Query psy17612
Match_columns 449
No_of_seqs 243 out of 362
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 18:33:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17612.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17612hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_R RPN7, 26S proteasome re 100.0 1.9E-43 6.4E-48 362.3 16.9 293 6-322 122-422 (429)
2 3txn_A 26S proteasome regulato 100.0 1.2E-30 4E-35 267.8 21.0 267 19-314 103-383 (394)
3 4b4t_Q 26S proteasome regulato 99.9 7.6E-22 2.6E-26 191.2 22.8 279 11-314 131-423 (434)
4 4b4t_P 26S proteasome regulato 99.8 1.1E-17 3.8E-22 172.7 23.7 289 10-323 132-435 (445)
5 4b4t_O 26S proteasome regulato 99.7 4.5E-15 1.6E-19 151.2 23.3 274 24-324 85-387 (393)
6 3t5x_A PCI domain-containing p 99.5 9.2E-14 3.1E-18 130.5 15.0 168 102-299 16-197 (203)
7 1ufm_A COP9 complex subunit 4; 99.2 5.1E-12 1.7E-16 104.2 5.1 56 229-297 23-78 (84)
8 3t5v_B Nuclear mRNA export pro 99.0 2.6E-09 9E-14 111.6 13.0 168 101-295 221-429 (455)
9 4b4t_S RPN3, 26S proteasome re 98.7 6.2E-08 2.1E-12 102.9 12.6 165 105-294 275-447 (523)
10 4b4t_Q 26S proteasome regulato 98.6 1E-05 3.5E-10 78.0 23.3 58 358-415 361-420 (434)
11 4b4t_R RPN7, 26S proteasome re 98.6 3.1E-08 1.1E-12 101.4 4.5 69 358-426 352-422 (429)
12 3txn_A 26S proteasome regulato 98.5 7.6E-06 2.6E-10 84.1 19.8 64 349-416 316-381 (394)
13 1ufm_A COP9 complex subunit 4; 98.1 4E-06 1.4E-10 68.9 5.5 48 354-401 30-78 (84)
14 3chm_A COP9 signalosome comple 97.9 0.00012 3.9E-09 67.4 12.1 129 142-295 25-157 (169)
15 4b0z_A RPN12, 26S proteasome r 97.1 0.026 8.9E-07 53.5 17.7 71 184-272 143-214 (229)
16 4b4t_O 26S proteasome regulato 96.5 0.0013 4.5E-08 66.8 3.8 71 358-428 312-387 (393)
17 4b4t_P 26S proteasome regulato 96.4 0.0019 6.4E-08 66.6 4.0 43 358-400 364-406 (445)
18 3t5x_A PCI domain-containing p 96.1 0.0048 1.6E-07 57.6 4.9 50 348-401 140-195 (203)
19 3vtx_A MAMA; tetratricopeptide 96.0 0.4 1.4E-05 40.3 16.1 163 14-202 4-168 (184)
20 3qky_A Outer membrane assembly 95.8 0.84 2.9E-05 40.9 18.3 74 10-84 10-83 (261)
21 4gco_A Protein STI-1; structur 95.1 0.15 5E-06 42.1 9.9 69 10-82 8-76 (126)
22 2ho1_A Type 4 fimbrial biogene 95.1 0.92 3.2E-05 39.6 15.6 69 10-82 31-100 (252)
23 1wi9_A Protein C20ORF116 homol 94.2 0.081 2.8E-06 42.5 5.8 56 225-293 10-65 (72)
24 2vq2_A PILW, putative fimbrial 94.1 2.3 7.8E-05 35.8 17.8 68 11-82 4-71 (225)
25 3nf1_A KLC 1, kinesin light ch 94.1 3 0.0001 37.0 16.6 75 11-85 23-101 (311)
26 2q7f_A YRRB protein; TPR, prot 93.8 2.9 0.0001 35.8 17.0 174 10-210 52-228 (243)
27 3uq3_A Heat shock protein STI1 93.5 3.3 0.00011 35.6 16.7 66 16-81 39-107 (258)
28 2xev_A YBGF; tetratricopeptide 93.4 0.45 1.6E-05 37.3 8.9 66 16-82 40-105 (129)
29 3ma5_A Tetratricopeptide repea 93.1 0.4 1.4E-05 37.5 8.1 71 11-85 3-73 (100)
30 3sf4_A G-protein-signaling mod 93.1 2.6 8.9E-05 39.0 14.9 75 12-86 6-80 (406)
31 3ro2_A PINS homolog, G-protein 92.9 4 0.00014 36.1 15.3 72 14-85 4-75 (338)
32 2xev_A YBGF; tetratricopeptide 92.8 0.38 1.3E-05 37.8 7.6 67 16-83 3-69 (129)
33 3hym_B Cell division cycle pro 92.8 5.1 0.00017 35.8 17.0 168 15-208 22-192 (330)
34 2vgx_A Chaperone SYCD; alterna 92.6 0.84 2.9E-05 38.4 10.0 71 8-82 14-84 (148)
35 3hym_B Cell division cycle pro 92.6 3.2 0.00011 37.2 14.4 68 12-83 87-155 (330)
36 3gyz_A Chaperone protein IPGC; 92.5 0.8 2.7E-05 39.6 10.0 71 7-82 28-99 (151)
37 3ieg_A DNAJ homolog subfamily 92.5 5.9 0.0002 35.7 21.6 64 15-82 3-66 (359)
38 2yhc_A BAMD, UPF0169 lipoprote 92.3 5.5 0.00019 35.1 17.0 69 16-85 5-73 (225)
39 2xcb_A PCRH, regulatory protei 92.3 1.1 3.8E-05 36.7 10.2 73 6-82 9-81 (142)
40 3k9i_A BH0479 protein; putativ 92.2 0.84 2.9E-05 36.2 9.0 69 11-83 23-91 (117)
41 1elw_A TPR1-domain of HOP; HOP 92.1 1 3.4E-05 33.8 9.0 66 13-82 2-67 (118)
42 2dba_A Smooth muscle cell asso 92.1 0.57 1.9E-05 37.2 7.9 71 11-82 24-94 (148)
43 3t5v_B Nuclear mRNA export pro 92.1 0.1 3.4E-06 54.6 4.2 35 365-399 395-429 (455)
44 3upv_A Heat shock protein STI1 92.1 0.79 2.7E-05 36.3 8.7 66 13-82 2-67 (126)
45 4b4t_S RPN3, 26S proteasome re 92.1 0.026 8.8E-07 60.2 -0.3 51 355-406 402-454 (523)
46 3uq3_A Heat shock protein STI1 92.1 5.3 0.00018 34.3 21.2 69 12-85 2-70 (258)
47 2lni_A Stress-induced-phosphop 92.0 0.77 2.6E-05 35.5 8.4 69 10-82 11-79 (133)
48 4gcn_A Protein STI-1; structur 91.9 1.1 3.7E-05 36.6 9.6 70 12-85 5-74 (127)
49 3chm_A COP9 signalosome comple 91.9 0.11 3.6E-06 47.6 3.7 44 358-401 114-159 (169)
50 1na3_A Designed protein CTPR2; 91.7 1.3 4.5E-05 32.2 9.1 66 13-82 7-72 (91)
51 3as5_A MAMA; tetratricopeptide 91.4 4.7 0.00016 32.4 15.7 67 12-82 5-71 (186)
52 4ga2_A E3 SUMO-protein ligase 91.4 0.84 2.9E-05 38.3 8.6 70 9-82 25-94 (150)
53 3mkr_A Coatomer subunit epsilo 91.2 9.5 0.00033 35.6 16.6 173 12-214 98-274 (291)
54 4eqf_A PEX5-related protein; a 91.2 9.4 0.00032 35.3 16.4 64 15-82 65-128 (365)
55 1elr_A TPR2A-domain of HOP; HO 91.1 1.4 4.9E-05 33.6 9.0 69 13-85 2-70 (131)
56 2gw1_A Mitochondrial precursor 91.1 11 0.00038 36.1 17.7 52 157-209 287-338 (514)
57 2l6j_A TPR repeat-containing p 91.0 1.1 3.9E-05 33.8 8.3 64 14-81 3-66 (111)
58 3ro3_A PINS homolog, G-protein 91.0 1.1 3.9E-05 35.1 8.6 77 9-85 43-121 (164)
59 1a17_A Serine/threonine protei 90.9 0.72 2.5E-05 37.3 7.5 64 15-82 47-110 (166)
60 2vyi_A SGTA protein; chaperone 90.9 1.9 6.6E-05 32.7 9.6 69 10-82 7-75 (131)
61 4a1s_A PINS, partner of inscut 90.9 11 0.00036 35.4 20.7 75 12-86 45-119 (411)
62 2kck_A TPR repeat; tetratricop 90.8 0.74 2.5E-05 34.4 6.9 63 15-79 40-103 (112)
63 1elr_A TPR2A-domain of HOP; HO 90.6 0.73 2.5E-05 35.3 6.9 70 12-81 35-107 (131)
64 3u4t_A TPR repeat-containing p 90.6 5.6 0.00019 34.9 13.6 62 16-81 4-65 (272)
65 2ho1_A Type 4 fimbrial biogene 90.5 8 0.00027 33.5 19.0 178 11-212 67-246 (252)
66 2y4t_A DNAJ homolog subfamily 90.4 12 0.00041 35.4 22.6 73 6-82 17-89 (450)
67 3q49_B STIP1 homology and U bo 90.4 1.1 3.6E-05 35.5 7.9 67 12-82 6-72 (137)
68 3sz7_A HSC70 cochaperone (SGT) 90.4 1.5 5.2E-05 36.5 9.2 69 10-82 6-74 (164)
69 2q7f_A YRRB protein; TPR, prot 90.3 6.1 0.00021 33.8 13.2 64 15-82 23-86 (243)
70 1a17_A Serine/threonine protei 89.9 2.2 7.6E-05 34.3 9.6 67 12-82 10-76 (166)
71 3t5v_A Nuclear mRNA export pro 89.8 0.69 2.4E-05 46.1 7.6 66 189-272 177-248 (316)
72 3ro3_A PINS homolog, G-protein 89.8 1.6 5.3E-05 34.3 8.4 75 11-85 5-81 (164)
73 2kat_A Uncharacterized protein 89.8 1.5 5.2E-05 34.2 8.2 73 9-85 13-85 (115)
74 3rkv_A Putative peptidylprolyl 89.6 1 3.5E-05 37.4 7.5 70 13-82 9-92 (162)
75 4gyw_A UDP-N-acetylglucosamine 89.5 5.3 0.00018 43.5 14.9 167 11-204 5-174 (723)
76 3upv_A Heat shock protein STI1 89.4 1.8 6E-05 34.2 8.4 69 11-83 34-102 (126)
77 2gw1_A Mitochondrial precursor 89.4 10 0.00035 36.4 15.3 170 12-208 234-405 (514)
78 2vyi_A SGTA protein; chaperone 89.4 2 6.7E-05 32.7 8.4 67 12-82 43-109 (131)
79 2pl2_A Hypothetical conserved 89.3 11 0.00037 33.2 15.6 65 14-82 4-68 (217)
80 3gw4_A Uncharacterized protein 89.3 2.6 8.9E-05 35.2 9.9 79 7-85 58-139 (203)
81 2pl2_A Hypothetical conserved 89.2 5.4 0.00019 35.1 12.4 71 9-81 33-112 (217)
82 2dba_A Smooth muscle cell asso 89.2 2.9 9.7E-05 33.0 9.6 65 14-82 64-128 (148)
83 4a1s_A PINS, partner of inscut 89.2 14 0.0005 34.5 17.7 72 14-85 85-158 (411)
84 3qky_A Outer membrane assembly 89.1 1.3 4.6E-05 39.6 8.4 74 11-85 48-129 (261)
85 3nf1_A KLC 1, kinesin light ch 89.1 11 0.00039 33.2 16.7 75 11-85 65-143 (311)
86 3edt_B KLC 2, kinesin light ch 88.9 2.7 9.2E-05 36.5 10.0 75 11-85 123-201 (283)
87 4eqf_A PEX5-related protein; a 88.9 14 0.00049 34.1 16.8 70 11-84 95-164 (365)
88 2lni_A Stress-induced-phosphop 88.7 2.2 7.6E-05 32.8 8.5 69 10-82 45-113 (133)
89 2vq2_A PILW, putative fimbrial 88.5 9.9 0.00034 31.8 16.5 67 11-81 38-105 (225)
90 3q15_A PSP28, response regulat 88.5 17 0.00058 34.4 16.3 77 9-85 135-214 (378)
91 3edt_B KLC 2, kinesin light ch 88.4 12 0.0004 32.4 17.0 75 11-85 39-117 (283)
92 2xcb_A PCRH, regulatory protei 88.4 1.9 6.4E-05 35.3 8.2 72 10-85 47-118 (142)
93 2y4t_A DNAJ homolog subfamily 88.2 18 0.00061 34.2 17.3 33 14-46 59-91 (450)
94 3ulq_A Response regulator aspa 88.1 17 0.00058 34.3 15.8 76 11-86 180-257 (383)
95 2kck_A TPR repeat; tetratricop 88.0 0.72 2.5E-05 34.4 5.0 66 12-81 3-68 (112)
96 3ieg_A DNAJ homolog subfamily 88.0 14 0.00049 33.1 17.4 184 12-214 151-345 (359)
97 3rkv_A Putative peptidylprolyl 88.0 2.4 8.1E-05 35.2 8.7 68 11-82 59-126 (162)
98 1xn7_A Hypothetical protein YH 87.9 0.48 1.7E-05 38.0 4.1 42 225-279 5-46 (78)
99 3sz7_A HSC70 cochaperone (SGT) 87.8 2.2 7.5E-05 35.5 8.4 71 11-85 41-111 (164)
100 4gco_A Protein STI-1; structur 87.8 1.9 6.6E-05 35.2 7.9 69 10-82 42-110 (126)
101 1na0_A Designed protein CTPR3; 87.7 3 0.0001 31.3 8.4 64 15-82 9-72 (125)
102 3u4t_A TPR repeat-containing p 87.6 14 0.00047 32.3 15.4 70 12-82 34-103 (272)
103 3q49_B STIP1 homology and U bo 87.6 2.4 8.3E-05 33.3 8.1 71 11-85 39-109 (137)
104 2fo7_A Synthetic consensus TPR 87.4 3.2 0.00011 31.3 8.4 68 12-83 32-99 (136)
105 1elw_A TPR1-domain of HOP; HOP 87.3 2 7E-05 32.0 7.2 67 11-81 34-100 (118)
106 2fbn_A 70 kDa peptidylprolyl i 86.9 3.2 0.00011 35.6 9.1 71 12-82 35-117 (198)
107 1hh8_A P67PHOX, NCF-2, neutrop 86.9 2 7E-05 36.5 7.8 62 16-81 38-99 (213)
108 4gcn_A Protein STI-1; structur 86.5 1.4 4.8E-05 35.9 6.3 70 10-79 37-109 (127)
109 1fch_A Peroxisomal targeting s 86.5 19 0.00066 32.9 15.5 30 178-207 254-283 (368)
110 2fo7_A Synthetic consensus TPR 86.5 4.3 0.00015 30.6 8.7 63 16-82 2-64 (136)
111 3as5_A MAMA; tetratricopeptide 86.4 3.6 0.00012 33.1 8.7 65 14-82 75-139 (186)
112 2k02_A Ferrous iron transport 86.1 0.74 2.5E-05 37.9 4.3 43 226-281 6-48 (87)
113 2vgx_A Chaperone SYCD; alterna 86.0 2.9 0.0001 35.0 8.2 72 10-85 50-121 (148)
114 1w3b_A UDP-N-acetylglucosamine 86.0 22 0.00077 33.1 15.3 67 11-81 29-95 (388)
115 2v5f_A Prolyl 4-hydroxylase su 85.9 3.1 0.00011 33.1 8.0 66 16-81 6-74 (104)
116 1na0_A Designed protein CTPR3; 85.9 4.5 0.00015 30.3 8.5 67 12-82 40-106 (125)
117 3ulq_A Response regulator aspa 85.6 14 0.00049 34.8 13.7 77 9-85 137-216 (383)
118 2kc7_A BFR218_protein; tetratr 85.2 3.9 0.00013 30.6 7.8 62 18-82 3-64 (99)
119 3ro2_A PINS homolog, G-protein 85.0 19 0.00066 31.6 18.8 73 14-86 42-116 (338)
120 3gyz_A Chaperone protein IPGC; 85.0 2.6 9E-05 36.2 7.6 70 10-83 65-134 (151)
121 2yhc_A BAMD, UPF0169 lipoprote 84.9 4.3 0.00015 35.8 9.2 62 19-81 151-212 (225)
122 3urz_A Uncharacterized protein 84.3 5.9 0.0002 34.7 9.7 69 10-82 33-117 (208)
123 4i17_A Hypothetical protein; T 84.2 4 0.00014 35.4 8.5 36 11-46 72-107 (228)
124 1fch_A Peroxisomal targeting s 84.1 25 0.00085 32.1 18.5 64 15-82 64-127 (368)
125 3cv0_A Peroxisome targeting si 84.1 22 0.00076 31.5 17.1 28 177-204 208-235 (327)
126 3vtx_A MAMA; tetratricopeptide 83.9 3.7 0.00013 34.2 7.9 67 11-81 103-169 (184)
127 3gw4_A Uncharacterized protein 83.4 5.4 0.00018 33.3 8.7 76 11-86 22-99 (203)
128 1hxi_A PEX5, peroxisome target 83.4 2.9 0.0001 33.8 6.8 64 16-83 18-81 (121)
129 2xpi_A Anaphase-promoting comp 83.3 37 0.0013 33.5 16.9 66 12-81 370-435 (597)
130 3u3w_A Transcriptional activat 83.3 5.1 0.00018 36.8 9.2 79 9-87 190-271 (293)
131 1rz4_A Eukaryotic translation 82.8 1.3 4.4E-05 42.1 5.0 82 184-292 107-189 (226)
132 4i17_A Hypothetical protein; T 82.6 23 0.00077 30.5 14.9 63 16-81 8-70 (228)
133 2heo_A Z-DNA binding protein 1 82.3 2.5 8.5E-05 32.3 5.6 50 219-281 8-57 (67)
134 1p5q_A FKBP52, FK506-binding p 82.0 5.8 0.0002 37.9 9.4 72 11-82 143-225 (336)
135 1xnf_A Lipoprotein NLPI; TPR, 81.7 4.5 0.00015 35.3 7.8 67 12-82 40-106 (275)
136 3fp2_A TPR repeat-containing p 81.3 41 0.0014 32.5 17.3 168 15-209 243-412 (537)
137 1nzn_A CGI-135 protein, fissio 80.9 1 3.5E-05 39.4 3.3 39 12-50 71-109 (126)
138 3cv0_A Peroxisome targeting si 80.9 30 0.001 30.7 15.9 70 11-84 51-120 (327)
139 2fbn_A 70 kDa peptidylprolyl i 79.8 7.8 0.00027 33.1 8.6 64 15-82 88-151 (198)
140 1qgp_A Protein (double strande 79.1 7.7 0.00026 30.5 7.6 57 224-295 17-76 (77)
141 3fp2_A TPR repeat-containing p 79.0 48 0.0016 32.0 18.6 63 11-77 55-117 (537)
142 2e2e_A Formate-dependent nitri 79.0 5.7 0.0002 33.0 7.3 67 11-82 40-110 (177)
143 1ihg_A Cyclophilin 40; ppiase 78.9 4.4 0.00015 39.8 7.5 70 12-81 220-301 (370)
144 1pc2_A Mitochondria fission pr 78.9 2.3 8E-05 38.2 5.0 36 13-48 69-104 (152)
145 1ihg_A Cyclophilin 40; ppiase 78.8 6.1 0.00021 38.8 8.5 70 10-83 268-337 (370)
146 1xnf_A Lipoprotein NLPI; TPR, 78.6 32 0.0011 29.8 16.3 68 11-82 73-140 (275)
147 2qfc_A PLCR protein; TPR, HTH, 78.6 10 0.00034 34.8 9.5 73 13-85 153-228 (293)
148 1kt0_A FKBP51, 51 kDa FK506-bi 78.3 7.5 0.00026 39.0 9.2 72 11-82 264-346 (457)
149 2hr2_A Hypothetical protein; a 78.1 22 0.00075 31.8 11.2 76 12-87 8-91 (159)
150 3sf4_A G-protein-signaling mod 77.3 44 0.0015 30.6 19.8 72 14-85 46-119 (406)
151 1qbj_A Protein (double-strande 76.9 6.3 0.00022 31.6 6.6 59 222-295 11-72 (81)
152 4abn_A Tetratricopeptide repea 76.6 64 0.0022 32.2 17.9 67 11-81 98-165 (474)
153 3mv2_B Coatomer subunit epsilo 76.3 42 0.0015 33.0 13.7 176 16-214 101-292 (310)
154 1hh8_A P67PHOX, NCF-2, neutrop 75.6 13 0.00045 31.4 8.8 65 13-84 4-68 (213)
155 1hxi_A PEX5, peroxisome target 75.3 15 0.00051 29.4 8.6 67 10-80 46-112 (121)
156 1p5q_A FKBP52, FK506-binding p 74.6 13 0.00045 35.5 9.4 65 14-82 195-259 (336)
157 4abn_A Tetratricopeptide repea 74.0 61 0.0021 32.4 14.5 67 10-82 132-208 (474)
158 4gyw_A UDP-N-acetylglucosamine 73.6 4.6 0.00016 44.0 6.5 72 10-85 106-177 (723)
159 1qqe_A Vesicular transport pro 73.5 13 0.00043 34.3 8.7 67 14-80 157-226 (292)
160 3u3w_A Transcriptional activat 73.1 12 0.0004 34.3 8.3 73 13-85 153-228 (293)
161 4ga2_A E3 SUMO-protein ligase 73.0 6.6 0.00023 32.7 6.1 68 10-82 60-129 (150)
162 2c2l_A CHIP, carboxy terminus 72.9 8.6 0.00029 35.6 7.4 63 15-81 4-66 (281)
163 3q15_A PSP28, response regulat 71.6 68 0.0023 30.2 15.8 68 18-86 104-174 (378)
164 2h6f_A Protein farnesyltransfe 71.4 82 0.0028 31.0 16.6 68 9-81 91-160 (382)
165 2ifu_A Gamma-SNAP; membrane fu 70.4 12 0.0004 34.8 7.7 68 13-80 153-222 (307)
166 2h6f_A Protein farnesyltransfe 70.2 87 0.003 30.8 18.5 67 10-81 126-194 (382)
167 2r5s_A Uncharacterized protein 70.2 11 0.00037 31.7 6.8 65 11-77 104-168 (176)
168 3qwp_A SET and MYND domain-con 70.1 20 0.00069 36.3 10.0 84 10-94 324-411 (429)
169 1hz4_A MALT regulatory protein 70.0 26 0.00089 32.6 10.1 74 12-85 132-206 (373)
170 2ond_A Cleavage stimulation fa 69.7 16 0.00056 33.7 8.5 73 12-85 200-273 (308)
171 2xpi_A Anaphase-promoting comp 69.5 90 0.0031 30.7 17.4 64 13-80 303-366 (597)
172 2c2l_A CHIP, carboxy terminus 68.8 14 0.00049 34.0 8.0 71 11-85 34-104 (281)
173 2qfc_A PLCR protein; TPR, HTH, 68.6 22 0.00077 32.4 9.2 73 12-84 72-146 (293)
174 2l6j_A TPR repeat-containing p 68.5 10 0.00034 28.3 5.7 38 11-48 34-71 (111)
175 3qww_A SET and MYND domain-con 68.5 23 0.00077 36.1 10.0 83 11-95 336-423 (433)
176 2e2e_A Formate-dependent nitri 68.3 15 0.0005 30.5 7.2 66 13-82 76-144 (177)
177 1kt0_A FKBP51, 51 kDa FK506-bi 68.2 14 0.00049 36.9 8.4 65 14-82 316-380 (457)
178 2pzi_A Probable serine/threoni 67.9 1.1E+02 0.0039 32.1 15.6 70 9-82 427-496 (681)
179 3o48_A Mitochondria fission 1 67.7 5.2 0.00018 35.5 4.3 39 12-50 75-113 (134)
180 3qou_A Protein YBBN; thioredox 67.5 76 0.0026 29.1 13.6 64 12-79 114-177 (287)
181 1y8m_A FIS1; mitochondria, unk 67.4 5.3 0.00018 35.8 4.4 38 13-50 75-112 (144)
182 2vsy_A XCC0866; transferase, g 67.4 16 0.00056 36.9 8.6 32 14-45 56-87 (568)
183 3bee_A Putative YFRE protein; 67.3 8.3 0.00028 30.7 5.2 65 14-82 5-72 (93)
184 2kc7_A BFR218_protein; tetratr 65.8 10 0.00034 28.3 5.2 38 11-48 30-68 (99)
185 1sfx_A Conserved hypothetical 65.1 14 0.00048 28.6 6.1 49 222-284 21-69 (109)
186 1w3b_A UDP-N-acetylglucosamine 64.6 90 0.0031 28.9 18.0 68 10-81 96-163 (388)
187 4b4t_T 26S proteasome regulato 64.2 10 0.00035 36.8 6.1 67 187-270 153-221 (274)
188 2jt1_A PEFI protein; solution 64.1 8.8 0.0003 30.5 4.7 44 223-279 5-54 (77)
189 3n71_A Histone lysine methyltr 63.3 31 0.0011 35.7 9.9 83 11-95 347-434 (490)
190 1na3_A Designed protein CTPR2; 62.8 7.5 0.00026 28.0 3.8 37 11-47 39-75 (91)
191 1ub9_A Hypothetical protein PH 62.6 15 0.00053 28.3 5.9 51 219-283 14-64 (100)
192 2vsy_A XCC0866; transferase, g 62.5 20 0.00069 36.2 8.2 70 9-82 17-86 (568)
193 1wao_1 Serine/threonine protei 62.0 19 0.00066 36.4 8.0 68 11-82 36-103 (477)
194 2ifu_A Gamma-SNAP; membrane fu 61.3 23 0.00079 32.8 7.8 75 11-85 72-147 (307)
195 3urz_A Uncharacterized protein 60.9 34 0.0012 29.7 8.4 65 14-82 3-83 (208)
196 2ooe_A Cleavage stimulation fa 60.6 23 0.00079 35.3 8.2 73 12-85 422-495 (530)
197 2oqg_A Possible transcriptiona 60.5 18 0.00062 28.9 6.1 49 221-284 21-69 (114)
198 3mkr_A Coatomer subunit epsilo 60.3 1.1E+02 0.0036 28.4 12.7 68 13-82 128-195 (291)
199 2if4_A ATFKBP42; FKBP-like, al 60.2 21 0.00071 34.1 7.5 63 16-82 231-293 (338)
200 2hr2_A Hypothetical protein; a 58.3 52 0.0018 29.3 9.2 70 16-85 58-134 (159)
201 2htj_A P fimbrial regulatory p 58.2 15 0.00051 28.2 5.0 43 224-280 3-45 (81)
202 3cuo_A Uncharacterized HTH-typ 58.2 28 0.00094 26.8 6.7 52 220-285 23-74 (99)
203 2qvo_A Uncharacterized protein 57.8 30 0.001 27.2 6.9 74 222-319 13-89 (95)
204 2if4_A ATFKBP42; FKBP-like, al 57.7 22 0.00074 34.0 7.1 71 12-82 176-259 (338)
205 3t8r_A Staphylococcus aureus C 57.6 25 0.00087 30.3 6.9 64 220-297 12-75 (143)
206 2r5s_A Uncharacterized protein 56.7 5.8 0.0002 33.4 2.6 62 14-79 5-66 (176)
207 3ma5_A Tetratricopeptide repea 56.5 9.2 0.00031 29.5 3.5 36 11-46 37-72 (100)
208 2d1h_A ST1889, 109AA long hypo 56.4 49 0.0017 25.4 7.9 51 222-285 22-72 (109)
209 2v79_A DNA replication protein 56.1 15 0.0005 31.9 5.1 67 207-286 18-90 (135)
210 1qqe_A Vesicular transport pro 54.6 1.3E+02 0.0043 27.4 16.7 77 9-85 71-150 (292)
211 3lwf_A LIN1550 protein, putati 54.1 34 0.0011 30.4 7.2 63 221-297 29-91 (159)
212 3k9i_A BH0479 protein; putativ 53.9 9.2 0.00031 29.9 3.2 38 11-48 57-94 (117)
213 3bee_A Putative YFRE protein; 50.8 51 0.0017 25.9 7.2 41 10-51 38-78 (93)
214 1q1h_A TFE, transcription fact 50.3 7.8 0.00027 31.3 2.2 61 208-281 5-65 (110)
215 3dpl_C Cullin-5; ubiquitin, NE 49.8 1.5E+02 0.0051 29.7 12.0 130 226-383 204-368 (382)
216 2v5f_A Prolyl 4-hydroxylase su 49.3 18 0.00061 28.5 4.2 37 12-48 43-79 (104)
217 1xmk_A Double-stranded RNA-spe 48.7 22 0.00075 28.4 4.6 46 221-280 11-57 (79)
218 1xi4_A Clathrin heavy chain; a 48.6 2.9E+02 0.01 33.4 15.6 161 16-225 1196-1378(1630)
219 3tqn_A Transcriptional regulat 48.6 26 0.00089 28.8 5.3 64 215-293 11-75 (113)
220 2ond_A Cleavage stimulation fa 48.2 1.6E+02 0.0055 26.8 14.9 66 10-79 94-160 (308)
221 3r0a_A Putative transcriptiona 46.8 52 0.0018 27.3 6.9 49 221-282 26-75 (123)
222 3qou_A Protein YBBN; thioredox 46.5 44 0.0015 30.7 7.1 38 11-48 215-252 (287)
223 2kko_A Possible transcriptiona 44.9 28 0.00096 28.2 4.9 51 220-285 24-74 (108)
224 2kat_A Uncharacterized protein 44.2 21 0.00072 27.4 3.8 37 11-47 49-85 (115)
225 2pzi_A Probable serine/threoni 43.9 2E+02 0.0067 30.3 12.4 154 26-209 402-565 (681)
226 2y75_A HTH-type transcriptiona 43.2 79 0.0027 26.1 7.5 43 253-296 30-72 (129)
227 1v4r_A Transcriptional repress 43.1 11 0.00037 30.3 2.0 70 215-299 13-83 (102)
228 3jth_A Transcription activator 42.7 54 0.0018 25.5 6.1 51 220-285 22-72 (98)
229 1oyi_A Double-stranded RNA-bin 42.6 31 0.0011 28.0 4.6 46 221-281 17-62 (82)
230 3by6_A Predicted transcription 42.5 29 0.001 29.3 4.7 64 215-293 13-77 (126)
231 3n71_A Histone lysine methyltr 42.3 54 0.0018 33.9 7.6 73 11-85 389-467 (490)
232 1u2w_A CADC repressor, cadmium 42.2 1.3E+02 0.0045 24.7 8.7 54 215-282 36-89 (122)
233 2qlz_A Transcription factor PF 41.9 99 0.0034 29.1 8.8 57 211-280 142-209 (232)
234 1wao_1 Serine/threonine protei 41.3 12 0.00042 37.8 2.6 67 12-82 3-69 (477)
235 1ylf_A RRF2 family protein; st 40.4 50 0.0017 28.4 6.0 61 220-296 15-75 (149)
236 1ouv_A Conserved hypothetical 39.9 1.9E+02 0.0065 25.3 17.2 63 12-81 3-70 (273)
237 3f6o_A Probable transcriptiona 39.0 42 0.0014 27.5 5.1 55 216-285 13-67 (118)
238 4ham_A LMO2241 protein; struct 38.9 39 0.0013 28.5 5.0 67 214-295 15-82 (134)
239 1ldj_A Cullin homolog 1, CUL-1 38.8 1.7E+02 0.0059 32.0 11.3 117 252-383 606-746 (760)
240 1sfu_A 34L protein; protein/Z- 38.5 40 0.0014 27.0 4.6 38 230-280 23-60 (75)
241 2b0l_A GTP-sensing transcripti 37.8 29 0.00099 28.5 3.8 57 222-292 29-86 (102)
242 3eqx_A FIC domain containing t 37.8 1.5E+02 0.005 29.8 9.8 38 230-280 305-342 (373)
243 1qbj_A Protein (double-strande 37.8 41 0.0014 26.7 4.6 46 358-405 32-77 (81)
244 1zu2_A Mitochondrial import re 37.0 78 0.0027 28.2 6.8 74 9-85 30-116 (158)
245 2ao9_A Phage protein; structur 36.3 24 0.00081 31.8 3.3 45 214-271 24-70 (155)
246 1iie_A Protein (HLA-DR antigen 36.1 42 0.0014 27.0 4.3 37 71-115 28-64 (75)
247 1y0u_A Arsenical resistance op 36.1 37 0.0013 26.6 4.1 57 218-294 28-84 (96)
248 2pjp_A Selenocysteine-specific 35.9 31 0.001 28.8 3.8 29 253-281 24-52 (121)
249 1r1u_A CZRA, repressor protein 34.8 55 0.0019 26.1 5.1 50 220-284 25-74 (106)
250 1xd7_A YWNA; structural genomi 34.5 60 0.0021 27.7 5.5 53 253-308 27-81 (145)
251 3neu_A LIN1836 protein; struct 34.2 41 0.0014 28.2 4.3 64 215-293 15-79 (125)
252 2pn6_A ST1022, 150AA long hypo 33.4 54 0.0018 27.6 5.0 51 222-286 4-57 (150)
253 4g1t_A Interferon-induced prot 33.3 3.1E+02 0.011 25.8 19.0 66 20-86 56-127 (472)
254 1qgp_A Protein (double strande 33.1 61 0.0021 25.2 4.9 38 358-396 36-73 (77)
255 4a0z_A Transcription factor FA 32.8 38 0.0013 30.9 4.1 41 220-273 10-50 (190)
256 1tbx_A ORF F-93, hypothetical 32.7 61 0.0021 25.2 4.9 62 253-325 26-91 (99)
257 2pmr_A Uncharacterized protein 31.3 58 0.002 26.7 4.5 33 12-44 36-68 (87)
258 2da7_A Zinc finger homeobox pr 30.4 44 0.0015 26.6 3.5 20 358-377 37-56 (71)
259 2lkp_A Transcriptional regulat 30.3 52 0.0018 26.5 4.2 46 221-281 32-77 (119)
260 2hr3_A Probable transcriptiona 30.0 77 0.0026 25.8 5.3 52 221-285 35-86 (147)
261 2oo2_A Hypothetical protein AF 29.8 64 0.0022 26.4 4.5 34 12-45 32-65 (86)
262 3qww_A SET and MYND domain-con 29.1 48 0.0017 33.7 4.6 35 11-45 378-412 (433)
263 3k69_A Putative transcription 29.0 61 0.0021 28.6 4.7 64 218-296 11-74 (162)
264 2vn2_A DNAD, chromosome replic 28.5 24 0.00082 29.8 1.9 33 253-285 55-87 (128)
265 2ek5_A Predicted transcription 28.4 57 0.002 27.6 4.3 63 215-292 6-69 (129)
266 2p5k_A Arginine repressor; DNA 28.2 1.1E+02 0.0036 21.8 5.2 39 221-272 4-47 (64)
267 3ffl_A Anaphase-promoting comp 27.9 1.4E+02 0.0047 27.2 6.9 63 15-77 63-146 (167)
268 3mv2_B Coatomer subunit epsilo 27.6 1.5E+02 0.0052 29.0 7.7 63 16-83 175-241 (310)
269 2gxg_A 146AA long hypothetical 27.4 91 0.0031 25.2 5.3 48 223-285 39-86 (146)
270 3qwp_A SET and MYND domain-con 26.5 58 0.002 32.9 4.6 36 10-45 366-401 (429)
271 2xze_A STAM-binding protein; h 26.3 2E+02 0.0069 25.1 7.6 63 15-85 40-112 (146)
272 2a9u_A Ubiquitin carboxyl-term 25.8 1.5E+02 0.0051 26.2 6.6 70 15-85 42-113 (144)
273 2vkj_A TM1634; membrane protei 25.8 75 0.0026 26.7 4.3 35 14-48 52-86 (106)
274 2ijq_A Hypothetical protein; s 25.3 3.6E+02 0.012 24.1 9.2 75 10-85 27-107 (161)
275 2frh_A SARA, staphylococcal ac 25.3 1.6E+02 0.0054 24.0 6.4 40 235-287 52-91 (127)
276 2a61_A Transcriptional regulat 24.5 1.1E+02 0.0036 24.8 5.2 53 223-289 35-87 (145)
277 2cg4_A Regulatory protein ASNC 24.3 74 0.0025 26.9 4.3 48 225-286 12-62 (152)
278 2fbh_A Transcriptional regulat 24.0 1.9E+02 0.0064 23.2 6.6 41 232-285 48-88 (146)
279 2qlz_A Transcription factor PF 24.0 3.5E+02 0.012 25.2 9.3 47 220-281 11-57 (232)
280 1nxh_A MTH396 protein; hypothe 23.5 18 0.00063 31.7 0.2 42 216-272 4-45 (126)
281 1tc3_C Protein (TC3 transposas 23.4 72 0.0025 20.6 3.3 21 253-273 25-45 (51)
282 3i4p_A Transcriptional regulat 23.3 83 0.0028 27.2 4.5 44 230-286 11-57 (162)
283 3bdd_A Regulatory protein MARR 23.3 1.1E+02 0.0037 24.6 5.0 50 223-286 33-82 (142)
284 3bpv_A Transcriptional regulat 23.2 1.1E+02 0.0038 24.4 5.0 43 234-289 41-83 (138)
285 1x2m_A LAG1 longevity assuranc 22.5 53 0.0018 25.3 2.6 20 357-376 32-51 (64)
286 2fa5_A Transcriptional regulat 22.5 1.9E+02 0.0065 23.8 6.5 39 234-285 61-99 (162)
287 3pqk_A Biofilm growth-associat 22.1 1.8E+02 0.006 22.7 5.9 60 218-292 20-79 (102)
288 3ech_A MEXR, multidrug resista 22.1 2.9E+02 0.0099 22.2 7.4 43 233-288 48-90 (142)
289 2fbi_A Probable transcriptiona 22.0 1.5E+02 0.0053 23.6 5.7 43 234-289 48-90 (142)
290 3nqo_A MARR-family transcripti 21.9 1.9E+02 0.0066 25.1 6.7 56 220-288 40-96 (189)
291 1i1g_A Transcriptional regulat 21.9 78 0.0027 26.1 3.9 43 224-280 7-49 (141)
292 3c7j_A Transcriptional regulat 21.9 75 0.0026 29.3 4.1 65 213-292 26-90 (237)
293 3deu_A Transcriptional regulat 21.7 1.9E+02 0.0066 24.5 6.5 51 224-287 56-106 (166)
294 1akh_A Protein (mating-type pr 21.6 57 0.002 23.7 2.6 19 358-376 37-55 (61)
295 2p5v_A Transcriptional regulat 21.6 82 0.0028 27.0 4.0 48 225-286 14-64 (162)
296 3rjv_A Putative SEL1 repeat pr 21.3 3.9E+02 0.013 22.9 8.6 31 14-44 124-158 (212)
297 3hsr_A HTH-type transcriptiona 21.2 1.2E+02 0.0041 24.7 4.9 50 224-287 39-88 (140)
298 2cyy_A Putative HTH-type trans 20.9 90 0.0031 26.4 4.1 50 223-286 9-61 (151)
299 3mn2_A Probable ARAC family tr 20.9 76 0.0026 25.1 3.5 39 218-272 3-41 (108)
300 1jgs_A Multiple antibiotic res 20.8 1.3E+02 0.0046 24.0 5.0 42 234-288 46-87 (138)
301 1b89_A Protein (clathrin heavy 20.7 5.5E+02 0.019 26.6 10.7 162 16-226 123-306 (449)
302 2v79_A DNA replication protein 20.6 68 0.0023 27.7 3.3 49 358-407 56-106 (135)
303 3aji_B S6C, proteasome (prosom 20.4 72 0.0025 24.4 3.1 40 220-272 3-46 (83)
304 1zu2_A Mitochondrial import re 20.4 41 0.0014 30.0 1.9 39 9-47 74-123 (158)
305 2hin_A GP39, repressor protein 20.3 42 0.0014 26.2 1.7 27 246-272 7-33 (71)
306 2da7_A Zinc finger homeobox pr 20.3 56 0.0019 26.0 2.4 21 253-273 36-56 (71)
307 1s3j_A YUSO protein; structura 20.2 1.7E+02 0.0058 23.9 5.6 40 233-285 48-87 (155)
308 2rdp_A Putative transcriptiona 20.2 1.3E+02 0.0045 24.4 4.9 41 234-287 54-94 (150)
No 1
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-43 Score=362.26 Aligned_cols=293 Identities=15% Similarity=0.132 Sum_probs=231.8
Q ss_pred eccCCCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 6 FFFQFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 6 ~~~~~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
.++..+.|++++++++|+||++||||++|.+++..++..|++.+.+ ++.+|+.+++.++.+||..+...++|++.+++.
T Consensus 122 ~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~k-id~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~ 200 (429)
T 4b4t_R 122 EDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAK-IDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK 200 (429)
T ss_dssp HCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred hhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc
Confidence 3466788899999999999999999999999999999999877655 999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhcCccchhhHHHHhcCCchhhhHHHhhhhHHHHHHHHHHHhccccccch-----
Q psy17612 86 GSANFESPLHLLQQRTWLIHWSLFVFFNHVKGRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNAL----- 160 (449)
Q Consensus 86 ~~~~~~~pl~~l~qR~WliHwsLf~ffn~~~g~~~~iD~F~~~~~yl~aIqt~cp~lLRYlvvA~Il~~~r~~~l----- 160 (449)
+++| .++..++...|++||+..-|. .|...|+|+|. +|....-.....++.|.+++++++.+|.+..
T Consensus 201 ~~d~--~~~~~lk~~~gl~~l~~r~f~---~Aa~~f~e~~~---t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~ 272 (429)
T 4b4t_R 201 GGDW--ERRNRYKTYYGIHCLAVRNFK---EAAKLLVDSLA---TFTSIELTSYESIATYASVTGLFTLERTDLKSKVID 272 (429)
T ss_dssp CCCT--HHHHHHHHHHHHGGGGTSCHH---HHHHHHHHHHH---HSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSS
T ss_pred CCCH--HHHHHHHHHHHHHHHHhChHH---HHHHHHHHHhc---cCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 7765 345567788899999876665 58999999998 6666655666689999999999998886543
Q ss_pred -HHHHHHHhhhccCCCchHHHHHHHHhhcccHHHHHHHHHHHhhhcccccchHHhHHHHHHHHHHHHHHHhhhhceeeEe
Q psy17612 161 -KDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISI 239 (449)
Q Consensus 161 -~dlv~vi~qE~~~Y~DpiT~fv~~lYv~fdf~~aq~~L~~~~~vl~~DfFL~~~~d~fvenaR~~ife~ycriy~~IsI 239 (449)
+++..++..++ .-+|+++|+.++|....++-++..+..+...+..|+||++|.++|.+++|..++.+||+||++|+|
T Consensus 273 ~~~~~~~l~~~p--~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l 350 (429)
T 4b4t_R 273 SPELLSLISTTA--ALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSL 350 (429)
T ss_dssp SHHHHHGGGSHH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEH
T ss_pred CHHHHhhccCCh--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeH
Confidence 33344443333 346689999999998777777777888899999999999999999999999999999999999999
Q ss_pred eccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeCCCC--CChHHHHHHhhhhhhhHHHHH
Q psy17612 240 QKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQP--LSPYQQLLEKIDTLSVRSEAL 317 (449)
Q Consensus 240 ~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~~~~--~s~Yqqviek~d~L~~R~q~L 317 (449)
+.||+.||+|++++|+||++||++|||+||||+++|+|++++|+ ++.||++|++||.|++|+|+|
T Consensus 351 -------------~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~~~~~y~~~i~~gd~Ll~riqkl 417 (429)
T 4b4t_R 351 -------------KSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQGDGLLTKLQKY 417 (429)
T ss_dssp -------------HHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-------------------------
T ss_pred -------------HHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986 589999999999999999999
Q ss_pred HHHHH
Q psy17612 318 QALIE 322 (449)
Q Consensus 318 ~~~i~ 322 (449)
+++|+
T Consensus 418 ~~~i~ 422 (429)
T 4b4t_R 418 GAAVR 422 (429)
T ss_dssp -----
T ss_pred HHHHh
Confidence 99985
No 2
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.97 E-value=1.2e-30 Score=267.77 Aligned_cols=267 Identities=13% Similarity=0.140 Sum_probs=207.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhcCC---CCC-CChH
Q psy17612 19 YKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGGS---ANF-ESPL 94 (449)
Q Consensus 19 yk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~~~---~~~-~~pl 94 (449)
.++|++|++.|+|.+|.+.+...+..|...|.+ +.+.+++++||.++ .+++++.++|..+.++. +.. .+|.
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~--~~llev~lle~~~~---~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDK--NLLVEVQLLESKTY---HALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT--HHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc--hhHHHHHHHHHHHH---HHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 389999999999999999999999988754433 69999999999999 88888899998888753 233 6675
Q ss_pred HHHHHHHHHHHHHHHHH-h--cCccchhhHHHHhcCCchhhhHHHhhhhHHHHHHHHHHHhccccccchHHHHHHHhhh-
Q psy17612 95 HLLQQRTWLIHWSLFVF-F--NHVKGRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQE- 170 (449)
Q Consensus 95 ~~l~qR~WliHwsLf~f-f--n~~~g~~~~iD~F~~~~~yl~aIqt~cp~lLRYlvvA~Il~~~r~~~l~dlv~vi~qE- 170 (449)
.+=.-| ..=|++.+ . ++..|...|+|+|. +|.+++......+++|+++|+|++.+|.+ ++ .++.++
T Consensus 178 i~a~i~---~~~Gi~~l~~~rdyk~A~~~F~eaf~---~f~~~~~~~~~~~lkYlvL~aLl~~~r~e-l~---~~l~~~~ 247 (394)
T 3txn_A 178 VQGALD---LQSGILHAADERDFKTAFSYFYEAFE---GFDSVDSVKALTSLKYMLLCKIMLGQSDD-VN---QLVSGKL 247 (394)
T ss_dssp HHHHHH---HHHHHHHHHTTSCHHHHHHHHHHHHH---HHTTTCHHHHHHHHHHHHHHHHHTTCGGG-HH---HHHHSHH
T ss_pred HHHHHH---HHhhHHHHHhccCHHHHHHHHHHHHh---cccccccHHHHHHHHHHHHHHHHcCCHHH-HH---HHhcccc
Confidence 322211 12244555 3 35679999999998 88877655556899999999999988733 22 344444
Q ss_pred ccCCCch----HHHHHHHHhhcccHHHHHHHHHHHhhhcccccchHHhHHHHHHHHHHHHHHHhhhhceeeEeecccccc
Q psy17612 171 SYTYKDP----ITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVI 246 (449)
Q Consensus 171 ~~~Y~Dp----iT~fv~~lYv~fdf~~aq~~L~~~~~vl~~DfFL~~~~d~fvenaR~~ife~ycriy~~IsI~~~~~~~ 246 (449)
...|.+| +.+++ +.|.+.|+..|++.|..++..+..|+||.+|.+++.+++|...+.++++||++|++
T Consensus 248 ~~~~~~pei~~l~~L~-~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl------- 319 (394)
T 3txn_A 248 AITYSGRDIDAMKSVA-EASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQV------- 319 (394)
T ss_dssp HHTTCSHHHHHHHHHH-HHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEH-------
T ss_pred ccccCCccHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeH-------
Confidence 3457777 56677 66999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeCCCC--CChHHHHHHhhhhhhhHH
Q psy17612 247 DKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQP--LSPYQQLLEKIDTLSVRS 314 (449)
Q Consensus 247 ~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~~~~--~s~Yqqviek~d~L~~R~ 314 (449)
+.||+.||+|++++|.+|+++|++|+|+|+||+++|+|++.+++ +..|++.++.+..+..-+
T Consensus 320 ------~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~~~y~~ale~l~~ls~vV 383 (394)
T 3txn_A 320 ------AHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVV 383 (394)
T ss_dssp ------HHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC---------------------
T ss_pred ------HHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCcchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986 688999998554444433
No 3
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=7.6e-22 Score=191.21 Aligned_cols=279 Identities=13% Similarity=0.105 Sum_probs=197.0
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcc--hhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhcCCC
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSD--RHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGGSA 88 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~--~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~~~~ 88 (449)
+.........+|+++++.|+|+.|.+++......+...+ ......+....++-...+||+.|...+.++.......
T Consensus 131 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-- 208 (434)
T 4b4t_Q 131 VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI-- 208 (434)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--
T ss_pred cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC--
Confidence 344567788999999999999999999999887775332 3346677777777778889999999998888776652
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh-cCccchhhHHHHhcCCchhhhHH----HhhhhHHHHHHHHHHHhccccccchHHH
Q psy17612 89 NFESPLHLLQQRTWLIHWSLFVFF-NHVKGRDLIIDMFLNRPHYLNAI----QTMCPHILRYLATAVIINRSKRNALKDL 163 (449)
Q Consensus 89 ~~~~pl~~l~qR~WliHwsLf~ff-n~~~g~~~~iD~F~~~~~yl~aI----qt~cp~lLRYlvvA~Il~~~r~~~l~dl 163 (449)
.+|. .++.+.+.....++... ++..+...+.++|. +|.... ...+.++++|.+++.+.+..+..... +
T Consensus 209 --~~~~-~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~ 281 (434)
T 4b4t_Q 209 --YCPT-QTVAELDLMSGILHCEDKDYKTAFSYFFESFE---SYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKN-I 281 (434)
T ss_dssp --CCCH-HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH---HHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHH-H
T ss_pred --CCch-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHh-H
Confidence 1221 12333444333333222 34567777888887 444432 23455889999999988754422211 1
Q ss_pred HHHHhhhccCCC-ch----HHHHHHHHhhcccHHHHHHHHHHHhhhcccccchHHhHHHHHHHHHHHHHHHhhhhceeeE
Q psy17612 164 VKVIQQESYTYK-DP----ITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCIS 238 (449)
Q Consensus 164 v~vi~qE~~~Y~-Dp----iT~fv~~lYv~fdf~~aq~~L~~~~~vl~~DfFL~~~~d~fvenaR~~ife~ycriy~~Is 238 (449)
.. .++...|. +| +..++ ..|...++..+++.+......+..|+|+..|.+.+.+++|...+.+++++|++|+
T Consensus 282 ~~--~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~ 358 (434)
T 4b4t_Q 282 LN--AKYTKETYQSRGIDAMKAVA-EAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVE 358 (434)
T ss_dssp HH--CSSSSTTCCCHHHHHHHHHH-HHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEE
T ss_pred HH--HHHHHHHhcchhhhHHHHHH-HHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11 33333333 33 45555 6688899999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeCCCC--CChHHHHHHhhhhhhhHH
Q psy17612 239 IQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQP--LSPYQQLLEKIDTLSVRS 314 (449)
Q Consensus 239 I~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~~~~--~s~Yqqviek~d~L~~R~ 314 (449)
+ +.||+.||++++++|++|+++|.+|+|+||||+++|+|++..++ ...|++.++..+.|..-+
T Consensus 359 l-------------~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~~~~~~~~l~~~~~l~~~v 423 (434)
T 4b4t_Q 359 I-------------SHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVGQLNKVV 423 (434)
T ss_dssp H-------------HHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEETTTTEEECC-----------------------
T ss_pred H-------------HHHHHHhCcCHHHHHHHHHHHHhCCCcceecccccCeEeeCCCcchhHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999999999999998775 477888887666554433
No 4
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.1e-17 Score=172.67 Aligned_cols=289 Identities=13% Similarity=0.127 Sum_probs=191.5
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc--chhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhcCC
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTS--DRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGGS 87 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~--~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~~~ 87 (449)
++.|-..--.++|+++.+.|+|.+|.++|..+..-|.+. ..-++..+...+++-+...||..|..-++|++.-...
T Consensus 132 lE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~-- 209 (445)
T 4b4t_P 132 VEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK-- 209 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc--
Confidence 345555556889999999999999999999987665432 2335788888888888889999999999998765554
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh--cCccchhhHHHHhcCCchhhhHH-HhhhhHHHHHHHHHHHhccccccchHHHH
Q psy17612 88 ANFESPLHLLQQRTWLIHWSLFVFF--NHVKGRDLIIDMFLNRPHYLNAI-QTMCPHILRYLATAVIINRSKRNALKDLV 164 (449)
Q Consensus 88 ~~~~~pl~~l~qR~WliHwsLf~ff--n~~~g~~~~iD~F~~~~~yl~aI-qt~cp~lLRYlvvA~Il~~~r~~~l~dlv 164 (449)
...+|.-++.-+.-. +.+... ++..+...|.+.|. +|.... ...+..+|+|.+++.|++... +...+++
T Consensus 210 -~~~~~~lk~~~~~~~---~~~~~~e~~y~~a~~~y~e~~~---~~~~~~d~~~~~~~L~~~v~~~iLa~~~-~~~~~ll 281 (445)
T 4b4t_P 210 -NPKYESLKLEYYNLL---VKISLHKREYLEVAQYLQEIYQ---TDAIKSDEAKWKPVLSHIVYFLVLSPYG-NLQNDLI 281 (445)
T ss_dssp -SSCCHHHHHHHHHHH---HHHHHHHCCHHHHHHHHHHHHH---HHHHHSCHHHHHHHHHHHHHHHHHSSCS-STTHHHH
T ss_pred -cCCcHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHh---cccccCCHHHHHHHHHHHHHHHHhCCCC-chHHHHH
Confidence 223443222211111 111111 23356677788877 443332 223457899999998887533 4445555
Q ss_pred HHHhhhccCCC--chHHHHHHHHhhcccHHHHHHHHHHHhhhcccccch------HHhHHHHHHHHHHHHHHHhhhhcee
Q psy17612 165 KVIQQESYTYK--DPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFL------VACLDEFVENARLMIFETFCRIHQC 236 (449)
Q Consensus 165 ~vi~qE~~~Y~--DpiT~fv~~lYv~fdf~~aq~~L~~~~~vl~~DfFL------~~~~d~fvenaR~~ife~ycriy~~ 236 (449)
.-+....+ .+ +++..++ .+|.+-+...+...+...+..+..|.+. ..|...+.++++...+..+.++|++
T Consensus 282 ~~~~~~~~-~~~l~~~~~L~-k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~ 359 (445)
T 4b4t_P 282 HKIQNDNN-LKKLESQESLV-KLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSR 359 (445)
T ss_dssp HSHHHHSS-CHHHHHHHHHH-HHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred HHHhhccc-ccccHHHHHHH-HHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhce
Confidence 43333221 22 3466777 6688888777888888888889888876 7899999999999999999999999
Q ss_pred eEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeCCCC--CChHHHHHHhhhhhhhHH
Q psy17612 237 ISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQP--LSPYQQLLEKIDTLSVRS 314 (449)
Q Consensus 237 IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~~~~--~s~Yqqviek~d~L~~R~ 314 (449)
|++ +.||+.||+|++++|++|+++|.+|+|.||||+++|+|+..++. +.+.++-....+.|+..+
T Consensus 360 I~l-------------~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~~~~~l~~W~~~i~~l~~~v 426 (445)
T 4b4t_P 360 ITL-------------LRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHI 426 (445)
T ss_dssp EEH-------------HHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC------------------------
T ss_pred eeH-------------HHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCChHHHHHHHHHHHHHHHHHH
Confidence 999 99999999999999999999999999999999999999998774 345666666777777777
Q ss_pred HHHHHHHHH
Q psy17612 315 EALQALIER 323 (449)
Q Consensus 315 q~L~~~i~~ 323 (449)
++.+..|.+
T Consensus 427 ~k~~~lI~k 435 (445)
T 4b4t_P 427 ETIGHLITK 435 (445)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 777777754
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=4.5e-15 Score=151.22 Aligned_cols=274 Identities=12% Similarity=0.070 Sum_probs=166.6
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCC-------------cchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhcCCCCC
Q psy17612 24 FRYECGNYSITTSYLYFYLLVMPT-------------SDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGGSANF 90 (449)
Q Consensus 24 f~y~~GdY~~A~~~L~~~~~l~~~-------------~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~~~~~~ 90 (449)
....+.|.++|.++|......... .....+-+...+.+.-+..+|-+.|.+.+++++..++..+++.
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 345778999999999877655420 0111233333344445566899999999999999999865553
Q ss_pred CChHHHHHHHHHHHHHHHHHHhcCccchhhHHHHhcCCchhhhHHHh------hhhHHHHHHHHHHHhccccccchHHHH
Q psy17612 91 ESPLHLLQQRTWLIHWSLFVFFNHVKGRDLIIDMFLNRPHYLNAIQT------MCPHILRYLATAVIINRSKRNALKDLV 164 (449)
Q Consensus 91 ~~pl~~l~qR~WliHwsLf~ffn~~~g~~~~iD~F~~~~~yl~aIqt------~cp~lLRYlvvA~Il~~~r~~~l~dlv 164 (449)
|.-+.. .|++.--++........+..-++ .|+.++.. ..-..+.|.++.+++..++..+|.+++
T Consensus 165 --~~v~~~-----~y~~~~~~~~~~~~~a~~y~~~l---~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL 234 (393)
T 4b4t_O 165 --LRITNS-----FYSTNSQYFKFKNDFNSFYYTSL---LYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELL 234 (393)
T ss_dssp --SHHHHH-----HHHHHHHHHHHTTCHHHHHHHHH---HHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHH
T ss_pred --HHHHHH-----HHHHHHHHHHHhhhHHHHHHHHH---HHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHh
Confidence 221111 22222222221111222222222 23333321 112567788888888888888898877
Q ss_pred H--HHhhhcc-CCCchHHHHHHHHhhcccHHHHHHHHHHHhhhcccccchHHhHHHHHHHHHHHHHHHhh--hhceeeEe
Q psy17612 165 K--VIQQESY-TYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFC--RIHQCISI 239 (449)
Q Consensus 165 ~--vi~qE~~-~Y~DpiT~fv~~lYv~fdf~~aq~~L~~~~~vl~~DfFL~~~~d~fvenaR~~ife~yc--riy~~IsI 239 (449)
. .++.-.. +=..++.+++ .+|..-|+.++++.++... ...++|..|.....+.+|++.+.+.+ ++|++|+.
T Consensus 235 ~~p~i~~L~~~~~~~~l~~Ll-~~f~~g~~~~f~~~~~~~~---~~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f 310 (393)
T 4b4t_O 235 HHPIMETIVNDSNYDWLFQLL-NALTVGDFDKFDSLIKVQI---SKIPILAQHESFLRQKICLMTLIETVFVKNIRMLSF 310 (393)
T ss_dssp HSCCTTSSCSSSSTTHHHHHH-HHHHHTCHHHHHHHCCHHH---HHSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEH
T ss_pred CChHHHHhhcCCchHHHHHHH-HHHhcCCHHHHHHHHHHhh---hhCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcH
Confidence 6 2222111 1114588888 6788899999887665543 45689999999999999999998866 78899999
Q ss_pred eccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeCCCC-----CChHHHHHHhhhhhhhHH
Q psy17612 240 QKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQP-----LSPYQQLLEKIDTLSVRS 314 (449)
Q Consensus 240 ~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~~~~-----~s~Yqqviek~d~L~~R~ 314 (449)
+.||+.|+++++|+|.|++++|+.|+|+||||+++|+|+++... +..-..+.++.+.+..++
T Consensus 311 -------------~~ia~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~~L~~W~~~v 377 (393)
T 4b4t_O 311 -------------EDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWNDQV 377 (393)
T ss_dssp -------------HHHHHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC---------------------------
T ss_pred -------------HHHHHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998642 345566777788888999
Q ss_pred HHHHHHHHHH
Q psy17612 315 EALQALIERK 324 (449)
Q Consensus 315 q~L~~~i~~~ 324 (449)
+.+...|+..
T Consensus 378 ~~l~~~ve~~ 387 (393)
T 4b4t_O 378 EKLGKKMEAR 387 (393)
T ss_dssp ----------
T ss_pred HHHHHHHHHh
Confidence 9988888765
No 6
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.53 E-value=9.2e-14 Score=130.55 Aligned_cols=168 Identities=15% Similarity=0.238 Sum_probs=133.1
Q ss_pred HHHHHHHHHHhc--CccchhhHHHHhcCCchhhhHHHhhhhHHHHHHHHHHHhccccccchHHHHHHHhhhccCCCchHH
Q psy17612 102 WLIHWSLFVFFN--HVKGRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPIT 179 (449)
Q Consensus 102 WliHwsLf~ffn--~~~g~~~~iD~F~~~~~yl~aIqt~cp~lLRYlvvA~Il~~~r~~~l~dlv~vi~qE~~~Y~DpiT 179 (449)
+.=+-+.+.+++ +.+|.+.|.++|.+ +..+-...--.+|+||+.+.|++.+ ....+ +. ++|.. .|++
T Consensus 16 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~---~~~~~~~~k~~IL~yLIp~~Ll~G~-iP~~~-ll-----~~~~~-~~y~ 84 (203)
T 3t5x_A 16 YKYYVGRKAMFDSDFKQAEEYLSFAFEH---CHRSSQKNKRMILIYLLPVKMLLGH-MPTVE-LL-----KKYHL-MQFA 84 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHHHHHTTC-EECHH-HH-----HHTTC-GGGH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHH---CCHhHHHHHHHHHHHHHHHHHHcCC-CCCHH-Hh-----hhCch-hHHH
Confidence 334446666664 67899999999994 2222122333799999999999875 44443 22 22222 5788
Q ss_pred HHHHHHhhcccHHHHHHHHHHHhhhcccccchHHhHHHHHHHHHHHHHHHhhh------hceeeEeeccccccccccchh
Q psy17612 180 EFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCR------IHQCISIQKESNVIDKIFDGQ 253 (449)
Q Consensus 180 ~fv~~lYv~fdf~~aq~~L~~~~~vl~~DfFL~~~~d~fvenaR~~ife~ycr------iy~~IsI~~~~~~~~~~~~~~ 253 (449)
.++ .++..-|+..|.+.|.+.+ |+|+..++-..++.+|..++.+.+| +|++|++ +
T Consensus 85 ~L~-~Avr~Gdl~~f~~~l~~~~-----~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l-------------~ 145 (203)
T 3t5x_A 85 EVT-RAVSEGNLLLLHEALAKHE-----AFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSL-------------D 145 (203)
T ss_dssp HHH-HHHHHTCHHHHHHHHHHTH-----HHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEH-------------H
T ss_pred HHH-HHHHhCCHHHHHHHHHHhH-----HHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccH-------------H
Confidence 888 6689999999999999876 5788888777899999999999998 7999999 9
Q ss_pred hHHhhcC------CCHHHHHHHHHHHHHcccccceecccCCEEEeCCCCCCh
Q psy17612 254 MLASKLN------MGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSP 299 (449)
Q Consensus 254 ~LA~~Ln------ms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~~~~~s~ 299 (449)
.++.+|+ ++++|+|++++++|++|.++|+||.++|+|+.+.+.+.|
T Consensus 146 ~i~~~l~~~~~~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~pFP 197 (203)
T 3t5x_A 146 AFLVALKFMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQNPFP 197 (203)
T ss_dssp HHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSCSSC
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHcCceEEEEcccccEEEECCCCCCC
Confidence 9999995 589999999999999999999999999999998876543
No 7
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.24 E-value=5.1e-12 Score=104.19 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=53.0
Q ss_pred HhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeCCCCC
Q psy17612 229 TFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPL 297 (449)
Q Consensus 229 ~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~~~~~ 297 (449)
+|.++|++|+| +.||+.||++++++|++|+++|.+++|+||||+++|+|++.++.+
T Consensus 23 ~is~~Y~~Isl-------------~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~ 78 (84)
T 1ufm_A 23 SASKLYNNITF-------------EELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREA 78 (84)
T ss_dssp HHHHSCSEEEH-------------HHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred HHHHhcCeeeH-------------HHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCccc
Confidence 57789999999 999999999999999999999999999999999999999988753
No 8
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=98.98 E-value=2.6e-09 Score=111.60 Aligned_cols=168 Identities=11% Similarity=0.072 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHhc--CccchhhHHHHhcC-CchhhhH----HHhhhhHHHHHHHHHHHhccccccchHHHHHHHhhhccC
Q psy17612 101 TWLIHWSLFVFFN--HVKGRDLIIDMFLN-RPHYLNA----IQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYT 173 (449)
Q Consensus 101 ~WliHwsLf~ffn--~~~g~~~~iD~F~~-~~~yl~a----Iqt~cp~lLRYlvvA~Il~~~r~~~l~dlv~vi~qE~~~ 173 (449)
+++=+-|-+.+++ +.+|.+.|..+|.+ -|. ++ -+...-.||+|+|.+.|++.+- |=+.+ +++ ++.
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~--~~~~~~~~~n~~~ILkyLIpv~LLlG~~--P~~~l---l~k-~~~ 292 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL--PLTNQAITRNGTRILNYMIPTGLILGKM--VKWGP---LRP-FLS 292 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHTTCC--BCHHH---HGG-GSC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc--cccchhhhhHHHHHHHHHHHHHHHcCCC--CCHHH---Hcc-cch
Confidence 3344446666663 67888999999983 111 10 1122235999999999998643 22222 122 111
Q ss_pred CC-ch-HHHHHHHHhhcccHHHHHHHHHHHhhhcccccchHHhH-HHHHHHHHHHHHHHhhh--------hc--eeeEee
Q psy17612 174 YK-DP-ITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACL-DEFVENARLMIFETFCR--------IH--QCISIQ 240 (449)
Q Consensus 174 Y~-Dp-iT~fv~~lYv~fdf~~aq~~L~~~~~vl~~DfFL~~~~-d~fvenaR~~ife~ycr--------iy--~~IsI~ 240 (449)
+. .| .+.++ .++..-|+..|.+.|.+.++ +|+..++ --+++.+|..++.+.+| +| ++|++
T Consensus 293 ~~L~~~y~~L~-~AVr~Gdl~~F~~~L~~~~~-----~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l- 365 (455)
T 3t5v_B 293 QETIDNWSVLY-KHVRYGNIQGVSLWLRQNER-----HLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPY- 365 (455)
T ss_dssp HHHHHHHHHHH-HHHHHTCHHHHHHHHHHTHH-----HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEH-
T ss_pred HHHHHHHHHHH-HHHHhCCHHHHHHHHHHhHH-----HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeH-
Confidence 12 34 66777 56899999999999999876 6666676 66777788876665554 47 79999
Q ss_pred ccccccccccchhhHHhhcC---------------------CCHHHHHHHHHHHHHcccccceecccCCEEEeCCC
Q psy17612 241 KESNVIDKIFDGQMLASKLN---------------------MGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQ 295 (449)
Q Consensus 241 ~~~~~~~~~~~~~~LA~~Ln---------------------ms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~~~ 295 (449)
+.++.+|+ ++.+|+|++++++|++|.++|+||.++|+|+.+..
T Consensus 366 ------------~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 366 ------------SLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp ------------HHHHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCC
T ss_pred ------------HHHHHHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCC
Confidence 99999997 68999999999999999999999999999999988
No 9
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.72 E-value=6.2e-08 Score=102.85 Aligned_cols=165 Identities=15% Similarity=0.127 Sum_probs=121.2
Q ss_pred HHHHHHHh--cCccchhhHHHHhcCCchhhhHHHhhhhHHHHHHHHHHHhccc--cccchHHHHHHHhhhccCCC---ch
Q psy17612 105 HWSLFVFF--NHVKGRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRS--KRNALKDLVKVIQQESYTYK---DP 177 (449)
Q Consensus 105 HwsLf~ff--n~~~g~~~~iD~F~~~~~yl~aIqt~cp~lLRYlvvA~Il~~~--r~~~l~dlv~vi~qE~~~Y~---Dp 177 (449)
|-+-..++ ++..|.+.|..+|..-|.--.+. -.--.+++|+|++.++... .+..|. | +.++ .|
T Consensus 275 Y~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~-gfr~~a~K~lI~V~LLlG~iP~r~lf~-------q--~~l~~~L~p 344 (523)
T 4b4t_S 275 YLSKINAIQLDYSTANEYIIAAIRKAPHNSKSL-GFLQQSNKLHCCIQLLMGDIPELSFFH-------Q--SNMQKSLLP 344 (523)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCS-HHHHHHHHHHHHHHHHHTCCCCHHHHT-------T--TSCHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCcchhhh-hHHHHHHHHHHhHHhhcCCCCChHHhh-------c--hhHHHHHHH
Confidence 33444444 35677788888887422110000 0112489999999999753 222222 2 2233 46
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHhhhcccccchHHhHHHHHHHHHHHHHHHhhhhceeeEeeccccccccccchhhHHh
Q psy17612 178 ITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLAS 257 (449)
Q Consensus 178 iT~fv~~lYv~fdf~~aq~~L~~~~~vl~~DfFL~~~~d~fvenaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~ 257 (449)
..+++ .+|..-|.+.|...|...+..+..|.- ...+.....++..-.+....++|.+|++ ..+|.
T Consensus 345 Y~~Lv-~Avr~GdL~~F~~~L~~h~~~F~~Dgt-y~LI~rLr~~vir~~irkis~~YsrIsL-------------~dIa~ 409 (523)
T 4b4t_S 345 YYHLT-KAVKLGDLKKFTSTITKYKQLLLKDDT-YQLCVRLRSNVIKTGIRIISLTYKKISL-------------RDICL 409 (523)
T ss_dssp HHHHH-HHHHHTCHHHHHHHHHHTHHHHHHTTC-THHHHHHHHHHHHHHHHHSCCCSSEECH-------------HHHHH
T ss_pred HHHHH-HHHHcCCHHHHHHHHHHhcceeccCCh-hHHHHHHHHHHHHHHHHHHHHHHhcccH-------------HHHHH
Confidence 67777 668999999999999999999888843 3456666677777778888899999999 99999
Q ss_pred hcCCC-HHHHHHHHHHHHHcccccceecccCCEEEeCC
Q psy17612 258 KLNMG-TDEAECWIVNLIRNARLDAKIDSKLGHVIMGT 294 (449)
Q Consensus 258 ~Lnms-~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~~ 294 (449)
+|+++ ++++|+.++++|++|.|+|.||.++|.|+...
T Consensus 410 kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~ske 447 (523)
T 4b4t_S 410 KLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTE 447 (523)
T ss_dssp HHHHHHSSCHHHHHHHHHHHTSSCCEECTTTCCEECCS
T ss_pred HhCCCCHHHHHHHHHHHHHcCCceEEEecCCCEEEeCc
Confidence 99985 78899999999999999999999999998643
No 10
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.60 E-value=1e-05 Score=78.00 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=38.6
Q ss_pred HHHhhcCCChHHHHHHHHHHhhhcccccccccCCCeEEecCCC--CChhHHHHHhhhccc
Q psy17612 358 MLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQP--LSPYQQLLEKIDTLS 415 (449)
Q Consensus 358 ~la~kLnm~~~eaE~WIvnLIr~~~ldAKIDs~~~~v~m~~~~--~svyqqviektk~l~ 415 (449)
.+|+.||++++++|+|++++|++.+++||||...|.|++..++ ...|+++++..+.+.
T Consensus 361 ~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~~~~~~~~l~~~~~l~ 420 (434)
T 4b4t_Q 361 HISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVGQLN 420 (434)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTSSCCEEETTTTEEECC--------------------
T ss_pred HHHHHhCcCHHHHHHHHHHHHhCCCcceecccccCeEeeCCCcchhHHHHHHHHHHHHHH
Confidence 5699999999999999999999999999999999999997654 467999988877664
No 11
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.56 E-value=3.1e-08 Score=101.39 Aligned_cols=69 Identities=20% Similarity=0.213 Sum_probs=39.6
Q ss_pred HHHhhcCCChHHHHHHHHHHhhhcccccccccCCCeEEecCCC--CChhHHHHHhhhcccchHHHHHHHHH
Q psy17612 358 MLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQP--LSPYQQLLEKIDTLSVRSEALQALIE 426 (449)
Q Consensus 358 ~la~kLnm~~~eaE~WIvnLIr~~~ldAKIDs~~~~v~m~~~~--~svyqqviektk~l~~rt~~l~~~~~ 426 (449)
.||+.||++.+++|+|+++||.+++++||||+.+|.|++..+. .+.||+++++...|..|-+.|...|.
T Consensus 352 ~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~~~~~y~~~i~~gd~Ll~riqkl~~~i~ 422 (429)
T 4b4t_R 352 SMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQGDGLLTKLQKYGAAVR 422 (429)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC------------------------------
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5699999999999999999999999999999999999998764 48999999999999999999877764
No 12
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.48 E-value=7.6e-06 Score=84.11 Aligned_cols=64 Identities=16% Similarity=0.319 Sum_probs=42.8
Q ss_pred hchhhhHHHHHHhhcCCChHHHHHHHHHHhhhcccccccccCCCeEEecCCC--CChhHHHHHhhhcccc
Q psy17612 349 KADLNVITIMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQP--LSPYQQLLEKIDTLSV 416 (449)
Q Consensus 349 ~~~~~~~~~~la~kLnm~~~eaE~WIvnLIr~~~ldAKIDs~~~~v~m~~~~--~svyqqviektk~l~~ 416 (449)
.+.+..+ |+.||++++++|++++++|++++++|+||..+|.|++..++ .+.|++++|.++.++-
T Consensus 316 rIsl~~i----A~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~~~y~~ale~l~~ls~ 381 (394)
T 3txn_A 316 RVQVAHV----AESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGK 381 (394)
T ss_dssp EEEHHHH----HHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC-------------------
T ss_pred eeeHHHH----HHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCcchhhHHHHHHHHHHHHHH
Confidence 4555555 99999999999999999999999999999999999998875 7789999998776653
No 13
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=98.07 E-value=4e-06 Score=68.94 Aligned_cols=48 Identities=27% Similarity=0.285 Sum_probs=42.6
Q ss_pred hHHH-HHHhhcCCChHHHHHHHHHHhhhcccccccccCCCeEEecCCCC
Q psy17612 354 VITI-MLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPL 401 (449)
Q Consensus 354 ~~~~-~la~kLnm~~~eaE~WIvnLIr~~~ldAKIDs~~~~v~m~~~~~ 401 (449)
.|+. .||+.|+++++++|+||+++|.+.++.||||..+|+|++..+.+
T Consensus 30 ~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~ 78 (84)
T 1ufm_A 30 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREA 78 (84)
T ss_dssp EEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred eeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCccc
Confidence 3444 77999999999999999999999999999999999999976543
No 14
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=97.88 E-value=0.00012 Score=67.37 Aligned_cols=129 Identities=12% Similarity=0.114 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhccccccchHHHHH--HHhhhccCCCchHHHHHHHHhhcccHHHHHHHHHHHhhhcccccchHHhHHHHH
Q psy17612 142 ILRYLATAVIINRSKRNALKDLVK--VIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFV 219 (449)
Q Consensus 142 lLRYlvvA~Il~~~r~~~l~dlv~--vi~qE~~~Y~DpiT~fv~~lYv~fdf~~aq~~L~~~~~vl~~DfFL~~~~d~fv 219 (449)
...=++++++... ..-.|.+++. .|++-..+=..++-+++ .+|..-+++++... . + +-+-|. +...
T Consensus 25 ~a~~li~~Al~~p-~vf~F~eLL~~p~v~~L~~~~~~~~~~LL-~iF~~G~~~~y~~~-~---~---~~p~L~---~~~~ 92 (169)
T 3chm_A 25 ALGPLIIEATSHP-SLFAFSEILALPNVAQLEGTTDSVYLDLL-RLFAHGTWGDYKCN-A---T---RLPHLS---PDQI 92 (169)
T ss_dssp GHHHHHHHHHHCT-TCCCCHHHHTCHHHHTTTTSTTHHHHHHH-HHHHHCCHHHHHHH-G---G---GSCCCC---HHHH
T ss_pred HHHHHHHHHhcCC-CeeehHHHhCChHHHHhcCCChhHHHHHH-HHHhcCCHHHHHHh-H---H---hCcchH---HHHH
Confidence 4444555666653 3344666653 44433211123466666 55666666665542 1 1 112243 6777
Q ss_pred HHHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCC-HHHHHHHHH-HHHHcccccceecccCCEEEeCCC
Q psy17612 220 ENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMG-TDEAECWIV-NLIRNARLDAKIDSKLGHVIMGTQ 295 (449)
Q Consensus 220 enaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms-~~e~E~wIV-nlIr~~rLdaKIDs~~G~V~m~~~ 295 (449)
+-+|++.+-+.|.-++.|+. +.+++.++++ .+++|.|++ +.|+.|-++||||+++++|+++.-
T Consensus 93 ~KlrlLtL~sLa~~~~~lsy-------------~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~ 157 (169)
T 3chm_A 93 LKLKQLTVLTLAESNKVLPY-------------DTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFA 157 (169)
T ss_dssp HHHHHHHHHHHHHHCSEEEH-------------HHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCcCH-------------HHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEee
Confidence 99999999999988999999 9999999999 999999999 999999999999999999998753
No 15
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=97.11 E-value=0.026 Score=53.47 Aligned_cols=71 Identities=14% Similarity=0.072 Sum_probs=54.9
Q ss_pred HHhhcccHHHHHHHHHHHhhhcccccchHHhHHHHHHHHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCC-C
Q psy17612 184 HLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNM-G 262 (449)
Q Consensus 184 ~lYv~fdf~~aq~~L~~~~~vl~~DfFL~~~~d~fvenaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnm-s 262 (449)
.....-+|..+.+.+.... ..+....++-|+..+|..+....++.|++|++ +.+++.||+ |
T Consensus 143 ~al~~GnY~kff~l~~~~p-----~~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l-------------~~~~~~L~f~s 204 (229)
T 4b0z_A 143 QNVMEGAFDKVASMIRSCN-----FPEFSYFMKIVMSMVRNEIATCAEKVYSEIPL-------------SNATSLLYLEN 204 (229)
T ss_dssp HHHHTTCHHHHHHHHHTCC-----CGGGHHHHHHHHHHHHHHHHHHHHHHCSEEEH-------------HHHHHHTTCSS
T ss_pred HHHHcCCHHHHHHHHhcCc-----cchHHHHHHHHHHHHHHHHHHHHHHHcCCCCH-------------HHHHHHhCCCC
Confidence 3345566777777665432 12334457889999999999999999999999 999999999 5
Q ss_pred HHHHHHHHHH
Q psy17612 263 TDEAECWIVN 272 (449)
Q Consensus 263 ~~e~E~wIVn 272 (449)
+++++.++..
T Consensus 205 ~~e~~~f~~~ 214 (229)
T 4b0z_A 205 TKETEKLAEE 214 (229)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7788888776
No 16
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0013 Score=66.79 Aligned_cols=71 Identities=14% Similarity=0.145 Sum_probs=38.0
Q ss_pred HHHhhcCCChHHHHHHHHHHhhhcccccccccCCCeEEecCCCCChh-----HHHHHhhhcccchHHHHHHHHHHH
Q psy17612 358 MLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPY-----QQLLEKIDTLSVRSEALQALIERK 428 (449)
Q Consensus 358 ~la~kLnm~~~eaE~WIvnLIr~~~ldAKIDs~~~~v~m~~~~~svy-----qqviektk~l~~rt~~l~~~~~~~ 428 (449)
.+|+.|+++.+|+|.|+++.|+.+++.||||..+|+|+++...|-+- +.+.++.....-+-+.+...|+..
T Consensus 312 ~ia~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~~L~~W~~~v~~l~~~ve~~ 387 (393)
T 4b4t_O 312 DISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWNDQVEKLGKKMEAR 387 (393)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC-------------------------------------
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999986554321 223334444444445555555443
No 17
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.0019 Score=66.58 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=37.8
Q ss_pred HHHhhcCCChHHHHHHHHHHhhhcccccccccCCCeEEecCCC
Q psy17612 358 MLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQP 400 (449)
Q Consensus 358 ~la~kLnm~~~eaE~WIvnLIr~~~ldAKIDs~~~~v~m~~~~ 400 (449)
.||+.||++++++|+|++++|.++++.||||-..|.|+.+.+.
T Consensus 364 ~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~ 406 (445)
T 4b4t_P 364 RLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPK 406 (445)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC----
T ss_pred HHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCC
Confidence 6799999999999999999999999999999999999887653
No 18
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=96.12 E-value=0.0048 Score=57.59 Aligned_cols=50 Identities=20% Similarity=0.367 Sum_probs=41.0
Q ss_pred hhchhhhHHHHHHhhc------CCChHHHHHHHHHHhhhcccccccccCCCeEEecCCCC
Q psy17612 348 SKADLNVITIMLASKL------NMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPL 401 (449)
Q Consensus 348 ~~~~~~~~~~~la~kL------nm~~~eaE~WIvnLIr~~~ldAKIDs~~~~v~m~~~~~ 401 (449)
+.+.+..+ +.+| +++.||+|.+++|||+++.++|+||.+.|+||++.+.|
T Consensus 140 ~rI~l~~i----~~~l~~~~~~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~p 195 (203)
T 3t5x_A 140 HQLSLDAF----LVALKFMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQNP 195 (203)
T ss_dssp SEEEHHHH----HHHHHHTTCTTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSCS
T ss_pred CcccHHHH----HHHHHhcCCCCCCHHHHHHHHHHHHHcCceEEEEcccccEEEECCCCC
Confidence 35666666 4455 46899999999999999999999999999999976543
No 19
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.00 E-value=0.4 Score=40.30 Aligned_cols=163 Identities=11% Similarity=-0.001 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhcCCCCCCCh
Q psy17612 14 MMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGGSANFESP 93 (449)
Q Consensus 14 ~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~~~~~~~~p 93 (449)
.....+.+|..++..|+|+.|.+++.......|.. ..++...-.+-...++++.|.+...++.+.-.. ++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~------~~ 73 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN----VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT------SA 73 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch------hH
Confidence 34567899999999999999999999988887643 334444444555678999998888877554332 22
Q ss_pred HHHHHHHHHHHHHHHHHHh--cCccchhhHHHHhcCCchhhhHHHhhhhHHHHHHHHHHHhccccccchHHHHHHHhhhc
Q psy17612 94 LHLLQQRTWLIHWSLFVFF--NHVKGRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQES 171 (449)
Q Consensus 94 l~~l~qR~WliHwsLf~ff--n~~~g~~~~iD~F~~~~~yl~aIqt~cp~lLRYlvvA~Il~~~r~~~l~dlv~vi~qE~ 171 (449)
.. |.. .+...+- +++.+.+.+-.+.. +....+.....+..+-.-...-...+..+-+++...+
T Consensus 74 ~~------~~~-~~~~~~~~~~~~~a~~~~~~a~~--------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 74 EA------YYI-LGSANFMIDEKQAAIDALQRAIA--------LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138 (184)
T ss_dssp HH------HHH-HHHHHHHTTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HH------HHH-HHHHHHHcCCHHHHHHHHHHHHH--------hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc
Confidence 11 111 0111111 11222222222221 1122233333443333322222344555555665544
Q ss_pred cCCCchHHHHHHHHhhcccHHHHHHHHHHHh
Q psy17612 172 YTYKDPITEFLEHLYVSFDFESAREKLTECT 202 (449)
Q Consensus 172 ~~Y~DpiT~fv~~lYv~fdf~~aq~~L~~~~ 202 (449)
. ..+....+=.+.+..-++++|.+.+.++-
T Consensus 139 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al 168 (184)
T 3vtx_A 139 G-FIRAYQSIGLAYEGKGLRDEAVKYFKKAL 168 (184)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred h-hhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 22345566667777788888887766543
No 20
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=95.81 E-value=0.84 Score=40.93 Aligned_cols=74 Identities=11% Similarity=0.099 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHh
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYID 84 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id 84 (449)
++++..+.+|.+|..+++.|+|+.|.+.+..+....|.+.. ...+++..=.+-...++|+.|.+.++++-+...
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p 83 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW-AADAQFYLARAYYQNKEYLLAASEYERFIQIYQ 83 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc-hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC
Confidence 45667789999999999999999999999999988875433 255666666667778899999999888766544
No 21
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=95.11 E-value=0.15 Score=42.11 Aligned_cols=69 Identities=10% Similarity=0.098 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
|+|+.-+++..+|..+++.|+|+.|.+++.......|.. ..++..+=.+-..+++|+.|.+..+++-++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 76 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN----AILYSNRAACLTKLMEFQRALDDCDTCIRL 76 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHhhHHHhhccHHHHHHHHHHHHHh
Confidence 789999999999999999999999999999988887643 223444444555678999999998887553
No 22
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=95.09 E-value=0.92 Score=39.63 Aligned_cols=69 Identities=17% Similarity=-0.048 Sum_probs=47.6
Q ss_pred CCHHH-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 10 FKMDM-MESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 10 ~~~e~-~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
.+|+. .+.++.+|..++..|+|+.|.+++.......+.. ..++...-.+-...++++.|.+.+.++-+.
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 100 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS----ADAHAALAVVFQTEMEPKLADEEYRKALAS 100 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45555 7888888888888888888888888877776532 223333333445567888888877776554
No 23
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=94.24 E-value=0.081 Score=42.51 Aligned_cols=56 Identities=18% Similarity=0.286 Sum_probs=49.1
Q ss_pred HHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeC
Q psy17612 225 MIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMG 293 (449)
Q Consensus 225 ~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~ 293 (449)
.-|..|++-++.+.| +.||..|||+.+++-.-|-.|..+|+|.+-||-.-..|..+
T Consensus 10 ~~Fi~yIk~~Kvv~L-------------edLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 10 TEFINYIKKSKVVLL-------------EDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHHHCSEECH-------------HHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHHHcCeeeH-------------HHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 346789999999999 99999999999999999999999999999999854444443
No 24
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=94.13 E-value=2.3 Score=35.80 Aligned_cols=68 Identities=13% Similarity=-0.028 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
+++..+.++.+|..++..|+|+.|.+++.......+.. ...+...-.+-...++++.|.+.+.++-+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 71 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN----ELAWLVRAEIYQYLKVNDKAQESFRQALSI 71 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 56778899999999999999999999999988887643 223333333445668999998888877654
No 25
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=94.08 E-value=3 Score=37.04 Aligned_cols=75 Identities=11% Similarity=-0.052 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC----cchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPT----SDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~----~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
.|+..++++.+|..++..|+|+.|.+++.....+... .+.....++...-.+-...++++.|.+.+.++-++.++
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999988876531 23333444444444455567999999999888887765
No 26
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=93.77 E-value=2.9 Score=35.80 Aligned_cols=174 Identities=9% Similarity=-0.008 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhcCCCC
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGGSAN 89 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~~~~~ 89 (449)
..++....++.+|..++..|+|+.|.+++.......+.. ..++...-.+-...++++.|.+.++++.+....
T Consensus 52 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---- 123 (243)
T 2q7f_A 52 ENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA----ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME---- 123 (243)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC----
T ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----
Confidence 445557788888889999999999988888877776532 223333334445567888888877777654322
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---cCccchhhHHHHhcCCchhhhHHHhhhhHHHHHHHHHHHhccccccchHHHHHH
Q psy17612 90 FESPLHLLQQRTWLIHWSLFVFF---NHVKGRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKV 166 (449)
Q Consensus 90 ~~~pl~~l~qR~WliHwsLf~ff---n~~~g~~~~iD~F~~~~~yl~aIqt~cp~lLRYlvvA~Il~~~r~~~l~dlv~v 166 (449)
++. .|.. .+. .++ ++.+|...+-.+.... ...+.+...++.+..-...-...+..+-++
T Consensus 124 --~~~------~~~~-~a~-~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 124 --NGD------LFYM-LGT-VLVKLEQPKLALPYLQRAVELN--------ENDTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp --SHH------HHHH-HHH-HHHHTSCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred --CHH------HHHH-HHH-HHHHhccHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111 1111 011 111 1122222222222111 112223222222222222222333434444
Q ss_pred HhhhccCCCchHHHHHHHHhhcccHHHHHHHHHHHhhhcccccc
Q psy17612 167 IQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFF 210 (449)
Q Consensus 167 i~qE~~~Y~DpiT~fv~~lYv~fdf~~aq~~L~~~~~vl~~DfF 210 (449)
+...+ ...+....+-.+.+..-++++|.+.+.++-+.-.++..
T Consensus 186 ~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 186 TEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence 44433 12233556666777778888888888887765555443
No 27
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=93.51 E-value=3.3 Score=35.59 Aligned_cols=66 Identities=15% Similarity=0.014 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhh---HHHHHHHHHHhHhhcChHHHHHHHHHHHH
Q psy17612 16 ESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHY---LAVLWGKLASEILVQNWDLALEDLNKLRE 81 (449)
Q Consensus 16 d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~---ls~lwgkla~eIl~~dwd~a~~~l~kLke 81 (449)
+.++.+|..++..|+|+.|.+++.......+..+... ...+...-.+-...++++.|.+.+.++-+
T Consensus 39 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT 107 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4566667777777777777777666665554321111 22333333334445677777776666655
No 28
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=93.40 E-value=0.45 Score=37.29 Aligned_cols=66 Identities=17% Similarity=0.131 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 16 ESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 16 d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
++++.+|..++..|+|+.|.+++..+....|+... ...+++..-.+-...++++.|.+.++++-+.
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK-AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56777777777777777777777777766654321 1333444334445566777777766665443
No 29
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=93.10 E-value=0.4 Score=37.52 Aligned_cols=71 Identities=13% Similarity=-0.056 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
+|+..++++.+|..++..|+|+.|.+++......-|.... +....=.+-...++++.|.+.+++.-++-..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG----TYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4556788999999999999999999999999888774322 3333333445567999999999888776654
No 30
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=93.06 E-value=2.6 Score=39.04 Aligned_cols=75 Identities=9% Similarity=-0.061 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhcC
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGG 86 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~~ 86 (449)
.....+++..|..++..|+|+.|.+++.......+.+......++...-.+-...++++.|.+...++-++....
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 80 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI 80 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 345668899999999999999999999999888765433323333333345556679999999999988887763
No 31
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=92.86 E-value=4 Score=36.10 Aligned_cols=72 Identities=10% Similarity=-0.033 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 14 MMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 14 ~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
....++..|..++..|+|+.|.+++.......+.+......++...-.+-...++++.|.+.+.++.++...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 75 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART 75 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Confidence 456789999999999999999999999998877543332334444444555668999999999998887775
No 32
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=92.83 E-value=0.38 Score=37.77 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHH
Q psy17612 16 ESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYI 83 (449)
Q Consensus 16 d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~i 83 (449)
++++.+|..+++.|+|+.|.+.+..+....|+.... ..+++..-.+-...++++.|.+.+.++-+..
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~ 69 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYT-PNALYWLGESYYATRNFQLAEAQFRDLVSRY 69 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCccc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 468999999999999999999999988887754322 3455555555666789999998888775543
No 33
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=92.81 E-value=5.1 Score=35.82 Aligned_cols=168 Identities=9% Similarity=0.077 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhcCCCCCCChH
Q psy17612 15 MESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGGSANFESPL 94 (449)
Q Consensus 15 ~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~~~~~~~~pl 94 (449)
.+.++.+|..++..|+|+.|.+++.......|... ..+.....+-...++++.|.+.+.++-+.-.. ++.
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~ 91 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHA----SCLPVHIGTLVELNKANELFYLSHKLVDLYPS------NPV 91 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------STH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh----hhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC------CHH
Confidence 45688999999999999999999999888776432 23434445556778999998888877653222 221
Q ss_pred HHHHHHHHHHHHHHHHHhc---CccchhhHHHHhcCCchhhhHHHhhhhHHHHHHHHHHHhccccccchHHHHHHHhhhc
Q psy17612 95 HLLQQRTWLIHWSLFVFFN---HVKGRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQES 171 (449)
Q Consensus 95 ~~l~qR~WliHwsLf~ffn---~~~g~~~~iD~F~~~~~yl~aIqt~cp~lLRYlvvA~Il~~~r~~~l~dlv~vi~qE~ 171 (449)
. |.. -+...+-. +++|...+-.+....|. .+.....++.+..-...-...+..+-+++...+
T Consensus 92 ~------~~~-l~~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 156 (330)
T 3hym_B 92 S------WFA-VGCYYLMVGHKNEHARRYLSKATTLEKT--------YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK 156 (330)
T ss_dssp H------HHH-HHHHHHHSCSCHHHHHHHHHHHHTTCTT--------CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT
T ss_pred H------HHH-HHHHHHHhhhhHHHHHHHHHHHHHhCCc--------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Confidence 1 110 01111111 11222223222222222 122333333222222222333444445554443
Q ss_pred cCCCchHHHHHHHHhhcccHHHHHHHHHHHhhhcccc
Q psy17612 172 YTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDND 208 (449)
Q Consensus 172 ~~Y~DpiT~fv~~lYv~fdf~~aq~~L~~~~~vl~~D 208 (449)
. ..++...+-.+.+..-+++.|.+.+.++-+.-..+
T Consensus 157 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 192 (330)
T 3hym_B 157 G-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192 (330)
T ss_dssp T-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred c-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC
Confidence 2 33556667777778889999998888877655444
No 34
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=92.61 E-value=0.84 Score=38.43 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=55.5
Q ss_pred cCCCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 8 FQFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 8 ~~~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
..++|+..++++.+|..++..|+|+.|.+++.......|.+ . ..+++.=.+-...++|+.|.+...++-++
T Consensus 14 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~---~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 14 NEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-S---RFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc-H---HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999888877643 2 23333333455678999999988887654
No 35
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=92.58 E-value=3.2 Score=37.19 Aligned_cols=68 Identities=12% Similarity=0.004 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHH
Q psy17612 12 MDMMESMYKLAKFRYECG-NYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYI 83 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~G-dY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~i 83 (449)
|+..+.++.+|..++..| +++.|.+++.......+... .++...-.+-...++++.|.+.+.++-+..
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 155 (330)
T 3hym_B 87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG----PAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155 (330)
T ss_dssp TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Confidence 344566777777777777 77777777777666654321 122222233344567777777776665543
No 36
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=92.53 E-value=0.8 Score=39.57 Aligned_cols=71 Identities=15% Similarity=0.082 Sum_probs=55.8
Q ss_pred ccCCCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHH-HhHhhcChHHHHHHHHHHHHH
Q psy17612 7 FFQFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLA-SEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 7 ~~~~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla-~eIl~~dwd~a~~~l~kLke~ 82 (449)
-.+++|+..++++.+|..+++.|+|+.|.+++.....+-|.+ . ..|..++ +-...++++.|.+...++-++
T Consensus 28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~-~----~~~~~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-V----DYIMGLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H----HHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 356899999999999999999999999999999988887743 2 2344443 334457899999988887664
No 37
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=92.46 E-value=5.9 Score=35.68 Aligned_cols=64 Identities=17% Similarity=0.126 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 15 MESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 15 ~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
.+.++.+|..++..|+|+.|.+++.......|.. ...+...-.+-...++++.|.+.+.++-+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 66 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAMGKSKAALPDLTKVIAL 66 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5788999999999999999999998888877642 234445555556678899888888777654
No 38
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=92.34 E-value=5.5 Score=35.10 Aligned_cols=69 Identities=13% Similarity=0.083 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 16 ESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 16 d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
+++|.+|..+++.|+|+.|.+.+..+....|.+... ..+++.+-.+-...++|+.|.+..+++-+...+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~ 73 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYS-QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 73 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence 578999999999999999999999999887754332 445555556666778999999888877654443
No 39
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=92.32 E-value=1.1 Score=36.73 Aligned_cols=73 Identities=14% Similarity=0.158 Sum_probs=56.9
Q ss_pred eccCCCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 6 FFFQFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 6 ~~~~~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
.-..++|+..+.++.+|..++..|+|+.|.+++......-|.+ . ..++..=.+-...++++.|.+...++-++
T Consensus 9 ~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD-A---RYFLGLGACRQSLGLYEQALQSYSYGALM 81 (142)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc-H---HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3456889999999999999999999999999999888877643 2 23333334455678999999988887654
No 40
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=92.15 E-value=0.84 Score=36.16 Aligned_cols=69 Identities=16% Similarity=0.046 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHH
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYI 83 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~i 83 (449)
+|+...+++.+|..++..|+|+.|.+++.......|.. ..++...-.+-...++++.|.+.+.++-+.-
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH----QALRVFYAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 58889999999999999999999999999998887743 2233333344455678999998888776543
No 41
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=92.11 E-value=1 Score=33.81 Aligned_cols=66 Identities=12% Similarity=0.063 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 13 DMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 13 e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
+..+.++.+|..++..|+|+.|.+++.......|.+ ...++..-.+-...++|+.|.+.+.++-+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 456889999999999999999999999988877643 224444444556678999998888777554
No 42
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.10 E-value=0.57 Score=37.16 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
.+...+.++.+|..+++.|+|+.|.+++.......+.. ......+...-.+-...++|+.|.+.+.++-+.
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP-QDQAVLHRNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 45668899999999999999999999999988887643 111333444444456667999999888877654
No 43
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=92.10 E-value=0.1 Score=54.61 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=33.3
Q ss_pred CChHHHHHHHHHHhhhcccccccccCCCeEEecCC
Q psy17612 365 MGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQ 399 (449)
Q Consensus 365 m~~~eaE~WIvnLIr~~~ldAKIDs~~~~v~m~~~ 399 (449)
++.+|+|.+++|||+++.++|+||.+.++||++.+
T Consensus 395 ~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 395 HSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp CCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCC
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCC
Confidence 78999999999999999999999999999999876
No 44
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=92.08 E-value=0.79 Score=36.28 Aligned_cols=66 Identities=14% Similarity=0.006 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 13 DMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 13 e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
+..+.++.+|..++..|+|+.|.+++.......|.+ ..++..+=.+-...++|+.|.+...++-++
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 67 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIADCNKAIEK 67 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 456789999999999999999999999988887643 234444444556678999999998887654
No 45
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.06 E-value=0.026 Score=60.15 Aligned_cols=51 Identities=27% Similarity=0.443 Sum_probs=39.8
Q ss_pred HHH-HHHhhcCCC-hHHHHHHHHHHhhhcccccccccCCCeEEecCCCCChhHH
Q psy17612 355 ITI-MLASKLNMG-TDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPYQQ 406 (449)
Q Consensus 355 ~~~-~la~kLnm~-~~eaE~WIvnLIr~~~ldAKIDs~~~~v~m~~~~~svyqq 406 (449)
|+. ++|.+|+++ ++|||.-++++|+++.++|.||.+.|.|+- .+.+.+|.+
T Consensus 402 IsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~s-ke~~d~yst 454 (523)
T 4b4t_S 402 ISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIET-TELLNIYDS 454 (523)
T ss_dssp ECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTTCCEEC-CSSSCC---
T ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEEecCCCEEEe-Ccccccccc
Confidence 444 679999985 788999999999999999999999998774 444455543
No 46
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=92.05 E-value=5.3 Score=34.27 Aligned_cols=69 Identities=14% Similarity=0.073 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
++..++++.+|..++..|+|+.|.+++....... . + ..++...-.+-...++++.|.+.+.++-++...
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~-~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 70 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K-D---ITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE 70 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C-C---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c-c---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 4567899999999999999999999999888776 2 2 335555555666778999999999988776655
No 47
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=92.02 E-value=0.77 Score=35.53 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
-++....+++.+|..+++.|+|+.|.+++.......+.. ..++...-.+-...++++.|.+.++++-+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 79 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKDCEECIQL 79 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC----HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 456778999999999999999999999999888776532 223333333445567999999888877664
No 48
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=91.90 E-value=1.1 Score=36.63 Aligned_cols=70 Identities=11% Similarity=0.023 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
+|.-.+...+|..+|+.|+|+.|.+++.....+.|.. ..++..+=.+-...++++.|.+...++-++-..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~----~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN----ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence 4566778889999999999999999999988887643 233444444555668999999999988776544
No 49
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=91.87 E-value=0.11 Score=47.60 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=39.6
Q ss_pred HHHhhcCCC-hHHHHHHHH-HHhhhcccccccccCCCeEEecCCCC
Q psy17612 358 MLASKLNMG-TDEAECWIV-NLIRNARLDAKIDSKLGHVIMGTQPL 401 (449)
Q Consensus 358 ~la~kLnm~-~~eaE~WIv-nLIr~~~ldAKIDs~~~~v~m~~~~~ 401 (449)
.+++.|+++ .+|.|.||+ +.|+.+=+++|||...++|.|+.-.+
T Consensus 114 ~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~ 159 (169)
T 3chm_A 114 TLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAG 159 (169)
T ss_dssp HHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecC
Confidence 458999999 999999999 99999999999999999999986443
No 50
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=91.71 E-value=1.3 Score=32.24 Aligned_cols=66 Identities=21% Similarity=0.263 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 13 DMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 13 e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
...+.++.+|..++..|+|+.|.+++.......+.. ...++..-.+-...++++.|.+.+.++-+.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456789999999999999999999999988877643 223333334455678999999888877654
No 51
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=91.42 E-value=4.7 Score=32.42 Aligned_cols=67 Identities=12% Similarity=-0.127 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
....+.++.+|..++..|+|+.|.+++.......+.. ...+...-.+-...++++.|.+.++++-+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 71 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD----VDVALHLGIAYVKTGAVDRGTELLERSLAD 71 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3456788999999999999999999888776665432 233444444455678999999888877654
No 52
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=91.36 E-value=0.84 Score=38.32 Aligned_cols=70 Identities=20% Similarity=0.133 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 9 QFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 9 ~~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
..+|+.-.+.|.+|++|++.|+|+.|.+++.....+.|.+ . .+....=.+-...++++.|.+..+++-++
T Consensus 25 ~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-~---~a~~~lg~~~~~~~~~~~A~~~~~~al~~ 94 (150)
T 4ga2_A 25 PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-P---KAHRFLGLLYELEENTDKAVECYRRSVEL 94 (150)
T ss_dssp CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H---HHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 3456777788999999999999999999999999888743 2 22333333344567899999888777553
No 53
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=91.22 E-value=9.5 Score=35.64 Aligned_cols=173 Identities=13% Similarity=0.130 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhcCCCCCC
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGGSANFE 91 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~~~~~~~ 91 (449)
|+....++.+|..+...|+|+.|.+++.. + . ...+...+..+-..+++++.|.+.++++.+.-..
T Consensus 98 P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~-~---~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~------ 162 (291)
T 3mkr_A 98 VTNTTFLLMAASIYFYDQNPDAALRTLHQ-----G-D---SLECMAMTVQILLKLDRLDLARKELKKMQDQDED------ 162 (291)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----C-C---SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----C-C---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC------
Confidence 34445556666666666666666655543 1 1 1223333333344456777777776666554111
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcCccchhhHHHHhcCCchhhhHHHhhhh---HHHHHHHHHHHhccccccchHHHHHHHh
Q psy17612 92 SPLHLLQQRTWLIHWSLFVFFNHVKGRDLIIDMFLNRPHYLNAIQTMCP---HILRYLATAVIINRSKRNALKDLVKVIQ 168 (449)
Q Consensus 92 ~pl~~l~qR~WliHwsLf~ffn~~~g~~~~iD~F~~~~~yl~aIqt~cp---~lLRYlvvA~Il~~~r~~~l~dlv~vi~ 168 (449)
++...+ ...|. .+. .+.+.+-+++. .|-.++. .+| .++.-++.+.+-..+-......+-+++.
T Consensus 163 ~~~~~l-~~a~~------~l~---~~~~~~~eA~~---~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 163 ATLTQL-ATAWV------SLA---AGGEKLQDAYY---IFQEMAD-KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp CHHHHH-HHHHH------HHH---HCTTHHHHHHH---HHHHHHH-HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHH-HHHHH------HHH---hCchHHHHHHH---HHHHHHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111111 11222 111 12233333333 2223322 244 2222232222222222333444555565
Q ss_pred hhccCCCchHHHHHHHHhhcccHHH-HHHHHHHHhhhcccccchHHh
Q psy17612 169 QESYTYKDPITEFLEHLYVSFDFES-AREKLTECTEVLDNDFFLVAC 214 (449)
Q Consensus 169 qE~~~Y~DpiT~fv~~lYv~fdf~~-aq~~L~~~~~vl~~DfFL~~~ 214 (449)
..+. ..+.+..+..+....-.+++ +.+.+.+..+.=.+|+++..+
T Consensus 229 ~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 229 KDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 5542 23445666656666666644 456666666666677776554
No 54
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=91.16 E-value=9.4 Score=35.35 Aligned_cols=64 Identities=14% Similarity=0.072 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 15 MESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 15 ~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
...++.+|..++..|+|+.|.+++.......|.. ..++...-.+-...++++.|.+.+.++-++
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD----AEAWQFLGITQAENENEQAAIVALQRCLEL 128 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3458999999999999999999999888877643 223333333444567888898888777654
No 55
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=91.07 E-value=1.4 Score=33.59 Aligned_cols=69 Identities=12% Similarity=-0.016 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 13 DMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 13 e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
+..+.++.+|..++..|+|+.|.+++.......+.. ..++...-.+-...++++.|.+.+.++-+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence 556789999999999999999999999988877642 223333333445578999999988888776554
No 56
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=91.07 E-value=11 Score=36.08 Aligned_cols=52 Identities=8% Similarity=0.102 Sum_probs=32.2
Q ss_pred ccchHHHHHHHhhhccCCCchHHHHHHHHhhcccHHHHHHHHHHHhhhccccc
Q psy17612 157 RNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDF 209 (449)
Q Consensus 157 ~~~l~dlv~vi~qE~~~Y~DpiT~fv~~lYv~fdf~~aq~~L~~~~~vl~~Df 209 (449)
...+..+-+++...+. ..+....+-.+.+..-+++.|.+.+.++-+.-.++.
T Consensus 287 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 338 (514)
T 2gw1_A 287 TEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI 338 (514)
T ss_dssp TTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS
T ss_pred HHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhH
Confidence 3444545555544432 234456666677778889999888888776555443
No 57
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=91.05 E-value=1.1 Score=33.82 Aligned_cols=64 Identities=11% Similarity=0.048 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHH
Q psy17612 14 MMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLRE 81 (449)
Q Consensus 14 ~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke 81 (449)
..++++.+|..++..|+|+.|.+++.......|.. ...+...=.+-...++++.|.+.+.++-+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35789999999999999999999999988887643 22334444455667899999888877644
No 58
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=91.00 E-value=1.1 Score=35.12 Aligned_cols=77 Identities=13% Similarity=0.040 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC--cchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 9 QFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPT--SDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 9 ~~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~--~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
+-.......+..+|..++..|+|+.|.+++.......+. +......++...=.+-...++++.|.+.+.+.-++...
T Consensus 43 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 121 (164)
T 3ro3_A 43 GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 121 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 334555666777777777777777777777666555432 11221222332223334455677777666666655544
No 59
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=90.94 E-value=0.72 Score=37.29 Aligned_cols=64 Identities=9% Similarity=0.004 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 15 MESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 15 ~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
.+.++.+|..++..|+|+.|.+++.......+.. ...++..-.+-...++++.|.+.+.++-+.
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4455555555555555555555555555544321 112222222333344555555555554443
No 60
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=90.93 E-value=1.9 Score=32.74 Aligned_cols=69 Identities=10% Similarity=0.064 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
.++.....++.+|..++..|+|+.|.+++.......+.. ...+...-.+-...++++.|.+.+.++-+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 75 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN----AVYFCNRAAAYSKLGNYAGAVQDCERAICI 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhhchHHHHHHHHHHHhc
Confidence 456778899999999999999999999999888877632 223444444455678999999888877654
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=90.87 E-value=11 Score=35.44 Aligned_cols=75 Identities=7% Similarity=-0.031 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhcC
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGG 86 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~~ 86 (449)
+.....++.+|..++..|+|+.|.+++.......+.+......++...-.+-...++++.|.+.+.++-++....
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 119 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 577888999999999999999999999999988775433322333333334455689999999999988887763
No 62
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=90.77 E-value=0.74 Score=34.36 Aligned_cols=63 Identities=11% Similarity=-0.009 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhh-cChHHHHHHHHHH
Q psy17612 15 MESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILV-QNWDLALEDLNKL 79 (449)
Q Consensus 15 ~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~-~dwd~a~~~l~kL 79 (449)
.+.++.+|..++..|+|+.|.+++.......+. ... ...+...-.+-... ++++.|.+.+.++
T Consensus 40 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 40 SKYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYN-KDVWAAKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTC-HHHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cch-HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566666666666666666666665555443 001 22333333344445 5666665555443
No 63
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=90.62 E-value=0.73 Score=35.30 Aligned_cols=70 Identities=14% Similarity=-0.007 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchh--h-HHHHHHHHHHhHhhcChHHHHHHHHHHHH
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRH--Y-LAVLWGKLASEILVQNWDLALEDLNKLRE 81 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k--~-ls~lwgkla~eIl~~dwd~a~~~l~kLke 81 (449)
|+....++.+|..++..|+|+.|.+++.......+..... . ..+++..-.+-...++++.|.+.+.++.+
T Consensus 35 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 35 PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4456788999999999999999999999888876532111 1 23333333344556799999988877765
No 64
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=90.61 E-value=5.6 Score=34.89 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHH
Q psy17612 16 ESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLRE 81 (449)
Q Consensus 16 d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke 81 (449)
+.++.+|..++..|+|+.|.+++.......|.... ++...-.+-...++++.|.+.+.++-+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~ 65 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY----IYNRRAVCYYELAKYDLAQKDIETYFS 65 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST----THHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 56899999999999999999999998888764322 333333455667899999988877755
No 65
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=90.53 E-value=8 Score=33.51 Aligned_cols=178 Identities=11% Similarity=-0.038 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhcCCCCC
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGGSANF 90 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~~~~~~ 90 (449)
.++..+.++.+|..++..|+|+.|.+++.......+.. ...+...-.+-...++++.|.+.+.++-+ .+
T Consensus 67 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~---- 135 (252)
T 2ho1_A 67 DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN----ARVLNNYGGFLYEQKRYEEAYQRLLEASQ---DT---- 135 (252)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTT---CT----
T ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHHhHHHHHHHHHHHHHh---Cc----
Confidence 35557789999999999999999999999988876632 22333333445566789988887776644 10
Q ss_pred CChHHHHHHHHHHHHHHHHHHhcCccchhhHHHHhcCCchhhhHHH--hhhhHHHHHHHHHHHhccccccchHHHHHHHh
Q psy17612 91 ESPLHLLQQRTWLIHWSLFVFFNHVKGRDLIIDMFLNRPHYLNAIQ--TMCPHILRYLATAVIINRSKRNALKDLVKVIQ 168 (449)
Q Consensus 91 ~~pl~~l~qR~WliHwsLf~ffn~~~g~~~~iD~F~~~~~yl~aIq--t~cp~lLRYlvvA~Il~~~r~~~l~dlv~vi~ 168 (449)
.+|.. ...|.. .+ ..++.. +-.+.=++.|. .+++ ...+.+...++.+..-..+-...+..+-+++.
T Consensus 136 ~~~~~---~~~~~~-la-~~~~~~-g~~~~A~~~~~------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 203 (252)
T 2ho1_A 136 LYPER---SRVFEN-LG-LVSLQM-KKPAQAKEYFE------KSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQ 203 (252)
T ss_dssp TCTTH---HHHHHH-HH-HHHHHT-TCHHHHHHHHH------HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCccc---HHHHHH-HH-HHHHHc-CCHHHHHHHHH------HHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11211 112221 11 112210 00111111111 2221 11233333332222222222233333444443
Q ss_pred hhccCCCchHHHHHHHHhhcccHHHHHHHHHHHhhhcccccchH
Q psy17612 169 QESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLV 212 (449)
Q Consensus 169 qE~~~Y~DpiT~fv~~lYv~fdf~~aq~~L~~~~~vl~~DfFL~ 212 (449)
..+ ...+....+..+....-++++|.+.+.++.+.-.+++...
T Consensus 204 ~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 204 GGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp TSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred hCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 332 1223355566666677889999998888877766665543
No 66
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=90.43 E-value=12 Score=35.41 Aligned_cols=73 Identities=16% Similarity=0.118 Sum_probs=51.7
Q ss_pred eccCCCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 6 FFFQFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 6 ~~~~~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
.-+.-+|+..+.++.+|..++..|+|+.|.+++.......|.. ..++...-.+-...++++.|.+.+.++-+.
T Consensus 17 ~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 17 NLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp ------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3445578888999999999999999999999999888776532 334444445556667888888888776554
No 67
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=90.41 E-value=1.1 Score=35.50 Aligned_cols=67 Identities=10% Similarity=0.014 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
+...+.++.+|..++..|+|+.|.+++.......+.. ..++...-.+-...++|+.|.+.+.++-++
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 72 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALEL 72 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4456789999999999999999999999988887643 234444444455678999999888877654
No 68
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=90.39 E-value=1.5 Score=36.47 Aligned_cols=69 Identities=13% Similarity=0.010 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
-+++..+.++.+|..++..|+|+.|.+++.....+.+.. ..++...-.+-...++++.|.+.+.++-++
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN----PIYLSNRAAAYSASGQHEKAAEDAELATVV 74 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 456778899999999999999999999999998888643 234444444556678999999988877654
No 69
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=90.29 E-value=6.1 Score=33.77 Aligned_cols=64 Identities=13% Similarity=-0.085 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 15 MESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 15 ~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
...++.+|..++..|+|+.|.+++.......+.. ...+...-.+-...++++.|.+.+.++-+.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 86 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED----AIPYINFANLLSSVNELERALAFYDKALEL 86 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4568899999999999999999999888876643 223344444455678999999888877654
No 70
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=89.93 E-value=2.2 Score=34.33 Aligned_cols=67 Identities=12% Similarity=0.152 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
.+..+.++.+|..++..|+|+.|.+++.......+.. ..++...-.+-...++|+.|.+.+.++-+.
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 76 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIEL 76 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567789999999999999999999999988877643 233444444556678999999888877664
No 71
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=89.84 E-value=0.69 Score=46.11 Aligned_cols=66 Identities=11% Similarity=0.072 Sum_probs=52.0
Q ss_pred ccHHHHHHHHHHHhhhcccccchHHh-HHHHHHHHHHHHHHHhhhhc----eeeEeeccccccccccchhhHHhhcCCC-
Q psy17612 189 FDFESAREKLTECTEVLDNDFFLVAC-LDEFVENARLMIFETFCRIH----QCISIQKESNVIDKIFDGQMLASKLNMG- 262 (449)
Q Consensus 189 fdf~~aq~~L~~~~~vl~~DfFL~~~-~d~fvenaR~~ife~ycriy----~~IsI~~~~~~~~~~~~~~~LA~~Lnms- 262 (449)
.+|..|++.+.. ..-+||..| ++-|+..+|..++..+++.| +.+.+ +.|++.|+++
T Consensus 177 gNY~rFFrL~~~-----~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl-------------~~L~~~L~Fds 238 (316)
T 3t5v_A 177 NFYARFFQLMQS-----PSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPF-------------IYLENMLLFNN 238 (316)
T ss_dssp CCHHHHHHHHTC-----TTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEH-------------HHHHHHTTCSS
T ss_pred chHHHHHHHHhc-----cCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCH-------------HHHHHHhCCCC
Confidence 356677764432 235788877 67789999999999999999 58999 9999999994
Q ss_pred HHHHHHHHHH
Q psy17612 263 TDEAECWIVN 272 (449)
Q Consensus 263 ~~e~E~wIVn 272 (449)
+++++.++-.
T Consensus 239 ~ee~~~F~~~ 248 (316)
T 3t5v_A 239 RQEIIEFCNY 248 (316)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7887777743
No 72
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=89.83 E-value=1.6 Score=34.33 Aligned_cols=75 Identities=15% Similarity=0.030 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc-c-hhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTS-D-RHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~-~-~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
++.....++.+|..++..|+|+.|.+++.......+.. + .....++...-.+-...++++.|.+...+.-++...
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 35567789999999999999999999999888776532 1 221233444444445567999999999998888776
No 73
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=89.76 E-value=1.5 Score=34.21 Aligned_cols=73 Identities=14% Similarity=-0.112 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 9 QFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 9 ~~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
...|+....++.+|..++..|+|+.|.+++.......+... ..+...=.+-...++++.|.+.+.++-++-..
T Consensus 13 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 13 AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS----VAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 34566678999999999999999999999999888876432 22222222344567999999998888776554
No 74
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=89.61 E-value=1 Score=37.45 Aligned_cols=70 Identities=10% Similarity=0.036 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC--------Cc------chhhHHHHHHHHHHhHhhcChHHHHHHHHH
Q psy17612 13 DMMESMYKLAKFRYECGNYSITTSYLYFYLLVMP--------TS------DRHYLAVLWGKLASEILVQNWDLALEDLNK 78 (449)
Q Consensus 13 e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~--------~~------~~k~ls~lwgkla~eIl~~dwd~a~~~l~k 78 (449)
+..+.+...|..++..|+|+.|.+++......++ ++ ++....++...-.|-+..++|+.|.+...+
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 5678899999999999999999999998887732 11 233345555555666777899999999888
Q ss_pred HHHH
Q psy17612 79 LREY 82 (449)
Q Consensus 79 Lke~ 82 (449)
+-++
T Consensus 89 al~~ 92 (162)
T 3rkv_A 89 VLKR 92 (162)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=89.47 E-value=5.3 Score=43.50 Aligned_cols=167 Identities=13% Similarity=0.086 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHH-HhHhhcChHHHHHHHHHHHHHHhcCCCC
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLA-SEILVQNWDLALEDLNKLREYIDGGSAN 89 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla-~eIl~~dwd~a~~~l~kLke~id~~~~~ 89 (449)
.|+..++++.+|..+.+.|+|++|.+++.....+-|+.. ..|..++ +-...++++.|.+..+++-++-.+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~-----~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~---- 75 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA-----AAHSNLASVLQQQGKLQEALMHYKEAIRISPT---- 75 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Confidence 477889999999999999999999999999988877432 2233333 233457899998888877553211
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhcCccchhhHHHHhcCCchhhhHHHhhhhHHHHHHHHHHHhcc-cc-ccchHHHHHHH
Q psy17612 90 FESPLHLLQQRTWLIHWSLFVFFNHVKGRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINR-SK-RNALKDLVKVI 167 (449)
Q Consensus 90 ~~~pl~~l~qR~WliHwsLf~ffn~~~g~~~~iD~F~~~~~yl~aIqt~cp~lLRYlvvA~Il~~-~r-~~~l~dlv~vi 167 (449)
++ ..+...... +.-.=++++|.+.+-.+..-.|.+ +.. |.-++.+... .+ ...+...-+++
T Consensus 76 --~~-~a~~nLg~~----l~~~g~~~~A~~~~~kAl~l~P~~--------~~a--~~~Lg~~~~~~g~~~eAi~~~~~Al 138 (723)
T 4gyw_A 76 --FA-DAYSNMGNT----LKEMQDVQGALQCYTRAIQINPAF--------ADA--HSNLASIHKDSGNIPEAIASYRTAL 138 (723)
T ss_dssp --CH-HHHHHHHHH----HHHTTCHHHHHHHHHHHHHHCTTC--------HHH--HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --CH-HHHHHHHHH----HHHcCCHHHHHHHHHHHHHhCCCC--------HHH--HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 111111111 000001222222222222212222 222 3334444432 22 33445455566
Q ss_pred hhhccCCCchHHHHHHHHhhcccHHHHHHHHHHHhhh
Q psy17612 168 QQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEV 204 (449)
Q Consensus 168 ~qE~~~Y~DpiT~fv~~lYv~fdf~~aq~~L~~~~~v 204 (449)
...+ .+.+....+-.++....++++|.+.+.++.+.
T Consensus 139 ~l~P-~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 139 KLKP-DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHCS-CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HhCC-CChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 5555 24466788888888889999998887776554
No 76
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=89.39 E-value=1.8 Score=34.19 Aligned_cols=69 Identities=14% Similarity=0.035 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHH
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYI 83 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~i 83 (449)
.|+....++.+|..++..|+|+.|.+.+.......|.. ..++...=.+-...++++.|.+.+.++-++-
T Consensus 34 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 34 APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF----VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 45556889999999999999999999999988887643 2344444445566789999999999887765
No 77
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=89.38 E-value=10 Score=36.39 Aligned_cols=170 Identities=11% Similarity=-0.020 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhcCCCCCC
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGGSANFE 91 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~~~~~~~ 91 (449)
+.....++.+|..++..|+|+.|.+++.......+. ...+...-.+-...++++.|.+.+.++-+.-. .
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~ 302 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-----VNSYIYMALIMADRNDSTEYYNYFDKALKLDS------N 302 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT------T
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc------C
Confidence 677889999999999999999999999998888764 23344444444556788888887776643211 1
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcCccchhhHHHHhcCCchhhhHHHhhhhHHHHHHHHHHHhcc-cc-ccchHHHHHHHhh
Q psy17612 92 SPLHLLQQRTWLIHWSLFVFFNHVKGRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINR-SK-RNALKDLVKVIQQ 169 (449)
Q Consensus 92 ~pl~~l~qR~WliHwsLf~ffn~~~g~~~~iD~F~~~~~yl~aIqt~cp~lLRYlvvA~Il~~-~r-~~~l~dlv~vi~q 169 (449)
++. .+....++ ++..=++++|...+-.+....|.. +..... ++.+... .+ ...+..+-+++..
T Consensus 303 ~~~-~~~~l~~~----~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 303 NSS-VYYHRGQM----NFILQNYDQAGKDFDKAKELDPEN--------IFPYIQ--LACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp CTH-HHHHHHHH----HHHTTCTTHHHHHHHHHHHTCSSC--------SHHHHH--HHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred CHH-HHHHHHHH----HHHhCCHHHHHHHHHHHHHhChhh--------HHHHHH--HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 221 11111110 011112344444444443322221 222222 3333322 12 2223333334433
Q ss_pred hccCCCchHHHHHHHHhhcccHHHHHHHHHHHhhhcccc
Q psy17612 170 ESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDND 208 (449)
Q Consensus 170 E~~~Y~DpiT~fv~~lYv~fdf~~aq~~L~~~~~vl~~D 208 (449)
.+ ...+....+-.+.+..-+++.|.+.+.++-+.-..+
T Consensus 368 ~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 368 FP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp ST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred cc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 32 123445666667778889999998888776654444
No 78
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=89.35 E-value=2 Score=32.69 Aligned_cols=67 Identities=12% Similarity=-0.100 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
++....++.+|..++..|+|+.|.+++.......+.. ...++..-.+-...++++.|.+.+.++-+.
T Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 43 PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY----SKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 4446788999999999999999999999988876643 223343334556678999999988877664
No 79
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=89.31 E-value=11 Score=33.16 Aligned_cols=65 Identities=17% Similarity=0.132 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 14 MMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 14 ~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
..++++.+|..+++.|+|+.|...+......-|.. ..++...=.+-...++++.|.+.++++-++
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 68 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQD----PEALYWLARTQLKLGLVNPALENGKTLVAR 68 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34678999999999999999999999888777643 223333334445568899998888776553
No 80
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=89.26 E-value=2.6 Score=35.24 Aligned_cols=79 Identities=9% Similarity=-0.002 Sum_probs=56.8
Q ss_pred ccCCCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc--ch-hhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHH
Q psy17612 7 FFQFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTS--DR-HYLAVLWGKLASEILVQNWDLALEDLNKLREYI 83 (449)
Q Consensus 7 ~~~~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~--~~-k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~i 83 (449)
..|-++.....+..+|..++..|+|+.|.+++.......... +. ....++...=.+-...++++.|.+.+.+.-++.
T Consensus 58 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 58 KSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 455677788889999999999999999999998877774321 22 223344444445555678999999888887776
Q ss_pred hc
Q psy17612 84 DG 85 (449)
Q Consensus 84 d~ 85 (449)
..
T Consensus 138 ~~ 139 (203)
T 3gw4_A 138 QQ 139 (203)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 81
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=89.25 E-value=5.4 Score=35.13 Aligned_cols=71 Identities=13% Similarity=0.001 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhH---------hhcChHHHHHHHHHH
Q psy17612 9 QFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEI---------LVQNWDLALEDLNKL 79 (449)
Q Consensus 9 ~~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eI---------l~~dwd~a~~~l~kL 79 (449)
..+|+..++++.+|..++..|+|+.|.+++.....+.|+...- -...|.+-... ..++++.|.+.+.++
T Consensus 33 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a--~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 110 (217)
T 2pl2_A 33 KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGG--YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDA 110 (217)
T ss_dssp TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHH
Confidence 4677788999999999999999999999999999888753221 12223222211 015667776666655
Q ss_pred HH
Q psy17612 80 RE 81 (449)
Q Consensus 80 ke 81 (449)
-+
T Consensus 111 l~ 112 (217)
T 2pl2_A 111 ER 112 (217)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 82
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.20 E-value=2.9 Score=32.95 Aligned_cols=65 Identities=11% Similarity=-0.003 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 14 MMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 14 ~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
....++.+|..++..|+|+.|.+++.......+.. ...++..-.+-...++++.|.+.+.++-++
T Consensus 64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD----VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 37889999999999999999999999888876532 234444444556678999999888877664
No 83
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=89.18 E-value=14 Score=34.49 Aligned_cols=72 Identities=10% Similarity=-0.016 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC--CcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 14 MMESMYKLAKFRYECGNYSITTSYLYFYLLVMP--TSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 14 ~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~--~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
....++.+|..++..|+|+.|.+++........ +++.....++...-.+-...++++.|.+.+.++-++...
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 158 (411)
T 4a1s_A 85 LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQ 158 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 346889999999999999999999988777643 223333444444444445567999999999988888765
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=89.14 E-value=1.3 Score=39.58 Aligned_cols=74 Identities=9% Similarity=0.084 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHh--------hcChHHHHHHHHHHHHH
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEIL--------VQNWDLALEDLNKLREY 82 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl--------~~dwd~a~~~l~kLke~ 82 (449)
++...++++.+|..++..|+|+.|.+.+..+....|++. ....+++..-.+-.. .++++.|.+.++++-+.
T Consensus 48 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 48 HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP-RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc-hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 344578999999999999999999999999999987543 323344443333334 67888898888877665
Q ss_pred Hhc
Q psy17612 83 IDG 85 (449)
Q Consensus 83 id~ 85 (449)
...
T Consensus 127 ~p~ 129 (261)
T 3qky_A 127 YPN 129 (261)
T ss_dssp CTT
T ss_pred CcC
Confidence 443
No 85
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=89.12 E-value=11 Score=33.18 Aligned_cols=75 Identities=13% Similarity=-0.039 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC----CcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMP----TSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~----~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
.+.....++.+|..++..|+|+.|.+++........ +++.....++...-.+-...++++.|.+.+.++-++...
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 577888999999999999999999999988777652 123333445555555556678999999999888887754
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=88.94 E-value=2.7 Score=36.50 Aligned_cols=75 Identities=11% Similarity=0.002 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC----CCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVM----PTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~----~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
++.....++.+|..++..|+|+.|.+++......+ .+++.....++...-.+-...++++.|.+.+.++-++...
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999998877763 1223443445555555566678999999998888776554
No 87
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=88.89 E-value=14 Score=34.07 Aligned_cols=70 Identities=19% Similarity=-0.003 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHh
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYID 84 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id 84 (449)
.|+..++++.+|..++..|+|+.|.+++.......|.. ..++...-.+-...++++.|.+.++++-++-.
T Consensus 95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 164 (365)
T 4eqf_A 95 DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN----LKALMALAVSYTNTSHQQDACEALKNWIKQNP 164 (365)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH
T ss_pred CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHccccHHHHHHHHHHHHHhCc
Confidence 45667889999999999999999999999988887643 22333333445566789999988888766433
No 88
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=88.74 E-value=2.2 Score=32.80 Aligned_cols=69 Identities=10% Similarity=-0.024 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
..++..+.++.+|..++..|+|+.|.+++.......+.. ...+...-.+-...++++.|.+.+.++.+.
T Consensus 45 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 45 RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF----IKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 445567889999999999999999999999988877642 223333333445667899999888877664
No 89
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=88.54 E-value=9.9 Score=31.76 Aligned_cols=67 Identities=7% Similarity=-0.213 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhh-cChHHHHHHHHHHHH
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILV-QNWDLALEDLNKLRE 81 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~-~dwd~a~~~l~kLke 81 (449)
.|+..+.++.+|..+...|+|+.|.+++.......+.. ...+...-.+-... ++++.|.+.++++-+
T Consensus 38 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 38 DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS----AEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 34456788999999999999999999999988877643 22333444455667 899999888877655
No 90
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=88.53 E-value=17 Score=34.41 Aligned_cols=77 Identities=14% Similarity=0.089 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcc---hhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 9 QFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSD---RHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 9 ~~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~---~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
+=+++....++.+|.+++..|+|..|.+++.......+..+ .....++...=.+-...++++.|.+...++-++..+
T Consensus 135 ~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 214 (378)
T 3q15_A 135 SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD 214 (378)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 33567888999999999999999999999998877765322 222333333333445567999999999988887775
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=88.41 E-value=12 Score=32.39 Aligned_cols=75 Identities=13% Similarity=-0.039 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC----CcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMP----TSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~----~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
++....+++.+|..++..|+|+.|.+++........ .++.....++...-.+-...++++.|.+.+.++-++.++
T Consensus 39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117 (283)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 378899999999999999999999999988777752 223333444444444555567999999999998888765
No 92
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=88.41 E-value=1.9 Score=35.30 Aligned_cols=72 Identities=11% Similarity=0.052 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
.+|+..+.++.+|..++..|+|+.|.+++.....+.|.+. . .++..=.+-...++++.|.+.+.++.++-..
T Consensus 47 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 47 LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP-R---FPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-H---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc-H---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3556678899999999999999999999999988877432 2 3444444556678999999999988776654
No 93
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=88.15 E-value=18 Score=34.25 Aligned_cols=33 Identities=12% Similarity=0.014 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q psy17612 14 MMESMYKLAKFRYECGNYSITTSYLYFYLLVMP 46 (449)
Q Consensus 14 ~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~ 46 (449)
....++.+|..++..|+|+.|.+++.......|
T Consensus 59 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 91 (450)
T 2y4t_A 59 NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM 91 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 345555555555555555555555555555443
No 94
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=88.12 E-value=17 Score=34.30 Aligned_cols=76 Identities=7% Similarity=0.013 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcc--hhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhcC
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSD--RHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGG 86 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~--~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~~ 86 (449)
.+....++..+|..+...|+|+.|.+++.......+..+ .....++...=.+-...++++.|.+.++++-++..+.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 667788999999999999999999999998887765322 2222233333333445679999999999998887763
No 95
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=88.04 E-value=0.72 Score=34.42 Aligned_cols=66 Identities=15% Similarity=0.159 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHH
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLRE 81 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke 81 (449)
|+..+.++.+|..++..|+|+.|.+++.......+.. ...+...-.+-...++++.|.+.+.++-+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE----SKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4445667889999999999999999999988877643 22333333344556789999888777654
No 96
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=88.03 E-value=14 Score=33.05 Aligned_cols=184 Identities=10% Similarity=-0.005 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhcCCCCCC
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGGSANFE 91 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~~~~~~~ 91 (449)
|+..+.++.+|..+...|+|+.|.+++.......|... ..+...-.+-...++++.|.+.+.++-+....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------ 220 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT----EAFYKISTLYYQLGDHELSLSEVRECLKLDQD------ 220 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc------
Confidence 34456677778888888888888888777776665321 23333333344556787777777666543222
Q ss_pred ChHH-HHHHHHHH--HHHHHH-HHh---cCccchhhHHHHhcCCchhhhHHHhhhhHH--HHHHHHHHHhcc-cc-ccch
Q psy17612 92 SPLH-LLQQRTWL--IHWSLF-VFF---NHVKGRDLIIDMFLNRPHYLNAIQTMCPHI--LRYLATAVIINR-SK-RNAL 160 (449)
Q Consensus 92 ~pl~-~l~qR~Wl--iHwsLf-~ff---n~~~g~~~~iD~F~~~~~yl~aIqt~cp~l--LRYlvvA~Il~~-~r-~~~l 160 (449)
++.. .+..+.-. ..+.+- .++ +++++.+.+-......|. .|.. --|..++.+... .+ ...+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 221 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--------VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--------SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 1110 00000000 000000 111 112222222222221111 1111 113333433322 22 2333
Q ss_pred HHHHHHHhhhccCCCchHHHHHHHHhhcccHHHHHHHHHHHhhhcccccchHHh
Q psy17612 161 KDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVAC 214 (449)
Q Consensus 161 ~dlv~vi~qE~~~Y~DpiT~fv~~lYv~fdf~~aq~~L~~~~~vl~~DfFL~~~ 214 (449)
..+-+++...+ ...+....+-.+.+..-++++|.+.+.++-+.-.++..+...
T Consensus 293 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 345 (359)
T 3ieg_A 293 RICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREG 345 (359)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence 33444444332 122345677777888899999999998888766665554443
No 97
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=88.02 E-value=2.4 Score=35.18 Aligned_cols=68 Identities=16% Similarity=0.072 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
++.....++.+|..++..|+|+.|..++.....+-|.. ..+++.+=.+-...++++.|.+.+.++-++
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETN----EKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc----hHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 45667889999999999999999999999988886632 335555555566778999999999888765
No 98
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=87.91 E-value=0.48 Score=37.98 Aligned_cols=42 Identities=7% Similarity=0.093 Sum_probs=37.8
Q ss_pred HHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccc
Q psy17612 225 MIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARL 279 (449)
Q Consensus 225 ~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rL 279 (449)
.....+++-+..|++ +.||+.||+|++-+.+.|..|...|+|
T Consensus 5 ~~Il~~L~~~g~vsv-------------~eLa~~l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 5 IQVRDLLALRGRMEA-------------AQISQTLNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp HHHHHHHHHSCSBCH-------------HHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHcCCCcH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 345567888999999 999999999999999999999999976
No 99
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=87.83 E-value=2.2 Score=35.48 Aligned_cols=71 Identities=11% Similarity=-0.115 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
.|+....++.+|..++..|+|+.|.+++.....+.+.. ..+++..=.+-...++++.|.+.+.++-++-..
T Consensus 41 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 41 APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY----SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 45567889999999999999999999999988887643 234444444455668999999999888776544
No 100
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=87.75 E-value=1.9 Score=35.22 Aligned_cols=69 Identities=7% Similarity=-0.062 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
++|...+.++.+|..++..|+|+.|.+.+.....+-|.. ..++..+=.+-..+++++.|.+..+++-++
T Consensus 42 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 42 RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF----IKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 456667899999999999999999999999888876632 234444444556678999999998887664
No 101
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=87.74 E-value=3 Score=31.34 Aligned_cols=64 Identities=22% Similarity=0.267 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 15 MESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 15 ~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
...++.+|..++..|+|+.|.+++.......+.. ...+...-.+-...++++.|.+.+.++-+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 72 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 4556666666666666666666666655554321 112222222333445566666555555443
No 102
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=87.60 E-value=14 Score=32.31 Aligned_cols=70 Identities=11% Similarity=-0.008 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
|+..+.++.+|..++..|+|+.|.+++..... .+++......++...-.+-...++++.|.+.++++-+.
T Consensus 34 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~ 103 (272)
T 3u4t_A 34 YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR 103 (272)
T ss_dssp CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 33445678888888888888888888887777 33222211222233333344456788887777666553
No 103
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=87.57 E-value=2.4 Score=33.35 Aligned_cols=71 Identities=8% Similarity=-0.070 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
.|+..+.++.+|..++..|+|+.|.+++.......+.. ..++...-.+-...++++.|.+.+.++-++-..
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 39 NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS----VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 45556789999999999999999999999988887642 223344444455678999999999988877655
No 104
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=87.37 E-value=3.2 Score=31.33 Aligned_cols=68 Identities=22% Similarity=0.216 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHH
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYI 83 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~i 83 (449)
++....++.+|..++..|+++.|.+++.......+.. .......-.+-...++++.|.+.+.++.+..
T Consensus 32 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 32 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99 (136)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3345667778888888888888888887776665532 1122223333445567888877777665544
No 105
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=87.30 E-value=2 Score=32.05 Aligned_cols=67 Identities=9% Similarity=-0.113 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHH
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLRE 81 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke 81 (449)
.|+..+.++.+|..++..|+|+.|.+++.......+.. ...+...-.+-...++++.|.+.+.++.+
T Consensus 34 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 34 DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW----GKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34456789999999999999999999999988887642 22333333445566789888887766543
No 106
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=86.94 E-value=3.2 Score=35.62 Aligned_cols=71 Identities=4% Similarity=-0.066 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhh------------HHHHHHHHHHhHhhcChHHHHHHHHHH
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHY------------LAVLWGKLASEILVQNWDLALEDLNKL 79 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~------------ls~lwgkla~eIl~~dwd~a~~~l~kL 79 (449)
++..+.+..+|..++..|+|+.|.+++.......+...... ..++...-.+-+..++|+.|.+...++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44677899999999999999999999999988876432100 123333334455668999999998887
Q ss_pred HHH
Q psy17612 80 REY 82 (449)
Q Consensus 80 ke~ 82 (449)
-++
T Consensus 115 l~~ 117 (198)
T 2fbn_A 115 LKI 117 (198)
T ss_dssp HHH
T ss_pred HHh
Confidence 665
No 107
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=86.87 E-value=2 Score=36.55 Aligned_cols=62 Identities=10% Similarity=0.017 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHH
Q psy17612 16 ESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLRE 81 (449)
Q Consensus 16 d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke 81 (449)
..++.+|..++..|+|+.|.+++.......+.. ..++...=.+-...++++.|.+.+.++-+
T Consensus 38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAYFQRGMLYYQTEKYDLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 345555555555555555555555555444321 11222222223334455555555544444
No 108
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=86.52 E-value=1.4 Score=35.92 Aligned_cols=70 Identities=9% Similarity=0.021 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcc--hhhHHHHHHHHH-HhHhhcChHHHHHHHHHH
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSD--RHYLAVLWGKLA-SEILVQNWDLALEDLNKL 79 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~--~k~ls~lwgkla-~eIl~~dwd~a~~~l~kL 79 (449)
++|+....++.+|..|++.|+|+.|.+.+.....+.|... ...+...+..++ +....++++.|.+..++.
T Consensus 37 ~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 37 LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677788999999999999999999999998887765322 111222333333 344456888888876654
No 109
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=86.50 E-value=19 Score=32.86 Aligned_cols=30 Identities=13% Similarity=-0.010 Sum_probs=18.8
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHhhhccc
Q psy17612 178 ITEFLEHLYVSFDFESAREKLTECTEVLDN 207 (449)
Q Consensus 178 iT~fv~~lYv~fdf~~aq~~L~~~~~vl~~ 207 (449)
...+-.+.+..-+++.|.+.+.++-+.-..
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 283 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQPG 283 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 455555666677777777777666554333
No 110
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=86.45 E-value=4.3 Score=30.59 Aligned_cols=63 Identities=24% Similarity=0.278 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 16 ESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 16 d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
++++.+|..++..|+++.|.+++.......+.. ...+...-.+-...++++.|.+.++++.+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 64 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 64 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 467889999999999999999999887776532 122222333344557899998887776543
No 111
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=86.43 E-value=3.6 Score=33.14 Aligned_cols=65 Identities=11% Similarity=0.048 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 14 MMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 14 ~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
....++.+|..++..|+++.|.+++.......+.. ...+...-.+-...++++.|.+.++++-+.
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN----FNVRFRLGVALDNLGRFDEAIDSFKIALGL 139 (186)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence 34555666666666666666666666555554421 112222222333345566666555554443
No 112
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=86.09 E-value=0.74 Score=37.88 Aligned_cols=43 Identities=5% Similarity=0.078 Sum_probs=38.4
Q ss_pred HHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccc
Q psy17612 226 IFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDA 281 (449)
Q Consensus 226 ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLda 281 (449)
....+++-+..|++ +.||+.||||++-+.+.|..|.+.|+|.=
T Consensus 6 ~Il~~L~~~g~vsv-------------~eLA~~l~VS~~TIRrDL~~Le~~G~l~R 48 (87)
T 2k02_A 6 EVRDMLALQGRMEA-------------KQLSARLQTPQPLIDAMLERMEAMGKVVR 48 (87)
T ss_dssp HHHHHHHHSCSEEH-------------HHHHHHTTCCHHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHHcCCCcH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 34567788999999 99999999999999999999999998753
No 113
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=86.05 E-value=2.9 Score=35.02 Aligned_cols=72 Identities=11% Similarity=0.025 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
++|...+.++.+|..++..|+|+.|.+++.....+.|.+. ..++..=.+-...++++.|.+.+.++-++-..
T Consensus 50 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 50 LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP----RFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3556677889999999999999999999999988877432 24444444556678999999999888776553
No 114
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=85.95 E-value=22 Score=33.14 Aligned_cols=67 Identities=9% Similarity=0.047 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHH
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLRE 81 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke 81 (449)
+|+....++.+|.+++.+|+++.|..++.......|.. ...+...-.+-...++++.|.+...++-+
T Consensus 29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 95 (388)
T 1w3b_A 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL----AEAYSNLGNVYKERGQLQEAIEHYRHALR 95 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445556666666666666666666665555544421 11111222222334556666655555433
No 115
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=85.93 E-value=3.1 Score=33.08 Aligned_cols=66 Identities=23% Similarity=0.138 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc---chhhHHHHHHHHHHhHhhcChHHHHHHHHHHHH
Q psy17612 16 ESMYKLAKFRYECGNYSITTSYLYFYLLVMPTS---DRHYLAVLWGKLASEILVQNWDLALEDLNKLRE 81 (449)
Q Consensus 16 d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~---~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke 81 (449)
+..+.+|+++|+.|+|..|..++.......... +.....++-..--|-...++++.|.+..+++-+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 356899999999999999999999877765321 222233332222344455688888888777754
No 116
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=85.91 E-value=4.5 Score=30.33 Aligned_cols=67 Identities=21% Similarity=0.243 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
++..+.++.+|..+++.|+|+.|..++.......+.. ...+...-.+-...++++.|.+.++++-+.
T Consensus 40 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 40 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4446788999999999999999999999888776533 223333333345567899998887776543
No 117
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=85.65 E-value=14 Score=34.82 Aligned_cols=77 Identities=9% Similarity=0.091 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcc---hhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 9 QFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSD---RHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 9 ~~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~---~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
+-+++..+.++.+|.+++..|+|+.|.+++.......+..+ .....++...=.+-...++++.|.+...++-++..+
T Consensus 137 ~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 216 (383)
T 3ulq_A 137 KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA 216 (383)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 33566788999999999999999999999998887765332 222223333333344557999999999999888776
No 118
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=85.15 E-value=3.9 Score=30.65 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 18 MYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 18 lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
.+..|..++..|+|+.|.+++.......|.+..+ .++..=.+-...++++.|.+.+.++-++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDE---AYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4788999999999999999999988887643210 2222223344567899999888877654
No 119
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=84.99 E-value=19 Score=31.56 Aligned_cols=73 Identities=10% Similarity=-0.029 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC--CcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhcC
Q psy17612 14 MMESMYKLAKFRYECGNYSITTSYLYFYLLVMP--TSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGG 86 (449)
Q Consensus 14 ~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~--~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~~ 86 (449)
....++.+|..++..|+|+.|.+++........ +++.....++...-.+-...++++.|.+.+.++.++....
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 116 (338)
T 3ro2_A 42 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 116 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence 357889999999999999999999988776653 2223323333333334455679999999999998888763
No 120
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=84.97 E-value=2.6 Score=36.25 Aligned_cols=70 Identities=6% Similarity=-0.037 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHH
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYI 83 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~i 83 (449)
++|+..+.++.+|..++..|+|+.|.+++.....+.|++.. ++..+=.+-..+++++.|.+.+.++-++-
T Consensus 65 ~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~----~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 65 YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT----PVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45677788999999999999999999999999999885422 34444445566789999999888876643
No 121
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=84.95 E-value=4.3 Score=35.84 Aligned_cols=62 Identities=15% Similarity=0.011 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHH
Q psy17612 19 YKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLRE 81 (449)
Q Consensus 19 yk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke 81 (449)
+.+|.+++..|+|..|...+..+....|++... -.++..+-.+-...++++.|.+.++++..
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQAT-RDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCcc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 678999999999999999999999998865332 34555555666777899999988876654
No 122
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=84.30 E-value=5.9 Score=34.65 Aligned_cols=69 Identities=19% Similarity=0.122 Sum_probs=52.3
Q ss_pred CCHHHHHHHHH----------------HHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHH
Q psy17612 10 FKMDMMESMYK----------------LAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLAL 73 (449)
Q Consensus 10 ~~~e~~d~lyk----------------~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~ 73 (449)
.+|+..++++. +|..++..|+|+.|.+++.....+-|.+ ..++...=.+-...++++.|.
T Consensus 33 ~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~ 108 (208)
T 3urz_A 33 LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN----VDCLEACAEMQVCRGQEKDAL 108 (208)
T ss_dssp HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHH
T ss_pred hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHH
Confidence 45666777777 9999999999999999999998888743 223343334445668999999
Q ss_pred HHHHHHHHH
Q psy17612 74 EDLNKLREY 82 (449)
Q Consensus 74 ~~l~kLke~ 82 (449)
+..+++-++
T Consensus 109 ~~~~~al~~ 117 (208)
T 3urz_A 109 RMYEKILQL 117 (208)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 988887664
No 123
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=84.22 E-value=4 Score=35.44 Aligned_cols=36 Identities=8% Similarity=-0.006 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMP 46 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~ 46 (449)
+|+..+.++.+|..++..|+|+.|.+++.......|
T Consensus 72 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 107 (228)
T 4i17_A 72 NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP 107 (228)
T ss_dssp TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 444555566666666666666666666666555555
No 124
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=84.11 E-value=25 Score=32.09 Aligned_cols=64 Identities=11% Similarity=-0.007 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 15 MESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 15 ~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
.+.++.+|..++..|+|+.|.+++.......|.. ..++...-.+-...++++.|.+.+.++-++
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 127 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH----MEAWQYLGTTQAENEQELLAISALRRCLEL 127 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 4568899999999999999999999988877642 223333334455567999999888877664
No 125
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=84.10 E-value=22 Score=31.51 Aligned_cols=28 Identities=7% Similarity=-0.021 Sum_probs=20.1
Q ss_pred hHHHHHHHHhhcccHHHHHHHHHHHhhh
Q psy17612 177 PITEFLEHLYVSFDFESAREKLTECTEV 204 (449)
Q Consensus 177 piT~fv~~lYv~fdf~~aq~~L~~~~~v 204 (449)
....+-.+.+..-++++|.+.+.++-+.
T Consensus 208 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 208 LWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3556666777778888888887776554
No 126
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=83.92 E-value=3.7 Score=34.20 Aligned_cols=67 Identities=13% Similarity=-0.022 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHH
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLRE 81 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke 81 (449)
.|+..++++.+|..++..|+|++|.+++.......|.. ..++...=.+-...++++.|.+..+++-+
T Consensus 103 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 103 NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF----IRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh----hhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45556778888888888999998888888887776632 12222222233445688888877776533
No 127
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=83.43 E-value=5.4 Score=33.27 Aligned_cols=76 Identities=13% Similarity=0.025 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc--chhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhcC
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTS--DRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGG 86 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~--~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~~ 86 (449)
+......++.+|..++..|+|+.|.+++.......... ......++...=.+-...++++.|.+.+.+.-++.+..
T Consensus 22 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 99 (203)
T 3gw4_A 22 PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL 99 (203)
T ss_dssp TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 34567889999999999999999999999887766432 22223334443344556689999999999998888763
No 128
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=83.39 E-value=2.9 Score=33.76 Aligned_cols=64 Identities=13% Similarity=-0.060 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHH
Q psy17612 16 ESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYI 83 (449)
Q Consensus 16 d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~i 83 (449)
+.++.+|..+++.|+|+.|...+......-|.. . .++...=.+-...++++.|.+.++++-++-
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 81 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPER-E---EAWRSLGLTQAENEKDGLAIIALNHARMLD 81 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-H---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 457788888888888888888888777766532 1 122222223344567888888777776653
No 129
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=83.34 E-value=37 Score=33.51 Aligned_cols=66 Identities=11% Similarity=-0.000 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHH
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLRE 81 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke 81 (449)
++....++.+|..|+++|+++.|.+++.......+.. .........+-...++++.|.+.++++.+
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF----GPAWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445677778888888888888888888777665432 12222333333445678888777766544
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=83.29 E-value=5.1 Score=36.75 Aligned_cols=79 Identities=10% Similarity=-0.048 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcc-hhhHHHHHHHHH-HhHhhc-ChHHHHHHHHHHHHHHhc
Q psy17612 9 QFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSD-RHYLAVLWGKLA-SEILVQ-NWDLALEDLNKLREYIDG 85 (449)
Q Consensus 9 ~~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~-~k~ls~lwgkla-~eIl~~-dwd~a~~~l~kLke~id~ 85 (449)
+-.+.....++.+|.+|++.|+|+.|.+++......++..+ ......++..++ +-...+ +++.|.+..++.-++.+.
T Consensus 190 ~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 190 DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 45667778999999999999999999999999888775322 122344444444 333345 579999999999888876
Q ss_pred CC
Q psy17612 86 GS 87 (449)
Q Consensus 86 ~~ 87 (449)
.+
T Consensus 270 ~~ 271 (293)
T 3u3w_A 270 LE 271 (293)
T ss_dssp TT
T ss_pred hC
Confidence 43
No 131
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=82.80 E-value=1.3 Score=42.11 Aligned_cols=82 Identities=20% Similarity=0.342 Sum_probs=60.1
Q ss_pred HHhhcccHHHHHHHHHHHhhhcccccchHHhHHHHHHHHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhc-CCC
Q psy17612 184 HLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKL-NMG 262 (449)
Q Consensus 184 ~lYv~fdf~~aq~~L~~~~~vl~~DfFL~~~~d~fvenaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~L-nms 262 (449)
.+....+|.+|-+.+.. ++=+.+-+..|.+.+|..|....-+.|++|++ +.+|+-| +++
T Consensus 107 ~~L~~~~y~~fW~~l~~-------~~~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~-------------~~la~lLg~~s 166 (226)
T 1rz4_A 107 DLLETCHFQAFWQALDE-------NMDLLEGITGFEDSVRKFICHVVGITYQHIDR-------------WLLAEMLGDLS 166 (226)
T ss_dssp HHHHTTCHHHHHHHSCT-------TCHHHHTSTTHHHHHHHHHHHHHHHHCSEECH-------------HHHHHHTTSCC
T ss_pred HHHHcCCHHHHHHHHhc-------ChhHHHHHhHHHHHHHHHHHHHHHHHHhhCCH-------------HHHHHHHcCCC
Confidence 33455778877776543 22233444568999999999999999999999 9999999 599
Q ss_pred HHHHHHHHHHHHHcccccceecccCCEEEe
Q psy17612 263 TDEAECWIVNLIRNARLDAKIDSKLGHVIM 292 (449)
Q Consensus 263 ~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m 292 (449)
+++++.|+... .=++| ..|.|..
T Consensus 167 ~~el~~fi~~~------GW~vd-~~g~I~~ 189 (226)
T 1rz4_A 167 DSQLKVWMSKY------GWSAD-ESGQIFI 189 (226)
T ss_dssp HHHHHHHHHHH------TCEEC-C--CEEC
T ss_pred HHHHHHHHHHC------CCEEC-CCccEEe
Confidence 99999999873 33555 3455543
No 132
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=82.62 E-value=23 Score=30.51 Aligned_cols=63 Identities=10% Similarity=0.085 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHH
Q psy17612 16 ESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLRE 81 (449)
Q Consensus 16 d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke 81 (449)
+.++..|..+++.|+|+.|.+++.......+..+. ...+..-.+-...++++.|.+.+.++-+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~ 70 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS---VTAYNCGVCADNIKKYKEAADYFDIAIK 70 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHhhcHHHHHHHHHHHHH
Confidence 78999999999999999999999999888862222 2344444455667899999988877653
No 133
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=82.26 E-value=2.5 Score=32.26 Aligned_cols=50 Identities=14% Similarity=0.144 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccc
Q psy17612 219 VENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDA 281 (449)
Q Consensus 219 venaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLda 281 (449)
+...|..|++-+.+--..++. ..||+.||+|...+.+.|..|...|-+..
T Consensus 8 m~~~~~~IL~~L~~~~~~~s~-------------~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 8 GDNLEQKILQVLSDDGGPVAI-------------FQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp -CHHHHHHHHHHHHHCSCEEH-------------HHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred ccHHHHHHHHHHHHcCCCcCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 334567777777553356999 99999999999999999999998887643
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=82.01 E-value=5.8 Score=37.93 Aligned_cols=72 Identities=15% Similarity=0.115 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcc-----------hhhHHHHHHHHHHhHhhcChHHHHHHHHHH
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSD-----------RHYLAVLWGKLASEILVQNWDLALEDLNKL 79 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~-----------~k~ls~lwgkla~eIl~~dwd~a~~~l~kL 79 (449)
.++..++++.+|..++..|+|+.|.+++.....+.+... .....++...=.|-...++|+.|.+...++
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567788999999999999999999999999988887542 111234444444556668999999988887
Q ss_pred HHH
Q psy17612 80 REY 82 (449)
Q Consensus 80 ke~ 82 (449)
-++
T Consensus 223 l~~ 225 (336)
T 1p5q_A 223 LEL 225 (336)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
No 135
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=81.69 E-value=4.5 Score=35.34 Aligned_cols=67 Identities=15% Similarity=0.089 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
++....++.+|..++..|+|+.|.+++.......|... .++...-.+-...++|+.|.+.+.++-++
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~ 106 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP----EVFNYLGIYLTQAGNFDAAYEAFDSVLEL 106 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45666677777777777777777776666666554321 11111111222344566666655555543
No 136
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=81.30 E-value=41 Score=32.53 Aligned_cols=168 Identities=12% Similarity=-0.034 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhcCCCCCCChH
Q psy17612 15 MESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGGSANFESPL 94 (449)
Q Consensus 15 ~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~~~~~~~~pl 94 (449)
..+++.+|.+++..|+++.|.+++.......|. . ..+...-.+-...++++.|.+.+.++-+.-.. ++.
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~--~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~ 311 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT--P---NSYIFLALTLADKENSQEFFKFFQKAVDLNPE------YPP 311 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--H---HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT------CHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC--c---hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC------CHH
Confidence 557899999999999999999999998888764 2 22333333344557899999888877554322 221
Q ss_pred HHHHHHHHHHHHHHHHHh--cCccchhhHHHHhcCCchhhhHHHhhhhHHHHHHHHHHHhccccccchHHHHHHHhhhcc
Q psy17612 95 HLLQQRTWLIHWSLFVFF--NHVKGRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESY 172 (449)
Q Consensus 95 ~~l~qR~WliHwsLf~ff--n~~~g~~~~iD~F~~~~~yl~aIqt~cp~lLRYlvvA~Il~~~r~~~l~dlv~vi~qE~~ 172 (449)
. +... +...+- ++.+|.+.+-.+....| ..+.....++.+..-..+-...+..+-+++...+.
T Consensus 312 ~-~~~l------~~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 376 (537)
T 3fp2_A 312 T-YYHR------GQMYFILQDYKNAKEDFQKAQSLNP--------ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376 (537)
T ss_dssp H-HHHH------HHHHHHTTCHHHHHHHHHHHHHHCT--------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred H-HHHH------HHHHHhcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 1 1111 111111 12223222222222111 12233333322222222222233333344433331
Q ss_pred CCCchHHHHHHHHhhcccHHHHHHHHHHHhhhccccc
Q psy17612 173 TYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDF 209 (449)
Q Consensus 173 ~Y~DpiT~fv~~lYv~fdf~~aq~~L~~~~~vl~~Df 209 (449)
..+....+-.+.+..-+++.|.+.+.++-+.-.++.
T Consensus 377 -~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 377 -LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp -CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred -ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 223456667777888899999988888766544443
No 137
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=80.92 E-value=1 Score=39.41 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcch
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDR 50 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~ 50 (449)
...+|.||-+|-.+|+.|||++|..++..+...-|++.+
T Consensus 71 ~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 71 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence 379999999999999999999999999999999886544
No 138
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=80.85 E-value=30 Score=30.68 Aligned_cols=70 Identities=17% Similarity=0.023 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHh
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYID 84 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id 84 (449)
.|+....++.+|..++..|+|+.|.+++.......|.. ...+...-.+-...++++.|.+.+.++-+.-.
T Consensus 51 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 120 (327)
T 3cv0_A 51 APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNEHNANAALASLRAWLLSQP 120 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34556778888888888999988888888887776532 22333333344556778888887777766533
No 139
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=79.85 E-value=7.8 Score=33.11 Aligned_cols=64 Identities=14% Similarity=0.087 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 15 MESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 15 ~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
...++.+|..++..|+|+.|.+++.......+.. ..++..+-.+-...++++.|.+.++++-++
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN----VKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4788999999999999999999999988886632 234444444556678999999988887664
No 140
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=79.08 E-value=7.7 Score=30.48 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=43.2
Q ss_pred HHHHHHhhhhce---eeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeCCC
Q psy17612 224 LMIFETFCRIHQ---CISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQ 295 (449)
Q Consensus 224 ~~ife~ycriy~---~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~~~ 295 (449)
..|+ .+++-.. .++. ..||++||+|...+.+.|-+|...|.+... +...|.=...++
T Consensus 17 ~~IL-~~L~~~~~~~~~t~-------------~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~-g~~~~~W~i~~~ 76 (77)
T 1qgp_A 17 QRIL-KFLEELGEGKATTA-------------HDLSGKLGTPKKEINRVLYSLAKKGKLQKE-AGTPPLWKIAVS 76 (77)
T ss_dssp HHHH-HHHHHHCSSSCEEH-------------HHHHHHHCCCHHHHHHHHHHHHHHTSEEEE-CSSSCEEEECCC
T ss_pred HHHH-HHHHHcCCCCCcCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCEEec-CCCCCceEecCC
Confidence 3444 5666666 8999 999999999999999999999999988553 333455554443
No 141
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=78.99 E-value=48 Score=32.00 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHH
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLN 77 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~ 77 (449)
+|+..+.++.+|..++..|+|+.|.+.+.......|+. ..+++..-.+-...++++.|.+.++
T Consensus 55 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH----SKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34445666777777777777777777776666655431 2344444444455566776766553
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=78.95 E-value=5.7 Score=33.03 Aligned_cols=67 Identities=13% Similarity=0.028 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHh--HhhcCh--HHHHHHHHHHHHH
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASE--ILVQNW--DLALEDLNKLREY 82 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~e--Il~~dw--d~a~~~l~kLke~ 82 (449)
.|+..+.++.+|..++..|+|+.|.+++.......|.+ . ..|..++.- ...+++ +.|.+.+.++-+.
T Consensus 40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~----~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~ 110 (177)
T 2e2e_A 40 NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN-A----ELYAALATVLYYQASQHMTAQTRAMIDKALAL 110 (177)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC-H----HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-H----HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 34556789999999999999999999999988887643 1 233344432 345677 8898887776554
No 143
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=78.86 E-value=4.4 Score=39.80 Aligned_cols=70 Identities=11% Similarity=0.144 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC------------cchhhHHHHHHHHHHhHhhcChHHHHHHHHHH
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPT------------SDRHYLAVLWGKLASEILVQNWDLALEDLNKL 79 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~------------~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kL 79 (449)
.+....++.+|..+++.|+|+.|.+++.......+. .+.....++...=.+-...++|+.|.+..+++
T Consensus 220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 455677999999999999999999999888774432 22333444555555566678999998888776
Q ss_pred HH
Q psy17612 80 RE 81 (449)
Q Consensus 80 ke 81 (449)
-+
T Consensus 300 l~ 301 (370)
T 1ihg_A 300 LE 301 (370)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 144
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=78.85 E-value=2.3 Score=38.15 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc
Q psy17612 13 DMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTS 48 (449)
Q Consensus 13 e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~ 48 (449)
+.+|.+|-+|-.+|+.|||++|.+++..+...-|+.
T Consensus 69 ~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 69 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 679999999999999999999999999999888754
No 145
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=78.82 E-value=6.1 Score=38.80 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHH
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYI 83 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~i 83 (449)
.++.....++.+|..++..|+|+.|.+++.....+.+.. ..+++.+=.+-...++++.|.+.++++.++-
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN----TKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 567778899999999999999999999999988877632 2344444445556789999999998887653
No 146
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=78.64 E-value=32 Score=29.76 Aligned_cols=68 Identities=19% Similarity=0.098 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
.|+..+.++.+|..++..|+|+.|.+++.......|.. ..++...-.+-...++++.|.+.++++-++
T Consensus 73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 73 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----NYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc----cHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44556789999999999999999999999988887643 234444445566678999999988887664
No 147
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=78.59 E-value=10 Score=34.77 Aligned_cols=73 Identities=14% Similarity=0.066 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHhc---CCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 13 DMMESMYKLAKFRYECGNYSITTSYLYFYLLV---MPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 13 e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l---~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
....++..+|.+|++.|+|+.|.+++...... .+........++...-.+-...++++.|.+..++.-++..+
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999987744 33221111245555555556678999999999988877654
No 148
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=78.26 E-value=7.5 Score=39.01 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcc-----------hhhHHHHHHHHHHhHhhcChHHHHHHHHHH
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSD-----------RHYLAVLWGKLASEILVQNWDLALEDLNKL 79 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~-----------~k~ls~lwgkla~eIl~~dwd~a~~~l~kL 79 (449)
.++..++++.+|..+++.|+|+.|..++.....+.+... .....++..+=.|-...++|+.|.+..+++
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 456778999999999999999999999999888876442 111344444555666778999999998887
Q ss_pred HHH
Q psy17612 80 REY 82 (449)
Q Consensus 80 ke~ 82 (449)
-++
T Consensus 344 l~~ 346 (457)
T 1kt0_A 344 LGL 346 (457)
T ss_dssp HHH
T ss_pred Hhc
Confidence 664
No 149
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=78.11 E-value=22 Score=31.81 Aligned_cols=76 Identities=16% Similarity=0.103 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-------cchhhHHHHHHHHHHh-HhhcChHHHHHHHHHHHHHH
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPT-------SDRHYLAVLWGKLASE-ILVQNWDLALEDLNKLREYI 83 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~-------~~~k~ls~lwgkla~e-Il~~dwd~a~~~l~kLke~i 83 (449)
.++.+.++..|..++..|+|+.|.+.+.......|+ .....-..+|.-++.- .-.++|+.|++...++-+++
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 457788999999999999999999999999988875 2111122356555543 33478999999999999987
Q ss_pred hcCC
Q psy17612 84 DGGS 87 (449)
Q Consensus 84 d~~~ 87 (449)
+..+
T Consensus 88 n~~~ 91 (159)
T 2hr2_A 88 NRRG 91 (159)
T ss_dssp HHHC
T ss_pred hccc
Confidence 7644
No 150
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=77.31 E-value=44 Score=30.63 Aligned_cols=72 Identities=10% Similarity=-0.010 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC--CcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 14 MMESMYKLAKFRYECGNYSITTSYLYFYLLVMP--TSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 14 ~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~--~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
....++.+|..++..|+|+.|.+++........ +++.....++...-.+-...++++.|.+.+.++-++..+
T Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 119 (406)
T 3sf4_A 46 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 119 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999999988776653 222332334444434455568999999999998888776
No 151
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=76.95 E-value=6.3 Score=31.56 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=43.6
Q ss_pred HHHHHHHHhhhhce---eeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeCCC
Q psy17612 222 ARLMIFETFCRIHQ---CISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQ 295 (449)
Q Consensus 222 aR~~ife~ycriy~---~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~~~ 295 (449)
....|+ .+++-.. .++. ..||++||+|...+.+.|-+|-.+|.+. +++...|.=....+
T Consensus 11 ~~~~IL-~~L~~~~pg~~~t~-------------~eLA~~Lgvsr~tV~~~L~~Le~~G~I~-~~g~~~~~W~i~~~ 72 (81)
T 1qbj_A 11 QEQRIL-KFLEELGEGKATTA-------------HDLSGKLGTPKKEINRVLYSLAKKGKLQ-KEAGTPPLWKIAVS 72 (81)
T ss_dssp HHHHHH-HHHHHHCTTCCBCH-------------HHHHHHHTCCHHHHHHHHHHHHHTTSEE-EESSSSCEEEEC--
T ss_pred HHHHHH-HHHHHcCCCCCcCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCEE-ecCCCCCeeEEeCc
Confidence 334444 4555666 8999 9999999999999999999999999884 34555566555444
No 152
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=76.59 E-value=64 Score=32.17 Aligned_cols=67 Identities=7% Similarity=-0.149 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCh-hhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHH
Q psy17612 11 KMDMMESMYKLAKFRYECGNY-SITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLRE 81 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY-~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke 81 (449)
+++..+.++.+|..++..|+| +.|.+++.....+.|.. ..++...=.+-...++++.|.+.+.++-+
T Consensus 98 ~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 165 (474)
T 4abn_A 98 AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKGDVTSAHTCFSGALT 165 (474)
T ss_dssp CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445578899999999999999 99999999988887643 22333333333445789888887776643
No 153
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=76.25 E-value=42 Score=33.01 Aligned_cols=176 Identities=10% Similarity=0.069 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhcCCCCC-CChH
Q psy17612 16 ESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGGSANF-ESPL 94 (449)
Q Consensus 16 d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~~~~~~-~~pl 94 (449)
.+++-+|..++..|+++.|.+++.......+. ...+.+.--...+-+.+++-+.|.+.++++++.-+.. -|. .+++
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~--~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~-~~~~d~~l 177 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEA--EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT-VSGDNEMI 177 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc-cccchHHH
Confidence 44678999999999999999999876544431 2347777777777888899999999999987764300 011 1122
Q ss_pred HHHHHHHHHHHHHHHHHhcCccchhhHHHHhcCCchhhhHHHhhhh----HHHHHHHHHHHhccccccchHHHHH-HHhh
Q psy17612 95 HLLQQRTWLIHWSLFVFFNHVKGRDLIIDMFLNRPHYLNAIQTMCP----HILRYLATAVIINRSKRNALKDLVK-VIQQ 169 (449)
Q Consensus 95 ~~l~qR~WliHwsLf~ffn~~~g~~~~iD~F~~~~~yl~aIqt~cp----~lLRYlvvA~Il~~~r~~~l~dlv~-vi~q 169 (449)
.+|- -.|. .+. .|.+..-++|. .|-.. ...+| ..+.|- +.+ ...+.+--..+++ ++..
T Consensus 178 ~~La-ea~v------~l~---~g~~~~q~A~~---~f~El-~~~~p~~~~~~lLln--~~~-~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 178 LNLA-ESYI------KFA---TNKETATSNFY---YYEEL-SQTFPTWKTQLGLLN--LHL-QQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHH-HHHH------HHH---HTCSTTTHHHH---HHHHH-HTTSCSHHHHHHHHH--HHH-HHTCHHHHHHHHHHHHSH
T ss_pred HHHH-HHHH------HHH---hCCccHHHHHH---HHHHH-HHhCCCcccHHHHHH--HHH-HcCCHHHHHHHHHHHHHh
Confidence 2221 2333 121 23333444444 33332 23344 223333 222 2233222222333 2222
Q ss_pred hc--------cCCCch--HHHHHHHHhhcccHHHHHHHHHHHhhhcccccchHHh
Q psy17612 170 ES--------YTYKDP--ITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVAC 214 (449)
Q Consensus 170 E~--------~~Y~Dp--iT~fv~~lYv~fdf~~aq~~L~~~~~vl~~DfFL~~~ 214 (449)
.+ .+ .|| +.+.+.+-|..-+ .|.+.+.+..++=.+++|+..+
T Consensus 241 ~p~~~~k~~~~p-~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 241 YYSVEQKENAVL-YKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHHTTTCHHHHS-SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred cccccccccCCC-CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 11 01 244 5566655565555 7888899999999999999877
No 154
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=75.61 E-value=13 Score=31.35 Aligned_cols=65 Identities=6% Similarity=-0.044 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHh
Q psy17612 13 DMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYID 84 (449)
Q Consensus 13 e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id 84 (449)
...-.++.+|..+++.|+|+.|.+++.... .+ . ..++...-.+-...++++.|.+...++-+.-.
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~---~~---~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 68 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ---DP---H-SRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS---SC---C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc---CC---C-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 344568999999999999999999887552 21 1 23444444444567899999999888776543
No 155
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=75.34 E-value=15 Score=29.44 Aligned_cols=67 Identities=18% Similarity=0.052 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHH
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLR 80 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLk 80 (449)
.+|+..++++.+|..+...|+++.|.+++.....+.|.. ..+++..-.+-...++++.|.+.+.++-
T Consensus 46 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~----~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 46 KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456778899999999999999999999999988888743 2233333334445567777777666553
No 156
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=74.62 E-value=13 Score=35.46 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 14 MMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 14 ~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
....++.+|..++..|+|+.|.+++.....+.|.. ..++..+=.+-...++++.|.+.++++-++
T Consensus 195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN----EKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 36889999999999999999999999998887643 234444444556678999999999888665
No 157
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=73.99 E-value=61 Score=32.37 Aligned_cols=67 Identities=9% Similarity=0.062 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHH-hHhh---------cChHHHHHHHHHH
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLAS-EILV---------QNWDLALEDLNKL 79 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~-eIl~---------~dwd~a~~~l~kL 79 (449)
++|+..++++.+|..|+..|+|+.|.+++.......|. . ..|..++. -... ++++.|.+.++++
T Consensus 132 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~---~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~a 205 (474)
T 4abn_A 132 LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN---K---VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA 205 (474)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC---H---HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---H---HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHH
Confidence 35666789999999999999999999999998888764 1 22333332 2233 5677777776666
Q ss_pred HHH
Q psy17612 80 REY 82 (449)
Q Consensus 80 ke~ 82 (449)
-++
T Consensus 206 l~~ 208 (474)
T 4abn_A 206 VQM 208 (474)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
No 158
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=73.61 E-value=4.6 Score=43.95 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
++|+..++++.+|..+.+.|+|++|.+++.....+-|+. ..++...-.+-...++|+.|.+..+++.++...
T Consensus 106 l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~----~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 106 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF----PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 355667778888888888888888888888777776532 234444444555667888888888888776654
No 159
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=73.48 E-value=13 Score=34.32 Aligned_cols=67 Identities=10% Similarity=-0.021 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhh---HHHHHHHHHHhHhhcChHHHHHHHHHHH
Q psy17612 14 MMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHY---LAVLWGKLASEILVQNWDLALEDLNKLR 80 (449)
Q Consensus 14 ~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~---ls~lwgkla~eIl~~dwd~a~~~l~kLk 80 (449)
..+.+..+|.++.+.|+|+.|.+++.......+..+... ...+...-.|-...++++.|.+.+++.-
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356789999999999999999999999998887543321 1133333344555678888877666543
No 160
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=73.14 E-value=12 Score=34.33 Aligned_cols=73 Identities=14% Similarity=0.069 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC---CcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 13 DMMESMYKLAKFRYECGNYSITTSYLYFYLLVMP---TSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 13 e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~---~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
.....+..+|.+|++.|+|+.|.+++........ ........++...-.+=+..++++.|.+.++++-++..+
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3466789999999999999999999988775432 233333445555555556668999999999888887765
No 161
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=72.96 E-value=6.6 Score=32.69 Aligned_cols=68 Identities=12% Similarity=-0.105 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHH-HhHhhcChHHHHHH-HHHHHHH
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLA-SEILVQNWDLALED-LNKLREY 82 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla-~eIl~~dwd~a~~~-l~kLke~ 82 (449)
++|+..++++.+|..+...|+|+.|.+++.....+.|... . .|-.++ +-...++++.|.+. ++++-++
T Consensus 60 ~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~-~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 60 VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK----D-LVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----H-HHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH----H-HHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 4677788999999999999999999999999888877432 2 233333 23344566655544 5655443
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=72.94 E-value=8.6 Score=35.61 Aligned_cols=63 Identities=11% Similarity=0.034 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHH
Q psy17612 15 MESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLRE 81 (449)
Q Consensus 15 ~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke 81 (449)
.++++.+|..++..|+|+.|.+++.......|.. ...+...=.+-...++|+.|.+.+.++-+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~ 66 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALE 66 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5688999999999999999999999888887642 22333333445567899999888776643
No 163
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=71.62 E-value=68 Score=30.16 Aligned_cols=68 Identities=10% Similarity=0.110 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCC--cchhhHHHHHHHHH-HhHhhcChHHHHHHHHHHHHHHhcC
Q psy17612 18 MYKLAKFRYECGNYSITTSYLYFYLLVMPT--SDRHYLAVLWGKLA-SEILVQNWDLALEDLNKLREYIDGG 86 (449)
Q Consensus 18 lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~--~~~k~ls~lwgkla-~eIl~~dwd~a~~~l~kLke~id~~ 86 (449)
.+-.|.+++..|+|+.|.+++.....+... ++.. ....+..++ +-...++++.|.+...+..++..+.
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIE-KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHH-HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 455788999999999999999998877652 2222 223333333 3445679999999999999988873
No 164
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=71.37 E-value=82 Score=31.01 Aligned_cols=68 Identities=4% Similarity=-0.064 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHh-Hhhc-ChHHHHHHHHHHHH
Q psy17612 9 QFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASE-ILVQ-NWDLALEDLNKLRE 81 (449)
Q Consensus 9 ~~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~e-Il~~-dwd~a~~~l~kLke 81 (449)
.++|+..++++.+|.++...|+|+.|.+.+.....+-|... ..|-.++.- ...+ +++.|++.+.++-+
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~-----~a~~~~g~~l~~~g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY-----TVWHFRRVLLKSLQKDLHEEMNYITAIIE 160 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH-----HHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 57889999999999999999999999999998888876421 223333322 2234 38888877776644
No 165
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=70.43 E-value=12 Score=34.82 Aligned_cols=68 Identities=6% Similarity=-0.028 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchh--hHHHHHHHHHHhHhhcChHHHHHHHHHHH
Q psy17612 13 DMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRH--YLAVLWGKLASEILVQNWDLALEDLNKLR 80 (449)
Q Consensus 13 e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k--~ls~lwgkla~eIl~~dwd~a~~~l~kLk 80 (449)
.....+..+|.++...|+|+.|.+++.......+..+.. ....+.+...+-...++++.|.+.+++.-
T Consensus 153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 445677888888888888888888888777766533221 12233344344444577888877777664
No 166
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=70.24 E-value=87 Score=30.83 Aligned_cols=67 Identities=7% Similarity=0.007 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCC-hhhHHHHHHHHHhcCCCcchhhHHHHHHHHHH-hHhhcChHHHHHHHHHHHH
Q psy17612 10 FKMDMMESMYKLAKFRYECGN-YSITTSYLYFYLLVMPTSDRHYLAVLWGKLAS-EILVQNWDLALEDLNKLRE 81 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~Gd-Y~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~-eIl~~dwd~a~~~l~kLke 81 (449)
+.|+..++++.+|..+...|+ |+.|.+++.....+-|... ..|.-++. -...++++.|++...++-+
T Consensus 126 l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~-----~a~~~~g~~~~~~g~~~eAl~~~~kal~ 194 (382)
T 2h6f_A 126 LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY-----QVWHHRRVLVEWLRDPSQELEFIADILN 194 (382)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456677889999999999996 9999999999888876432 23333332 2334678888887776644
No 167
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=70.17 E-value=11 Score=31.75 Aligned_cols=65 Identities=14% Similarity=-0.019 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHH
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLN 77 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~ 77 (449)
.|+..+.++.+|..+...|+|+.|.+.+.......|+.... .+....-.+-...++.+.|.....
T Consensus 104 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~--~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 104 NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDG--EVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTT--HHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChH--HHHHHHHHHHHHhCCCCcHHHHHH
Confidence 45667889999999999999999999999888877643211 122222223334456666665544
No 168
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=70.10 E-value=20 Score=36.26 Aligned_cols=84 Identities=10% Similarity=-0.018 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHH----hcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYL----LVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~----~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
-.+.+...+..+|..|...|+|++|.++..... ...++.++..+..+...=..-.-.++++.|.+-++++-++++.
T Consensus 324 ~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 324 INIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999998877644 3345566664544444433444456899999999999999987
Q ss_pred CCCCCCChH
Q psy17612 86 GSANFESPL 94 (449)
Q Consensus 86 ~~~~~~~pl 94 (449)
.- ...||.
T Consensus 404 ~l-G~~Hp~ 411 (429)
T 3qwp_A 404 TH-GREHSL 411 (429)
T ss_dssp HT-CTTSHH
T ss_pred hc-CCCChH
Confidence 31 234665
No 169
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=69.97 E-value=26 Score=32.57 Aligned_cols=74 Identities=12% Similarity=0.027 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcch-hhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDR-HYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~-k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
+.....+..+|..++..|+++.|.+++......++..+. ....+++..-.+....++++.|.+.+.+..++...
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 456677888999999999999999999998888764332 22344444445566778999999999988877655
No 170
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=69.67 E-value=16 Score=33.67 Aligned_cols=73 Identities=12% Similarity=0.045 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHH-HHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGK-LASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgk-la~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
|+..+.++.+|.++.+.|+++.|..++......++-...+ ...+|.. ...+...++++.|.+-..++.+....
T Consensus 200 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~-~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 200 GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK-SGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 3445777888999999999999999999888864211111 2345544 44566678888888777777766554
No 171
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=69.48 E-value=90 Score=30.71 Aligned_cols=64 Identities=14% Similarity=-0.108 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHH
Q psy17612 13 DMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLR 80 (449)
Q Consensus 13 e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLk 80 (449)
.....++.+|..++++|+|+.|.+++.......+.+. ..+.....+-...++++.|.+...++.
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNL----DVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCC----TTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccH----HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4567788888999999999999988888776665321 223333344445678888877766654
No 172
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=68.81 E-value=14 Score=34.04 Aligned_cols=71 Identities=8% Similarity=-0.087 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
.|+....++.+|..++..|+|+.|.+.+.....+.++. . .++...=.+-...++|+.|.+.+.++-++-..
T Consensus 34 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~---~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 34 NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-V---KAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-H---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 44556789999999999999999999999888876633 2 23333333345567999999999888776554
No 173
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=68.64 E-value=22 Score=32.38 Aligned_cols=73 Identities=8% Similarity=0.063 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHh--HhhcChHHHHHHHHHHHHHHh
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASE--ILVQNWDLALEDLNKLREYID 84 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~e--Il~~dwd~a~~~l~kLke~id 84 (449)
++..+.+...+..++..|+|+.|.+++.......+..+.......|-..... ...++++.|.+.+.++-+...
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 146 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 4556677889999999999999999998877766533222222233222222 333589999888777654433
No 174
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=68.52 E-value=10 Score=28.35 Aligned_cols=38 Identities=13% Similarity=-0.040 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTS 48 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~ 48 (449)
.|+....++.+|..++..|+|+.|.+++.......|+.
T Consensus 34 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 34 QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 45556789999999999999999999999999888754
No 175
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=68.46 E-value=23 Score=36.15 Aligned_cols=83 Identities=16% Similarity=0.191 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhc----CCCcchhhHHHHHHHHHHhHh-hcChHHHHHHHHHHHHHHhc
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLV----MPTSDRHYLAVLWGKLASEIL-VQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l----~~~~~~k~ls~lwgkla~eIl-~~dwd~a~~~l~kLke~id~ 85 (449)
.|.+..++..+|..|.+.|+|++|.+++...... ..++++. ....+..||.-.. .++++.|.+-++++-++.+.
T Consensus 336 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~-~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 336 NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN-VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999888775443 3455565 4455555654443 35899999999999998887
Q ss_pred CCCCCCChHH
Q psy17612 86 GSANFESPLH 95 (449)
Q Consensus 86 ~~~~~~~pl~ 95 (449)
.- ...||..
T Consensus 415 ~l-G~~Hp~~ 423 (433)
T 3qww_A 415 AH-GKDHPYI 423 (433)
T ss_dssp HT-CTTCHHH
T ss_pred Hc-CCCChHH
Confidence 31 2346653
No 176
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=68.27 E-value=15 Score=30.46 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHH-HHhcCCh--hhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 13 DMMESMYKLAKF-RYECGNY--SITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 13 e~~d~lyk~Akf-~y~~GdY--~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
+..+.++.+|.. ++..|+| +.|.+++.......|.. ..+++..-.+-...++++.|.+.+.++-+.
T Consensus 76 ~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE----ITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 345678899999 8899999 99999999988887643 223444444556678999998888776553
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=68.17 E-value=14 Score=36.93 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 14 MMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 14 ~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
...+++.+|..++..|+|+.|.+++.....+-+.. ..+++.+=.+-...++++.|.+.++++-++
T Consensus 316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN----EKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 36789999999999999999999999998887642 335555555666678999999998887553
No 178
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=67.90 E-value=1.1e+02 Score=32.13 Aligned_cols=70 Identities=13% Similarity=0.104 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 9 QFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 9 ~~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
...|+..++++.+|..+++.|+|+.|.+.+......-+.+ ..+++..=.+-...++++.|.+..+++-++
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 496 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR----WRLVWYRAVAELLTGDYDSATKHFTEVLDT 496 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5567778999999999999999999999999988877643 224444444455678999999988877554
No 179
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=67.71 E-value=5.2 Score=35.45 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcch
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDR 50 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~ 50 (449)
...+|.||-+|-=+|+.|||++|.+++..+...-|++.+
T Consensus 75 ~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 75 SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 468999999999999999999999999999998886544
No 180
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=67.51 E-value=76 Score=29.11 Aligned_cols=64 Identities=13% Similarity=-0.108 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHH
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKL 79 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kL 79 (449)
|+..+.++.+|..+.+.|+++.|.+.+......-|+. ..++.+.-.+-+..++++.|.+.+.++
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~l~~~ 177 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN----GEIGLLLAETLIALNRSEDAEAVLXTI 177 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc----hhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4456788999999999999999999999998888743 234555555566678888887766544
No 181
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=67.44 E-value=5.3 Score=35.78 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcch
Q psy17612 13 DMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDR 50 (449)
Q Consensus 13 e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~ 50 (449)
..+|.||-+|-=+|+.|||++|..++..+...-|++.+
T Consensus 75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 68999999999999999999999999999999886544
No 182
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=67.40 E-value=16 Score=36.91 Aligned_cols=32 Identities=13% Similarity=0.036 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q psy17612 14 MMESMYKLAKFRYECGNYSITTSYLYFYLLVM 45 (449)
Q Consensus 14 ~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~ 45 (449)
..++++.+|..++..|+|+.|.+++.......
T Consensus 56 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 87 (568)
T 2vsy_A 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAA 87 (568)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 33444444444444444444444444444443
No 183
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=67.29 E-value=8.3 Score=30.67 Aligned_cols=65 Identities=12% Similarity=0.009 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 14 MMESMYKLAKFRYECGN---YSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 14 ~~d~lyk~Akf~y~~Gd---Y~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
.-+.++.+|..+|-.|+ .+.|..+|......-|.. .+ ...++|..+ +..++++.|.+...++-+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~-~r-A~~~lg~~~--~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN-EA-ALSLIANDH--FISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC-HH-HHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC-HH-HHHHHHHHH--HHcCCHHHHHHHHHHHHhh
Confidence 34566666776665555 567777777666666532 32 344555544 3366677777766665543
No 184
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=65.84 E-value=10 Score=28.30 Aligned_cols=38 Identities=11% Similarity=0.096 Sum_probs=32.4
Q ss_pred CHHHHH-HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc
Q psy17612 11 KMDMME-SMYKLAKFRYECGNYSITTSYLYFYLLVMPTS 48 (449)
Q Consensus 11 ~~e~~d-~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~ 48 (449)
.|+... .++.+|..++..|+|+.|.+++.......|..
T Consensus 30 ~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 30 EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 344456 89999999999999999999999999888754
No 185
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=65.12 E-value=14 Score=28.58 Aligned_cols=49 Identities=10% Similarity=0.192 Sum_probs=39.1
Q ss_pred HHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceec
Q psy17612 222 ARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKID 284 (449)
Q Consensus 222 aR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKID 284 (449)
.+..|+..+.+ +..++. ..||+.+|+++.-+-+.|-.|...|-+...-|
T Consensus 21 ~~~~il~~l~~-~~~~s~-------------~ela~~l~is~~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 21 SDVRIYSLLLE-RGGMRV-------------SEIARELDLSARFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp HHHHHHHHHHH-HCCBCH-------------HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHH-cCCCCH-------------HHHHHHHCCCHHHHHHHHHHHHHCCCEEEEee
Confidence 34455554433 577899 99999999999999999999999998876544
No 186
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=64.57 E-value=90 Score=28.93 Aligned_cols=68 Identities=16% Similarity=-0.030 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHH
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLRE 81 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke 81 (449)
++|+..++++.+|..++..|+++.|.+.+.......|+.. . .....-.+-...++++.|.+...++-+
T Consensus 96 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~---~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 96 LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY-C---VRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT-H---HHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-H---HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4577778899999999999999999999888877766321 1 111122223345788888877766654
No 187
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.25 E-value=10 Score=36.77 Aligned_cols=67 Identities=12% Similarity=0.068 Sum_probs=46.9
Q ss_pred hcccHHHHHHHHHHHhhhcccccch-HHhHHHHHHHHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCC-HH
Q psy17612 187 VSFDFESAREKLTECTEVLDNDFFL-VACLDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMG-TD 264 (449)
Q Consensus 187 v~fdf~~aq~~L~~~~~vl~~DfFL-~~~~d~fvenaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms-~~ 264 (449)
-.-+|..+++.+..... -.++ .-.++-|+..+|..|....++.|++|++ +.+++.|+.+ ++
T Consensus 153 ~eGnY~kff~l~~~~~~----p~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l-------------~~~~~~L~F~s~~ 215 (274)
T 4b4t_T 153 MEGSYQKAWDLLQSGSQ----NISEFDSFTDILKSAIRDEIAKNTELSYDFLPL-------------SNIKALLFFNNEK 215 (274)
T ss_dssp HHTCSHHHHHHHHTCTT----CCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCH-------------HHHHHHHTCCSHH
T ss_pred HcCCHHHHHHHHhcCCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH-------------HHHHHHhCCCCHH
Confidence 33455555655544221 1222 3346889999999999999999999999 9999999985 44
Q ss_pred HHHHHH
Q psy17612 265 EAECWI 270 (449)
Q Consensus 265 e~E~wI 270 (449)
|+..++
T Consensus 216 e~~~F~ 221 (274)
T 4b4t_T 216 ETEKFA 221 (274)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544444
No 188
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=64.13 E-value=8.8 Score=30.51 Aligned_cols=44 Identities=7% Similarity=0.057 Sum_probs=35.8
Q ss_pred HHHHHHHhhhhc------eeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccc
Q psy17612 223 RLMIFETFCRIH------QCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARL 279 (449)
Q Consensus 223 R~~ife~ycriy------~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rL 279 (449)
|..-.-.|++-+ ..+++ ..||+.||+|+.-|.+-|..|-..|.|
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv-------------~EIa~~lgvS~~TVrr~L~~Le~kG~I 54 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKT-------------RDIADAAGLSIYQVRLYLEQLHDVGVL 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEH-------------HHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHhhccCCCcCH-------------HHHHHHHCCCHHHHHHHHHHHHHCCcE
Confidence 344444555555 67999 999999999999999999999888876
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=63.27 E-value=31 Score=35.73 Aligned_cols=83 Identities=6% Similarity=-0.024 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhc----CCCcchhhHHHHHHHHHHhHh-hcChHHHHHHHHHHHHHHhc
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLV----MPTSDRHYLAVLWGKLASEIL-VQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l----~~~~~~k~ls~lwgkla~eIl-~~dwd~a~~~l~kLke~id~ 85 (449)
.|.+..++..+|..|.+.|+|++|..++...... ...+++. ....+..||.-.. .++++.|..-++++-++.+.
T Consensus 347 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~-~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~ 425 (490)
T 3n71_A 347 NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ-LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLV 425 (490)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999887764433 3455555 3444445554333 46899999999999998887
Q ss_pred CCCCCCChHH
Q psy17612 86 GSANFESPLH 95 (449)
Q Consensus 86 ~~~~~~~pl~ 95 (449)
.. ...||..
T Consensus 426 ~l-G~~Hp~~ 434 (490)
T 3n71_A 426 TH-GPSHPIT 434 (490)
T ss_dssp HT-CTTSHHH
T ss_pred Hh-CCCChHH
Confidence 31 2346643
No 190
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=62.78 E-value=7.5 Score=28.04 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPT 47 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~ 47 (449)
.|+....++.+|..++..|+|+.|.+++.......|.
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 39 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3455678999999999999999999999998888764
No 191
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=62.64 E-value=15 Score=28.29 Aligned_cols=51 Identities=16% Similarity=0.125 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHccccccee
Q psy17612 219 VENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKI 283 (449)
Q Consensus 219 venaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKI 283 (449)
-...|..|+....+ +..++. ..||+.+|+|+.-+-+-|-+|...|-+...-
T Consensus 14 ~~~~~~~iL~~L~~-~~~~~~-------------~ela~~l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 14 GNPVRLGIMIFLLP-RRKAPF-------------SQIQKVLDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HSHHHHHHHHHHHH-HSEEEH-------------HHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CChHHHHHHHHHHh-cCCcCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 34557777776543 567999 9999999999999999999999999887655
No 192
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=62.50 E-value=20 Score=36.23 Aligned_cols=70 Identities=11% Similarity=-0.050 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 9 QFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 9 ~~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
...|+..++++.+|..++..|+|+.|.+++.......+.. ..++...=.+-...++++.|.+.++++-++
T Consensus 17 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 86 (568)
T 2vsy_A 17 RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH----PEAVARLGRVRWTQQRHAEAAVLLQQASDA 86 (568)
T ss_dssp ----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4566778899999999999999999999999988887643 223333333445568899998888877654
No 193
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=62.01 E-value=19 Score=36.39 Aligned_cols=68 Identities=9% Similarity=-0.013 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
.|+...+++.+|..+++.|+|+.|.+++.....+.+.. ..++..+=.+-...++++.|.+.++++-++
T Consensus 36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45567889999999999999999999999988886632 222332223334567899999988887665
No 194
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=61.30 E-value=23 Score=32.78 Aligned_cols=75 Identities=4% Similarity=-0.016 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc-chhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTS-DRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~-~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
..+....+..+|..|.+.|+|+.|.+++.....+.... +.......|..++.-...++++.|.+...+.-++...
T Consensus 72 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~g~~~~A~~~~~~Al~~~~~ 147 (307)
T 2ifu_A 72 LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFEN 147 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 34455555666666666666666666555544443211 1111223333333222225555555555555554443
No 195
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=60.89 E-value=34 Score=29.65 Aligned_cols=65 Identities=14% Similarity=0.086 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHH----------------HHHHhHhhcChHHHHHHHH
Q psy17612 14 MMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWG----------------KLASEILVQNWDLALEDLN 77 (449)
Q Consensus 14 ~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwg----------------kla~eIl~~dwd~a~~~l~ 77 (449)
..+.++..|..+++.|+|+.|.+++.......|.+. .+... .=.+-...++++.|.+.++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT----EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH----HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh----HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 367899999999999999999999998888776321 12211 1122344578999988887
Q ss_pred HHHHH
Q psy17612 78 KLREY 82 (449)
Q Consensus 78 kLke~ 82 (449)
++-++
T Consensus 79 ~al~~ 83 (208)
T 3urz_A 79 ELLQK 83 (208)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76553
No 196
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=60.56 E-value=23 Score=35.35 Aligned_cols=73 Identities=12% Similarity=0.045 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHH-HHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGK-LASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgk-la~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
|+..+.+..+|.++...|++++|..++......++.+... ...+|.. +..|...+|.+.+.+-..++.+....
T Consensus 422 p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~-~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 422 GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK-SGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 4445778889999999999999999999888876543222 3456644 55677788888888888888877764
No 197
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=60.50 E-value=18 Score=28.85 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceec
Q psy17612 221 NARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKID 284 (449)
Q Consensus 221 naR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKID 284 (449)
..|..|+..+ .+..+++ ..||+.+|+|+.-+-+.|-.|...|-+...-+
T Consensus 21 ~~r~~IL~~L--~~~~~~~-------------~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 21 ETRWEILTEL--GRADQSA-------------SSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp HHHHHHHHHH--HHSCBCH-------------HHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hHHHHHHHHH--HcCCCCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 4677777765 3566889 99999999999999999999999998876555
No 198
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=60.33 E-value=1.1e+02 Score=28.35 Aligned_cols=68 Identities=15% Similarity=0.065 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 13 DMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 13 e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
+..++++.+|.++...|+++.|.+.+.......|+.....+...|..+.. ..++++.|.+.+.++-+.
T Consensus 128 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~--~~~~~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAA--GGEKLQDAYYIFQEMADK 195 (291)
T ss_dssp CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh--CchHHHHHHHHHHHHHHh
Confidence 44678899999999999999999999999888764322223233444432 235677777776665543
No 199
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=60.22 E-value=21 Score=34.13 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 16 ESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 16 d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
..++.+|..++..|+|+.|.+++.......+.. ..+++.+=.+-...++++.|.+.+.++-++
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN----PKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 378899999999999999999999988877632 234444444556678999999888776543
No 200
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=58.35 E-value=52 Score=29.33 Aligned_cols=70 Identities=10% Similarity=0.011 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhc-------CCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 16 ESMYKLAKFRYECGNYSITTSYLYFYLLV-------MPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 16 d~lyk~Akf~y~~GdY~~A~~~L~~~~~l-------~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
.+++.+|..+.+.|+|+.|.+.+.....+ -|+...-.+.++..+=.+-.-+++++.|.+..++.-++...
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 48899999999999999999999998887 55322221222255545555667999999999999988766
No 201
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=58.24 E-value=15 Score=28.23 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=34.7
Q ss_pred HHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHccccc
Q psy17612 224 LMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLD 280 (449)
Q Consensus 224 ~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLd 280 (449)
..|++-+ .-...+++ ..||+.||+|+.-+-+.|-.|...|-+.
T Consensus 3 ~~Il~~L-~~~~~~s~-------------~eLa~~lgvs~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 3 NEILEFL-NRHNGGKT-------------AEIAEALAVTDYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp HHHHHHH-HHSCCCCH-------------HHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHH-HHcCCCCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3444433 33466888 9999999999999999999999999886
No 202
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=58.20 E-value=28 Score=26.83 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecc
Q psy17612 220 ENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDS 285 (449)
Q Consensus 220 enaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs 285 (449)
...|..|+..+. -...+++ ..||+.||+|+.-+-+.|-.|...|-+...-|.
T Consensus 23 ~~~~~~il~~l~-~~~~~s~-------------~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~ 74 (99)
T 3cuo_A 23 HPKRLLILCMLS-GSPGTSA-------------GELTRITGLSASATSQHLARMRDEGLIDSQRDA 74 (99)
T ss_dssp SHHHHHHHHHHT-TCCSEEH-------------HHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred ChHHHHHHHHHH-hCCCcCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 356777776554 4668999 999999999999999999999999988665443
No 203
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=57.82 E-value=30 Score=27.16 Aligned_cols=74 Identities=15% Similarity=0.142 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhhcee---eEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeCCCCCC
Q psy17612 222 ARLMIFETFCRIHQC---ISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLS 298 (449)
Q Consensus 222 aR~~ife~ycriy~~---IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~~~~~s 298 (449)
....++..++.-... ++. ..||+.+|+++.-+=+.|-+|...|=+...-|.....|..+
T Consensus 13 ~~~~iL~~l~~~~~~~~~~t~-------------~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT----- 74 (95)
T 2qvo_A 13 KALEILMTIYYESLGGNDVYI-------------QYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLT----- 74 (95)
T ss_dssp HHHHHHHHHHHHHHTTCCEEH-------------HHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC-----
T ss_pred hHHHHHHHHHHccCCCCCcCH-------------HHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEC-----
Confidence 334444444443344 999 99999999999999999999999998843334433344443
Q ss_pred hHHHHHHhhhhhhhHHHHHHH
Q psy17612 299 PYQQLLEKIDTLSVRSEALQA 319 (449)
Q Consensus 299 ~Yqqviek~d~L~~R~q~L~~ 319 (449)
++|..+..++....+
T Consensus 75 ------~~G~~~~~~~~~~~~ 89 (95)
T 2qvo_A 75 ------DKGQKIAQQIKSIID 89 (95)
T ss_dssp ------HHHHHHHHHHHHHHH
T ss_pred ------hhHHHHHHHHHHHHH
Confidence 455555555444433
No 204
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=57.74 E-value=22 Score=34.00 Aligned_cols=71 Identities=8% Similarity=-0.056 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcch-----h--------hHHHHHHHHHHhHhhcChHHHHHHHHH
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDR-----H--------YLAVLWGKLASEILVQNWDLALEDLNK 78 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~-----k--------~ls~lwgkla~eIl~~dwd~a~~~l~k 78 (449)
++..+.++.+|..++..|+|+.|..++.......+.... + ...++...=.|-...++|+.|.+...+
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 457788999999999999999999999988877763210 0 012333444445556799999998887
Q ss_pred HHHH
Q psy17612 79 LREY 82 (449)
Q Consensus 79 Lke~ 82 (449)
+-++
T Consensus 256 al~~ 259 (338)
T 2if4_A 256 VLTE 259 (338)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 205
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=57.63 E-value=25 Score=30.30 Aligned_cols=64 Identities=17% Similarity=0.080 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeCCCCC
Q psy17612 220 ENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPL 297 (449)
Q Consensus 220 enaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~~~~~ 297 (449)
-..|.+++-.-...-+.+++ +.||+.+|+|+..+++.+..|-+.|=+..+= -.+|-....+++.
T Consensus 12 yAl~~L~~La~~~~~~~~s~-------------~~IA~~~~i~~~~l~kil~~L~~aGlv~s~r-G~~GGy~Lar~p~ 75 (143)
T 3t8r_A 12 YGLTLMISLAKKEGQGCISL-------------KSIAEENNLSDLYLEQLVGPLRNAGLIRSVR-GAKGGYQLRVPAE 75 (143)
T ss_dssp HHHHHHHHHHTTTTSCCEEH-------------HHHHHHTTCCHHHHHHHHHHHHHTTSEEECS-SSSSEEEESSCGG
T ss_pred HHHHHHHHHHhCCCCCCcCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCEEEecC-CCCCCeeecCCcc
Confidence 34566665554333346999 9999999999999999999999888766532 2345566666653
No 206
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=56.68 E-value=5.8 Score=33.44 Aligned_cols=62 Identities=15% Similarity=0.053 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHH
Q psy17612 14 MMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKL 79 (449)
Q Consensus 14 ~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kL 79 (449)
-.+.++.+|..+...|+|+.|...+.......|+. ..++.+.-.+-+..++++.|.+.++++
T Consensus 5 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSR----GDVKLAKADCLLETKQFELAQELLATI 66 (176)
T ss_dssp -CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS----HHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 35678999999999999999999888766655532 334444444455678888887766543
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=56.54 E-value=9.2 Score=29.47 Aligned_cols=36 Identities=14% Similarity=0.039 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMP 46 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~ 46 (449)
+|+..++++.+|..++..|+|+.|.+++.....+.+
T Consensus 37 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 37 DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 455667899999999999999999999998887765
No 208
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=56.41 E-value=49 Score=25.44 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=41.3
Q ss_pred HHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecc
Q psy17612 222 ARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDS 285 (449)
Q Consensus 222 aR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs 285 (449)
.+..++..+++.+..++. ..||+.+|+|+.-+-+.|-.|...|-+...-+.
T Consensus 22 ~~~~~l~~l~~~~~~~t~-------------~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~ 72 (109)
T 2d1h_A 22 TDVAVLLKMVEIEKPITS-------------EELADIFKLSKTTVENSLKKLIELGLVVRTKTE 72 (109)
T ss_dssp HHHHHHHHHHHHCSCEEH-------------HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred HHHHHHHHHHHcCCCCCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccc
Confidence 455566666666788999 999999999999999999999999988765443
No 209
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=56.10 E-value=15 Score=31.94 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=49.7
Q ss_pred cccchHHhHHHHHHHHHHHHHHHhhhh----ceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccc-
Q psy17612 207 NDFFLVACLDEFVENARLMIFETFCRI----HQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDA- 281 (449)
Q Consensus 207 ~DfFL~~~~d~fvenaR~~ife~ycri----y~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLda- 281 (449)
...+|..+.+-.+...-.+++-++.+- ..-.+. +.||+++|+++.++.+.|-+||..|=|.=
T Consensus 18 p~~LL~~y~~LgLs~~E~~lLl~L~~~~~~g~~~ps~-------------~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 18 PNLLLTHYKQLGLNETELILLLKIKMHLEKGSYFPTP-------------NQLQEGMSISVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp EHHHHHHHHHHTCCHHHHHHHHHHHHHHTTTCCSCCH-------------HHHHTTSSSCHHHHHHHHHHHHHHTSCEEE
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCCCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 344555555556777777777777663 455667 99999999999999999999999997753
Q ss_pred -eeccc
Q psy17612 282 -KIDSK 286 (449)
Q Consensus 282 -KIDs~ 286 (449)
+.|..
T Consensus 85 ~~~d~~ 90 (135)
T 2v79_A 85 ECEDQN 90 (135)
T ss_dssp EEECTT
T ss_pred eEecCC
Confidence 44553
No 210
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=54.64 E-value=1.3e+02 Score=27.44 Aligned_cols=77 Identities=10% Similarity=-0.003 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcch-hhHHHHHHHHHHhHh--hcChHHHHHHHHHHHHHHhc
Q psy17612 9 QFKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDR-HYLAVLWGKLASEIL--VQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 9 ~~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~-k~ls~lwgkla~eIl--~~dwd~a~~~l~kLke~id~ 85 (449)
|-.+....++..+|..|.+.|+|+.|.+++.....+.+..+. ......|..++.-.. .++++.|.+...+.-++...
T Consensus 71 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~ 150 (292)
T 1qqe_A 71 GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ 150 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Confidence 444556788999999999999999999999887777653322 123345555554333 27899999999888887765
No 211
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=54.11 E-value=34 Score=30.41 Aligned_cols=63 Identities=14% Similarity=0.054 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeCCCCC
Q psy17612 221 NARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPL 297 (449)
Q Consensus 221 naR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~~~~~ 297 (449)
..|.+++-.-...-+.+++ +.||+.+|+|+..+++.+..|-+.|=+..+=. ..|-....+++.
T Consensus 29 Alr~L~~LA~~~~~~~~s~-------------~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG-~~GGy~Lar~p~ 91 (159)
T 3lwf_A 29 GLTITLELAKRIGDGPISL-------------RSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG-AHGGYVLNGDPE 91 (159)
T ss_dssp HHHHHHHHHHTTTSCCBCH-------------HHHHHHHTCCHHHHHHHHHHHHHTTSEEEECS-TTCEEEECSCTT
T ss_pred HHHHHHHHHhcCCCCCcCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCeEEEecC-CCCceEecCCHH
Confidence 4555555444333346889 99999999999999999999999987765533 344566666664
No 212
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=53.88 E-value=9.2 Score=29.93 Aligned_cols=38 Identities=13% Similarity=0.039 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTS 48 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~ 48 (449)
.|+..+.++.+|..++..|+|+.|.+++.......|.+
T Consensus 57 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 57 FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 45667889999999999999999999999988887643
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=50.84 E-value=51 Score=25.93 Aligned_cols=41 Identities=5% Similarity=-0.067 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchh
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRH 51 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k 51 (449)
.+|+...+++-+|..+++.|+|..|.+++.......+. +..
T Consensus 38 ~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 38 LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 56778899999999999999999999999999888876 444
No 214
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=50.27 E-value=7.8 Score=31.33 Aligned_cols=61 Identities=7% Similarity=0.098 Sum_probs=47.8
Q ss_pred ccchHHhHHHHHHHHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccc
Q psy17612 208 DFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDA 281 (449)
Q Consensus 208 DfFL~~~~d~fvenaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLda 281 (449)
++-+...........|+.|+....++-+.++. ..||+.||+|..-+-+-|-.|...|-+..
T Consensus 5 ~~~~~~~~~~~~~~~~l~Il~~l~~~g~~~s~-------------~eLa~~lgvs~~tV~~~L~~L~~~GlV~~ 65 (110)
T 1q1h_A 5 EDLFINLAKSLLGDDVIDVLRILLDKGTEMTD-------------EEIANQLNIKVNDVRKKLNLLEEQGFVSY 65 (110)
T ss_dssp TTHHHHHHHTTSCSTTHHHHHHHHHHCSCBCH-------------HHHHHTTTSCHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHcCCCCCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 34444444444455677888877777767899 99999999999999999999999998765
No 215
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=49.76 E-value=1.5e+02 Score=29.71 Aligned_cols=130 Identities=13% Similarity=0.095 Sum_probs=83.5
Q ss_pred HHHHhhh-hceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHccccccee----cc--------cCCEEEe
Q psy17612 226 IFETFCR-IHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKI----DS--------KLGHVIM 292 (449)
Q Consensus 226 ife~ycr-iy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKI----Ds--------~~G~V~m 292 (449)
|+..|=. .+.++++ +.|++.+||+.+++.+-|..|+..+|+.+|| .. .++++..
T Consensus 204 ILllFn~~~~~~lt~-------------~ei~~~t~i~~~~L~r~L~sL~~~~k~k~~iL~~~~~~~~~~~~~~~d~f~~ 270 (382)
T 3dpl_C 204 VLFAWNQRPREKISF-------------ENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSV 270 (382)
T ss_dssp HHGGGTTCTTCCEEH-------------HHHHHHHCCCHHHHHHHHHHHHCCTTCSSCSEEESSCCSSGGGCCTTCEEEE
T ss_pred HHHHhccCCCCcCcH-------------HHHHHHHCcCHHHHHHHHHHHhcccchhcceeeecCCccccCcCCCCCEEEE
Confidence 3444433 3678999 9999999999999999999998765544333 10 1122322
Q ss_pred CCCC---------------------CChHHHH-HHhhhhhhhHHHHHHHHHHHHHhhhcCCCCCCCCCccchhHHhhhhc
Q psy17612 293 GTQP---------------------LSPYQQL-LEKIDTLSVRSEALQALIERKVKVRNNSANAGGENSWASKEMLASKA 350 (449)
Q Consensus 293 ~~~~---------------------~s~Yqqv-iek~d~L~~R~q~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (449)
|..- ...++.. -...+....|...+..+|.|.+++++.. .-++++
T Consensus 271 N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~AaIVRIMK~rK~l---------~h~~Lv---- 337 (382)
T 3dpl_C 271 NQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAIIQIMKMRKKI---------SNAQLQ---- 337 (382)
T ss_dssp CTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE---------CHHHHH----
T ss_pred cCCCcCCcccccceeEEEecccccccccchhhhhhHHHHHHHhhheeeEEEehhhhccCcc---------cHHHHH----
Confidence 2211 1112111 1112334569999999999999999862 222332
Q ss_pred hhhhHHHHHHhhcCCChHHHHHHHHHHhhhccc
Q psy17612 351 DLNVITIMLASKLNMGTDEAECWIVNLIRNARL 383 (449)
Q Consensus 351 ~~~~~~~~la~kLnm~~~eaE~WIvnLIr~~~l 383 (449)
+-|...|..+..-+.....+=|..||...=|
T Consensus 338 --~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl 368 (382)
T 3dpl_C 338 --TELVEILKNMFLPQKKMIKEQIEWLIEHKYI 368 (382)
T ss_dssp --HHHHHHTTTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred --HHHHHHHHhcCCCCHHHHHHHHHHHHhhhhh
Confidence 2345577778889999999999999975444
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=49.30 E-value=18 Score=28.53 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTS 48 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~ 48 (449)
....+.+..+|..+++.|+++.|..++.....+.|..
T Consensus 43 ~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 43 IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 3456778999999999999999999999998888753
No 217
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=48.74 E-value=22 Score=28.45 Aligned_cols=46 Identities=11% Similarity=0.116 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHH-HHHHHHHHHHHccccc
Q psy17612 221 NARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTD-EAECWIVNLIRNARLD 280 (449)
Q Consensus 221 naR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~-e~E~wIVnlIr~~rLd 280 (449)
..+-.|+ .|++-+...+. ..||+.||+++. .|-+-|..|=++|-+.
T Consensus 11 ~~~~~IL-~~Lk~~g~~ta-------------~eiA~~Lgit~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 11 EIKEKIC-DYLFNVSDSSA-------------LNLAKNIGLTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHH-HHHHHTCCEEH-------------HHHHHHHCGGGHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHH-HHHHHcCCcCH-------------HHHHHHcCCCcHHHHHHHHHHHHHCCCEE
Confidence 4555666 78899999999 999999999999 9999999999888776
No 218
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=48.61 E-value=2.9e+02 Score=33.36 Aligned_cols=161 Identities=17% Similarity=0.239 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHH-HhHhhcChHHHHHHHHHHHHHHhcCCCCCCChH
Q psy17612 16 ESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLA-SEILVQNWDLALEDLNKLREYIDGGSANFESPL 94 (449)
Q Consensus 16 d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla-~eIl~~dwd~a~~~l~kLke~id~~~~~~~~pl 94 (449)
..++..|..+++.|+|+.|..++... ..|.+++ +-+..++++.|.+--.|.. ++
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA-------------~ny~rLA~tLvkLge~q~AIEaarKA~-----------n~- 1250 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLGEYQAAVDGARKAN-----------ST- 1250 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh-------------hHHHHHHHHHHHhCCHHHHHHHHHHhC-----------CH-
Confidence 46778999999999999999887652 1344443 3334456766666555441 11
Q ss_pred HHHHHHHHHHHHHHHHHhc---CccchhhHHHHhcCCchhhhHHHhhhhHHHHHHHHHHHhccccccchHHHHHHHhhhc
Q psy17612 95 HLLQQRTWLIHWSLFVFFN---HVKGRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQES 171 (449)
Q Consensus 95 ~~l~qR~WliHwsLf~ffn---~~~g~~~~iD~F~~~~~yl~aIqt~cp~lLRYlvvA~Il~~~r~~~l~dlv~vi~qE~ 171 (449)
++|.- --|..+. +..|+...+..-. .|.+ .+.+.+|+ .+...++++++...+.-
T Consensus 1251 -----~aWke--v~~acve~~Ef~LA~~cgl~Iiv-~~de-------Leeli~yY--------e~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1251 -----RTWKE--VCFACVDGKEFRLAQMCGLHIVV-HADE-------LEELINYY--------QDRGYFEELITMLEAAL 1307 (1630)
T ss_pred -----HHHHH--HHHHHhhhhHHHHHHHHHHhhhc-CHHH-------HHHHHHHH--------HHcCCHHHHHHHHHHHh
Confidence 56652 1222221 1112111111000 1111 11233343 23345666666553331
Q ss_pred c---CCCchHHHHHHHHhhcccHHHHHHHHHHHhhhccccc---------------chHHhHHHHHHHHHHH
Q psy17612 172 Y---TYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDF---------------FLVACLDEFVENARLM 225 (449)
Q Consensus 172 ~---~Y~DpiT~fv~~lYv~fdf~~aq~~L~~~~~vl~~Df---------------FL~~~~d~fvenaR~~ 225 (449)
. ..-+.+|+|- -+|..|.-+.-.++++--.+.+.-+. ||-.|.++|-..+-++
T Consensus 1308 ~LeraH~gmftELa-iLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1308 GLERAHMGMFTELA-ILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred ccChhHhHHHHHHH-HHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 0 0112355555 66777777777776666665555444 6767777776665433
No 219
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=48.58 E-value=26 Score=28.85 Aligned_cols=64 Identities=11% Similarity=0.159 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHhhhhceee-EeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeC
Q psy17612 215 LDEFVENARLMIFETFCRIHQCI-SIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMG 293 (449)
Q Consensus 215 ~d~fvenaR~~ife~ycriy~~I-sI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~ 293 (449)
.+...+..+..|..--+.|-..+ +. ..||+.||||..-+.+-+..|...|-+.. ..-.|.++..
T Consensus 11 ~~~i~~~i~~~I~~g~~~~G~~lPs~-------------~~La~~~~vSr~tvr~al~~L~~~Gli~~--~~~~G~~V~~ 75 (113)
T 3tqn_A 11 YQQLRDKIVEAIIDGSYVEGEMIPSI-------------RKISTEYQINPLTVSKAYQSLLDDNVIEK--RRGLGMLVKA 75 (113)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECCH-------------HHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECT
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCEEE--ecCCeEEEeC
Confidence 45677888888888888999999 89 99999999999999999999999997743 3556777653
No 220
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=48.23 E-value=1.6e+02 Score=26.80 Aligned_cols=66 Identities=9% Similarity=0.002 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHH-HhHhhcChHHHHHHHHHH
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLA-SEILVQNWDLALEDLNKL 79 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla-~eIl~~dwd~a~~~l~kL 79 (449)
+.|+.....+.+|.++...|+++.|.+++.......|.+. +..|-.++ ++...++++.|.+...++
T Consensus 94 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 94 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP----TLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT----HHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCc----cHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4667778899999999999999999999998888665322 12444443 223345666665555544
No 221
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=46.84 E-value=52 Score=27.33 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhhhcee-eEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccce
Q psy17612 221 NARLMIFETFCRIHQC-ISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAK 282 (449)
Q Consensus 221 naR~~ife~ycriy~~-IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaK 282 (449)
..+..|+...++--.. ++. ..||+.+|++..-+-+-|-+|...|-+.-.
T Consensus 26 ~~e~~il~~L~~~~~~~~t~-------------~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDT-------------DALSKSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEH-------------HHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCCcCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 4566777777664444 999 999999999999999999999999987644
No 222
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=46.47 E-value=44 Score=30.73 Aligned_cols=38 Identities=16% Similarity=-0.017 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTS 48 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~ 48 (449)
.|+..++.+.+|..+...|+|+.|.+.+......-|+.
T Consensus 215 ~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 215 NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 56667888999999999999999999998888887754
No 223
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=44.95 E-value=28 Score=28.21 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecc
Q psy17612 220 ENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDS 285 (449)
Q Consensus 220 enaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs 285 (449)
...|..|+..+.. ..+++ ..||+.+|+++.-+-+.|-.|...|-+..+-|.
T Consensus 24 ~~~r~~IL~~L~~--~~~s~-------------~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~g 74 (108)
T 2kko_A 24 NGRRLQILDLLAQ--GERAV-------------EAIATATGMNLTTASANLQALKSGGLVEARREG 74 (108)
T ss_dssp TSTTHHHHHHHTT--CCEEH-------------HHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEET
T ss_pred CHHHHHHHHHHHc--CCcCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3456777776653 67899 999999999999999999999999988765443
No 224
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=44.22 E-value=21 Score=27.42 Aligned_cols=37 Identities=11% Similarity=-0.152 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPT 47 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~ 47 (449)
.|+..++++.+|..+...|+|+.|.+++.......+.
T Consensus 49 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 49 DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4556778999999999999999999999988877653
No 225
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=43.88 E-value=2e+02 Score=30.29 Aligned_cols=154 Identities=11% Similarity=-0.070 Sum_probs=80.9
Q ss_pred HhcCChhhHHHHHHHHH--------hcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhcCCCCCCChHHHH
Q psy17612 26 YECGNYSITTSYLYFYL--------LVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDGGSANFESPLHLL 97 (449)
Q Consensus 26 y~~GdY~~A~~~L~~~~--------~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~~~~~~~~pl~~l 97 (449)
+..|+|+.|.+.+.... ...+.. ..++..+-.+-+..++++.|.+.+.++-+.-.. ++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~--- 468 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSES----VELPLMEVRALLDLGDVAKATRKLDDLAERVGW------RWR--- 468 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTC----SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC------CHH---
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccc----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc------hHH---
Confidence 88999999999999887 333321 334444444556678999999988877654322 111
Q ss_pred HHHHHHHHHHHHHHh--cCccchhhHHHHhcCCchhhhHHHhhhhHHHHHHHHHHHhccccccchHHHHHHHhhhccCCC
Q psy17612 98 QQRTWLIHWSLFVFF--NHVKGRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYK 175 (449)
Q Consensus 98 ~qR~WliHwsLf~ff--n~~~g~~~~iD~F~~~~~yl~aIqt~cp~lLRYlvvA~Il~~~r~~~l~dlv~vi~qE~~~Y~ 175 (449)
.|.. .+.-.+- ++++|...|-.+..-.|.+ +.....+..+..-..+-.. +...-+++...+. +.
T Consensus 469 ---a~~~-lg~~~~~~g~~~~A~~~~~~al~l~P~~--------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~ 534 (681)
T 2pzi_A 469 ---LVWY-RAVAELLTGDYDSATKHFTEVLDTFPGE--------LAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VI 534 (681)
T ss_dssp ---HHHH-HHHHHHHHTCHHHHHHHHHHHHHHSTTC--------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CH
T ss_pred ---HHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCC--------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hH
Confidence 1110 1111111 2334444443333323332 2333333333333233334 5555566655542 33
Q ss_pred chHHHHHHHHhhcccHHHHHHHHHHHhhhccccc
Q psy17612 176 DPITEFLEHLYVSFDFESAREKLTECTEVLDNDF 209 (449)
Q Consensus 176 DpiT~fv~~lYv~fdf~~aq~~L~~~~~vl~~Df 209 (449)
+....+=.+++..-++++|.+.+ ++++..|+
T Consensus 535 ~a~~~lg~~~~~~g~~~~A~~~~---~~al~l~P 565 (681)
T 2pzi_A 535 SAAFGLARARSAEGDRVGAVRTL---DEVPPTSR 565 (681)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH---HTSCTTST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH---HhhcccCc
Confidence 44556666677777777766554 45555554
No 226
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=43.24 E-value=79 Score=26.06 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=31.6
Q ss_pred hhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeCCCC
Q psy17612 253 QMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQP 296 (449)
Q Consensus 253 ~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~~~~ 296 (449)
..||+++|+|+..+.+.+..|-+.|=+..+=. .+|-...++++
T Consensus 30 ~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g-~~ggy~L~~~~ 72 (129)
T 2y75_A 30 KSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG-AYGGYVLGSEP 72 (129)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHTTSEEEC-----CCEEESSCG
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCceEecCC-CCCceEeCCCH
Confidence 99999999999999999999998887654322 23445555554
No 227
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=43.11 E-value=11 Score=30.32 Aligned_cols=70 Identities=10% Similarity=0.129 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHhhhhceee-EeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeC
Q psy17612 215 LDEFVENARLMIFETFCRIHQCI-SIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMG 293 (449)
Q Consensus 215 ~d~fvenaR~~ife~ycriy~~I-sI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~ 293 (449)
.+.+.+..|..|....+.+-..+ +. ..||+.||+|..-+-+-|..|...|-+..+ .-.|..+..
T Consensus 13 ~~~l~~~i~~~I~~~~l~~g~~lps~-------------~eLa~~~~vSr~tvr~al~~L~~~Gli~~~--~g~G~~v~~ 77 (102)
T 1v4r_A 13 YADVATHFRTLIKSGELAPGDTLPSV-------------ADIRAQFGVAAKTVSRALAVLKSEGLVSSR--GALGTVVEK 77 (102)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCH-------------HHHHHHSSSCTTHHHHHTTTTTTSSCCEEE--TTTEEESCS
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCCeEEEcc
Confidence 45667778888888777888888 88 999999999999999999999888877532 334666655
Q ss_pred CCCCCh
Q psy17612 294 TQPLSP 299 (449)
Q Consensus 294 ~~~~s~ 299 (449)
.+....
T Consensus 78 ~~~~~~ 83 (102)
T 1v4r_A 78 NPIVIT 83 (102)
T ss_dssp CCCCCS
T ss_pred CCcccc
Confidence 444333
No 228
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=42.69 E-value=54 Score=25.54 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecc
Q psy17612 220 ENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDS 285 (449)
Q Consensus 220 enaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs 285 (449)
...|..|+....+ ..++. ..||+.+|+|+.-+-+-|-.|...|-+...-+.
T Consensus 22 ~~~r~~Il~~L~~--~~~~~-------------~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g 72 (98)
T 3jth_A 22 NERRLQILCMLHN--QELSV-------------GELCAKLQLSQSALSQHLAWLRRDGLVTTRKEA 72 (98)
T ss_dssp SHHHHHHHHHTTT--SCEEH-------------HHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred CHHHHHHHHHHhc--CCCCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4568888887766 78999 999999999999999999999999887665443
No 229
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=42.58 E-value=31 Score=27.95 Aligned_cols=46 Identities=20% Similarity=0.149 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccc
Q psy17612 221 NARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDA 281 (449)
Q Consensus 221 naR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLda 281 (449)
..+..|+ .+++-.. ++. ..||++||+|...+-+-|-+|-++|-+..
T Consensus 17 ~~~~~IL-~lL~~~g-~sa-------------~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 17 EIVCEAI-KTIGIEG-ATA-------------AQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp HHHHHHH-HHHSSST-EEH-------------HHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHHHH-HHHHHcC-CCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 4444555 5667544 888 99999999999999999999999887644
No 230
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=42.53 E-value=29 Score=29.26 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHhhhhceee-EeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeC
Q psy17612 215 LDEFVENARLMIFETFCRIHQCI-SIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMG 293 (449)
Q Consensus 215 ~d~fvenaR~~ife~ycriy~~I-sI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~ 293 (449)
.+...+..|..|..--+++-..+ +. ..||+.||||..-+.+-+..|...|-+.. -.-.|..+..
T Consensus 13 ~~~i~~~l~~~I~~g~~~~G~~lPse-------------~~La~~~~vSr~tvr~Al~~L~~~Gli~~--~~g~G~~V~~ 77 (126)
T 3by6_A 13 YLQLVDRIKNEVATDVLSANDQLPSV-------------RETALQEKINPNTVAKAYKELEAQKVIRT--IPGKGTFITG 77 (126)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEECCH-------------HHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECS
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCEEE--ecCCeEEEcc
Confidence 45677888888888888999999 99 99999999999999999999999997743 3456777754
No 231
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=42.29 E-value=54 Score=33.91 Aligned_cols=73 Identities=10% Similarity=0.054 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC----CCcchhh--HHHHHHHHHHhHhhcChHHHHHHHHHHHHHHh
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVM----PTSDRHY--LAVLWGKLASEILVQNWDLALEDLNKLREYID 84 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~----~~~~~k~--ls~lwgkla~eIl~~dwd~a~~~l~kLke~id 84 (449)
.|++..++..+|.+|...|+|++|..++....... .++++.. +-.+.+....|..++ ..|.....++||--.
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~--~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMF--RQNEFMYHKMREAAL 466 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 58899999999999999999999999888755443 2333332 223444444454444 466666677777654
Q ss_pred c
Q psy17612 85 G 85 (449)
Q Consensus 85 ~ 85 (449)
+
T Consensus 467 ~ 467 (490)
T 3n71_A 467 N 467 (490)
T ss_dssp T
T ss_pred c
Confidence 4
No 232
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=42.25 E-value=1.3e+02 Score=24.66 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccce
Q psy17612 215 LDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAK 282 (449)
Q Consensus 215 ~d~fvenaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaK 282 (449)
.+-+-...|+.|+....+ ...+++ ..||+.||+|+.-+-+-|-.|...|-+...
T Consensus 36 ~~al~~~~rl~IL~~L~~-~~~~s~-------------~eLa~~l~is~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQ-DEELCV-------------CDIANILGVTIANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp HHHHHSHHHHHHHHHHHH-SSCEEH-------------HHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHhCCHHHHHHHHHHHH-CCCcCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 344445568888887653 467899 999999999999999999999988877654
No 233
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=41.91 E-value=99 Score=29.09 Aligned_cols=57 Identities=11% Similarity=0.201 Sum_probs=40.8
Q ss_pred hHHhHHHHHHHHHHHHHH------Hhhhh-----ceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccc
Q psy17612 211 LVACLDEFVENARLMIFE------TFCRI-----HQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARL 279 (449)
Q Consensus 211 L~~~~d~fvenaR~~ife------~ycri-----y~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rL 279 (449)
+...+++.+.+.|-.+.+ +++.+ +.+.+. +.||+.+|+++++++.-|.+|-..|-+
T Consensus 142 v~~~~~~~~~~~~~~~le~ig~~~~~~~l~~~l~~~~~t~-------------~~la~~~~l~~~~V~~~l~~L~~~~~v 208 (232)
T 2qlz_A 142 IESYRSSLMRKIKEAYLKEIGDMTQLAILHYLLLNGRATV-------------EELSDRLNLKEREVREKISEMARFVPV 208 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHSSEEEH-------------HHHHHHHTCCHHHHHHHHHHHTTTSCE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhcCCCCH-------------HHHHHHhCcCHHHHHHHHHHHHhcCCe
Confidence 344455555555544444 33333 478888 999999999999999999999877766
Q ss_pred c
Q psy17612 280 D 280 (449)
Q Consensus 280 d 280 (449)
.
T Consensus 209 ~ 209 (232)
T 2qlz_A 209 K 209 (232)
T ss_dssp E
T ss_pred E
Confidence 4
No 234
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=41.33 E-value=12 Score=37.85 Aligned_cols=67 Identities=12% Similarity=0.152 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHH
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREY 82 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~ 82 (449)
++..++++.+|..+++.|+|++|.+++.......+.. ..++...=.+-...++++.|.+..+++-++
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 69 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIEL 69 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4556677888999999999999999999988887643 223333333445567999999988877553
No 235
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=40.41 E-value=50 Score=28.39 Aligned_cols=61 Identities=7% Similarity=-0.068 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeCCCC
Q psy17612 220 ENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQP 296 (449)
Q Consensus 220 enaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~~~~ 296 (449)
-..|.+++-.. ..-+.+++ +.||+.+|+|+..+++.+..|-+.|=+..+=. .|-....+++
T Consensus 15 yAl~~L~~La~-~~~~~~~~-------------~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG--~GGy~L~~~p 75 (149)
T 1ylf_A 15 IAVHILSILKN-NPSSLCTS-------------DYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG--PGGAGLLKDL 75 (149)
T ss_dssp HHHHHHHHHHH-SCGGGCCH-------------HHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-----CCEEESSCG
T ss_pred HHHHHHHHHHh-CCCCCcCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC--CCceEeCCCh
Confidence 35666665544 23356888 99999999999999999999999887665433 5556666665
No 236
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=39.88 E-value=1.9e+02 Score=25.26 Aligned_cols=63 Identities=11% Similarity=-0.022 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhH-h----hcChHHHHHHHHHHHH
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEI-L----VQNWDLALEDLNKLRE 81 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eI-l----~~dwd~a~~~l~kLke 81 (449)
+...++++.+|..++..|+|+.|.+++..... ++ +.. + |-.++.-. . .++++.|.+.++++-+
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~-~~~---a-~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 70 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LK-ENS---G-CFNLGVLYYQGQGVEKNLKKAASFYAKACD 70 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TT-CHH---H-HHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CC-CHH---H-HHHHHHHHHcCCCcCCCHHHHHHHHHHHHH
Confidence 34567899999999999999999999987766 32 121 1 22233222 2 5688888888777644
No 237
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=38.99 E-value=42 Score=27.47 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecc
Q psy17612 216 DEFVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDS 285 (449)
Q Consensus 216 d~fvenaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs 285 (449)
..+-...|+.|+.... ...++. ..||+.||+|+.-+-+-|-.|...|-+..+-+.
T Consensus 13 ~al~~~~R~~Il~~L~--~~~~~~-------------~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~g 67 (118)
T 3f6o_A 13 QALADPTRRAVLGRLS--RGPATV-------------SELAKPFDMALPSFMKHIHFLEDSGWIRTHKQG 67 (118)
T ss_dssp HHHTSHHHHHHHHHHH--TCCEEH-------------HHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHhCCHHHHHHHHHHH--hCCCCH-------------HHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecC
Confidence 3444567888888776 367899 999999999999999999999999988766553
No 238
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=38.87 E-value=39 Score=28.51 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhceee-EeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEe
Q psy17612 214 CLDEFVENARLMIFETFCRIHQCI-SIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIM 292 (449)
Q Consensus 214 ~~d~fvenaR~~ife~ycriy~~I-sI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m 292 (449)
-+....+..|..|..--++|-..+ +. ..||+.||||..=+-+-+..|-..|-+..+ .-.|..+.
T Consensus 15 lY~QI~~~i~~~I~~G~l~pG~~LPse-------------r~La~~~gVSr~tVReAl~~L~~eGlv~~~--~g~G~~V~ 79 (134)
T 4ham_A 15 IYEQIVQKIKEQVVKGVLQEGEKILSI-------------REFASRIGVNPNTVSKAYQELERQEVIITV--KGKGTFIA 79 (134)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECCH-------------HHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCccH-------------HHHHHHHCCCHHHHHHHHHHHHHCCcEEEE--cCcEEEEe
Confidence 456788889999999889999999 88 999999999999999999999999987543 55688776
Q ss_pred CCC
Q psy17612 293 GTQ 295 (449)
Q Consensus 293 ~~~ 295 (449)
...
T Consensus 80 ~~~ 82 (134)
T 4ham_A 80 NQT 82 (134)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 239
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=38.79 E-value=1.7e+02 Score=31.96 Aligned_cols=117 Identities=20% Similarity=0.116 Sum_probs=77.1
Q ss_pred hhhHHhhcCCCHHHHHHHHHHHHHccccccee-----c----ccCCEEEeCCCCC---------ChH--HHHHHh----h
Q psy17612 252 GQMLASKLNMGTDEAECWIVNLIRNARLDAKI-----D----SKLGHVIMGTQPL---------SPY--QQLLEK----I 307 (449)
Q Consensus 252 ~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKI-----D----s~~G~V~m~~~~~---------s~Y--qqviek----~ 307 (449)
-+.|++.+||+++++.+-|..|+..+-|..+= + ..++.+..|..-. .+. .+.-|. -
T Consensus 606 ~~ei~~~t~i~~~~l~r~L~~l~k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e~~~~~~ 685 (760)
T 1ldj_A 606 VQQLTDSTQIKMDILAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHK 685 (760)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHTTTEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCCcceeCCCccccccCCCCCCCEEEeeccccCCceEEEecCccccccchhhhhHHH
Confidence 38899999999999999999998776554221 0 1234555553310 111 111111 1
Q ss_pred hhhhhHHHHHHHHHHHHHhhhcCCCCCCCCCccchhHHhhhhchhhhHHHHHHhhcCCChHHHHHHHHHHhhhccc
Q psy17612 308 DTLSVRSEALQALIERKVKVRNNSANAGGENSWASKEMLASKADLNVITIMLASKLNMGTDEAECWIVNLIRNARL 383 (449)
Q Consensus 308 d~L~~R~q~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~kLnm~~~eaE~WIvnLIr~~~l 383 (449)
+.-..|...+..+|.|.+++++.. .-+++. +-|..+|..+..-++.+..+=|..||...=|
T Consensus 686 ~v~~dR~~~i~AaIVRIMK~rK~l---------~h~~Lv------~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl 746 (760)
T 1ldj_A 686 NIEEDRKLLIQAAIVRIMKMRKVL---------KHQQLL------GEVLTQLSSRFKPRVPVIKKCIDILIEKEYL 746 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSEE---------EHHHHH------HHHHHHHTTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHhHheeeehhhhhccCCC---------cHHHHH------HHHHHHHhccCCCCHHHHHHHHHHHhhccce
Confidence 344678889999999999999861 112222 3455677778889999999999999976555
No 240
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=38.51 E-value=40 Score=27.01 Aligned_cols=38 Identities=8% Similarity=0.151 Sum_probs=32.1
Q ss_pred hhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHccccc
Q psy17612 230 FCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLD 280 (449)
Q Consensus 230 ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLd 280 (449)
.+.+-...+. ..+|.+||++.-++-+-|-+|-+.|.+.
T Consensus 23 ~L~~~~~~Ta-------------~~IAkkLg~sK~~vNr~LY~L~kkG~V~ 60 (75)
T 1sfu_A 23 SLNTNDYTTA-------------ISLSNRLKINKKKINQQLYKLQKEDTVK 60 (75)
T ss_dssp TSCTTCEECH-------------HHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred hCCCCcchHH-------------HHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 5556666777 9999999999999999999998877664
No 241
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=37.79 E-value=29 Score=28.47 Aligned_cols=57 Identities=12% Similarity=0.053 Sum_probs=44.4
Q ss_pred HHHHHHHHhhhhceee-EeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEe
Q psy17612 222 ARLMIFETFCRIHQCI-SIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIM 292 (449)
Q Consensus 222 aR~~ife~ycriy~~I-sI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m 292 (449)
.|..|+ ..+++-..+ +. ..||+.||||..-+-+-|..|...|-+...=....|..+.
T Consensus 29 i~~~I~-~~l~~g~~lps~-------------~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~ 86 (102)
T 2b0l_A 29 AIEHIF-EELDGNEGLLVA-------------SKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIK 86 (102)
T ss_dssp HHHHHT-TSSBTTEEEECH-------------HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEE
T ss_pred HHHHHH-hhhcCCCcCCCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEe
Confidence 466777 667888887 89 9999999999999999999999999775432114566664
No 242
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=37.78 E-value=1.5e+02 Score=29.76 Aligned_cols=38 Identities=16% Similarity=0.056 Sum_probs=32.9
Q ss_pred hhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHccccc
Q psy17612 230 FCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLD 280 (449)
Q Consensus 230 ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLd 280 (449)
++.-++.+++ +.+++.+|+|..-+.+.|-.|...|-|.
T Consensus 305 ~l~~~p~~t~-------------~~~~~~~~~S~~TA~r~L~~L~e~GiL~ 342 (373)
T 3eqx_A 305 VIFEQPYCRI-------------QNLVESGLAKRQTASVYLKQLCDIGVLE 342 (373)
T ss_dssp HHHHCSEEEH-------------HHHHHTSSSCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHCCCccH-------------HHHHHHhCcCHHHHHHHHHHHHHCCcEE
Confidence 3344667888 9999999999999999999999999885
No 243
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=37.77 E-value=41 Score=26.75 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=30.6
Q ss_pred HHHhhcCCChHHHHHHHHHHhhhcccccccccCCCeEEecCCCCChhH
Q psy17612 358 MLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPYQ 405 (449)
Q Consensus 358 ~la~kLnm~~~eaE~WIvnLIr~~~ldAKIDs~~~~v~m~~~~~svyq 405 (449)
.||++||++.-...+.|-.|-+.+.+. +++...|.-.+..+ ..+|.
T Consensus 32 eLA~~Lgvsr~tV~~~L~~Le~~G~I~-~~g~~~~~W~i~~~-~~~~~ 77 (81)
T 1qbj_A 32 DLSGKLGTPKKEINRVLYSLAKKGKLQ-KEAGTPPLWKIAVS-TQAWN 77 (81)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEE-EESSSSCEEEEC--------
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEE-ecCCCCCeeEEeCc-HHhcc
Confidence 779999999999999999998888874 34545555444433 34443
No 244
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=36.98 E-value=78 Score=28.16 Aligned_cols=74 Identities=9% Similarity=0.057 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcCChh----------hHHHHHHHHHhcCCCcchh---hHHHHHHHHHHhHhhcChHHHHHH
Q psy17612 9 QFKMDMMESMYKLAKFRYECGNYS----------ITTSYLYFYLLVMPTSDRH---YLAVLWGKLASEILVQNWDLALED 75 (449)
Q Consensus 9 ~~~~e~~d~lyk~Akf~y~~GdY~----------~A~~~L~~~~~l~~~~~~k---~ls~lwgkla~eIl~~dwd~a~~~ 75 (449)
.+.|+-.++++.+|..+.+.|.++ .|.+.+.....+-|....- .+.++- ..+.+.-+|..+..+
T Consensus 30 ~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~---~lg~l~P~~~~a~g~ 106 (158)
T 1zu2_A 30 KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT---SFAFLTPDETEAKHN 106 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HHHHHCCCHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH---HhcccCcchhhhhcc
Confidence 356777889999999999998865 8888888888887743221 111111 112235577777777
Q ss_pred HHHHHHHHhc
Q psy17612 76 LNKLREYIDG 85 (449)
Q Consensus 76 l~kLke~id~ 85 (449)
..++.+.+++
T Consensus 107 ~~eA~~~~~k 116 (158)
T 1zu2_A 107 FDLATQFFQQ 116 (158)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777776
No 245
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=36.33 E-value=24 Score=31.84 Aligned_cols=45 Identities=11% Similarity=0.150 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhce--eeEeeccccccccccchhhHHhhcCCCHHHHHHHHH
Q psy17612 214 CLDEFVENARLMIFETFCRIHQ--CISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIV 271 (449)
Q Consensus 214 ~~d~fvenaR~~ife~ycriy~--~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIV 271 (449)
+..+|-+.|+.++-..++-||. .+++ ..+|+.||||..-+=+|.-
T Consensus 24 yt~EfK~aAv~l~~~~~~~p~~~~~lTv-------------~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 24 LTAKQIQAAYLLVENELMESNNEEKRTQ-------------DEMANELGINRTTLWEWRT 70 (155)
T ss_dssp SCHHHHHHHHHHHHHHHCC---CCCCCH-------------HHHHHHHTCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHccccccccccCCCH-------------HHHHHHhCCCHHHHHHHHH
Confidence 5678889999999999987777 5999 9999999999999999976
No 246
>1iie_A Protein (HLA-DR antigens associated invariant chain); major histocompatibility complex, antigen processing, oligomerization, chaperonin; NMR {Homo sapiens} SCOP: a.109.1.1
Probab=36.14 E-value=42 Score=27.01 Aligned_cols=37 Identities=24% Similarity=0.524 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHhcCc
Q psy17612 71 LALEDLNKLREYIDGGSANFESPLHLLQQRTWLIHWSLFVFFNHV 115 (449)
Q Consensus 71 ~a~~~l~kLke~id~~~~~~~~pl~~l~qR~WliHwsLf~ffn~~ 115 (449)
+-+++++.||..++. .....--+|+-||.||-+...+
T Consensus 28 sfl~NLk~LK~~m~~--------~dWk~FEsWM~~WLLFeMaq~~ 64 (75)
T 1iie_A 28 SFPENLRHLKNTMET--------IDWKVFESWMHHWLLFEMSRHS 64 (75)
T ss_dssp CHHHHHHHHHHHSCH--------HHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhcCh--------hhHHhHHHHHHHHHHHHHHhCC
Confidence 456778888887776 2234556999999999998644
No 247
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=36.13 E-value=37 Score=26.62 Aligned_cols=57 Identities=9% Similarity=0.083 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeCC
Q psy17612 218 FVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGT 294 (449)
Q Consensus 218 fvenaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~~ 294 (449)
+-...|..|+..+ ...+++ ..||+.||+|+.-+-+-|-.|...|-+...- |....+.
T Consensus 28 l~~~~r~~Il~~L---~~~~~~-------------~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~----g~y~l~~ 84 (96)
T 1y0u_A 28 VTNPVRRKILRML---DKGRSE-------------EEIMQTLSLSKKQLDYHLKVLEAGFCIERVG----ERWVVTD 84 (96)
T ss_dssp HSCHHHHHHHHHH---HTTCCH-------------HHHHHHHTCCHHHHHHHHHHHHHTTSEEEET----TEEEECT
T ss_pred hCCHHHHHHHHHH---cCCCCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC----CEEEECC
Confidence 3455677777766 456888 9999999999999999999999999876432 5555544
No 248
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=35.92 E-value=31 Score=28.81 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=27.0
Q ss_pred hhHHhhcCCCHHHHHHHHHHHHHcccccc
Q psy17612 253 QMLASKLNMGTDEAECWIVNLIRNARLDA 281 (449)
Q Consensus 253 ~~LA~~Lnms~~e~E~wIVnlIr~~rLda 281 (449)
..+|+.||+++.++..|+-.+.+.|.+-.
T Consensus 24 ~~la~~~~~~~~~~~~~l~~l~~~G~l~~ 52 (121)
T 2pjp_A 24 RDLAKETGTDEQAMRLTLRQAAQQGIITA 52 (121)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 89999999999999999999999998754
No 249
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=34.75 E-value=55 Score=26.12 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceec
Q psy17612 220 ENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKID 284 (449)
Q Consensus 220 enaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKID 284 (449)
...|..|+..+. ...+++ ..||+.+|+|+.-+-+-|-.|...|-+..+-+
T Consensus 25 ~~~r~~IL~~L~--~~~~~~-------------~ela~~l~is~stvs~~L~~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 25 DYNRIRIMELLS--VSEASV-------------GHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ 74 (106)
T ss_dssp SHHHHHHHHHHH--HCCBCH-------------HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHH--hCCCCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 456777877665 566889 99999999999999999999998887765443
No 250
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=34.52 E-value=60 Score=27.73 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=39.6
Q ss_pred hhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeCCCCC--ChHHHHHHhhh
Q psy17612 253 QMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPL--SPYQQLLEKID 308 (449)
Q Consensus 253 ~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~~~~~--s~Yqqviek~d 308 (449)
+.||+++|+|+..+++.+..|-+.|=+...=. .|-....+++. ++ -.|++..+
T Consensus 27 ~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG--~GGy~Lar~p~~Itl-~dVi~ave 81 (145)
T 1xd7_A 27 EIIADSVNTNPVVVRRMISLLKKADILTSRAG--VPGASLKKDPADISL-LEVYRAVQ 81 (145)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS--SSSCEESSCGGGCBH-HHHHHHHC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCceEeecC--CCCceecCCHHHCCH-HHHHHHHc
Confidence 99999999999999999999999998766544 44456666653 33 34555544
No 251
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=34.19 E-value=41 Score=28.16 Aligned_cols=64 Identities=11% Similarity=0.141 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHhhhhceee-EeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeC
Q psy17612 215 LDEFVENARLMIFETFCRIHQCI-SIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMG 293 (449)
Q Consensus 215 ~d~fvenaR~~ife~ycriy~~I-sI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~ 293 (449)
.+...+..|..|..--++|-..+ +. ..||+.||||..-+-+-+..|...|-+.. -.-.|.++..
T Consensus 15 ~~~i~~~i~~~I~~g~~~~g~~Lps~-------------~~La~~~~vSr~tvr~Al~~L~~~G~i~~--~~g~G~~V~~ 79 (125)
T 3neu_A 15 YSQISDWMKKQMITGEWKGEDKLPSV-------------REMGVKLAVNPNTVSRAYQELERAGYIYA--KRGMGSFVTS 79 (125)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCBCCCH-------------HHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCeEEE--ecCCEEEEec
Confidence 45677888888888788888888 58 99999999999999999999999997744 3445777754
No 252
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=33.43 E-value=54 Score=27.59 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=40.4
Q ss_pred HHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHccccc---ceeccc
Q psy17612 222 ARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLD---AKIDSK 286 (449)
Q Consensus 222 aR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLd---aKIDs~ 286 (449)
.+..++. .++-..+++. ..||+++|+|+.-+-+-|-+|...|-+. +.+|..
T Consensus 4 ~~~~il~-~L~~~~~~~~-------------~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 4 IDLRILK-ILQYNAKYSL-------------DEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp HHHHHHH-HHTTCTTSCH-------------HHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHH-HHHHcCCCCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 3455555 3455667888 9999999999999999999999999775 467754
No 253
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=33.33 E-value=3.1e+02 Score=25.83 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=49.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCC-----cchhhHHHHHHHHHHh-HhhcChHHHHHHHHHHHHHHhcC
Q psy17612 20 KLAKFRYECGNYSITTSYLYFYLLVMPT-----SDRHYLAVLWGKLASE-ILVQNWDLALEDLNKLREYIDGG 86 (449)
Q Consensus 20 k~Akf~y~~GdY~~A~~~L~~~~~l~~~-----~~~k~ls~lwgkla~e-Il~~dwd~a~~~l~kLke~id~~ 86 (449)
-+|.+++..|+|+.|.+++.....+.+. .+.. ....|+-++.- ..+++++.|.+.+.++.++...-
T Consensus 56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~-~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR-SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT-THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 4899999999999999999887766431 1233 44567776643 34579999999999998887763
No 254
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=33.07 E-value=61 Score=25.20 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=28.6
Q ss_pred HHHhhcCCChHHHHHHHHHHhhhcccccccccCCCeEEe
Q psy17612 358 MLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIM 396 (449)
Q Consensus 358 ~la~kLnm~~~eaE~WIvnLIr~~~ldAKIDs~~~~v~m 396 (449)
.||++||++.-...+.|-+|.+.+.+. ++.+..|.=.+
T Consensus 36 eLA~~Lgvs~~tV~~~L~~L~~~G~I~-~~g~~~~~W~i 73 (77)
T 1qgp_A 36 DLSGKLGTPKKEINRVLYSLAKKGKLQ-KEAGTPPLWKI 73 (77)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHTSEE-EECSSSCEEEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEE-ecCCCCCceEe
Confidence 789999999999999999998877774 23333444333
No 255
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=32.83 E-value=38 Score=30.94 Aligned_cols=41 Identities=10% Similarity=0.010 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHH
Q psy17612 220 ENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNL 273 (449)
Q Consensus 220 enaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnl 273 (449)
.+-|......+++-++.|++ +.||+.||+|++-+.+.|..|
T Consensus 10 k~eR~~~i~~~l~~~~~~~~-------------~~la~~~~vs~~TiRrDl~eL 50 (190)
T 4a0z_A 10 KDKRREAIRQQIDSNPFITD-------------HELSDLFQVSIQTIRLDRTYL 50 (190)
T ss_dssp HHHHHHHHHHHHHHCTTCCH-------------HHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEeH-------------HHHHHHHCCCHHHHHHHHHHh
Confidence 56788888899999999999 999999999999999998877
No 256
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=32.69 E-value=61 Score=25.22 Aligned_cols=62 Identities=13% Similarity=0.020 Sum_probs=43.1
Q ss_pred hhH----HhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeCCCCCChHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy17612 253 QML----ASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLSPYQQLLEKIDTLSVRSEALQALIERKV 325 (449)
Q Consensus 253 ~~L----A~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~~~~~s~Yqqviek~d~L~~R~q~L~~~i~~~~ 325 (449)
..| |+.+|+++.-+-+.|-+|...|=+.-.-|.....+ .+-++|+.+..+.......+...+
T Consensus 26 ~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~-----------~LT~~G~~~~~~~~~~~~~~~~~~ 91 (99)
T 1tbx_A 26 YDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRL-----------YLTEKGKLFAISLKTAIETYKQIK 91 (99)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEE-----------EECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEE-----------EECHHHHHHHHHHHHHHHHHHHHH
Confidence 888 99999999999999999999887766555522222 233466666666666555555443
No 257
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=31.34 E-value=58 Score=26.70 Aligned_cols=33 Identities=6% Similarity=0.010 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLV 44 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l 44 (449)
.+|..+.++=|++|++.||+..|...+..-..+
T Consensus 36 l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~Gw 68 (87)
T 2pmr_A 36 VERALNYRDDSVYYLEKGDHITSFGCITYAHGL 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 367788899999999999999999888665444
No 258
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.43 E-value=44 Score=26.63 Aligned_cols=20 Identities=5% Similarity=0.212 Sum_probs=18.8
Q ss_pred HHHhhcCCChHHHHHHHHHH
Q psy17612 358 MLASKLNMGTDEAECWIVNL 377 (449)
Q Consensus 358 ~la~kLnm~~~eaE~WIvnL 377 (449)
.||+++||+.+-...|..|-
T Consensus 37 ~LA~~lgL~~~VVrVWFqNr 56 (71)
T 2da7_A 37 KISIAVGLPQEFVKEWFEQR 56 (71)
T ss_dssp HHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHhhc
Confidence 78999999999999999993
No 259
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=30.34 E-value=52 Score=26.52 Aligned_cols=46 Identities=17% Similarity=0.171 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccc
Q psy17612 221 NARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDA 281 (449)
Q Consensus 221 naR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLda 281 (449)
..|+.++....+ ...++ ..+|+.||+++.-+-+-|-.|...|-+.-
T Consensus 32 ~~~~~il~~L~~--~~~s~-------------~ela~~l~is~stvsr~l~~Le~~Glv~~ 77 (119)
T 2lkp_A 32 PSRLMILTQLRN--GPLPV-------------TDLAEAIGMEQSAVSHQLRVLRNLGLVVG 77 (119)
T ss_dssp HHHHHHHHHHHH--CCCCH-------------HHHHHHHSSCHHHHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHH--CCCCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 567778877766 57899 99999999999999999999988776643
No 260
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=30.02 E-value=77 Score=25.79 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecc
Q psy17612 221 NARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDS 285 (449)
Q Consensus 221 naR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs 285 (449)
.....++....+.+..+++ ..||+.+|+++.-+-+.|-+|...|-+.-.-|.
T Consensus 35 ~~~~~iL~~l~~~~~~~~~-------------~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~ 86 (147)
T 2hr3_A 35 FSQLVVLGAIDRLGGDVTP-------------SELAAAERMRSSNLAALLRELERGGLIVRHADP 86 (147)
T ss_dssp HHHHHHHHHHHHTTSCBCH-------------HHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred HHHHHHHHHHHHcCCCCCH-------------HHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCC
Confidence 3344455444444678999 999999999999999999999999877655444
No 261
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=29.82 E-value=64 Score=26.43 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q psy17612 12 MDMMESMYKLAKFRYECGNYSITTSYLYFYLLVM 45 (449)
Q Consensus 12 ~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~ 45 (449)
.++..+.++=|++|++.||+..|...+..-..+.
T Consensus 32 l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~GwL 65 (86)
T 2oo2_A 32 MRNIEAYISDSRYFLEKGDLVRAFECVVWAWAWL 65 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3678889999999999999999998886655443
No 262
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=29.13 E-value=48 Score=33.70 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q psy17612 11 KMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVM 45 (449)
Q Consensus 11 ~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~ 45 (449)
.|++...+.++|.+|...|+|++|..++.......
T Consensus 378 Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 378 SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999988755543
No 263
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=28.96 E-value=61 Score=28.61 Aligned_cols=64 Identities=13% Similarity=0.125 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEeCCCC
Q psy17612 218 FVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQP 296 (449)
Q Consensus 218 fvenaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m~~~~ 296 (449)
|--..|.+++-..- +-..+++ +.||+.+|+|+..+++.+..|-+.|=+..+= -..|=....+++
T Consensus 11 ~~yAlr~l~~La~~-~~~~~s~-------------~~IA~~~~is~~~l~kil~~L~~aGlv~s~r-G~~GGy~Lar~p 74 (162)
T 3k69_A 11 FSVAVHSILYLDAH-RDSKVAS-------------RELAQSLHLNPVMIRNILSVLHKHGYLTGTV-GKNGGYQLDLAL 74 (162)
T ss_dssp HHHHHHHHHHHHTT-TTSCBCH-------------HHHHHHHTSCGGGTHHHHHHHHHTTSSEEEC-STTCEEECCSCG
T ss_pred HHHHHHHHHHHHhC-CCCCcCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCEEeec-CCCCCeEecCCh
Confidence 34456777666543 2356888 9999999999999999999999988765432 223445666665
No 264
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=28.53 E-value=24 Score=29.84 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=28.2
Q ss_pred hhHHhhcCCCHHHHHHHHHHHHHcccccceecc
Q psy17612 253 QMLASKLNMGTDEAECWIVNLIRNARLDAKIDS 285 (449)
Q Consensus 253 ~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs 285 (449)
..||+++|+|+..+-+.|-+|+..|=|.=+-|.
T Consensus 55 ~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~ 87 (128)
T 2vn2_A 55 AELAERMTVSAAECMEMVRRLLQKGMIAIEEHT 87 (128)
T ss_dssp HHHHHTSSSCHHHHHHHHHHHHHTTSSEECC--
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEE
Confidence 999999999999999999999999977554443
No 265
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=28.38 E-value=57 Score=27.62 Aligned_cols=63 Identities=16% Similarity=0.119 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhhhhceee-EeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEe
Q psy17612 215 LDEFVENARLMIFETFCRIHQCI-SIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIM 292 (449)
Q Consensus 215 ~d~fvenaR~~ife~ycriy~~I-sI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m 292 (449)
.+...+..|..|..--++|=..+ +. ..||+.||||..-+-+-+..|...|-+.. -.-.|..+.
T Consensus 6 ~~~i~~~i~~~I~~g~l~~G~~LPse-------------~~La~~~gvSr~tVr~Al~~L~~~Gli~~--~~g~G~~V~ 69 (129)
T 2ek5_A 6 YKQIASLIEDSIVDGTLSIDQRVPST-------------NELAAFHRINPATARNGLTLLVEAGILYK--KRGIGMFVS 69 (129)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSCBCCH-------------HHHHHHTTCCHHHHHHHHHHHHTTTSEEE--ETTTEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCcEEE--ecCCEEEEe
Confidence 35566777788887777888888 88 99999999999999999999998887643 345577664
No 266
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=28.23 E-value=1.1e+02 Score=21.78 Aligned_cols=39 Identities=10% Similarity=0.040 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhc-----CCCHHHHHHHHHH
Q psy17612 221 NARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKL-----NMGTDEAECWIVN 272 (449)
Q Consensus 221 naR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~L-----nms~~e~E~wIVn 272 (449)
..|..++..+++.+..++. +.|++.| ++|..=+-+.|-.
T Consensus 4 ~~R~~~i~~ll~~~~~~t~-------------~el~~~l~~~~~~vs~~Tv~R~L~~ 47 (64)
T 2p5k_A 4 GQRHIKIREIITSNEIETQ-------------DELVDMLKQDGYKVTQATVSRDIKE 47 (64)
T ss_dssp HHHHHHHHHHHHHSCCCSH-------------HHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCH-------------HHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 4678888888888889999 9999999 9999988888873
No 267
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=27.88 E-value=1.4e+02 Score=27.18 Aligned_cols=63 Identities=11% Similarity=0.016 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC---Ccc------------------hhhHHHHHHHHHHhHhhcChHHHH
Q psy17612 15 MESMYKLAKFRYECGNYSITTSYLYFYLLVMP---TSD------------------RHYLAVLWGKLASEILVQNWDLAL 73 (449)
Q Consensus 15 ~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~---~~~------------------~k~ls~lwgkla~eIl~~dwd~a~ 73 (449)
.+.++=+|..+|..|+|.+|..+++....... ... ..-.++-+-.-.|-+-.++++.|+
T Consensus 63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai 142 (167)
T 3ffl_A 63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI 142 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence 45788999999999999999999998533221 000 000134455666777778888887
Q ss_pred HHHH
Q psy17612 74 EDLN 77 (449)
Q Consensus 74 ~~l~ 77 (449)
..|.
T Consensus 143 ~~Le 146 (167)
T 3ffl_A 143 AILD 146 (167)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 268
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=27.58 E-value=1.5e+02 Score=29.02 Aligned_cols=63 Identities=16% Similarity=0.055 Sum_probs=43.8
Q ss_pred HHHHHHHHH--HHhcC--ChhhHHHHHHHHHhcCCCcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHH
Q psy17612 16 ESMYKLAKF--RYECG--NYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYI 83 (449)
Q Consensus 16 d~lyk~Akf--~y~~G--dY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~i 83 (449)
..++.++.. ..-.| +|..|..++..+....++ .+....+|. |.+.+++|+.|.+.++++.+.+
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~--~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFPT--WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS--HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC--cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhc
Confidence 445666655 44345 899998888776555542 122346666 8999999999999998776654
No 269
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=27.41 E-value=91 Score=25.23 Aligned_cols=48 Identities=8% Similarity=0.058 Sum_probs=38.1
Q ss_pred HHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecc
Q psy17612 223 RLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDS 285 (449)
Q Consensus 223 R~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs 285 (449)
...++.... +..++. ..||+.+|+++.-+-+.|-+|...|-+.-.-|.
T Consensus 39 ~~~iL~~l~--~~~~~~-------------~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~ 86 (146)
T 2gxg_A 39 DFLVLRATS--DGPKTM-------------AYLANRYFVTQSAITASVDKLEEMGLVVRVRDR 86 (146)
T ss_dssp HHHHHHHHT--TSCBCH-------------HHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHh--cCCcCH-------------HHHHHHhCCCchhHHHHHHHHHHCCCEEeecCC
Confidence 334444443 788999 999999999999999999999999877655544
No 270
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=26.49 E-value=58 Score=32.88 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVM 45 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~ 45 (449)
-.|++...++++|.+|...|+|++|.+++.......
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999888755443
No 271
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=26.31 E-value=2e+02 Score=25.15 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC---Ccch-------hhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHh
Q psy17612 15 MESMYKLAKFRYECGNYSITTSYLYFYLLVMP---TSDR-------HYLAVLWGKLASEILVQNWDLALEDLNKLREYID 84 (449)
Q Consensus 15 ~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~---~~~~-------k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id 84 (449)
.+.+++-|..|.+.||++.|.-++-.|..++. +.++ ..-..+.+++. +.+.+.+++||..|+
T Consensus 40 a~~llr~A~~y~~egd~e~AYily~R~~~L~~e~IpkHpdy~~~~~~~~~~~l~~l~--------~~~~~~lE~LK~~L~ 111 (146)
T 2xze_A 40 GVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLK--------EIAFPKAEELKAELL 111 (146)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGGGSTTTTTCCCTTHHHHHHHHH--------HTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcccCccchhhhhHHHHHHHHHHH--------HHhHHHHHHHHHHHH
Confidence 38899999999999999999988777655552 1111 11233444444 245677777777777
Q ss_pred c
Q psy17612 85 G 85 (449)
Q Consensus 85 ~ 85 (449)
+
T Consensus 112 ~ 112 (146)
T 2xze_A 112 K 112 (146)
T ss_dssp H
T ss_pred H
Confidence 5
No 272
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=25.83 E-value=1.5e+02 Score=26.20 Aligned_cols=70 Identities=14% Similarity=0.040 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC--CcchhhHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHhc
Q psy17612 15 MESMYKLAKFRYECGNYSITTSYLYFYLLVMP--TSDRHYLAVLWGKLASEILVQNWDLALEDLNKLREYIDG 85 (449)
Q Consensus 15 ~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~--~~~~k~ls~lwgkla~eIl~~dwd~a~~~l~kLke~id~ 85 (449)
.+.|++-|..|.+.||.+.|.-++-.|..+.. ..++-+-+.. ..+..-+.......+.+.+++||..++.
T Consensus 42 a~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kIpkHpdyk~~~-~~~k~~l~k~~~~~vl~~lE~LK~~L~~ 113 (144)
T 2a9u_A 42 ALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLIKKRPDFKQQQ-DYFHSILGPGNIKKAVEEAERLSESLKL 113 (144)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSHHHHHTH-HHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCcchhhhh-HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999987777655542 1111111111 1111111123345678888888888876
No 273
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=25.77 E-value=75 Score=26.70 Aligned_cols=35 Identities=17% Similarity=0.126 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc
Q psy17612 14 MMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTS 48 (449)
Q Consensus 14 ~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~ 48 (449)
.+..+..-||=+|+.|||+.|+-.+.....++.+.
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~ 86 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNLSDNE 86 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHccccCH
Confidence 35678889999999999999999999888887643
No 274
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.32 E-value=3.6e+02 Score=24.13 Aligned_cols=75 Identities=9% Similarity=0.086 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHH---HhHh---hcChHHHHHHHHHHHHHH
Q psy17612 10 FKMDMMESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLA---SEIL---VQNWDLALEDLNKLREYI 83 (449)
Q Consensus 10 ~~~e~~d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla---~eIl---~~dwd~a~~~l~kLke~i 83 (449)
.+...++.-+.-|..+|+.|+|=.|-+.|..+=..+++.+.. -..+-|.+- ..+. .+||..|..-+.+....+
T Consensus 27 ~e~~~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~e-r~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L 105 (161)
T 2ijq_A 27 WEHETLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTE-SKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYF 105 (161)
T ss_dssp ESCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred ccCCCccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 445566677888888999999999999999887776543111 123344443 3332 479999999999998888
Q ss_pred hc
Q psy17612 84 DG 85 (449)
Q Consensus 84 d~ 85 (449)
..
T Consensus 106 ~~ 107 (161)
T 2ijq_A 106 RG 107 (161)
T ss_dssp TT
T ss_pred Hh
Confidence 76
No 275
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=25.30 E-value=1.6e+02 Score=23.96 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=35.2
Q ss_pred eeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccC
Q psy17612 235 QCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKL 287 (449)
Q Consensus 235 ~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~ 287 (449)
..++. ..||+.+|+++.-+=+.|-+|...|=+.-+-|...
T Consensus 52 ~~~t~-------------~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D 91 (127)
T 2frh_A 52 KEYYL-------------KDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHD 91 (127)
T ss_dssp SEEEH-------------HHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSS
T ss_pred CCcCH-------------HHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCC
Confidence 78999 99999999999999999999999998876555544
No 276
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=24.49 E-value=1.1e+02 Score=24.79 Aligned_cols=53 Identities=11% Similarity=0.033 Sum_probs=40.5
Q ss_pred HHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCE
Q psy17612 223 RLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGH 289 (449)
Q Consensus 223 R~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~ 289 (449)
...++....+ +..++. ..||+.+|+++.-+-+.|-+|...|-+.-.-|...+.
T Consensus 35 ~~~iL~~l~~-~~~~~~-------------~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r 87 (145)
T 2a61_A 35 QFDILQKIYF-EGPKRP-------------GELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRR 87 (145)
T ss_dssp HHHHHHHHHH-HCCBCH-------------HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHHHHH-cCCCCH-------------HHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCc
Confidence 3334443333 677899 9999999999999999999999999887766654443
No 277
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=24.28 E-value=74 Score=26.89 Aligned_cols=48 Identities=10% Similarity=0.122 Sum_probs=38.5
Q ss_pred HHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHccccc---ceeccc
Q psy17612 225 MIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLD---AKIDSK 286 (449)
Q Consensus 225 ~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLd---aKIDs~ 286 (449)
.++. .++-..+++. ..||+++|+|+.-+-+.|-+|...|-+. |.+|..
T Consensus 12 ~il~-~L~~~~~~s~-------------~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 12 GILE-ALMGNARTAY-------------AELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HHHH-HHHHCTTSCH-------------HHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTT
T ss_pred HHHH-HHHHcCCCCH-------------HHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHH
Confidence 3443 3444577899 9999999999999999999999999764 567765
No 278
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=23.99 E-value=1.9e+02 Score=23.22 Aligned_cols=41 Identities=10% Similarity=0.010 Sum_probs=35.4
Q ss_pred hhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecc
Q psy17612 232 RIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDS 285 (449)
Q Consensus 232 riy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs 285 (449)
..+..++. ..||+.+|+++.-+-+.|-+|...|=+.-.-|.
T Consensus 48 ~~~~~~t~-------------~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~ 88 (146)
T 2fbh_A 48 RHRDSPTQ-------------RELAQSVGVEGPTLARLLDGLESQGLVRRLAVA 88 (146)
T ss_dssp HCSSCCBH-------------HHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCB
T ss_pred HcCCCCCH-------------HHHHHHhCCChhhHHHHHHHHHHCCCeeecCCC
Confidence 45678899 999999999999999999999999977665544
No 279
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=23.96 E-value=3.5e+02 Score=25.24 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccc
Q psy17612 220 ENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDA 281 (449)
Q Consensus 220 enaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLda 281 (449)
...|..|+..... ..++. ..||+.+|+|+.-+-+-|-.|...|-+..
T Consensus 11 ~~~R~~IL~~L~~--g~~s~-------------~ELa~~lglS~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 11 NKVRRDLLSHLTC--MECYF-------------SLLSSKVSVSSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp SHHHHHHHHHHTT--TTTCS-------------SSSCTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHh--CCCCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4567788876653 56788 89999999999999999999999998876
No 280
>1nxh_A MTH396 protein; hypothetical protein, disulfide bonds, homodimer, structural genomics, PSI, protein structure initiative; 2.80A {Methanothermobacterthermautotrophicus} SCOP: a.200.1.1
Probab=23.53 E-value=18 Score=31.70 Aligned_cols=42 Identities=17% Similarity=0.320 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHH
Q psy17612 216 DEFVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVN 272 (449)
Q Consensus 216 d~fvenaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVn 272 (449)
++.++++...|++.| +.|..+.+ -+|++||+|+++++..+++
T Consensus 4 ~e~~~~MK~ril~S~-~w~edvii--------------PlSk~lgis~ee~~~I~~~ 45 (126)
T 1nxh_A 4 GELMRLMKRRILESY-RWQEDVVK--------------PLSRELEIDVEEFQDILMD 45 (126)
T ss_dssp THHHHHHHHHHHTSH-HHHHHTTT--------------TTTTTGGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc-hHHHHHHH--------------HHHHHhCcCHHHHHHHHHH
Confidence 356788888888888 77777766 5899999999999999887
No 281
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=23.43 E-value=72 Score=20.65 Aligned_cols=21 Identities=5% Similarity=0.167 Sum_probs=18.8
Q ss_pred hhHHhhcCCCHHHHHHHHHHH
Q psy17612 253 QMLASKLNMGTDEAECWIVNL 273 (449)
Q Consensus 253 ~~LA~~Lnms~~e~E~wIVnl 273 (449)
..+|+.||+|+.-+.+|+-++
T Consensus 25 ~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 25 HEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHCcCHHHHHHHHhhH
Confidence 999999999999999998653
No 282
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=23.32 E-value=83 Score=27.18 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=37.0
Q ss_pred hhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccc---cceeccc
Q psy17612 230 FCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARL---DAKIDSK 286 (449)
Q Consensus 230 ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rL---daKIDs~ 286 (449)
.++-..+++. ..||+++|+|+..+-+-|-+|...|-+ .|.+|..
T Consensus 11 ~L~~~~~~s~-------------~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 11 ILQEDSTLAV-------------ADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HHTTCSCSCH-------------HHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTT
T ss_pred HHHHCCCCCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHH
Confidence 3455677888 999999999999999999999999965 4778764
No 283
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=23.27 E-value=1.1e+02 Score=24.56 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=38.3
Q ss_pred HHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceeccc
Q psy17612 223 RLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSK 286 (449)
Q Consensus 223 R~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~ 286 (449)
+..++.... -+..++. ..||+.+|+++.-+-+.|-+|...|-+.-.-|..
T Consensus 33 ~~~iL~~l~-~~~~~~~-------------~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~ 82 (142)
T 3bdd_A 33 RYSILQTLL-KDAPLHQ-------------LALQERLQIDRAAVTRHLKLLEESGYIIRKRNPD 82 (142)
T ss_dssp HHHHHHHHH-HHCSBCH-------------HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred HHHHHHHHH-hCCCCCH-------------HHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 334444433 3567899 9999999999999999999999998776655543
No 284
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=23.17 E-value=1.1e+02 Score=24.42 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=36.7
Q ss_pred ceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCE
Q psy17612 234 HQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGH 289 (449)
Q Consensus 234 y~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~ 289 (449)
+..++. ..||+.+|+++.-+-+.|-+|...|-+.-.-|...+.
T Consensus 41 ~~~~~~-------------~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R 83 (138)
T 3bpv_A 41 EPGIKQ-------------DELATFFHVDKGTIARTLRRLEESGFIEREQDPENRR 83 (138)
T ss_dssp STTCBH-------------HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCH-------------HHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCce
Confidence 577899 9999999999999999999999999887766654443
No 285
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=22.55 E-value=53 Score=25.25 Aligned_cols=20 Identities=15% Similarity=0.307 Sum_probs=18.5
Q ss_pred HHHHhhcCCChHHHHHHHHH
Q psy17612 357 IMLASKLNMGTDEAECWIVN 376 (449)
Q Consensus 357 ~~la~kLnm~~~eaE~WIvn 376 (449)
..||++|||+....+.|.-|
T Consensus 32 ~~LA~~l~LterQVkvWFqN 51 (64)
T 1x2m_A 32 EGLSKQLDWDVRSIQRWFRQ 51 (64)
T ss_dssp HHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 37999999999999999987
No 286
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=22.53 E-value=1.9e+02 Score=23.85 Aligned_cols=39 Identities=8% Similarity=0.050 Sum_probs=31.6
Q ss_pred ceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecc
Q psy17612 234 HQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDS 285 (449)
Q Consensus 234 y~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs 285 (449)
+..++. ..||+.+|+++.-+-+.|-+|...|=+.-+-|.
T Consensus 61 ~~~~t~-------------~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~ 99 (162)
T 2fa5_A 61 YPGSSA-------------SEVSDRTAMDKVAVSRAVARLLERGFIRRETHG 99 (162)
T ss_dssp STTCCH-------------HHHHHHHTCCHHHHHHHHHHHHHTTSEEC----
T ss_pred CCCCCH-------------HHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCC
Confidence 677889 999999999999999999999998877654444
No 287
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=22.11 E-value=1.8e+02 Score=22.71 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEe
Q psy17612 218 FVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIM 292 (449)
Q Consensus 218 fvenaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m 292 (449)
+-...|+.|+..... ...+. ..||+.+|+|+.-+-+-|-.|...|-+..+-+...-....
T Consensus 20 l~~~~r~~Il~~L~~--~~~~~-------------~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l 79 (102)
T 3pqk_A 20 LSHPVRLMLVCTLVE--GEFSV-------------GELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRL 79 (102)
T ss_dssp HCSHHHHHHHHHHHT--CCBCH-------------HHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEE
T ss_pred cCCHHHHHHHHHHHh--CCCCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEE
Confidence 334567778777654 45888 9999999999999999999999999887655544333333
No 288
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=22.05 E-value=2.9e+02 Score=22.24 Aligned_cols=43 Identities=9% Similarity=-0.011 Sum_probs=29.1
Q ss_pred hceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCC
Q psy17612 233 IHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLG 288 (449)
Q Consensus 233 iy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G 288 (449)
-+..++. ..||+.+|+++.-+-+.|-+|...|=+.-.-|...+
T Consensus 48 ~~~~~t~-------------~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~Dr 90 (142)
T 3ech_A 48 EQRGLNL-------------QDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQ 90 (142)
T ss_dssp HTTTCCH-------------HHHHHHHC---CHHHHHHHHHHHTTSEEC-------
T ss_pred hCCCcCH-------------HHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCC
Confidence 3567899 999999999999999999999998877665555443
No 289
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=21.98 E-value=1.5e+02 Score=23.60 Aligned_cols=43 Identities=12% Similarity=-0.021 Sum_probs=36.3
Q ss_pred ceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCE
Q psy17612 234 HQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGH 289 (449)
Q Consensus 234 y~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~ 289 (449)
+..+++ ..||+.+|+++.-+-+.|-+|...|-+.-.-|...+.
T Consensus 48 ~~~~t~-------------~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R 90 (142)
T 2fbi_A 48 QGEMES-------------YQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQR 90 (142)
T ss_dssp HCSEEH-------------HHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCH-------------HHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCC
Confidence 567999 9999999999999999999999999887665554433
No 290
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=21.91 E-value=1.9e+02 Score=25.11 Aligned_cols=56 Identities=13% Similarity=0.157 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhh-hceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCC
Q psy17612 220 ENARLMIFETFCR-IHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLG 288 (449)
Q Consensus 220 enaR~~ife~ycr-iy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G 288 (449)
......++....+ +...+++ ..||+.+|+++.-+-+.|-+|...|=+.-.-|...+
T Consensus 40 t~~q~~vL~~L~~~~~~~~t~-------------~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 96 (189)
T 3nqo_A 40 TSRQYMTILSILHLPEEETTL-------------NNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDK 96 (189)
T ss_dssp CHHHHHHHHHHHHSCGGGCCH-------------HHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred CHHHHHHHHHHHhccCCCcCH-------------HHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 3344445554444 4668999 999999999999999999999999988776665543
No 291
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=21.90 E-value=78 Score=26.14 Aligned_cols=43 Identities=14% Similarity=0.185 Sum_probs=35.1
Q ss_pred HHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHccccc
Q psy17612 224 LMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLD 280 (449)
Q Consensus 224 ~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLd 280 (449)
..|+. .+....+++. ..||+++|+|+.-+-+-|-+|...|-+.
T Consensus 7 ~~il~-~L~~~~~~~~-------------~ela~~lg~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 7 KIILE-ILEKDARTPF-------------TEIAKKLGISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp HHHHH-HHHHCTTCCH-------------HHHHHHHTSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHH-HHHHcCCCCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 34444 4455667888 9999999999999999999999999774
No 292
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=21.89 E-value=75 Score=29.30 Aligned_cols=65 Identities=15% Similarity=0.114 Sum_probs=53.9
Q ss_pred HhHHHHHHHHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCCEEEe
Q psy17612 213 ACLDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIM 292 (449)
Q Consensus 213 ~~~d~fvenaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G~V~m 292 (449)
.-.....+..|..|..-.++|-..++. ..||+.||||..=+-.-|..|-..|-+. +-+-.|.++.
T Consensus 26 s~~~~v~~~L~~~I~~g~l~pG~~L~e-------------~~La~~lgVSr~~VReAL~~L~~~Glv~--~~~~~G~~V~ 90 (237)
T 3c7j_A 26 LARTVIEEKLRNAIIDGSLPSGTALRQ-------------QELATLFGVSRMPVREALRQLEAQSLLR--VETHKGAVVA 90 (237)
T ss_dssp GHHHHHHHHHHHHHHTSSSCTTCBCCH-------------HHHHHHHTSCHHHHHHHHHHHHHTTSEE--EETTTEEEEC
T ss_pred ccHHHHHHHHHHHHHhCCCCCcCeeCH-------------HHHHHHHCCCHHHHHHHHHHHHHCCCEE--EeCCCceEEe
Confidence 344557789999999988999999999 9999999999999999999998888764 3344566654
No 293
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=21.66 E-value=1.9e+02 Score=24.48 Aligned_cols=51 Identities=8% Similarity=-0.009 Sum_probs=36.7
Q ss_pred HHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccC
Q psy17612 224 LMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKL 287 (449)
Q Consensus 224 ~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~ 287 (449)
..++....+-...+++ ..||+.+|+++.-+-+.|-+|...|-+.-+-|...
T Consensus 56 ~~vL~~L~~~~~~~t~-------------~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~D 106 (166)
T 3deu_A 56 WVTLHNIHQLPPDQSQ-------------IQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASD 106 (166)
T ss_dssp HHHHHHHHHSCSSEEH-------------HHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-----
T ss_pred HHHHHHHHHcCCCCCH-------------HHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCC
Confidence 3344444443567999 99999999999999999999999997766554433
No 294
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=21.56 E-value=57 Score=23.65 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=17.9
Q ss_pred HHHhhcCCChHHHHHHHHH
Q psy17612 358 MLASKLNMGTDEAECWIVN 376 (449)
Q Consensus 358 ~la~kLnm~~~eaE~WIvn 376 (449)
.||+.|||+......|.-|
T Consensus 37 ~La~~~~l~~~qV~~WFqN 55 (61)
T 1akh_A 37 EVAKKCGITPLQVRVWFIN 55 (61)
T ss_dssp HHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHH
Confidence 7899999999999999887
No 295
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=21.55 E-value=82 Score=26.98 Aligned_cols=48 Identities=8% Similarity=0.097 Sum_probs=38.2
Q ss_pred HHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHccccc---ceeccc
Q psy17612 225 MIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLD---AKIDSK 286 (449)
Q Consensus 225 ~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLd---aKIDs~ 286 (449)
.++. +++-..+++. ..||+++|+|+.-+-+.|-+|...|-+. +.+|..
T Consensus 14 ~il~-~L~~~~~~s~-------------~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 14 KILQ-VLQENGRLTN-------------VELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHHH-HHHHCTTCCH-------------HHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHH-HHHHcCCCCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChH
Confidence 3443 3445667899 9999999999999999999999999764 566654
No 296
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=21.30 E-value=3.9e+02 Score=22.89 Aligned_cols=31 Identities=6% Similarity=-0.063 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHh----cCChhhHHHHHHHHHhc
Q psy17612 14 MMESMYKLAKFRYE----CGNYSITTSYLYFYLLV 44 (449)
Q Consensus 14 ~~d~lyk~Akf~y~----~GdY~~A~~~L~~~~~l 44 (449)
..++++.+|.+|.+ .+|++.|.+++......
T Consensus 124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 35555556666655 55566655555554443
No 297
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=21.16 E-value=1.2e+02 Score=24.68 Aligned_cols=50 Identities=8% Similarity=0.113 Sum_probs=36.8
Q ss_pred HHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccC
Q psy17612 224 LMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKL 287 (449)
Q Consensus 224 ~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~ 287 (449)
..++.... -+..++. ..||+.+|+++.-+-+.|-+|...|=+.-.-|+..
T Consensus 39 ~~vL~~l~-~~~~~t~-------------~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D 88 (140)
T 3hsr_A 39 YIVLMAIE-NDEKLNI-------------KKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKD 88 (140)
T ss_dssp HHHHHHSC-TTCEEEH-------------HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----
T ss_pred HHHHHHHH-HcCCcCH-------------HHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCC
Confidence 33443333 3688999 99999999999999999999999887765554433
No 298
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=20.94 E-value=90 Score=26.38 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=38.9
Q ss_pred HHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccc---cceeccc
Q psy17612 223 RLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARL---DAKIDSK 286 (449)
Q Consensus 223 R~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rL---daKIDs~ 286 (449)
+..++. .++-..+++. ..||+++|+|+.-+-+.|-+|...|-+ .|.+|..
T Consensus 9 ~~~il~-~L~~~~~~s~-------------~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (151)
T 2cyy_A 9 DKKIIK-ILQNDGKAPL-------------REISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 61 (151)
T ss_dssp HHHHHH-HHHHCTTCCH-------------HHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCGG
T ss_pred HHHHHH-HHHHcCCCCH-------------HHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECHH
Confidence 334444 3444578899 999999999999999999999999976 3567753
No 299
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=20.85 E-value=76 Score=25.10 Aligned_cols=39 Identities=13% Similarity=0.053 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhhhceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHH
Q psy17612 218 FVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVN 272 (449)
Q Consensus 218 fvenaR~~ife~ycriy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVn 272 (449)
.++.+...|-+.+. ..+++ +.||+.+|||+.-+.+.+-.
T Consensus 3 ~i~~~~~~i~~~~~---~~~~~-------------~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 3 AVRQVEEYIEANWM---RPITI-------------EKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHHHHHTT---SCCCH-------------HHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccc---CCCCH-------------HHHHHHHCCCHHHHHHHHHH
Confidence 45566666666653 45889 99999999999887776655
No 300
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=20.77 E-value=1.3e+02 Score=24.01 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=35.7
Q ss_pred ceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccCC
Q psy17612 234 HQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLG 288 (449)
Q Consensus 234 y~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~G 288 (449)
+..++. ..||+.+|+++.-+-+.|-+|...|-+.-+.|...+
T Consensus 46 ~~~~~~-------------~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 87 (138)
T 1jgs_A 46 AACITP-------------VELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDK 87 (138)
T ss_dssp HSSBCH-------------HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCS
T ss_pred cCCCCH-------------HHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccC
Confidence 567888 999999999999999999999999988766655443
No 301
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=20.73 E-value=5.5e+02 Score=26.55 Aligned_cols=162 Identities=17% Similarity=0.212 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcchhhHHHHHHHHH-HhHhhcChHHHHHHHHHHHHHHhcCCCCCCChH
Q psy17612 16 ESMYKLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLA-SEILVQNWDLALEDLNKLREYIDGGSANFESPL 94 (449)
Q Consensus 16 d~lyk~Akf~y~~GdY~~A~~~L~~~~~l~~~~~~k~ls~lwgkla-~eIl~~dwd~a~~~l~kLke~id~~~~~~~~pl 94 (449)
+++...|..+++.|.|+.|..++... .-|+++| |-+..++++.|.+--.|+. +|
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a-------------~n~~~LA~~L~~Lg~yq~AVea~~KA~-----------~~- 177 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLGEYQAAVDGARKAN-----------ST- 177 (449)
T ss_dssp --------------CTTTHHHHHHHT-------------TCHHHHHHHHHTTTCHHHHHHHHHHHT-----------CH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-------------hhHHHHHHHHHHhccHHHHHHHHHHcC-----------Cc-
Confidence 47788888888888998888877633 2355555 4455568888888777661 22
Q ss_pred HHHHHHHHHHHHHHHHHhcC---ccchhhHHHHhcCCchhhhHHHhhhhHHHHHHHHHHHhccccccchHHHHHHHhhhc
Q psy17612 95 HLLQQRTWLIHWSLFVFFNH---VKGRDLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQES 171 (449)
Q Consensus 95 ~~l~qR~WliHwsLf~ffn~---~~g~~~~iD~F~~~~~yl~aIqt~cp~lLRYlvvA~Il~~~r~~~l~dlv~vi~qE~ 171 (449)
++|.- .++....+ ..|....+... ..|.-+-= +.... .+...+.|+++.+.+.-
T Consensus 178 -----~~Wk~--v~~aCv~~~ef~lA~~~~l~L~------------~~ad~l~~--lv~~Y--ek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 178 -----RTWKE--VCFACVDGKEFRLAQMCGLHIV------------VHADELEE--LINYY--QDRGYFEELITMLEAAL 234 (449)
T ss_dssp -----HHHHH--HHHHHHHTTCHHHHHHTTTTTT------------TCHHHHHH--HHHHH--HHTTCHHHHHHHHHHHT
T ss_pred -----hhHHH--HHHHHHHcCcHHHHHHHHHHHH------------hCHhhHHH--HHHHH--HHCCCHHHHHHHHHHHh
Confidence 45543 44555432 22211111111 22311110 11111 23345666666554442
Q ss_pred c--CCC-chHHHHHHHHhhcccHHHHHHHHHHHhhhcccc---------------cchHHhHHHHHHHHHHHH
Q psy17612 172 Y--TYK-DPITEFLEHLYVSFDFESAREKLTECTEVLDND---------------FFLVACLDEFVENARLMI 226 (449)
Q Consensus 172 ~--~Y~-DpiT~fv~~lYv~fdf~~aq~~L~~~~~vl~~D---------------fFL~~~~d~fvenaR~~i 226 (449)
. +.. .-+|++- -+|.+|.-+..++.|..-...+.-+ .||--+.++|-+.+-+++
T Consensus 235 ~le~ah~~~ftel~-il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 235 GLERAHMGMFTELA-ILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp TSTTCCHHHHHHHH-HHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 1 111 3367775 7788888888888776555444443 466666677776665554
No 302
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=20.55 E-value=68 Score=27.66 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=33.2
Q ss_pred HHHhhcCCChHHHHHHHHHHhhhcccc--cccccCCCeEEecCCCCChhHHH
Q psy17612 358 MLASKLNMGTDEAECWIVNLIRNARLD--AKIDSKLGHVIMGTQPLSPYQQL 407 (449)
Q Consensus 358 ~la~kLnm~~~eaE~WIvnLIr~~~ld--AKIDs~~~~v~m~~~~~svyqqv 407 (449)
.||+++|+++.+..+.|-+||..+=+. .+.|.. |...-.=.-.+.|+.+
T Consensus 56 ~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~-g~~~~~ydL~pL~ekL 106 (135)
T 2v79_A 56 QLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQN-GIKFEKYSLQPLWGKL 106 (135)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTT-CCEEEEEECHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCC-CceEEEeeHHHHHHHH
Confidence 679999999999999999999988663 233544 4443333333344433
No 303
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=20.45 E-value=72 Score=24.42 Aligned_cols=40 Identities=8% Similarity=0.173 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhhhce---eeEeeccccccccccchhhHHhhc-CCCHHHHHHHHHH
Q psy17612 220 ENARLMIFETFCRIHQ---CISIQKESNVIDKIFDGQMLASKL-NMGTDEAECWIVN 272 (449)
Q Consensus 220 enaR~~ife~ycriy~---~IsI~~~~~~~~~~~~~~~LA~~L-nms~~e~E~wIVn 272 (449)
+++|..|++.+++-.+ .+++ +.||+.- |.|-.+++..+-.
T Consensus 3 ~~~R~~Il~~~l~~~~~~~~vdl-------------~~la~~t~G~SGADi~~l~~e 46 (83)
T 3aji_B 3 RRQKRLIFSTITSKMNLSEEVDL-------------EDYVARPDKISGADINSICQE 46 (83)
T ss_dssp HHHHHHHHHHHHTTSCBCTTCCT-------------HHHHTSSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcccCH-------------HHHHHHcCCCCHHHHHHHHHH
Confidence 4689999999998654 4566 9999987 8998886654443
No 304
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=20.43 E-value=41 Score=30.00 Aligned_cols=39 Identities=10% Similarity=0.154 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHHHHhcC-----------ChhhHHHHHHHHHhcCCC
Q psy17612 9 QFKMDMMESMYKLAKFRYECG-----------NYSITTSYLYFYLLVMPT 47 (449)
Q Consensus 9 ~~~~e~~d~lyk~Akf~y~~G-----------dY~~A~~~L~~~~~l~~~ 47 (449)
.++|+..++++.+|..|+..| +|++|.+++.....+-|+
T Consensus 74 ~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 74 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 367888899999999999885 899999999988888774
No 305
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=20.32 E-value=42 Score=26.18 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=21.7
Q ss_pred cccccchhhHHhhcCCCHHHHHHHHHH
Q psy17612 246 IDKIFDGQMLASKLNMGTDEAECWIVN 272 (449)
Q Consensus 246 ~~~~~~~~~LA~~Lnms~~e~E~wIVn 272 (449)
|+..-....||+.||||+.-+=+|+-.
T Consensus 7 i~~~G~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 7 VRHFGDVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHSSHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHCCCHHHHHHHHhC
Confidence 344444589999999999999999854
No 306
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.26 E-value=56 Score=25.99 Aligned_cols=21 Identities=5% Similarity=0.177 Sum_probs=20.0
Q ss_pred hhHHhhcCCCHHHHHHHHHHH
Q psy17612 253 QMLASKLNMGTDEAECWIVNL 273 (449)
Q Consensus 253 ~~LA~~Lnms~~e~E~wIVnl 273 (449)
..||+.+|++.+.+..|..|-
T Consensus 36 ~~LA~~lgL~~~VVrVWFqNr 56 (71)
T 2da7_A 36 LKISIAVGLPQEFVKEWFEQR 56 (71)
T ss_dssp HHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHhhc
Confidence 899999999999999999984
No 307
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=20.19 E-value=1.7e+02 Score=23.88 Aligned_cols=40 Identities=8% Similarity=0.159 Sum_probs=34.5
Q ss_pred hceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecc
Q psy17612 233 IHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDS 285 (449)
Q Consensus 233 iy~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs 285 (449)
.+..+++ ..||+.+|+++.-+-+.|-+|...|-+.-.-|.
T Consensus 48 ~~~~~t~-------------~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~ 87 (155)
T 1s3j_A 48 KHGSLKV-------------SEIAERMEVKPSAVTLMADRLEQKNLIARTHNT 87 (155)
T ss_dssp HHSEEEH-------------HHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HcCCCCH-------------HHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCC
Confidence 3678999 999999999999999999999999877655544
No 308
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=20.19 E-value=1.3e+02 Score=24.44 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=34.6
Q ss_pred ceeeEeeccccccccccchhhHHhhcCCCHHHHHHHHHHHHHcccccceecccC
Q psy17612 234 HQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKL 287 (449)
Q Consensus 234 y~~IsI~~~~~~~~~~~~~~~LA~~Lnms~~e~E~wIVnlIr~~rLdaKIDs~~ 287 (449)
+..++. ..||+.+|+++.-+-+.|-+|...|-+.-.-|...
T Consensus 54 ~~~~t~-------------~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d 94 (150)
T 2rdp_A 54 EGDLTV-------------GELSNKMYLACSTTTDLVDRMERNGLVARVRDEHD 94 (150)
T ss_dssp HCSBCH-------------HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC-
T ss_pred cCCCCH-------------HHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCC
Confidence 567899 99999999999999999999999987766555433
Done!