BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17615
(459 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a
Subunit C- Terminal Domain, In Complex With A Sorting
Peptide From Tgn38
Length = 261
Score = 363 bits (931), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/277 (62%), Positives = 208/277 (75%), Gaps = 30/277 (10%)
Query: 187 VPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMN 246
+PWRR GVKYTNNEAYFDV+EE+DAIIDK+GST+F+EIQG ID CIKLSGMPDL+LSFMN
Sbjct: 8 IPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMN 67
Query: 247 PRLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINHNINFKQ 306
PRL DDVSFHPC+RFKRWE+ER+LSFIPPDGNFRL+SY +++QNLVAIP+Y+ HNI+FK+
Sbjct: 68 PRLLDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHNISFKE 127
Query: 307 N----KIDMTIGPKQTIGRTIENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDLH 362
N + D+TIGPKQ +G+TIE I + + MP VVLN L QG YTFDP+ K
Sbjct: 128 NSSCGRFDITIGPKQNMGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTK------- 180
Query: 363 STERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRGSFTVQSGQENHNFNLTINVKFT 422
+L WDVG+I + KLP+++G +QSG N +N++F
Sbjct: 181 ------------------VLAWDVGKITPQ-KLPSLKGLVNLQSGAPKPEENPNLNIQFK 221
Query: 423 INQLAISGLKVNRLDMYGEKYKPFKGVKYITTGGTFQ 459
I QLAISGLKVNRLDMYGEKYKPFKGVKYIT G FQ
Sbjct: 222 IQQLAISGLKVNRLDMYGEKYKPFKGVKYITKAGKFQ 258
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core
pdb|1W63|N Chain N, Ap1 Clathrin Adaptor Core
pdb|1W63|O Chain O, Ap1 Clathrin Adaptor Core
pdb|1W63|P Chain P, Ap1 Clathrin Adaptor Core
pdb|1W63|R Chain R, Ap1 Clathrin Adaptor Core
pdb|1W63|V Chain V, Ap1 Clathrin Adaptor Core
Length = 423
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 126/475 (26%), Positives = 211/475 (44%), Gaps = 79/475 (16%)
Query: 4 SLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKG 63
++++++ +++ ++++ + S ++F + + PI+ + +
Sbjct: 5 AVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNN 64
Query: 64 VFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPL 123
++ VA + V FL +VV F +YF + E ++DN+V++YE+LDE++D G+P
Sbjct: 65 LYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQ 124
Query: 124 ATESNVLKELIKPPNILRTIANTMTGGSNVSSILPSGQLSSVPWRRTGGSNVSSILPSGQ 183
T+S +L+E I G + + P P+
Sbjct: 125 TTDSKILQEFI------------TQEGHKLETGAPRP-------------------PATV 153
Query: 184 LSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLS 243
++V WR G+KY NE + DVIE V+ ++ G+ + SEI G I + LSGMP+L L
Sbjct: 154 TNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLG 213
Query: 244 FMNPRLFD-------------DVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINT-- 288
+ LFD DV FH CVR R+E +R +SFIPPDG F LMSY +NT
Sbjct: 214 LNDKVLFDNTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHV 273
Query: 289 QNLVAIPLYINHNINFKQNKIDMTIGPKQTIGR--TIENIVIEIPMPSVVLNCTLLQNQG 346
+ L+ I I + ++I+ + K R T N+ I IP+P+ + G
Sbjct: 274 KPLIWIESVIEKH---SHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVG 330
Query: 347 KYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRGSFTVQS 406
+ P + W + S F K+ L +R F + S
Sbjct: 331 SVKWVPENSEIVWSVKS-----------FPGGKEYL---------------MRAHFGLPS 364
Query: 407 GQ-ENHNFNLTINVKFTINQLAISGLKVNRLDMYGEK-YKPFKGVKYITTGGTFQ 459
+ E+ I+VKF I SG++V L + + Y+ V+YIT G +Q
Sbjct: 365 VEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQAIPWVRYITQNGDYQ 419
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Non-Canonical Internalization Peptide
Vedyeqglsg
pdb|2VGL|M Chain M, Ap2 Clathrin Adaptor Core
pdb|2JKR|M Chain M, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|U Chain U, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|M Chain M, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|U Chain U, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 435
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/387 (26%), Positives = 170/387 (43%), Gaps = 58/387 (14%)
Query: 1 MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVY 60
MI LFI N ++++ + ++ I R+ D F A+ + P+ V
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAF-RVNVIHARQQVRSPVTNIARTSFFHVK 59
Query: 61 RKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNG 120
R ++ AVT V V EFL ++ YF SE +K+N+V++YE+LDE+LD G
Sbjct: 60 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 119
Query: 121 FPLATESNVLKELIKPPNILRTIANTMTGGSNVSSILPSGQLSSVPWRRTGGSNVSSILP 180
+P +E+ LK I I ++ T S ++S + +GQ+
Sbjct: 120 YPQNSETGALKTFITQQGI-KSQHQTKEEQSQITSQV-TGQIG----------------- 160
Query: 181 SGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDL 240
WRR G+KY NE + DV+E V+ ++ G + + + G + LSGMP+
Sbjct: 161 --------WRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPEC 212
Query: 241 TLSFMNPRL----------------------FDDVSFHPCVRFKRWEAERILSFIPPDGN 278
MN ++ DD +FH CVR ++++ER +SFIPPDG
Sbjct: 213 KFG-MNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGE 271
Query: 279 FRLMSYHINTQNLV----AIPLYINHNINFKQNKIDMTIGPKQTIGRTIENIVIEIPMPS 334
F LM Y T++++ IPL + + ++ + I + I + IP P
Sbjct: 272 FELMRYR-TTKDIILPFRVIPLV--REVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPL 328
Query: 335 VVLNCTLLQNQGKYTFDPIKKILTWDL 361
++ +GK + + + W +
Sbjct: 329 NTSGVQVICMKGKAKYKASENAIVWKI 355
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 446
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/397 (25%), Positives = 170/397 (42%), Gaps = 67/397 (16%)
Query: 1 MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVY 60
MI LFI N ++++ + ++ I R+ D F A+ + P+ V
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAF-RVNVIHARQQVRSPVTNIARTSFFHVK 59
Query: 61 RKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNG 120
R ++ AVT V V EFL ++ YF SE +K+N+V++YE+LDE+LD G
Sbjct: 60 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 119
Query: 121 FPLATESNVLKELIKPPNILRTIANTMTGGSNVSSILPSGQLSSVPWRRTGGSNVSSILP 180
+P +E+ LK I I ++ T S ++S +
Sbjct: 120 YPQNSETGALKTFITQQGI-KSQHQTKEEQSQITSQV----------------------- 155
Query: 181 SGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMP-- 238
+GQ+ WRR G+KY NE + DV+E V+ ++ G + + + G + LSGMP
Sbjct: 156 TGQIG---WRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPEC 212
Query: 239 ------------------DLTLSFMNPRLF------------DDVSFHPCVRFKRWEAER 268
D T M +L DD +FH CVR ++++ER
Sbjct: 213 KFGMNDKIVIEKQGKGTADETSKSMEQKLISEEDLGKQSIAIDDCTFHQCVRLSKFDSER 272
Query: 269 ILSFIPPDGNFRLMSYHINTQNLV----AIPLYINHNINFKQNKIDMTIGPKQTIGRTIE 324
+SFIPPDG F LM Y T++++ IPL + + ++ + I +
Sbjct: 273 SISFIPPDGEFELMRYR-TTKDIILPFRVIPLV--REVGRTKLEVKVVIKSNFKPSLLAQ 329
Query: 325 NIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDL 361
I + IP P ++ +GK + + + W +
Sbjct: 330 KIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKI 366
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
pdb|4EN2|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
Length = 266
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 132/290 (45%), Gaps = 48/290 (16%)
Query: 189 WRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNPR 248
WR G+KY NE + DVIE V+ ++ G+ + SEI G I + LSGMP+L L +
Sbjct: 2 WRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKV 61
Query: 249 LFD-------------DVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINT--QNLVA 293
LFD DV FH CVR R+E +R +SFIPPDG F LMSY +NT + L+
Sbjct: 62 LFDNTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIW 121
Query: 294 IPLYINHNINFKQNKIDMTIGPKQTIGR--TIENIVIEIPMPSVVLNCTLLQNQGKYTFD 351
I I + ++I+ + K R T N+ I IP+P+ + G +
Sbjct: 122 IESVIEKH---SHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWV 178
Query: 352 PIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRGSFTVQSGQ-EN 410
P + W + S F K+ L +R F + S + E+
Sbjct: 179 PENSEIVWSVKS-----------FPGGKEYL---------------MRAHFGLPSVEAED 212
Query: 411 HNFNLTINVKFTINQLAISGLKVNRLDMYGEK-YKPFKGVKYITTGGTFQ 459
I+VKF I SG++V L + + Y+ V+YIT G +Q
Sbjct: 213 KEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQ 262
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
pdb|4EMZ|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
Length = 266
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 129/290 (44%), Gaps = 48/290 (16%)
Query: 189 WRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNPR 248
WR G+KY NE + DVIE V+ ++ G+ + SEI G I + LSG P+L L +
Sbjct: 2 WRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKXRVFLSGXPELRLGLNDKV 61
Query: 249 LFD-------------DVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINT--QNLVA 293
LFD DV FH CVR R+E +R +SFIPPDG F L SY +NT + L+
Sbjct: 62 LFDNTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELXSYRLNTHVKPLIW 121
Query: 294 IPLYINHNINFKQNKIDMTIGPKQTIGR--TIENIVIEIPMPSVVLNCTLLQNQGKYTFD 351
I I + ++I+ + K R T N+ I IP+P+ + G +
Sbjct: 122 IESVIEKH---SHSRIEYXVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWV 178
Query: 352 PIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRGSFTVQSGQ-EN 410
P + W + S F K+ L R F + S + E+
Sbjct: 179 PENSEIVWSVKS-----------FPGGKEYLX---------------RAHFGLPSVEAED 212
Query: 411 HNFNLTINVKFTINQLAISGLKVNRLDMYGEK-YKPFKGVKYITTGGTFQ 459
I+VKF I SG++V L + + Y+ V+YIT G +Q
Sbjct: 213 KEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQ 262
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Gabaa Receptor-Gamma2 Subunit-Derived
Internalization Peptide Deeygyecl
pdb|3H85|A Chain A, Molecular Basis For The Association Of Pipki Gamma-P90
With The Clathrin Adaptor Ap-2
Length = 299
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 30/210 (14%)
Query: 178 ILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGM 237
++P G + WRR G+KY NE + DV+E V+ ++ G + + + G + LSGM
Sbjct: 14 LVPRGSHMQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGM 73
Query: 238 PDLTLSFMNPRL----------------------FDDVSFHPCVRFKRWEAERILSFIPP 275
P+ MN ++ DD +FH CVR ++++ER +SFIPP
Sbjct: 74 PECKFG-MNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPP 132
Query: 276 DGNFRLMSYHINTQNLV----AIPLYINHNINFKQNKIDMTIGPKQTIGRTIENIVIEIP 331
DG F LM Y T++++ IPL + + ++ + I + I + IP
Sbjct: 133 DGEFELMRYR-TTKDIILPFRVIPLV--REVGRTKLEVKVVIKSNFKPSLLAQKIEVRIP 189
Query: 332 MPSVVLNCTLLQNQGKYTFDPIKKILTWDL 361
P ++ +GK + + + W +
Sbjct: 190 TPLNTSGVQVICMKGKAKYKASENAIVWKI 219
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Egfr Internalization Peptide Fyralm
Length = 321
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 30/201 (14%)
Query: 187 VPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMN 246
+ WRR G+KY NE + DV+E V+ ++ G + + + G + LSGMP+ MN
Sbjct: 45 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MN 103
Query: 247 PRL----------------------FDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSY 284
++ DD +FH CVR ++++ER +SFIPPDG F LM Y
Sbjct: 104 DKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRY 163
Query: 285 HINTQNLV----AIPLYINHNINFKQNKIDMTIGPKQTIGRTIENIVIEIPMPSVVLNCT 340
T++++ IPL + + ++ + I + I + IP P
Sbjct: 164 R-TTKDIILPFRVIPLV--REVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQ 220
Query: 341 LLQNQGKYTFDPIKKILTWDL 361
++ +GK + + + W +
Sbjct: 221 VICMKGKAKYKASENAIVWKI 241
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor,
Complexed With Egfr Internalization Peptide Fyralm At
2.5 A Resolution
Length = 314
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 30/201 (14%)
Query: 187 VPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMN 246
+ WRR G+KY NE + DV+E V+ ++ G + + + G + LSGMP+ MN
Sbjct: 38 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MN 96
Query: 247 PRL----------------------FDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSY 284
++ DD +FH CVR ++++ER +SFIPPDG F LM Y
Sbjct: 97 DKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRY 156
Query: 285 HINTQNLV----AIPLYINHNINFKQNKIDMTIGPKQTIGRTIENIVIEIPMPSVVLNCT 340
T++++ IPL + + ++ + I + I + IP P
Sbjct: 157 R-TTKDIILPFRVIPLV--REVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQ 213
Query: 341 LLQNQGKYTFDPIKKILTWDL 361
++ +GK + + + W +
Sbjct: 214 VICMKGKAKYKASENAIVWKI 234
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Tgn38 Internalization Peptide Dyqrln
pdb|1HES|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With P-Selectin Internalization Peptide
Shlgtygvftnaa
Length = 285
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 30/202 (14%)
Query: 187 VPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMN 246
+ WRR G+KY NE + DV+E V+ ++ G + + + G + LSGMP+ MN
Sbjct: 9 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MN 67
Query: 247 PRL----------------------FDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSY 284
++ DD +FH CVR ++++ER +SFIPPDG F LM Y
Sbjct: 68 DKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRY 127
Query: 285 HINTQNLV----AIPLYINHNINFKQNKIDMTIGPKQTIGRTIENIVIEIPMPSVVLNCT 340
T++++ IPL + + ++ + I + I + IP P
Sbjct: 128 R-TTKDIILPFRVIPLV--REVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQ 184
Query: 341 LLQNQGKYTFDPIKKILTWDLH 362
++ +GK + + + W +
Sbjct: 185 VICMKGKAKYKASENAIVWKIK 206
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Ctla-4 Internalization Peptide
Ttgvyvkmppt
Length = 288
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 30/196 (15%)
Query: 193 GVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNPRL--- 249
G+KY NE + DV+E V+ ++ G + + + G + LSGMP+ MN ++
Sbjct: 18 GIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIE 76
Query: 250 -------------------FDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQN 290
DD +FH CVR ++++ER +SFIPPDG F LM Y T++
Sbjct: 77 KQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR-TTKD 135
Query: 291 LV----AIPLYINHNINFKQNKIDMTIGPKQTIGRTIENIVIEIPMPSVVLNCTLLQNQG 346
++ IPL + + ++ + I + I + IP P ++ +G
Sbjct: 136 IILPFRVIPLV--REVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKG 193
Query: 347 KYTFDPIKKILTWDLH 362
K + + + W +
Sbjct: 194 KAKYKASENAIVWKIK 209
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|B Chain B, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|C Chain C, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|D Chain D, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|E Chain E, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|F Chain F, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
Length = 385
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 30/195 (15%)
Query: 193 GVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNPRL--- 249
G + NE + DV+E V+ ++ G + + + G + LSGMP+ MN ++
Sbjct: 115 GSGGSRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIE 173
Query: 250 -------------------FDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQN 290
DD +FH CVR ++++ER +SFIPPDG F LM Y T++
Sbjct: 174 KQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR-TTKD 232
Query: 291 LV----AIPLYINHNINFKQNKIDMTIGPKQTIGRTIENIVIEIPMPSVVLNCTLLQNQG 346
++ IPL + + ++ + I + I + IP P ++ +G
Sbjct: 233 IILPFRVIPLV--REVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKG 290
Query: 347 KYTFDPIKKILTWDL 361
K + + + W +
Sbjct: 291 KAKYKASENAIVWKI 305
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4
Su Terminal Domain, In Complex With A Sorting Peptide
From The Precursor Protein (App)
Length = 301
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 18/204 (8%)
Query: 176 SSILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLS 235
S + PS S + NE + DV+E + +I GS + ++QG I L
Sbjct: 10 SKVAPSSAASRPVLSSRSDQSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLP 69
Query: 236 GMPDLTLSFM-------------NPRL-FDDVSFHPCVRFKRWEAERILSFIPPDGNFRL 281
++ + P + D+VSFH V +E+ RIL PP G +
Sbjct: 70 SGSEMRIGLTEEFSVGKSELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTV 129
Query: 282 MSYHINTQNLVAIPLYINHNINFKQNKIDMTIGPK---QTIGRTIE-NIVIEIPMPSVVL 337
M Y ++ +P + ++ + + + + K + ++ N+ + +P+P V+
Sbjct: 130 MRYQLSDDLPSPLPFRLFPSVQWDRGSGRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVV 189
Query: 338 NCTLLQNQGKYTFDPIKKILTWDL 361
+ + + + + + L WDL
Sbjct: 190 SLSQELSSPEQKAELAEGALRWDL 213
>pdb|2VGL|S Chain S, Ap2 Clathrin Adaptor Core
pdb|2JKR|I Chain I, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|S Chain S, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|I Chain I, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|S Chain S, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2XA7|S Chain S, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 142
Score = 32.3 bits (72), Expect = 0.58, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 59 VYRK--GVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEM 116
+YR+ G++F L +E + V ++YF++ E L N+ VY ++DEM
Sbjct: 58 IYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEM 117
Query: 117 LDNG-FPLATESNVLKELI 134
G +++ VLK+L+
Sbjct: 118 FLAGEIRETSQTKVLKQLL 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,257,556
Number of Sequences: 62578
Number of extensions: 614270
Number of successful extensions: 1415
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1382
Number of HSP's gapped (non-prelim): 18
length of query: 459
length of database: 14,973,337
effective HSP length: 102
effective length of query: 357
effective length of database: 8,590,381
effective search space: 3066766017
effective search space used: 3066766017
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)