Query psy17613
Match_columns 287
No_of_seqs 204 out of 1078
Neff 7.1
Searched_HMMs 13730
Date Fri Aug 16 18:34:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17613.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17613hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 56.4 5.5 0.0004 30.1 4.2 74 62-152 16-96 (146)
2 d1a3aa_ d.112.1.1 (A:) Phospho 48.6 4.4 0.00032 29.9 2.4 33 20-52 112-144 (145)
3 d1a6ja_ d.112.1.1 (A:) Nitroge 43.5 7.8 0.00057 28.5 3.2 33 19-51 116-148 (150)
4 d2g5ca1 a.100.1.12 (A:201-310) 38.0 15 0.0011 25.9 3.9 26 4-29 65-90 (110)
5 d2f1ka1 a.100.1.12 (A:166-279) 32.9 19 0.0014 25.5 3.7 26 4-29 67-92 (114)
6 d1jmxa1 a.3.1.7 (A:2-85) Quino 29.7 13 0.00097 25.1 2.2 17 41-57 55-71 (84)
7 d1pbya1 a.3.1.7 (A:1-85) Quino 26.8 16 0.0012 24.6 2.3 17 41-57 55-71 (85)
8 d1ivsa1 a.2.7.3 (A:797-862) Va 24.4 51 0.0037 20.5 4.4 34 2-35 2-35 (66)
9 d1y74b1 a.194.1.1 (B:83-132) P 21.6 72 0.0053 19.2 4.3 39 4-43 3-43 (50)
10 d1p0za_ d.110.6.1 (A:) Sensor 20.2 67 0.0049 22.4 4.9 35 16-51 8-43 (131)
No 1
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=56.41 E-value=5.5 Score=30.13 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=39.8
Q ss_pred cccccccccccccccccccccCCCCcchhHHHHHHhhhcCchhhHhHhhhH-------HHhHHHHHHHhhhcccCCCCCC
Q psy17613 62 VYGTMCVGAEASQQYVTKRYLPSFSCPVSTIMIRRFFNNYPLLSNCAVYGT-------MCVGAEASQQYVTKRYLNPTTP 134 (287)
Q Consensus 62 ~f~~~cg~y~a~~l~~~~~~l~~~~~~a~~~~y~~~l~~~P~lt~~i~s~v-------l~~~gD~laQ~~~~~~~~~~~~ 134 (287)
+|.| ||--.++||++. ++.+. ...-+..+++|...-+.+...+ .-.++.++.+...
T Consensus 16 ~~~~-cg~~~~e~l~~p--~~~ti-----k~~v~~i~~kh~~~F~~ml~~L~i~~~~~~~~f~~V~~elF~--------- 78 (146)
T d1k3ka_ 16 IFMA-CGLNEPEYLYHP--LLSPI-----KLYITGLMRDKESLFEAMLANVRFHSTTGIDQLGLSMLQVSG--------- 78 (146)
T ss_dssp HHHT-STTCCCSSCCCS--SCSHH-----HHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHTHHHHHCS---------
T ss_pred HHHh-ccCCchHhhcCc--hhHHH-----HHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHc---------
Confidence 4445 999899998764 12211 1122444444444333222221 2233444444332
Q ss_pred CCCCchhhHHHHhhhccc
Q psy17613 135 PEPIDTAALGRYAILGTC 152 (287)
Q Consensus 135 ~~~~D~~R~~r~~~~G~~ 152 (287)
...++|.|.+.+..||..
T Consensus 79 DG~~NWGRIVaLfaFg~~ 96 (146)
T d1k3ka_ 79 DGNMNWGRALAILTFGSF 96 (146)
T ss_dssp SCSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 345799999999999864
No 2
>d1a3aa_ d.112.1.1 (A:) Phosphotransferase IIa-mannitol {Escherichia coli [TaxId: 562]}
Probab=48.63 E-value=4.4 Score=29.86 Aligned_cols=33 Identities=15% Similarity=0.332 Sum_probs=29.2
Q ss_pred HHHHHHhcCCHHHHHHhhchhhHHHHHHHHHhh
Q psy17613 20 VTVVLNLLSNDAVMKQMESVRDQKTLCTYLTKE 52 (287)
Q Consensus 20 ~~~i~~~l~~~~v~~~l~~~rd~~~~~~~L~~~ 52 (287)
.+.+.++++|++.+++|.+.+|....++.|+++
T Consensus 112 l~~l~~~l~d~~~~~~l~~~~~~~ei~~~l~~~ 144 (145)
T d1a3aa_ 112 ITSLTNALDDESVIERLAHTTSVDEVLELLAGR 144 (145)
T ss_dssp HHHHHHHTCSHHHHHHHHHCCCHHHHHHHTTTC
T ss_pred HHHHHHHHCCHHHHHHHHhCCCHHHHHHHHccC
Confidence 456889999999999999999999999988764
No 3
>d1a6ja_ d.112.1.1 (A:) Nitrogen regulatory bacterial protein IIa-ntr {Escherichia coli [TaxId: 562]}
Probab=43.52 E-value=7.8 Score=28.55 Aligned_cols=33 Identities=12% Similarity=0.397 Sum_probs=29.7
Q ss_pred hHHHHHHhcCCHHHHHHhhchhhHHHHHHHHHh
Q psy17613 19 SVTVVLNLLSNDAVMKQMESVRDQKTLCTYLTK 51 (287)
Q Consensus 19 ~~~~i~~~l~~~~v~~~l~~~rd~~~~~~~L~~ 51 (287)
-.+.+..+++|++.+++|.+.++.....+.|.+
T Consensus 116 ~l~~l~~~l~d~~~~~~L~~a~~~~ei~~il~~ 148 (150)
T d1a6ja_ 116 TLSLVAKRLADKTICRRLRAAQSDEELYQIITD 148 (150)
T ss_dssp HHHHHHHHHTCHHHHHHHHHCCSHHHHHHHHHT
T ss_pred HHHHHHHHHCCHHHHHHHHhCcCHHHHHHHHHh
Confidence 357788999999999999999999999999876
No 4
>d2g5ca1 a.100.1.12 (A:201-310) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}
Probab=38.01 E-value=15 Score=25.92 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHhcCC
Q psy17613 4 QRRVQVVTALQELNTSVTVVLNLLSN 29 (287)
Q Consensus 4 ~kr~~V~~~l~~l~~~~~~i~~~l~~ 29 (287)
.=|++|++.|++++++.+.+.+.+++
T Consensus 65 ~N~~~i~~~l~~~~~~L~~~~~~l~~ 90 (110)
T d2g5ca1 65 ENKENVMKAIEGFEKSLNHLKELIVR 90 (110)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44789999999999999999888854
No 5
>d2f1ka1 a.100.1.12 (A:166-279) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=32.88 E-value=19 Score=25.50 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHhcCC
Q psy17613 4 QRRVQVVTALQELNTSVTVVLNLLSN 29 (287)
Q Consensus 4 ~kr~~V~~~l~~l~~~~~~i~~~l~~ 29 (287)
.=|.+|++.|+.++++.+.+.+.+++
T Consensus 67 ~N~~~i~~~l~~~~~~L~~l~~~l~~ 92 (114)
T d2f1ka1 67 YNQRALLKSLQDYRQHLDQLITLISN 92 (114)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34679999999999999999999865
No 6
>d1jmxa1 a.3.1.7 (A:2-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}
Probab=29.72 E-value=13 Score=25.06 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=15.4
Q ss_pred hHHHHHHHHHhhcCCCc
Q psy17613 41 DQKTLCTYLTKEFDTQL 57 (287)
Q Consensus 41 d~~~~~~~L~~~~~~~~ 57 (287)
|-.++++||.++||..|
T Consensus 55 e~~~Iv~YLa~~yG~~p 71 (84)
T d1jmxa1 55 DRRTLVKYLADKQGLAP 71 (84)
T ss_dssp HHHHHHHHHHHHTCCCG
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 66799999999999988
No 7
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=26.75 E-value=16 Score=24.62 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=15.3
Q ss_pred hHHHHHHHHHhhcCCCc
Q psy17613 41 DQKTLCTYLTKEFDTQL 57 (287)
Q Consensus 41 d~~~~~~~L~~~~~~~~ 57 (287)
|-..+++||.++||+.|
T Consensus 55 e~~~Iv~YLa~~yG~~p 71 (85)
T d1pbya1 55 ERAAIVRHLSDTRGLSL 71 (85)
T ss_dssp HHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 56799999999999988
No 8
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=24.43 E-value=51 Score=20.51 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHhHhHHHHHHhcCCHHHHHH
Q psy17613 2 LKQRRVQVVTALQELNTSVTVVLNLLSNDAVMKQ 35 (287)
Q Consensus 2 ~~~kr~~V~~~l~~l~~~~~~i~~~l~~~~v~~~ 35 (287)
+.+-++..-.+|+.++.+.+.+-.-|+||..+..
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~~~kL~N~~F~~k 35 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERSQRKLASPGFREK 35 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHh
Confidence 4566777888999999999999999999998775
No 9
>d1y74b1 a.194.1.1 (B:83-132) Peripheral plasma membrane protein cask {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.62 E-value=72 Score=19.18 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHH--hHhHHHHHHhcCCHHHHHHhhchhhHH
Q psy17613 4 QRRVQVVTALQEL--NTSVTVVLNLLSNDAVMKQMESVRDQK 43 (287)
Q Consensus 4 ~kr~~V~~~l~~l--~~~~~~i~~~l~~~~v~~~l~~~rd~~ 43 (287)
++=.+|++.|+.. ..+++.+..+|+.|.++.-|.. -|..
T Consensus 3 q~A~eVle~L~~~~~~~e~~EL~~lL~~PH~~aLL~a-HD~V 43 (50)
T d1y74b1 3 QRAKEVLEEISCYPENNDAKELKRILTQPHFMALLQT-HDVV 43 (50)
T ss_dssp HHHHHHHHHHHTCSSCHHHHHHHHHHHSHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHhcccCChHHHHHHHHHhCHHHHHHHHH-HHHH
Confidence 4556888888864 3468889999999998777665 4533
No 10
>d1p0za_ d.110.6.1 (A:) Sensor kinase CitA {Klebsiella pneumoniae [TaxId: 573]}
Probab=20.24 E-value=67 Score=22.39 Aligned_cols=35 Identities=6% Similarity=0.156 Sum_probs=22.2
Q ss_pred HhHhHHHHHHhc-CCHHHHHHhhchhhHHHHHHHHHh
Q psy17613 16 LNTSVTVVLNLL-SNDAVMKQMESVRDQKTLCTYLTK 51 (287)
Q Consensus 16 l~~~~~~i~~~l-~~~~v~~~l~~~rd~~~~~~~L~~ 51 (287)
+.+.+..+-..+ .+|+|.+.|++ +|...+.+++++
T Consensus 8 ~~~ral~~A~~lA~~P~v~~al~~-~d~~~l~~~~~~ 43 (131)
T d1p0za_ 8 VGQRALIQAMQISAMPELVEAVQK-RDLARIKALIDP 43 (131)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHhc-CCHHHHHHHHHH
Confidence 334444444444 78999999986 666666666643
Done!