RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17612
(449 letters)
>gnl|CDD|216479 pfam01399, PCI, PCI domain. This domain has also been called the
PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length = 100
Score = 66.5 bits (163), Expect = 9e-14
Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 178 ITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCI 237
+ L Y S D E L + + L D L L++ R + + + I
Sbjct: 1 YRDLLRAFY-SGDLSDFEEILADNEDELL-DDGLAELLEDLRRKIRELNLRRLAKPYSSI 58
Query: 238 SIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIM 292
S+ LA L + DE E + LIR+ R+ KID G V+
Sbjct: 59 SLS-------------DLAKLLGLSVDEVEKILSKLIRDGRIRGKIDQVNGIVVF 100
Score = 46.1 bits (110), Expect = 2e-06
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 358 MLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIM 396
LA L + DE E + LIR+ R+ KID G V+
Sbjct: 62 DLAKLLGLSVDEVEKILSKLIRDGRIRGKIDQVNGIVVF 100
>gnl|CDD|214803 smart00753, PAM, PCI/PINT associated module.
Length = 88
Score = 51.5 bits (124), Expect = 1e-08
Identities = 22/100 (22%), Positives = 31/100 (31%), Gaps = 16/100 (16%)
Query: 214 CLDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNL 273
++ RL + IS+ LA L + E E +
Sbjct: 2 LVERLQRKIRLTNLLQLSEPYSSISLS-------------DLAKLLGLSVPEVEKLVSKA 48
Query: 274 IRNARLDAKIDSKLGHVIMG-TQPL--SPYQQLLEKIDTL 310
IR+ + AKID G V P P Q E + L
Sbjct: 49 IRDGEISAKIDQVNGIVEFEEVDPRRSEPLAQFAETLKKL 88
Score = 41.5 bits (98), Expect = 4e-05
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 358 MLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMG-TQPL--SPYQQLLEKIDTL 414
LA L + E E + IR+ + AKID G V P P Q E + L
Sbjct: 29 DLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRRSEPLAQFAETLKKL 88
>gnl|CDD|214509 smart00088, PINT, motif in proteasome subunits, Int-6, Nip-1 and
TRIP-15. Also called the PCI (Proteasome, COP9,
Initiation factor 3) domain. Unknown function.
Length = 88
Score = 51.5 bits (124), Expect = 1e-08
Identities = 22/100 (22%), Positives = 31/100 (31%), Gaps = 16/100 (16%)
Query: 214 CLDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNL 273
++ RL + IS+ LA L + E E +
Sbjct: 2 LVERLQRKIRLTNLLQLSEPYSSISLS-------------DLAKLLGLSVPEVEKLVSKA 48
Query: 274 IRNARLDAKIDSKLGHVIMG-TQPL--SPYQQLLEKIDTL 310
IR+ + AKID G V P P Q E + L
Sbjct: 49 IRDGEISAKIDQVNGIVEFEEVDPRRSEPLAQFAETLKKL 88
Score = 41.5 bits (98), Expect = 4e-05
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 358 MLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMG-TQPL--SPYQQLLEKIDTL 414
LA L + E E + IR+ + AKID G V P P Q E + L
Sbjct: 29 DLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRRSEPLAQFAETLKKL 88
>gnl|CDD|220243 pfam09440, eIF3_N, eIF3 subunit 6 N terminal domain. This is the N
terminal domain of subunit 6 translation initiation
factor eIF3.
Length = 133
Score = 30.7 bits (70), Expect = 0.72
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 8 FQFKMDMMESMYKLAKFR 25
+M+ ++YK AKF+
Sbjct: 116 HGITSEMVNALYKFAKFQ 133
>gnl|CDD|197205 cd09106, PLDc_vPLD3_4_5_like_1, Putative catalytic domain, repeat
1, of vertebrate phospholipases, PLD3, PLD4 and PLD5,
viral envelope proteins K4 and p37, and similar
proteins. Putative catalytic domain, repeat 1, of
vertebrate phospholipases D, PLD3, PLD4, and PLD5 (EC
3.1.4.4), viral envelope proteins (vaccinia virus
proteins K4 and p37), and similar proteins. Most family
members contain two copies of the HKD motifs
(H-x-K-x(4)-D, where x represents any amino acid
residue), and have been classified into the
phospholipase D (PLD) superfamily. Proteins in this
subfamily are associated with Golgi membranes, altering
their lipid content by the conversion of phospholipids
into phosphatidic acid, which is thought to be involved
in the regulation of lipid movement. ADP ribosylation
factor (ARF), a small guanosine triphosphate binding
protein, might be required activity. The vaccinia virus
p37 protein, encoded by the F13L gene, is also
associated with Golgi membranes and is required for the
envelopment and spread of the extracellular enveloped
virus (EEV). The vaccinia virus protein K4, encoded by
the HindIII K4L gene, remains to be characterized.
Sequence analysis indicates that the vaccinia virus
proteins K4 and p37 might have evolved from one or more
captured eukaryotic genes involved in cellular lipid
metabolism. Up to date, no catalytic activity of PLD3
has been shown. Furthermore, due to the lack of
functional important histidine and lysine residues in
the HKD motif, mammalian PLD5 has been characterized as
an inactive PLD. The poxvirus p37 proteins may also lack
PLD enzymatic activity, since they contain only one
partially conserved HKD motif (N-x-K-x(4)-D).
Length = 153
Score = 28.8 bits (65), Expect = 3.9
Identities = 13/62 (20%), Positives = 22/62 (35%)
Query: 315 EALQALIERKVKVRNNSANAGGENSWASKEMLASKADLNVITIMLASKLNMGTDEAECWI 374
AL +R VK+R + LA+ V ++ + G + WI
Sbjct: 63 NALLEAAKRGVKIRILQDKPSKDKPDEDDLELAALGGAEVRSLDFTKLIGGGVLHTKFWI 122
Query: 375 VN 376
V+
Sbjct: 123 VD 124
>gnl|CDD|180982 PRK07452, PRK07452, DNA polymerase III subunit delta; Validated.
Length = 326
Score = 29.5 bits (67), Expect = 4.0
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 12/51 (23%)
Query: 59 KLASEILVQNWDLALEDLNKLREYIDGGSANFESPLHLL-----QQRTWLI 104
+LA +L N AL L+ L +D E L ++ Q RTWL
Sbjct: 205 QLADALLQGNTGKALALLDDL---LDAN----EPALRIVATLTGQFRTWLW 248
>gnl|CDD|206047 pfam13876, Phage_gp49_66, Phage protein (N4 Gp49/phage Sf6 gene 66)
family. This family of phage proteins is functionally
uncharacterized. The family includes bacteriophage Sf6
gene 66, as well as phage N4 GP49 protein. Proteins in
this family are typically between 87 and 154 amino acids
in length. There is a conserved NGF sequence motif.
Length = 79
Score = 26.7 bits (60), Expect = 7.5
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 180 EFLEHLYVSFDFESARE-KLTECTEVLDNDFFLV---ACLD 216
E +E L S ++ + + LT C L N F + AC+D
Sbjct: 5 EDIESLIASEEYFTVGDGTLTVCVLTLRNGFTVTGESACVD 45
>gnl|CDD|130335 TIGR01268, Phe4hydrox_tetr, phenylalanine-4-hydroxylase, tetrameric
form. This model describes the larger, tetrameric form
of phenylalanine-4-hydroxylase, as found in metazoans.
The enzyme irreversibly converts phenylalanine to
tryosine and is known to be the rate-limiting step in
phenylalanine catabolism in some systems. It is closely
related to metazoan tyrosine 3-monooxygenase and
tryptophan 5-monoxygenase, and more distantly to
monomeric phenylalanine-4-hydroxylases of some
Gram-negative bacteria. The member of this family from
Drosophila has been described as having both
phenylalanine-4-hydroxylase and tryptophan
5-monoxygenase activity (PMID:1371286). However, a
Drosophila member of the tryptophan 5-monoxygenase clade
has subsequently been discovered.
Length = 436
Score = 28.3 bits (63), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 175 KDPITEFLEHLYVSFDFESAREKLTE 200
K PITEF +++ FE A+EKL
Sbjct: 360 KYPITEFQPLYFLAESFEDAKEKLKS 385
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.401
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,709,686
Number of extensions: 2228178
Number of successful extensions: 1962
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1959
Number of HSP's successfully gapped: 17
Length of query: 449
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 349
Effective length of database: 6,502,202
Effective search space: 2269268498
Effective search space used: 2269268498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.2 bits)