RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17613
         (287 letters)



>d1qkia2 d.81.1.5 (A:200-434,A:450-511) Glucose 6-phosphate
           dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
          Length = 297

 Score = 32.7 bits (74), Expect = 0.043
 Identities = 19/136 (13%), Positives = 33/136 (24%), Gaps = 6/136 (4%)

Query: 37  ESVRDQKTLCTYLTKEFDTQLSNC-AVYGTMCVGAEASQQYVTKRYLPSFSCPVSTIMIR 95
           + VRD+K        E            G      EA++ Y+    +P  S   +   + 
Sbjct: 83  DDVRDEKVKVLKCISEVQANNVVLGQYVGNPDGEGEATKGYLDDPTVPRGSTTATFAAVV 142

Query: 96  RFFNNYPLLSNCAVYGTMCVGAEASQQYVTKRYLNPTTPPEPIDTAALGRYAILGTCINP 155
            +  N                    +  V  ++         I      R   L   + P
Sbjct: 143 LYVENER-WDGVPFILRCGKALNERKAEVRLQF---HDVAGDIFHQQCKR-NELVIRVQP 197

Query: 156 NILYFWYKWLDKAFTG 171
           N   +      K    
Sbjct: 198 NEAVYTKMMTKKPGMF 213


>d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 98

 Score = 24.9 bits (54), Expect = 5.8
 Identities = 10/41 (24%), Positives = 14/41 (34%)

Query: 14 QELNTSVTVVLNLLSNDAVMKQMESVRDQKTLCTYLTKEFD 54
           + N +   + N   ND      E+  D   L  YL    D
Sbjct: 30 ADFNATFYSMANKHFNDYDFVSAENADDDFKLSIYLPSAMD 70


>d1thqa_ f.4.1.2 (A:) Outer membrane enzyme PagP {Escherichia coli
           [TaxId: 562]}
          Length = 157

 Score = 25.2 bits (55), Expect = 7.6
 Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 5/39 (12%)

Query: 131 PTTPPEPIDTAALGRYAILGTCI-----NPNILYFWYKW 164
           P     P+ +   G      T I     N N+ + W ++
Sbjct: 115 PLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRF 153


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0575    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,062,987
Number of extensions: 49100
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 5
Length of query: 287
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,254,276
Effective search space: 254618028
Effective search space used: 254618028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.2 bits)