RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17613
(287 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 4e-04
Identities = 42/263 (15%), Positives = 62/263 (23%), Gaps = 88/263 (33%)
Query: 46 CTYLTKEFDTQLSNCAVYGTMCVGAEASQQ---------YVTKRYLPSFS---CPVSTIM 93
+ L ++F+ L E + YV+ PS V +
Sbjct: 30 ASQLQEQFNKILP--EPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC 87
Query: 94 IRRFFNNYPLLSN-----CAVYGTMCVGAEASQQYVTKRYLN-------PTTPPEPIDTA 141
+ F N Y L N A + + K Y+ P +
Sbjct: 88 LTEFENCY-LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN---S 143
Query: 142 ALGRYAILGTCINPNILYFWYKWLDKAFTGKSAQIVVKKVLIDQFCMTPPLYAIFYTSMS 201
AL G + L AIF
Sbjct: 144 AL---------------------FRAVGEGNA-----------------QLVAIF----- 160
Query: 202 LMEG----KDDIFAELREKFL--PTFQTSCIFWLPAQTINFFFLPPAARVIFVGTCSFVW 255
G DD F ELR+ + I + A +F
Sbjct: 161 ---GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG----- 212
Query: 256 INILCWLKRSDLNAESS-LAVAP 277
+NIL WL+ + L P
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIP 235
Score = 33.1 bits (75), Expect = 0.11
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 13/43 (30%)
Query: 185 QFCMTPPLYAIFYTSMSLMEGKDDIFAELREKFLPTFQTSCIF 227
QF T P A+ + F +L+ K L F
Sbjct: 1730 QF--TQP--ALTLMEKA-------AFEDLKSKGL--IPADATF 1759
Score = 27.3 bits (60), Expect = 8.2
Identities = 23/124 (18%), Positives = 37/124 (29%), Gaps = 47/124 (37%)
Query: 11 TALQELNTSVTVVLNLLSNDAV--------MKQMESVRDQKTLCTYLTKEFDTQLSNCAV 62
AL S+ V+++ V Q+ RD+ Y A+
Sbjct: 1768 AAL----ASLADVMSI--ESLVEVVFYRGMTMQVAVPRDELGRSNY---------GMIAI 1812
Query: 63 Y-GTMCVG-AEASQQYVTKRYLPSFSCPVSTIMIRRFFNNYPLLSNCAVYGTMCVGAEAS 120
G + ++ + QYV +R V + NY N +
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGWLVEIV-------NY----NVE-----------N 1850
Query: 121 QQYV 124
QQYV
Sbjct: 1851 QQYV 1854
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 34.1 bits (78), Expect = 0.038
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 177 VVKKVLIDQFCMTPPLYAIFYTSMSLMEGKDDIFAELREKFLP-TFQTSCIF---WLPAQ 232
VK+ +F + S+ E K + + + +P T+ +S F +L +
Sbjct: 105 TVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSL 164
Query: 233 TINFFFLPPAARVIFVG 249
PP +V+ +G
Sbjct: 165 AQAGLTAPPRDKVVILG 181
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.042
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 9/30 (30%)
Query: 262 LKRSDLNAESSLAV-----APGVAVKEEKE 286
LK+ L ++SL + AP +A+K E
Sbjct: 22 LKK--L--QASLKLYADDSAPALAIKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.062
Identities = 40/293 (13%), Positives = 82/293 (27%), Gaps = 99/293 (33%)
Query: 6 RVQVV----TALQEL--NTSVTV-----------VLNLLSNDAVMKQME------SVRD- 41
R+Q AL EL +V + L++ + V +M+ ++++
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 42 ---------QKTLCTYLTKEFDTQLSNCAVYGTMCVGAE-------ASQQYV-------- 77
+ L + + ++ + + + S+ Y
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 78 --TKRYLPSF--SCPVSTIMIRRFFNNYPLLSNCAVYGTMCVGAEASQQYVTK------- 126
+ +F SC ++ RF LS + + +T
Sbjct: 253 VQNAKAWNAFNLSCK--ILLTTRFKQVTDFLSAATTTH---ISLDHHSMTLTPDEVKSLL 307
Query: 127 -RYLNPTT---PPEPIDTAALGRYAILGTCI--NPNILYFWYKWLDKAFTGKSAQIVVKK 180
+YL+ P E + T R +I+ I W W + K
Sbjct: 308 LKYLDCRPQDLPREVLTTNPR-RLSIIAESIRDGLAT---WDNWK---------HVNCDK 354
Query: 181 V--LIDQF--CMTPPLYAIFYTSMSLMEGKD-DIFAELREKFLPTFQTSCIFW 228
+ +I+ + P Y + +S+ I PT + W
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFP-PSAHI---------PT-ILLSLIW 396
Score = 27.1 bits (59), Expect = 8.3
Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 26/121 (21%)
Query: 121 QQY-VTKRYLNPTTPPEPIDT---AALGRYAILGTCINP------NILYFWYKWLDK--- 167
Y + K + + P +D + +G + L +P +++ +++L++
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHH--LKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 168 -AFTGKSAQIVVKKVLIDQFCMTPPLYAIFYTS-MSLMEGKDDIFAELREKFLPTFQTSC 225
T +A + L FY + + K + FLP + +
Sbjct: 509 HDSTAWNASGSILNTLQQ---------LKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 226 I 226
I
Sbjct: 560 I 560
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 26.5 bits (58), Expect = 8.6
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 131 PTTPPEPID-TAALGRYAILGTCI----NPNILYFWYK 163
P+ P + + +G A+L TC +P Y W+K
Sbjct: 105 PSKPTISVPSSVTIGNRAVL-TCSEHDGSPPSEYSWFK 141
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.135 0.419
Gapped
Lambda K H
0.267 0.0678 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,298,363
Number of extensions: 245581
Number of successful extensions: 458
Number of sequences better than 10.0: 1
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 10
Length of query: 287
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 194
Effective length of database: 4,105,140
Effective search space: 796397160
Effective search space used: 796397160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.8 bits)