ++++L+G V V F DGKY +G D +K+
Sbjct: 1 SGELLKTLKGHT-GPVTSVAFSPDGKYLASGSDDGTIKL 38
Score = 33.8 bits (78), Expect = 0.009
Identities = 17/40 (42%), Positives = 19/40 (47%)
Query: 242 SQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWD 281
S L LK HT V+ + D K S S DGT LWD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 26.1 bits (58), Expect = 5.3
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 121 TCHTSAIYDLQFPVNFSSVFATCSK-NDIRIWS 152
HT + + F A+ S I++W
Sbjct: 9 KGHTGPVTSVAF-SPDGKYLASGSDDGTIKLWD 40
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 38.8 bits (90), Expect = 0.006
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 123 HTSAIYDLQFPVNFSSVFATCSKN-DIRIWSVRTLNE 158
HTS+I DLQF FS + A+ S++ IR+W + +E
Sbjct: 73 HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDE 109
Score = 36.1 bits (83), Expect = 0.051
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 224 LLSGGGEGQVRIWKLTRESQSL------QCVLKEHTSSVSVIQIKSDSKEAMSAST-DGT 276
L SG + +R+W++ +S+ QC+LK H +S+I + M +S D
Sbjct: 90 LASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF 149
Query: 277 CVLWDLIKSTRLIIMILPSMIMS 299
+WD+ R + +P + S
Sbjct: 150 VNIWDIENEKRAFQINMPKKLSS 172
>gnl|CDD|110319 pfam01306, LacY_symp, LacY proton/sugar symporter. This family is
closely related to the sugar transporter family.
Length = 413
Score = 34.0 bits (78), Expect = 0.17
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 75 LYLLKDDSGISSLQYNPV--NNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQF 132
L K D S++ + + N F + E+F + F L +V ++D QF
Sbjct: 184 LMFAKPDKSSSAIVADALGANKSAFSLRLALELFRMPKFWVFVLYVVGVACVYDVFDQQF 243
Query: 133 PVNFSSVFATCSKNDIRIWS-VRTLNELLRISVM 165
F+S FAT + R++ V T+ ELL +M
Sbjct: 244 ANFFTSFFAT-PQQGTRVFGYVTTMGELLNALIM 276
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 33.1 bits (75), Expect = 0.38
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 177 DGKAILSGWNDGFIRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRLLS-GGGEGQVRI 235
D + SG +DG ++ ++ G I N + + + R L+ G + +V
Sbjct: 587 DPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN--ICCVQFPSESGRSLAFGSADHKVYY 644
Query: 236 WKLTRESQSLQCVLKEHTSSVSVIQIKSDSKEAMSASTDGTCVLWDLIKS 285
+ L R + C + H+ +VS ++ DS +S+STD T LWDL S
Sbjct: 645 YDL-RNPKLPLCTMIGHSKTVSYVRF-VDSSTLVSSSTDNTLKLWDLSMS 692
>gnl|CDD|236312 PRK08617, PRK08617, acetolactate synthase; Reviewed.
Length = 552
Score = 32.5 bits (75), Expect = 0.55
Identities = 16/24 (66%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
Query: 389 PDKKVIVSVSADGGIFLWTFPELE 412
P KKV VSVS DGG FL++ ELE
Sbjct: 431 PGKKV-VSVSGDGG-FLFSAMELE 452
>gnl|CDD|211613 TIGR00882, 2A0105, oligosaccharide:H+ symporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 396
Score = 30.9 bits (70), Expect = 1.5
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 75 LYLLKDDSGISSLQYNPV--NNKVFVGTVNCEIFLIDMNSGFTLTLVNTCHTSAIYDLQF 132
L K + S+ N + N F + E+F F L +V ++D QF
Sbjct: 179 LMFAKPKAPSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQF 238
Query: 133 PVNFSSVFATCSKNDIRIWS-VRTLNELLRISVM 165
F+S FAT + R++ V T+ ELL +M
Sbjct: 239 ANFFTSFFAT-PQQGTRVFGYVTTMGELLNALIM 271
>gnl|CDD|181337 PRK08266, PRK08266, hypothetical protein; Provisional.
Length = 542
Score = 31.1 bits (71), Expect = 1.6
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 389 PDKKVIVSVSADGGIFLWTFPEL 411
PD+ V VS++ DGG F++ EL
Sbjct: 419 PDRPV-VSITGDGG-FMFGVQEL 439
>gnl|CDD|224588 COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related
proteins [Cell division and chromosome partitioning].
Length = 858
Score = 31.0 bits (70), Expect = 1.7
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 17/58 (29%)
Query: 274 DGTCVLWDLIKSTRLII---------MILPSMIMSAAYH--PSEVQLITCSTNKMIDY 320
++ DL K+ L+I + L +MI+S Y P EV+ +ID
Sbjct: 519 RQEPIVIDLAKAGHLLIAGATGSGKSVALNTMILSLLYTHSPEEVRFY------IIDP 570
Score = 30.6 bits (69), Expect = 2.2
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 8/30 (26%)
Query: 440 LPSMIMSAAYH--PSEVQLITCSTNKMIDY 467
L +MI+S Y P EV+ +ID
Sbjct: 547 LNTMILSLLYTHSPEEVRFY------IIDP 570
>gnl|CDD|221346 pfam11967, RecO_N, Recombination protein O N terminal.
Recombination protein O (RecO) is involved in DNA repair
and pfam00470 pathway recombination. This domain forms a
beta barrel structure.
Length = 80
Score = 27.9 bits (63), Expect = 2.5
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 190 IRCFTPQSGKLKFIIPNAHNRGVTALAITQDGTRL---LSGGGEG 231
+ FT + GK+ + A A Q T L L GG G
Sbjct: 23 VTLFTREHGKISGVARGARKPKSRLRAALQPFTLLELVLYAGGRG 67
>gnl|CDD|222066 pfam13353, Fer4_12, 4Fe-4S single cluster domain. This family
includes proteins containing domains which bind to
iron-sulfur clusters. Members include bacterial
ferredoxins, various dehydrogenases, and various
reductases. The structure of the domain is an
alpha-antiparallel beta sandwich.
Length = 140
Score = 28.7 bits (65), Expect = 3.8
Identities = 12/45 (26%), Positives = 16/45 (35%)
Query: 139 VFATCSKNDIRIWSVRTLNELLRISVMNMICACIVFTYDGKAILS 183
V DI +++ TL ELL + I DG S
Sbjct: 79 VKEEFPNKDIWLYTGYTLEELLPEQDKRELLKYIDVLVDGPFEQS 123
>gnl|CDD|131471 TIGR02418, acolac_catab, acetolactate synthase, catabolic.
Acetolactate synthase (EC 2.2.1.6) combines two
molecules of pyruvate to yield 2-acetolactate with the
release of CO2. This reaction may be involved in either
valine biosynthesis (biosynthetic) or conversion of
pyruvate to acetoin and possibly to 2,3-butanediol
(catabolic). The biosynthetic type, described by
TIGR00118, is also capable of forming
acetohydroxybutyrate from pyruvate and 2-oxobutyrate for
isoleucine biosynthesis. The family described here, part
of the same larger family of thiamine
pyrophosphate-dependent enzymes (pfam00205, pfam02776)
is the catabolic form, generally found associated with
in species with acetolactate decarboxylase and usually
found in the same operon. The model may not encompass
all catabolic acetolactate synthases, but rather one
particular clade in the larger TPP-dependent enzyme
family [Energy metabolism, Fermentation].
Length = 539
Score = 29.3 bits (66), Expect = 5.6
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 375 GIGHAASITKIKISPDKKVIVSVSADGGIFLWTFPELEDDV 415
G+ +I + P+ KV VSVS DGG FL++ ELE V
Sbjct: 411 GVALPWAIGAALVRPNTKV-VSVSGDGG-FLFSSMELETAV 449
>gnl|CDD|236549 PRK09528, lacY, galactoside permease; Reviewed.
Length = 420
Score = 29.1 bits (66), Expect = 7.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 114 FTLTLVNTCHTSAIYDLQFPVNFSSVFAT 142
L ++ ++D QFP F+S FAT
Sbjct: 228 LVLYVIGVACFYDVFDQQFPNFFASFFAT 256
>gnl|CDD|220834 pfam10647, Gmad1, Lipoprotein LpqB beta-propeller domain. The
Gmad1 domain is found associated with the GerMN family,
pfam10646, in bacterial spore formation. It is predicted
to have a beta-propeller fold and to have a passive
binding role rather than a catalytic function owing to
the low number of conserved hydrophilic residues.
Length = 254
Score = 28.2 bits (63), Expect = 9.2
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 210 RGVTALAITQDGTRLL---SGGGEGQVRIWKLTRESQSLQCVL 249
+T L +++DGTR GG GQV + + R+ L L
Sbjct: 111 GRITELRVSRDGTRAAVVVERGGGGQVYVAGVERDGGGLPRAL 153
>gnl|CDD|182489 PRK10477, PRK10477, outer membrane lipoprotein Blc; Provisional.
Length = 177
Score = 27.7 bits (62), Expect = 9.4
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 72 VTALYLLKDDSGISSLQ--YNPVNNK 95
VTA Y L+DD G++ + YNP
Sbjct: 60 VTATYSLRDDGGLNVINKGYNPDRGM 85
>gnl|CDD|214909 smart00915, Jacalin, Jacalin-like lectin domain. This entry
represents a mannose-binding lectin domain with a
beta-prism fold consisting of three 4-stranded
beta-sheets, with an internal pseudo 3-fold symmetry.
Some lectins in this group stimulate distinct T- and B-
cell functions, such as Jacalin, which binds to the
T-antigen and acts as an agglutinin. This domain is
found in 1 to 6 copies in lectins. The domain is also
found in the salt-stress induced protein from rice and
an animal prostatic spermine-binding protein.
Length = 128
Score = 27.2 bits (61), Expect = 10.0
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 71 GVTALYLLKDDSGISSLQYNPVNNKVFVGTV 101
GV +Y+ + GI S+Q++ G
Sbjct: 11 GVRKIYVGQGGEGIKSIQFDYDKGGKVWGDE 41
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.403
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,009,774
Number of extensions: 2348573
Number of successful extensions: 1966
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1877
Number of HSP's successfully gapped: 50
Length of query: 515
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 414
Effective length of database: 6,457,848
Effective search space: 2673549072
Effective search space used: 2673549072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)