RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17612
(449 letters)
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha
solenoid, regulatory PART LID, hydrolase, protein
binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Length = 394
Score = 69.5 bits (169), Expect = 5e-13
Identities = 39/304 (12%), Positives = 91/304 (29%), Gaps = 27/304 (8%)
Query: 20 KLAKFRYECGNYSITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALEDLNKL 79
+L ++ Y+ + L + D L V L S+ AL +L K
Sbjct: 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTY-----HALSNLPKA 158
Query: 80 REYIDGGSANFESPLHLLQQRTWLIHWSLFVFFNHVKGRDLIIDMFL-NRPHYLNAIQTM 138
R + + + + L S + + F + +
Sbjct: 159 RAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVK 218
Query: 139 CPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPITEFLEHL---YVSFDFESAR 195
L+Y+ I+ + + + V + + TY + ++ + +
Sbjct: 219 ALTSLKYMLLCKIML-GQSDDVN--QLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQ 275
Query: 196 EKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQML 255
L E + L D + A L + + + + +
Sbjct: 276 AALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAH-------------V 322
Query: 256 ASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGT--QPLSPYQQLLEKIDTLSVR 313
A + + + E + +I + + +D G +I+ Y+++LE I ++
Sbjct: 323 AESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKV 382
Query: 314 SEAL 317
+ L
Sbjct: 383 VDTL 386
Score = 41.0 bits (95), Expect = 6e-04
Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 348 SKADLNVITIMLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGT--QPLSPYQ 405
+ V +A + + + E + +I + + +D G +I+ Y+
Sbjct: 311 IEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYE 370
Query: 406 QLLEKIDTLSVRSEAL 421
++LE I ++ + L
Sbjct: 371 RVLETIQSMGKVVDTL 386
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 8e-10
Identities = 85/532 (15%), Positives = 149/532 (28%), Gaps = 166/532 (31%)
Query: 32 SITTSYLYFYLLVMPTSDRHYLAVLWGKLASEILVQNWDLALED--------LNKLREYI 83
S+ LLV PT+ + L + + A +D + K Y+
Sbjct: 15 SLEHV-----LLV-PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 84 -----DGGSANFESPLHL-LQ--QRTWL----IHWSLFVFFNH------VKGRDLI---- 121
F+ L+L L + +L IH +L VK ++LI
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH-ALAAKLLQENDTTLVKTKELIKNYI 127
Query: 122 -IDMFLNRPHY-------LNAIQTMCPHI----------------LRYL----ATAV--I 151
+ RP A+ + LR L V +
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL 187
Query: 152 INRSKRNALKDLVKVIQQESYTYKD--------------PITEFLEHLYVSF-------- 189
I S L +L++ + P ++L + +S
Sbjct: 188 IKFS-AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL 246
Query: 190 ---------------DFESAREKLTECTEVLDNDFFLVACL-------DEFVENARLMIF 227
+ S + T ++ L + A + F + R I
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGL-----VTAVAIAETDSWESFFVSVRKAIT 301
Query: 228 ETF---CRIHQCISIQ--KESNVIDKIFDGQ-----MLASKLNMGTDEAECWIVNLIRNA 277
F R ++ S + D + + + ML+ N+ ++ + ++ N+
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS-NLTQEQVQDYVNKT--NS 358
Query: 278 RLDAK-------IDSKLGHVIMGTQPLSPY--QQLLEKIDTLSVRSEALQALI---ERKV 325
L A ++ V+ G P S Y L K S Q+ I ERK+
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVSGP-PQSLYGLNLTLRKA---KAPSGLDQSRIPFSERKL 414
Query: 326 KVRN--------------NSANAGGENSWASKEMLASKADLN--VITIMLASKLNMGTDE 369
K N A+ + + D+ V S L + +
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474
Query: 370 AECWIVNLIRNARLD--AKIDSKLGHVI-MGTQPLSPYQQLLEKI-DTLSVR 417
IV+ I + K H++ G S L + D VR
Sbjct: 475 ISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVR 526
Score = 43.1 bits (101), Expect = 2e-04
Identities = 42/293 (14%), Positives = 77/293 (26%), Gaps = 92/293 (31%)
Query: 184 HLYVSFD-----FESAREKLTEC-----TEVLDND------FFLVACLDEFVENARLMIF 227
LY + + A + +++ N+ F EN MIF
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 228 ETFCRIH-QCISIQKESN--VIDKIFDGQMLASKLN--------MGTDEAECWIVNLIRN 276
ET + I KE N F + L+ + E +++
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSE--KGLLSATQFTQPALTL--MEKAAFEDLKS 1749
Query: 277 ARLDAKIDSKLGH-------------VIMGTQPLSPYQQLLEKIDTLSVRSEALQALIER 323
L + GH V+ + ++ + R +Q + R
Sbjct: 1750 KGLIPADATFAGHSLGEYAALASLADVM----SIE------SLVEVVFYRGMTMQVAVPR 1799
Query: 324 KVKVRNNSANAGGENSWASKEMLASKADLNVITIMLASKLNMGTDEAECWIVNLIRNARL 383
R+N + S+ L + + + T IVN N
Sbjct: 1800 DELGRSNYGMIAINPGRVAASF--SQEALQYVVERVGKR----TGW-LVEIVNY--N--- 1847
Query: 384 DAKIDSKLGHVIMGTQPLSPYQQL-----LEKIDTLSVRSEALQALIERKVKV 431
QQ L +DT+ + L + +K+ +
Sbjct: 1848 ------------------VENQQYVAAGDLRALDTV---TNVLNFIKLQKIDI 1879
Score = 30.8 bits (69), Expect = 1.3
Identities = 23/143 (16%), Positives = 39/143 (27%), Gaps = 38/143 (26%)
Query: 81 EYIDGGSA--------NFESPLHLLQQRTWLIHWSLFVFFNHVKGRDLIIDMFLNRPHYL 132
EY +A + ES + ++ R + GR M P +
Sbjct: 1766 EY----AALASLADVMSIESLVEVVFYRGMTMQ---VAVPRDELGRSN-YGMIAINPGRV 1817
Query: 133 N------AIQTMCPHILRYLATAVII---NRS--------KRNALKDLVKVIQQESYTYK 175
A+Q + + + V I N AL + V+ ++
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVL---NFIKL 1874
Query: 176 DPITEFLEHLYVSFDFESAREKL 198
I + L S E L
Sbjct: 1875 QKID--IIELQKSLSLEEVEGHL 1895
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 7e-09
Identities = 41/281 (14%), Positives = 93/281 (33%), Gaps = 63/281 (22%)
Query: 167 IQQESYTYKDPITEFLEHLYVSFDF----ESAREKLTECTEVLDNDFFLVACLDEFVENA 222
+ Y YKD ++ F + +FD + + L+ E +D+ ++ D +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS--KEEIDH---IIMSKDA--VSG 63
Query: 223 RLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNARLDAK 282
L +F T K+ ++ K + + ++N ++++ I+ +
Sbjct: 64 TLRLFWTLL--------SKQEEMVQKFVEEVL---RINYK------FLMSPIKTEQRQPS 106
Query: 283 ID-----SKLGHVIMGTQPLSPYQ-QLLEKIDTLSVRSEALQALI-ERKVKVRNNSANAG 335
+ + + Q + Y L+ L +AL L + V +
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL---RQALLELRPAKNVLID----GVL 159
Query: 336 GENSWASKEMLASKA--DLNVITIMLASKLNMGTDEAECWI-VNLIRNARLDAKIDSKLG 392
G + K +A V M D W+ + + ++ KL
Sbjct: 160 G----SGKTWVALDVCLSYKVQCKM---------DFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 393 HVIMGTQPLSPYQQLLEKIDTLSVRSEALQALIERKVKVRN 433
+ I + + + +R ++QA + R +K +
Sbjct: 207 YQID-----PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Score = 51.4 bits (122), Expect = 5e-07
Identities = 37/248 (14%), Positives = 77/248 (31%), Gaps = 81/248 (32%)
Query: 38 LYFYLLVMPTSDR---HYLAVLWGKLASEILVQNWDLALEDLNKLREY--IDGGSANFES 92
++ L V P S L+++W + + +NKL +Y ++
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSD-------VMVVVNKLHKYSLVEKQPKESTI 426
Query: 93 PLHLLQQRTWL-------IH---------------WSLFV------FFNHV------KGR 118
+ + + +H L F++H+
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 119 DLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPI 178
+ +F R +L+ R+L + + + NA ++ +QQ + YK I
Sbjct: 487 PERMTLF--RMVFLD---------FRFLEQKIRHDSTAWNASGSILNTLQQLKF-YKPYI 534
Query: 179 TEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCIS 238
D + E+L +LD FL L+ + + + + I+
Sbjct: 535 C----------DNDPKYERLVN--AILD---FLPKI------EENLICSK-YTDLLR-IA 571
Query: 239 IQKESNVI 246
+ E I
Sbjct: 572 LMAEDEAI 579
Score = 37.1 bits (85), Expect = 0.011
Identities = 62/406 (15%), Positives = 134/406 (33%), Gaps = 104/406 (25%)
Query: 63 EILVQNWDLA-LEDLNKLREYIDGGSANFESPLHLLQQ-----RTWLIHWSLFVFFNHVK 116
+ V N+D ++D+ + + + H++ T + W+L K
Sbjct: 27 DAFVDNFDCKDVQDM--PKSILS--KEEID---HIIMSKDAVSGTLRLFWTLLS-----K 74
Query: 117 GRDLIIDMFLN---RPHY---LNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQE 170
+ ++ F+ R +Y ++ I+T + T + I +R+ L + +V +
Sbjct: 75 QEE-MVQKFVEEVLRINYKFLMSPIKTEQ--RQPSMMTRMYI--EQRDRLYNDNQVFAKY 129
Query: 171 SYTYKDPITEFLEHL-------YVSFD-----------FESAREKLTECTEVLDNDFFLV 212
+ + P + + L V D + +C +D F +
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC--KMDFKIFWL 187
Query: 213 ACLDEFVENARLMIFETFCRI---HQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECW 269
+ L + + + SN+ +I Q +L C
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 270 IVNL--IRNAR-LDA-KIDSKLGHVIMGTQPLSPYQQLLEKIDTLSVRSEALQALIERKV 325
+V L ++NA+ +A + K +++ T+ V ++ L A +
Sbjct: 248 LV-LLNVQNAKAWNAFNLSCK---ILLTTR------------FK-QV-TDFLSAATTTHI 289
Query: 326 KVRNNSANAGGENSWASKEMLASKADLN-------VITI------MLASKLNMGTDEAEC 372
+ ++S K +L D V+T ++A + G +
Sbjct: 290 SLDHHS---MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 373 WIVNLIRNARLDAKIDSKLGHVIMGTQPLSP--YQQLLEKIDTLSV 416
W + +L I+S L L P Y+++ ++ LSV
Sbjct: 347 W--KHVNCDKLTTIIESSLNV-------LEPAEYRKMFDR---LSV 380
Score = 29.4 bits (65), Expect = 3.2
Identities = 21/155 (13%), Positives = 44/155 (28%), Gaps = 37/155 (23%)
Query: 19 YKLAKFRYECGNYSITT--SYLYFY----LLVMPTSDRH------YLAVLW--GKLASEI 64
Y + K ++ + Y Y + L + +R +L + K+ +
Sbjct: 453 YNIPK-TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 65 LVQNW-----DLALEDLNKLREYIDGGSANFESPLHLLQQRTWLIHWSLFVFFNHVKGRD 119
N + L+ L + YI +E ++ + F +
Sbjct: 512 TAWNASGSILNT-LQQLKFYKPYICDNDPKYERLVNAILD------------FLPKIEEN 558
Query: 120 LIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINR 154
LI + + L I M + + R
Sbjct: 559 LICSKYTD----LLRIALMAEDEAIFEEAHKQVQR 589
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export,
transcription; 2.12A {Homo sapiens}
Length = 203
Score = 39.9 bits (93), Expect = 7e-04
Identities = 21/144 (14%), Positives = 50/144 (34%), Gaps = 6/144 (4%)
Query: 156 KRNALKDLVKV-IQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDN--DFFLV 212
KR L L+ V + + + ++ + + L E L FF+
Sbjct: 52 KRMILIYLLPVKMLLGHMPTVELLKKYHLMQFAEVTRAVSEGNLLLLHEALAKHEAFFIR 111
Query: 213 ACLDEFVENARLMIFETFCRIHQCISIQKESNV-IDKIFDGQMLASKLNMGTDEAECWIV 271
+ +E +++ + + + + K + +D ++ DE +C +
Sbjct: 112 CGIFLILEKLKIITYRNLFK--KVYLLLKTHQLSLDAFLVALKFMQVEDVDIDEVQCILA 169
Query: 272 NLIRNARLDAKIDSKLGHVIMGTQ 295
NLI + I + +++ Q
Sbjct: 170 NLIYMGHVKGYISHQHQKLVVSKQ 193
Score = 34.1 bits (78), Expect = 0.048
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 359 LASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQ 399
++ DE +C + NLI + I + +++ Q
Sbjct: 153 FMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQ 193
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Length = 84
Score = 32.9 bits (75), Expect = 0.027
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 255 LASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHV 290
L + L + +AE +I R++ ID G V
Sbjct: 36 LGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIV 71
Score = 32.9 bits (75), Expect = 0.027
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 359 LASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHV 394
L + L + +AE +I R++ ID G V
Sbjct: 36 LGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIV 71
>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer,
psychrophilic bacteria, crystallography, hydrolase;
1.40A {Vibrio SP}
Length = 502
Score = 30.6 bits (69), Expect = 1.3
Identities = 26/173 (15%), Positives = 47/173 (27%), Gaps = 60/173 (34%)
Query: 111 FFNHVKGR---DLIIDMFLN----------RPHYL---NAIQTMCPHILRYLATAVIINR 154
F H R + I L H++ + L L + +
Sbjct: 122 FAAHQPHRSLENQIASDMLATGADVMLSGGLRHWIPKSTNDKGETYKQLEKLTQGDVYLK 181
Query: 155 SKRNALKDLVKVIQQESYTYKDPITEFL-------------EHLYVSFDFESAREK---- 197
SKR ++L+ +++ Y + + + ++
Sbjct: 182 SKRKDDRNLLTEAEKDGYQLAFNRNMLDDAKGDKLLGLFAYSGMDDGIAYSNKKKSGERT 241
Query: 198 ---LTECTE----VLDND---FFLVACLDEFVE-----------NARLMIFET 229
L E T+ +L D FFL VE +A M+ E
Sbjct: 242 QPSLKEMTQKALNILSKDEDGFFL------MVEGGQIDWAGHSNDAGTMLHEL 288
>1mlw_A Tryptophan 5-monooxygenase; aromatic amino acid hydroxylase
catalytic domain fold, oxidoreductase; HET: HBI; 1.71A
{Homo sapiens} SCOP: d.178.1.1 PDB: 3hf6_A* 3hf8_A*
3hfb_A* 3e2t_A*
Length = 301
Score = 30.0 bits (67), Expect = 1.6
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 162 DLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDF 209
D +QE IT F + +VS FE A+EK+ E T+ + F
Sbjct: 254 DPKITCKQEC-----LITTFQDVYFVSESFEDAKEKMREFTKTIKRPF 296
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid
hydroxylase, phosphorylation, intrasteric regulation,
allosteric regulation; 2.20A {Rattus norvegicus} SCOP:
d.58.18.3 d.178.1.1 PDB: 2phm_A
Length = 429
Score = 30.1 bits (67), Expect = 1.6
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 162 DLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDF 209
+L K QE +TEF YV+ F A+EK+ + F
Sbjct: 368 ELEKTACQEY-----SVTEFQPLYYVAESFSDAKEKVRTFAATIPRPF 410
>1j8u_A Phenylalanine-4-hydroxylase; ferrous iron, 2-His-1-carboxylate
facial triad, tetrahydrobiopterin, oxidoreductase; HET:
H4B; 1.50A {Homo sapiens} SCOP: d.178.1.1 PDB: 1j8t_A*
1kw0_A* 1lrm_A* 1mmk_A* 1mmt_A* 4anp_A* 2pah_A 1pah_A
3pah_A* 4pah_A* 5pah_A* 6pah_A* 1tdw_A 1tg2_A* 1dmw_A*
Length = 325
Score = 29.7 bits (66), Expect = 1.8
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 162 DLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDF 209
+L K Q +TEF YV+ F A+EK+ + F
Sbjct: 266 ELEKTAIQNY-----TVTEFQPLYYVAESFNDAKEKVRNFAATIPRPF 308
>1toh_A Tyroh, tyrosine hydroxylase; neurotransmitter biosynthesis,
non-heme iron, P substrate; 2.30A {Rattus norvegicus}
SCOP: d.178.1.1 PDB: 2toh_A* 2xsn_A
Length = 343
Score = 29.7 bits (66), Expect = 2.0
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 5/50 (10%)
Query: 162 DLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFL 211
D Q + +VS F A++KL + F +
Sbjct: 259 DPDTAAVQPY-----QDQTYQPVYFVSESFNDAKDKLRNYASRIQRPFSV 303
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA,
nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Length = 455
Score = 29.7 bits (66), Expect = 2.1
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 264 DEAECWIVNLIRNARLDAKIDSKLGHV 290
E +V LI L A +L
Sbjct: 398 KNVENVLVTLINLGLLRANCFPQLQLC 424
Score = 29.7 bits (66), Expect = 2.1
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 368 DEAECWIVNLIRNARLDAKIDSKLGHV 394
E +V LI L A +L
Sbjct: 398 KNVENVLVTLINLGLLRANCFPQLQLC 424
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase
paralog, translation, lysyl- synthetase, lysyladenylate
analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A*
3g1z_A*
Length = 345
Score = 28.7 bits (65), Expect = 4.4
Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 6/77 (7%)
Query: 160 LKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTE------CTEVLDNDFFLVA 213
L+ ++ ES +Y+ +LE +S D RE + D D L
Sbjct: 155 LQQVLDCPAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKLDLSNVADTEEDRDTLLQL 214
Query: 214 CLDEFVENARLMIFETF 230
VE TF
Sbjct: 215 LFTFGVEPNIGKEKPTF 231
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE; 2.30A {Shewanella oneidensis}
Length = 407
Score = 28.6 bits (64), Expect = 4.8
Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 15/76 (19%)
Query: 126 LNRPHYLNAI-QTMCPHILRYL--------ATAVIINRSKRNAL------KDLVKVIQQE 170
LN LNA+ M + L V+++ S A + L
Sbjct: 57 LNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAA 116
Query: 171 SYTYKDPITEFLEHLY 186
+ F E Y
Sbjct: 117 KGQVTEVAKVFFEEEY 132
>2jsw_A Talin-1; C-terminal actin binding site, ABS3, thatch domain,
cytoskeleton, phosphorylation, structural protein,
actin- binding protein; NMR {Mus musculus}
Length = 189
Score = 28.1 bits (62), Expect = 5.3
Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 2/107 (1%)
Query: 271 VNLIRNARLDAKIDSKLGHVIMGTQPLSPYQQLLEKIDTLSVRSEALQALIERKVKVRNN 330
+ + AK + Q L + + L + A Q + + KV
Sbjct: 27 AKKLEQLKPRAKPKEADESLNFEEQILEAAKSIAAATSALVKAASAAQRELVAQGKVGAI 86
Query: 331 SANAGGENSWASKEMLASKADLNVITIML--ASKLNMGTDEAECWIV 375
ANA + W+ + A++ + A+ G E I
Sbjct: 87 PANALDDGQWSQGLISAARMVAAATNNLCEAANAAVQGHASQEKLIS 133
>1sfe_A ADA O6-methylguanine-DNA methyltransferase; enzyme, nucleic acid
binding DNA repair protein, DNA-binding protein; 2.10A
{Escherichia coli} SCOP: a.4.2.1 c.55.7.1
Length = 180
Score = 27.6 bits (62), Expect = 6.4
Identities = 6/54 (11%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 53 LAVLWGKLASEILVQNWDLALEDLNKLREYIDGGSANFESPLHLL----QQRTW 102
++ L + + + + ++ ++ PL + QQ+ W
Sbjct: 49 ISELQQMFPAADNAPADLMFQQHVREVIASLNQRDTPLTLPLDIRGTAFQQQVW 102
>1v0w_A Phospholipase D; hydrolase, substrate SOAK,
dibutyrylphosphatidylcholine, DIC4PC; 1.35A
{Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A
1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A*
2ze9_A*
Length = 506
Score = 28.1 bits (62), Expect = 7.3
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 270 IVNLIRNARLDAKIDSKLGHVIMGTQPLSPYQQLLEKIDTLSVRSEALQALIERKVKVR 328
VN +A + S GH+ + Q L+ L + D +AL A + VKVR
Sbjct: 311 TVNPEESALRAL-VASAKGHIEISQQDLNATCPPLPRYDIRLY--DALAAKMAAGVKVR 366
Score = 28.1 bits (62), Expect = 7.3
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 374 IVNLIRNARLDAKIDSKLGHVIMGTQPLSPYQQLLEKIDTLSVRSEALQALIERKVKVR 432
VN +A + S GH+ + Q L+ L + D +AL A + VKVR
Sbjct: 311 TVNPEESALRAL-VASAKGHIEISQQDLNATCPPLPRYDIRLY--DALAAKMAAGVKVR 366
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.401
Gapped
Lambda K H
0.267 0.0473 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,715,844
Number of extensions: 400377
Number of successful extensions: 729
Number of sequences better than 10.0: 1
Number of HSP's gapped: 724
Number of HSP's successfully gapped: 31
Length of query: 449
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 352
Effective length of database: 3,993,456
Effective search space: 1405696512
Effective search space used: 1405696512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.1 bits)