RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17612
         (449 letters)



>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 84

 Score = 50.5 bits (121), Expect = 5e-09
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 17/81 (20%)

Query: 218 FVENARLMIFETFCRIHQCISIQKESNVIDKIFDGQMLASKLNMGTDEAECWIVNLIRNA 277
            +E+  L   + +  I                   + L + L +   +AE     +I   
Sbjct: 16  VIEHNLLSASKLYNNIT-----------------FEELGALLEIPAAKAEKIASQMITEG 58

Query: 278 RLDAKIDSKLGHVIMGTQPLS 298
           R++  ID   G V   T+  S
Sbjct: 59  RMNGFIDQIDGIVHFETREAS 79



 Score = 47.1 bits (112), Expect = 1e-07
 Identities = 12/45 (26%), Positives = 19/45 (42%)

Query: 358 MLASKLNMGTDEAECWIVNLIRNARLDAKIDSKLGHVIMGTQPLS 402
            L + L +   +AE     +I   R++  ID   G V   T+  S
Sbjct: 35  ELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREAS 79


>d1toha_ d.178.1.1 (A:) Tyrosine hydroxylase {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 336

 Score = 30.9 bits (70), Expect = 0.31
 Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 23/74 (31%)

Query: 162 DLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKL------------------TECTE 203
           D      Q           +    +VS  F  A++KL                  T   +
Sbjct: 252 DPDTAAVQPY-----QDQTYQPVYFVSESFNDAKDKLRNYASRIQRPFSVKFDPYTLAID 306

Query: 204 VLDNDFFLVACLDE 217
           VLD+   +   L+ 
Sbjct: 307 VLDSPHTIQRSLEG 320


>d1j8ua_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 307

 Score = 29.0 bits (65), Expect = 1.1
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 162 DLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFL 211
           +L K   Q        +TEF    YV+  F  A+EK+      +   F +
Sbjct: 251 ELEKTAIQNY-----TVTEFQPLYYVAESFNDAKEKVRNFAATIPRPFSV 295


>d1mlwa_ d.178.1.1 (A:) Tryptophan hydroxylase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 290

 Score = 27.4 bits (61), Expect = 2.9
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 5/39 (12%)

Query: 162 DLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTE 200
           D     +QE       IT F +  +VS  FE A+EK+ E
Sbjct: 252 DPKITCKQEC-----LITTFQDVYFVSESFEDAKEKMRE 285


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,644,416
Number of extensions: 76328
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 12
Length of query: 449
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 361
Effective length of database: 1,199,356
Effective search space: 432967516
Effective search space used: 432967516
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.8 bits)