Query psy17615
Match_columns 459
No_of_seqs 171 out of 1321
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 18:35:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0938|consensus 100.0 2.4E-96 5E-101 690.8 37.5 410 1-459 1-444 (446)
2 KOG2740|consensus 100.0 4E-85 8.7E-90 621.1 34.1 411 1-459 1-415 (418)
3 KOG0937|consensus 100.0 1.1E-78 2.3E-83 597.7 38.7 398 2-459 1-421 (424)
4 PF00928 Adap_comp_sub: Adapto 100.0 4.8E-57 1E-61 439.1 27.1 245 187-459 1-259 (262)
5 KOG2635|consensus 100.0 2.5E-43 5.4E-48 342.9 34.4 401 2-439 3-490 (512)
6 KOG2677|consensus 100.0 3.3E-36 7.2E-41 303.3 4.2 258 193-454 581-884 (922)
7 PF01217 Clat_adaptor_s: Clath 100.0 1.4E-27 3E-32 210.4 16.3 135 1-137 1-138 (141)
8 COG5030 APS2 Clathrin adaptor 99.9 8.3E-22 1.8E-26 164.3 12.8 132 1-134 1-135 (152)
9 KOG0934|consensus 99.8 8.8E-21 1.9E-25 158.1 7.1 127 1-129 1-130 (145)
10 KOG0935|consensus 99.8 3.3E-19 7.2E-24 144.7 10.2 133 1-135 1-137 (143)
11 KOG0936|consensus 99.8 2E-18 4.3E-23 146.0 11.0 136 1-138 1-145 (182)
12 KOG3343|consensus 99.8 5.6E-18 1.2E-22 144.7 12.0 141 2-143 9-152 (175)
13 COG5541 RET3 Vesicle coat comp 99.3 4.5E-12 9.8E-17 108.1 8.9 136 2-138 8-154 (187)
14 PF10291 muHD: Muniscin C-term 99.1 1E-08 2.2E-13 99.0 21.2 225 201-458 3-254 (257)
15 PF15001 AP-5_subunit_s1: AP-5 96.8 0.043 9.3E-07 50.1 13.8 80 54-133 104-184 (189)
16 PF03164 Mon1: Trafficking pro 95.8 0.068 1.5E-06 55.5 10.9 89 3-94 12-103 (415)
17 KOG0997|consensus 94.0 0.26 5.6E-06 50.8 8.7 100 3-108 118-226 (523)
18 PF08923 MAPKK1_Int: Mitogen-a 92.7 2.4 5.1E-05 36.0 11.3 90 2-92 17-114 (119)
19 COG5122 TRS23 Transport protei 91.7 2.4 5.3E-05 35.1 9.6 90 2-95 3-107 (134)
20 KOG0781|consensus 90.2 3.9 8.5E-05 42.7 11.8 113 1-115 1-116 (587)
21 PF13774 Longin: Regulated-SNA 89.3 2.6 5.7E-05 33.0 8.0 49 47-95 17-65 (83)
22 PF04099 Sybindin: Sybindin-li 88.8 6 0.00013 34.6 10.6 92 2-94 1-115 (142)
23 KOG0859|consensus 80.1 49 0.0011 30.5 12.3 87 8-97 7-94 (217)
24 KOG3369|consensus 79.0 22 0.00048 32.0 9.5 45 48-94 125-170 (199)
25 PF03504 Chlam_OMP6: Chlamydia 63.7 22 0.00047 27.9 5.3 53 308-394 33-85 (95)
26 PF09201 SRX: SRX; InterPro: 59.9 98 0.0021 26.9 9.1 72 1-72 1-86 (148)
27 TIGR01451 B_ant_repeat conserv 51.1 39 0.00085 24.0 4.7 32 306-337 11-42 (53)
28 KOG0862|consensus 49.6 63 0.0014 30.2 6.9 48 49-96 54-101 (216)
29 KOG0861|consensus 34.4 2.7E+02 0.0059 25.3 8.1 122 2-126 3-137 (198)
30 KOG0647|consensus 28.7 2E+02 0.0044 28.5 6.9 101 208-315 203-314 (347)
31 PF01345 DUF11: Domain of unkn 26.5 1.8E+02 0.0038 21.9 5.2 32 306-337 40-71 (76)
32 PF00235 Profilin: Profilin; 25.2 3.9E+02 0.0085 22.0 8.3 35 56-90 87-121 (121)
33 PF10633 NPCBM_assoc: NPCBM-as 24.7 1E+02 0.0022 23.4 3.6 31 307-337 5-35 (78)
34 PF07151 DUF1391: Protein of u 23.7 82 0.0018 21.5 2.3 18 271-288 15-32 (49)
35 KOG2265|consensus 21.8 1.8E+02 0.0039 26.4 4.8 16 321-336 25-40 (179)
36 cd08339 DED_DEDD-like Death Ef 21.5 1.3E+02 0.0028 23.9 3.4 36 82-124 4-39 (97)
37 PRK09750 hypothetical protein; 20.2 71 0.0015 23.4 1.6 13 440-452 12-24 (64)
No 1
>KOG0938|consensus
Probab=100.00 E-value=2.4e-96 Score=690.82 Aligned_cols=410 Identities=29% Similarity=0.549 Sum_probs=364.1
Q ss_pred CeeEEEEEcCCCCEEEEeccCCCcccchHHHHHHHhhccCCCCCCCCeEEcCCEEEEEEEeCcEEEEEEEcCCCChHHHH
Q psy17615 1 MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPLFVI 80 (459)
Q Consensus 1 MI~~i~Iln~~G~~l~~r~y~~~~~~~~~~~f~~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~~~ 80 (459)
||+++||+|.+|++|+.|.||++..++..|+|+-++.+. ....+|+..++++.|+|.+.++||+|+++.+|.|.+.++
T Consensus 1 misglfi~n~rGevlink~fr~dlkrs~~diFRv~vi~n--~d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~v~ 78 (446)
T KOG0938|consen 1 MISGLFIYNLRGEVLINKTFRDDLKRSIVDIFRVQVINN--LDVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAAVF 78 (446)
T ss_pred CcceEEEEeccCcEEEehhhhhhhhhhHHHHHHHhhhhc--cccCCCeeEecceeEEEEeeccEEEEEEecCCCchhhHH
Confidence 999999999999999999999999999999999999884 356789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCHHHHhhhHHHHHHHHHHHhhCCcccccChHHHHhhcCCCchhhhhhccccCCCCcccCCCCC
Q psy17615 81 EFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPLATESNVLKELIKPPNILRTIANTMTGGSNVSSILPSG 160 (459)
Q Consensus 81 ~~L~~~~~~l~~y~~~l~e~~i~~n~~~i~~lldE~id~G~p~~t~~~~l~~~i~~~s~~~~~~~~~~~~~~~~~~~~~~ 160 (459)
|||..+.+++..|||+++|+.|++||.+|||+||||+|+||||+|++++|+..+..+..-++ |.....+.-|+
T Consensus 79 eFl~kl~avm~aYfgk~~Eeaiknnf~lI~ElLDemld~G~pqnte~~al~~~is~~~Vrs~------g~~ls~k~s~~- 151 (446)
T KOG0938|consen 79 EFLYKLDAVMNAYFGKDREEAIKNNFVLIYELLDEMLDFGIPQNTEPNALKAQISQKGVRSM------GGVLSSKSSPT- 151 (446)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhceEeHHHHHHHHHhcCCCccCChhHHHhhhhhhhhhcc------ccccCCcCCCC-
Confidence 99999999999999999999999999999999999999999999999999999988655321 10000000110
Q ss_pred CCCCCccccCCCCCccccCCCCCccccccccCCcccccceeEEEEEEEEEEEEeCCCCEEEEEEEEEEEEEEEEcCCCce
Q psy17615 161 QLSSVPWRRTGGSNVSSILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDL 240 (459)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~~nEi~vdV~E~v~~~~~~~G~i~~~~i~G~I~~~~~LsG~P~~ 240 (459)
..++.. .+ ......++||+.|++|++||+|+||.|+++.+++++|++++++|.|.|.|+++|||||+|
T Consensus 152 -------sq~~~~--~s---sqv~G~i~WRr~Gi~ykknevfldvvErvNlLmS~~GnVLrs~VsG~V~mk~~LSGmPec 219 (446)
T KOG0938|consen 152 -------SQATEL--RS---SQVTGKIGWRREGIKYKKNEVFLDVVERVNLLMSSDGNVLRSDVSGTVDMKTHLSGMPEC 219 (446)
T ss_pred -------cccccc--cc---cccccccccccccceeccceeEeEehheeeeEEcCCCCEEEeecccEEEEEEeccCCccc
Confidence 000000 00 111236899999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCC---------------------------ccccccccccccccccccccceEEEeCCCCcEEEEEEEecCCCccc
Q psy17615 241 TLSFMNP---------------------------RLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVA 293 (459)
Q Consensus 241 ~l~ln~~---------------------------~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~~ 293 (459)
++|||+. ..|+||+||+||++++|++++.|+|+||||+|+||+||++.+ +.
T Consensus 220 kfGlNDkl~~e~kq~esks~~~n~~~~sks~~g~v~leDc~FHqCV~L~kFn~eh~IsFvPPDGe~ELMkYr~~en--In 297 (446)
T KOG0938|consen 220 KFGLNDKLGMESKQSESKSDFGNKNFPSKSGKGSVLLEDCTFHQCVRLDKFNSEHIISFVPPDGEFELMKYRVTEN--IN 297 (446)
T ss_pred ccccCcccceeeccccccccccccCCCcccCCceEEeeccchheeeccccccccceEEEeCCCCceEeEeeeeccC--cc
Confidence 9999853 258999999999999999999999999999999999999876 78
Q ss_pred cCeEEEEEEEEe-CCEEEEEEeecCCCCC--ccceEEEEEcCCCCceeeEEEeeceeeEecCcccccccccccccccCCC
Q psy17615 294 IPLYINHNINFK-QNKIDMTIGPKQTIGR--TIENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQ 370 (459)
Q Consensus 294 lP~~v~~~~~~~-~~~~e~~l~~~~~~~~--~~~~v~I~ip~P~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 370 (459)
+||+|.|.++.. ..++|+++.+++.|+. .+.+|+++||+|+++..++...+.|+++|.|
T Consensus 298 lPFrV~PiV~el~r~kie~ri~iks~f~~kl~a~~v~~rIPvP~ntv~~n~~v~~Gkaky~p------------------ 359 (446)
T KOG0938|consen 298 LPFRVTPIVTELGRTKIEYRITIKSLFPPKLLAKDVVVRIPVPPNTVKCNISVSNGKAKYVP------------------ 359 (446)
T ss_pred cceEeeeheecccceeEEEEEEEeccCCchhhhcceEEEecCCCccccceeEEecCccccCc------------------
Confidence 999999999875 5799999999999853 5799999999999999999998888887766
Q ss_pred cceeecCCceEEEEEecccCCCCCcceEEEEEEecCCC--CCCCCCcceEEEEEECceecccceEeEEEeec--cCCCcc
Q psy17615 371 GKYTFDPIKKILTWDVGRIDIENKLPNIRGSFTVQSGQ--ENHNFNLTINVKFTINQLAISGLKVNRLDMYG--EKYKPF 446 (459)
Q Consensus 371 g~~~~~~~~~~l~W~I~~~~~~~~~~~l~g~~~~~~~~--~~~~~~~~i~v~F~i~~~t~SGl~V~~l~v~~--~~~~p~ 446 (459)
++++++|+|+++.| .++.++++++++.+.. .+.|..+||+++|++|+++.|||.|++++|.+ .+|+..
T Consensus 360 -------sen~ivWki~kf~G-~tE~tlsAevels~Tt~nkq~WtrPPIsleFeV~MFt~SGL~VrylkV~e~~Sk~~~v 431 (446)
T KOG0938|consen 360 -------SENAIVWKINKFNG-LTESTLSAEVELSDTTQNKQQWTRPPISLEFEVPMFTNSGLVVRYLKVSEKDSKHRAV 431 (446)
T ss_pred -------ccceEEEEecccCC-cccceeEEEEEeccCccccccccCCCceeEEeeeeecCCceEEEEEEEecccCCCceE
Confidence 99999999999999 8899999999998764 34688999999999999999999999999987 379999
Q ss_pred cceEEEeecCCCC
Q psy17615 447 KGVKYITTGGTFQ 459 (459)
Q Consensus 447 k~VrY~t~sg~y~ 459 (459)
|||||+|+||+||
T Consensus 432 kWVrYitkaGsyE 444 (446)
T KOG0938|consen 432 KWVRYITKAGSYE 444 (446)
T ss_pred EEEEEecccceee
Confidence 9999999999997
No 2
>KOG2740|consensus
Probab=100.00 E-value=4e-85 Score=621.08 Aligned_cols=411 Identities=56% Similarity=0.991 Sum_probs=379.6
Q ss_pred CeeEEEEEcCCCCEEEEeccCC-CcccchHHHHHHHhhccCCCCCCCCeEEcCCEEEEEEEeCcEEEEEEEcCCCChHHH
Q psy17615 1 MIHSLFIINSTSDIILEKHWKR-IISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPLFV 79 (459)
Q Consensus 1 MI~~i~Iln~~G~~l~~r~y~~-~~~~~~~~~f~~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~~ 79 (459)
||.+||++|.+|++++++++++ ...|++++-|+.......+..+.+|++..+.++++.+-++++||++++..+..|+++
T Consensus 1 mi~siflidtsg~l~lek~~~g~t~~rsic~~f~e~~~~~~~~e~~ppvi~~p~hylfsv~~~~i~~~~~st~e~pPL~~ 80 (418)
T KOG2740|consen 1 MILSIFLIDTSGDLLLEKHLKGSTVVRSICDYFFEDQSSDDDLEHVPPVISTPHHYLFSVYRDLIFFCAVSTVETPPLMV 80 (418)
T ss_pred CeeEEEEEcCCchhhhhHhhCCceeeeehHHHHHHhhhhccccccCCceecCCceeeeeeeccCcEEEEEEeccCCChhH
Confidence 9999999999999999999994 556888999998888766667788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccCHHHHhhhHHHHHHHHHHHhhCCcccccChHHHHhhcCCCchhhhhhccccCCCCcccCCCC
Q psy17615 80 IEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPLATESNVLKELIKPPNILRTIANTMTGGSNVSSILPS 159 (459)
Q Consensus 80 ~~~L~~~~~~l~~y~~~l~e~~i~~n~~~i~~lldE~id~G~p~~t~~~~l~~~i~~~s~~~~~~~~~~~~~~~~~~~~~ 159 (459)
+||||++++++.+|||+++|.+|++|++.||++||||+|+|+|..|++|.||++|++++++++.+++++|+++++.++|
T Consensus 81 iefL~rv~dv~~eyFg~~s~~~Ik~N~~vv~ell~emiDnGfpl~tE~NiLke~i~pps~l~~~~~svTg~~n~~~~lP- 159 (418)
T KOG2740|consen 81 IEFLHRVVDVLLEYFGGLSESKIKDNVVVVYELLDEMIDNGFPLVTEPNILKELIPPPSFLSKKFNSVTGNSNVSDTLP- 159 (418)
T ss_pred HHHHHHHHHHHHHHhcccCHhHhhcceeeHHHHHHHHHHcCCCcccChhHHHhhcCChHHHHHHHhhhhccccccccCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999988899999888888887
Q ss_pred CCCCCCccccCCCCCccccCCCCCccccccccCCcccccceeEEEEEEEEEEEEeCCCCEEEEEEEEEEEEEEEEcCCCc
Q psy17615 160 GQLSSVPWRRTGGSNVSSILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPD 239 (459)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~~nEi~vdV~E~v~~~~~~~G~i~~~~i~G~I~~~~~LsG~P~ 239 (459)
+++.+.+|||+++.||.+||.||||.|+++|+++++|..+.++|.|.|.|+|+|+|||+
T Consensus 160 ---------------------tg~~s~VPWR~~~~Ky~nNE~yvdvlEeidai~~k~gslv~~eI~g~vd~~~qLsgmPd 218 (418)
T KOG2740|consen 160 ---------------------TGALSNVPWRTAGVKYTNNEAYVDVLEEIDAIVDKKGSLVFGEIQGIVDVCSQLSGMPD 218 (418)
T ss_pred ---------------------CcccccccccccCcccccchhhhhhhheeheEecCCCCEEEEEEEEEEEEEEeecCCCc
Confidence 56777899999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCccccccccccccccccccccceEEEeCCCCcEEEEEEEecCCCccccCeEEEEEEEEeCC---EEEEEEeec
Q psy17615 240 LTLSFMNPRLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINHNINFKQN---KIDMTIGPK 316 (459)
Q Consensus 240 ~~l~ln~~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~~lP~~v~~~~~~~~~---~~e~~l~~~ 316 (459)
+.|.|+++..|+|++|||||+..+|++.++|+|+||||+|+||+||++.+....+|..+++..+..++ ++++.+..+
T Consensus 219 ltlsl~np~~L~dvsfHpcVr~krwe~~~~lsFIPPDGkFrLlsy~v~~~~~v~~pvyv~~~i~l~~~~~~ri~~tvg~~ 298 (418)
T KOG2740|consen 219 LTLSLNNPRLLGDVSFHPCVRYKRWESHSVLSFIPPDGKFRLLSYRVDAQNQVAIPVYVKNSISLDSNHQGRISLTVGPK 298 (418)
T ss_pred eEEEccCccccCCcccccceeecccccccceEEcCCCCcEEEEEEEEehhhccccceEEeeeeccCCCceEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999998778899999999988743 455555555
Q ss_pred CCCCCccceEEEEEcCCCCceeeEEEeeceeeEecCcccccccccccccccCCCcceeecCCceEEEEEecccCCCCCcc
Q psy17615 317 QTIGRTIENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLP 396 (459)
Q Consensus 317 ~~~~~~~~~v~I~ip~P~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~W~I~~~~~~~~~~ 396 (459)
...++.++-+.|++..|..+.+.....++|+..+++ ..+.+-|.++++.. ++.+
T Consensus 299 ~~~gK~ie~itVt~~~pn~i~~~~k~~~~g~~~~~~-------------------------~~k~l~W~~~~i~t-g~lp 352 (418)
T KOG2740|consen 299 KKMGKTIELITVTVQDPNEIAYASKILTHGTFTNSI-------------------------IMKQLTWTFGSIAT-GKLP 352 (418)
T ss_pred ccccceeEeEEEEecCccceeeeecccccceeEeec-------------------------ccceeEEEeecccC-Cccc
Confidence 556678999999999999988877777777776654 78999999999987 8999
Q ss_pred eEEEEEEecCCCCCCCCCcceEEEEEECceecccceEeEEEeeccCCCcccceEEEeecCCCC
Q psy17615 397 NIRGSFTVQSGQENHNFNLTINVKFTINQLAISGLKVNRLDMYGEKYKPFKGVKYITTGGTFQ 459 (459)
Q Consensus 397 ~l~g~~~~~~~~~~~~~~~~i~v~F~i~~~t~SGl~V~~l~v~~~~~~p~k~VrY~t~sg~y~ 459 (459)
.|+|++++.++...+..++.++++|.+.+.++||++|.+|++.+..|+|||||||.|+||.++
T Consensus 353 ~Lkg~~~~e~~~sk~~~l~t~~Lqykiqg~alsglkVe~Ldm~~~~~k~yKGvKy~t~agnfq 415 (418)
T KOG2740|consen 353 VLKGTINLEPGFSKKVDLPTLSLQYKIQGQALSGLKVERLDMYGEPYKPYKGVKYKTKAGNFQ 415 (418)
T ss_pred ccccccccCCCCCccccCcccceeeeeeeeeccceEEEeeeecCCCCccccceEEEEeeeeEE
Confidence 999999999887778889999999999999999999999999999999999999999999875
No 3
>KOG0937|consensus
Probab=100.00 E-value=1.1e-78 Score=597.66 Aligned_cols=398 Identities=29% Similarity=0.564 Sum_probs=350.9
Q ss_pred eeEEEEEcCCCCEEEEeccCCCcccchHHHHHHHhhccCCCCCCCCeEEcCCEEEEEEEeCcEEEEEEEcCCCChHHHHH
Q psy17615 2 IHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPLFVIE 81 (459)
Q Consensus 2 I~~i~Iln~~G~~l~~r~y~~~~~~~~~~~f~~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~~~~ 81 (459)
++++||+|.+|++|++|.||.+.+....+.|++++.........+|++..++..|+|.++++||+++++..+.+++.+++
T Consensus 1 ~sa~fild~~G~~lisr~yr~dv~~s~~~~F~~~l~~~e~~~~~~p~l~~~g~~~~~ik~s~lylv~~~~~n~~a~~v~~ 80 (424)
T KOG0937|consen 1 ASAVFILDHKGEVLISRDYRGDVPMSSTEKFFRKLFEKEEGDESPPFLVHDGSRFIHIKHSNLYLVAGTRPNVSAALVLS 80 (424)
T ss_pred CceEEEEcCCCcEeEeecccccCChhhhhhHHHHHhhhcccCCCCCeEEeCCceEEEEeecceEEEEEeccCCCHHHHHH
Confidence 58999999999999999999998888899999766553234556899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccCHHHHhhhHHHHHHHHHHHhhCCcccccChHHHHhhcCCCchhhhhhccccCCCCcccCCCCCC
Q psy17615 82 FLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPLATESNVLKELIKPPNILRTIANTMTGGSNVSSILPSGQ 161 (459)
Q Consensus 82 ~L~~~~~~l~~y~~~l~e~~i~~n~~~i~~lldE~id~G~p~~t~~~~l~~~i~~~s~~~~~~~~~~~~~~~~~~~~~~~ 161 (459)
||+++++++.+||+.+.|+.+++||+++||+|||++|+||||.|++..|++++.+++. ++.+. ..+.|
T Consensus 81 ~l~~~~~v~~~y~~~l~e~si~~n~vlvyElLde~mDFGypQ~t~s~iL~~yi~~~~~--~l~~~-------~~~~p--- 148 (424)
T KOG0937|consen 81 FLYAVADVFGDYLSELEEESIRDNFVLVYELLDEVMDFGYPQTTDSEILKNYITQKAN--RLQDA-------QPRPP--- 148 (424)
T ss_pred HHHHHHHHHHHHhccCCccceecchHHHHHHHHHHhccCCcccchHHHHHHHhccccc--ceeec-------CCCCC---
Confidence 9999999999999999999999999999999999999999999999999999998743 21110 00001
Q ss_pred CCCCccccCCCCCccccCCCCCccccccccCCcccccceeEEEEEEEEEEEEeCCCCEEEEEEEEEEEEEEEEcCCCceE
Q psy17615 162 LSSVPWRRTGGSNVSSILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLT 241 (459)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~~nEi~vdV~E~v~~~~~~~G~i~~~~i~G~I~~~~~LsG~P~~~ 241 (459)
....++++||+.+++|++||+|+||+|++++.++++|.+++++|.|+|.|||+|+|||+++
T Consensus 149 -------------------~avtnavsWrs~gi~~~KnevflDViE~Vs~l~~~~G~vl~s~i~G~I~~k~~LsGmPelr 209 (424)
T KOG0937|consen 149 -------------------LAVTNAVSWRSEGIYYGKNEVFLDVIESVSLLYDSNGIVLLSEIVGTIKLKCYLSGMPELR 209 (424)
T ss_pred -------------------cccccceeecccccccccceEEEEhhhhhhHhhhcCCcEEEeeeeeEEEEEEEcCCCceee
Confidence 1224467899999999999999999999999999999999999999999999999999999
Q ss_pred EEecCC--------------ccccccccccccccccccccceEEEeCCCCcEEEEEEEecCCCccccCeEEEEEEEEe--
Q psy17615 242 LSFMNP--------------RLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINHNINFK-- 305 (459)
Q Consensus 242 l~ln~~--------------~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~~lP~~v~~~~~~~-- 305 (459)
|+||+. ..++|++||+||++++|+.+|+|+|+||||+|+||+||.+.. .. |+.-.+.+.+.
T Consensus 210 l~ln~~~~~~~~~~~~~s~~v~ledi~fh~~v~l~~fd~dr~i~FiPPdGeF~Lm~Y~ls~~--vk-Pli~~~~~~~~~~ 286 (424)
T KOG0937|consen 210 LGLNDKVLFDKQGPRSKSKGVELEDIKFHECVRLSRFDNDRTISFIPPDGEFELMRYRLSTH--VK-PLIWFYQLIEEHS 286 (424)
T ss_pred eecCcccccccccccccCcceEeeecccceeechhhccCCceEEecCCCCceEEEEEEecCC--CC-CeEEeeeeeeecc
Confidence 999853 258999999999999999999999999999999999999876 33 66655665554
Q ss_pred CCEEEEEEeecCCCCC--ccceEEEEEcCCCCceeeEEEeeceeeEecCcccccccccccccccCCCcceeecCCceEEE
Q psy17615 306 QNKIDMTIGPKQTIGR--TIENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILT 383 (459)
Q Consensus 306 ~~~~e~~l~~~~~~~~--~~~~v~I~ip~P~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 383 (459)
+.++++.+++++.++. .+++|.|.||+|..+..+...++.|+++|.+ ++++++
T Consensus 287 ~~ri~i~~K~~~~fk~~~~a~~v~I~iP~P~~a~~~~fk~s~G~~~~~~-------------------------e~~~l~ 341 (424)
T KOG0937|consen 287 RSRIEVMVKLREQFKSRSSANNVEICIPVPDDASSPSFKTSLGSAKYDP-------------------------EKSALR 341 (424)
T ss_pred ceeEEEEEechhhcCCccccceEEEEeeCCCccccceEeccCCceeeec-------------------------ccceEE
Confidence 6689999999988864 5889999999999999999988888877666 999999
Q ss_pred EEecccCCCCCcceEEEEEEecCCCCCC---CCCcceEEEEEECceecccceEeEEEeecc--CCCcccceEEEeecCCC
Q psy17615 384 WDVGRIDIENKLPNIRGSFTVQSGQENH---NFNLTINVKFTINQLAISGLKVNRLDMYGE--KYKPFKGVKYITTGGTF 458 (459)
Q Consensus 384 W~I~~~~~~~~~~~l~g~~~~~~~~~~~---~~~~~i~v~F~i~~~t~SGl~V~~l~v~~~--~~~p~k~VrY~t~sg~y 458 (459)
|+|+++++ +.+..+++.+.+.+....+ ...+|++|+|+||++|.||++|+++++.++ +|.+.+||||.|++|.|
T Consensus 342 W~I~~~~g-g~e~~~r~~~~lp~~~~e~~~~~~~~pi~v~FeIp~~T~SgiqVrylki~ep~~~y~s~~WVRy~T~s~~Y 420 (424)
T KOG0937|consen 342 WTIKKFVG-GKEYSLRARMDLPSEEHEEQCTEGLGPIKVKFEIPYFTVSGIQVRYLKIIEPKSQYQSLPWVRYNTQSGPY 420 (424)
T ss_pred EEeccccC-CceEEEEEeecCCccccCCCCcccCCceEEEEEecccccCCeEEEEEEecccccCCCccceEEEEccCCce
Confidence 99999998 8899999999998765433 457899999999999999999999999873 79999999999999998
Q ss_pred C
Q psy17615 459 Q 459 (459)
Q Consensus 459 ~ 459 (459)
+
T Consensus 421 ~ 421 (424)
T KOG0937|consen 421 E 421 (424)
T ss_pred E
Confidence 5
No 4
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents the C-terminal domain of the mu subunit from various clathrin adaptors (AP1, AP2 and AP3) []. The C-teminal domain has an immunoglobulin-like beta-sandwich fold consisting of 9 strands in 2 sheets with a Greek key topology, similar to that found in cytochrome f and certain transcription factors []. The mu subunit regulates the coupling of clathrin lattices with particular membrane proteins by self-phosphorylation via a mechanism that is still unclear []. The mu subunit possesses a highly conserved N-terminal domain of around 230 amino acids, which may be the region of interaction with other AP proteins; a linker region of between 10 and 42 amino acids; and a less well-conserved C-terminal domain of around 190 amino acids, which may be the site of specific interaction with the protein being transported in the vesicle []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1H6E_A 3L81_A 1W63_V 4EMZ_A 4EN2_A 2VGL_M 3ML6_F 2PR9_A 2JKT_M 1I31_A ....
Probab=100.00 E-value=4.8e-57 Score=439.14 Aligned_cols=245 Identities=36% Similarity=0.736 Sum_probs=206.3
Q ss_pred cccccCCcccccceeEEEEEEEEEEEEeCCCCEEEEEEEEEEEEEEEEcCCCceEEEecCC-------cccccccccccc
Q psy17615 187 VPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNP-------RLFDDVSFHPCV 259 (459)
Q Consensus 187 ~~WR~~~~~~~~nEi~vdV~E~v~~~~~~~G~i~~~~i~G~I~~~~~LsG~P~~~l~ln~~-------~~l~d~~fH~cV 259 (459)
+|||+.+++|++|||||||.|+++|+++++|.++.++|.|+|.|+++|+|+|+|+|+||++ ..++|++|||||
T Consensus 1 ~~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~~~~~~v~G~v~~~~~l~g~p~i~l~l~~~~~~~~~~~~l~~~~fH~cV 80 (262)
T PF00928_consen 1 VPWRPSGIKYKKNEIFVDVVEKISAVLDRDGNILSSEVKGSVQCKSFLSGMPEIKLTLNNPLVVSKNGIKLDDVSFHPCV 80 (262)
T ss_dssp -TTS-STB--SSEEEEEEEEEEEEEEEETTSEEEEEEEEEEEEEEEE-SST-EEEEEESSSCCCTSSSBEESEEEEETTE
T ss_pred CCcccCCcccccceEEEEEEEEEEEEEccCCcEEEEEEEEEEEEEEeCCCCCeEEEEecCccccccCceeeeceeecccc
Confidence 5899999999999999999999999999999999999999999999999999999999988 789999999999
Q ss_pred ccccccccceEEEeCCCCcEEEEEEEecCCCccccCeEEEEEEEEe-CCEEEEEEeecCCCCC--ccceEEEEEcCCCCc
Q psy17615 260 RFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINHNINFK-QNKIDMTIGPKQTIGR--TIENIVIEIPMPSVV 336 (459)
Q Consensus 260 ~~~~f~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~~lP~~v~~~~~~~-~~~~e~~l~~~~~~~~--~~~~v~I~ip~P~~~ 336 (459)
|++.|++++.|+|+||||+|+||+||++.. ..+||.+.|++... ++++++.+++++++.. .++||.|+||+|.++
T Consensus 81 ~~~~~~~~~~i~f~PPdg~f~Ll~Yr~~~~--~~~P~~i~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~v~I~iplP~~~ 158 (262)
T PF00928_consen 81 DLSKFESDRVISFIPPDGEFTLLRYRVSSN--SPLPFKITCWVSEKSSGRFEVTIELESNFPNKISLENVVIRIPLPPGT 158 (262)
T ss_dssp ECCCCCSHTEEEE---SEEEEEEEEEEESS--S--SEEEEEEEEEETTTEEEEEEEEEE-S-TTSEEEEEEEEEE--TTE
T ss_pred CccccccccceecCCCCceEEEEEEEccCC--CCCCcEEEEEeccCCCceEEEEEEecccCCCCceeceEEEEeecCCcc
Confidence 999999999999999999999999999876 68999999999884 7899999998877654 799999999999998
Q ss_pred eeeEEEeeceeeEecCcccccccccccccccCCCcceeecCCceEEEEEecccCCCCCcceEEEEEEecCCCCCCC--CC
Q psy17615 337 LNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRGSFTVQSGQENHN--FN 414 (459)
Q Consensus 337 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~W~I~~~~~~~~~~~l~g~~~~~~~~~~~~--~~ 414 (459)
..+.+..+.|+++|+ .++++++|+|+++++ +++++++|++++......+. .+
T Consensus 159 ~~~~~~~~~G~~~~~-------------------------~~~~~l~W~I~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~ 212 (262)
T PF00928_consen 159 SSPSIESSDGSAEYD-------------------------EEENALVWKIKKLPG-GSESTLSGTLEFSSPSSVPSDWSF 212 (262)
T ss_dssp EEEEEEESSSEEEEE-------------------------TGCTEEEEEEEEEET-SEEEEEEEEEEEEEECCSS-S---
T ss_pred ccceeeecCceEEEE-------------------------ccCCEEEEEECCccC-cccccEEEEEEecCCCcccccccc
Confidence 888887777766554 499999999999998 88999999999987654443 67
Q ss_pred cceEEEEEECceecccceEeEEEeec--cCCCcccceEEEeecCCCC
Q psy17615 415 LTINVKFTINQLAISGLKVNRLDMYG--EKYKPFKGVKYITTGGTFQ 459 (459)
Q Consensus 415 ~~i~v~F~i~~~t~SGl~V~~l~v~~--~~~~p~k~VrY~t~sg~y~ 459 (459)
+||+|+|++|++++||++|++++|.+ ++|+|+|||||.|+||+||
T Consensus 213 ~pi~v~F~~~~~~~Sgl~V~~l~v~~~~~~~~~~k~vky~t~s~~Y~ 259 (262)
T PF00928_consen 213 FPISVEFTIPGYTLSGLKVRSLDVVNEDENYKPYKWVKYVTKSGSYE 259 (262)
T ss_dssp --EEEEEEESTSETTT-EEEEEEEE-SSCGGGSEEEEEEEEEEEEEE
T ss_pred eeEEEEEEeCCcccCCCEEEEEEeEecCCCCCCcccEEEEEEcCcEE
Confidence 89999999999999999999999987 5899999999999999996
No 5
>KOG2635|consensus
Probab=100.00 E-value=2.5e-43 Score=342.95 Aligned_cols=401 Identities=20% Similarity=0.285 Sum_probs=309.5
Q ss_pred eeEEEEEcCCCCEEEEeccCCCcccc----hHHHHHHHhhccCCCCCCCCeEEcCCEEEEEEEeCcEEEEEEEcCCCChH
Q psy17615 2 IHSLFIINSTSDIILEKHWKRIISRS----VCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPL 77 (459)
Q Consensus 2 I~~i~Iln~~G~~l~~r~y~~~~~~~----~~~~f~~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~~ 77 (459)
+-+.-|+++.|+.+++|+|+++ +|. .+.+|.+.+.. +.++++++.+.++|||++.+++|+|++|..+.|++
T Consensus 3 vlaa~i~t~~Gk~ivsRqf~~M-sr~RIEgLl~aFpkLv~~----~~qhT~vEt~~VRYVYqP~d~lY~vLITtk~SNIl 77 (512)
T KOG2635|consen 3 VLAASINTKTGKAIVSRQFREM-SRSRIEGLLAAFPKLVSA----GKQHTFVETDSVRYVYQPLDNLYIVLITTKQSNIL 77 (512)
T ss_pred EEEEEEeecCCceeeehHhHhh-hHHHHHHHHHHhHHhhcc----CCCccEEecccEEEEEEecccEEEEEEeccccchh
Confidence 4567788999999999999954 553 46678877764 67899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccCHHHHhhhHHHHHHHHHHHhhCCcccccChHHHHhhcCCCchhhhhhccccCC-------
Q psy17615 78 FVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPLATESNVLKELIKPPNILRTIANTMTGG------- 150 (459)
Q Consensus 78 ~~~~~L~~~~~~l~~y~~~l~e~~i~~n~~~i~~lldE~id~G~p~~t~~~~l~~~i~~~s~~~~~~~~~~~~------- 150 (459)
.++++|+.|.+++.+||..+.|+.|.+|.+.+...|||++..||....+..++|.+..|+||++|++..+...
T Consensus 78 eDl~TL~Lfskvipey~~slde~eI~~~~FelifAFDEivsLGyre~v~laQikty~eMdSHEEKi~e~v~~nke~ea~q 157 (512)
T KOG2635|consen 78 EDLETLRLFSKVIPEYCSSLDEKEILENAFELIFAFDEIVSLGYRENVNLAQIKTYLEMDSHEEKIHELVMRNKEREAKQ 157 (512)
T ss_pred hHHHHHHHHHHhchhhhhhhhHHHHHHhhhhhhhccchhhhhcccccccHHHhhhhhccccHHHHHHHHHHHhhhHHHHH
Confidence 9999999999999999999999999999777778999999999999999999999999999999886543200
Q ss_pred ----------------------CC--cc----------------------cCCCCCCC----CCCcccc--CCC--CCc-
Q psy17615 151 ----------------------SN--VS----------------------SILPSGQL----SSVPWRR--TGG--SNV- 175 (459)
Q Consensus 151 ----------------------~~--~~----------------------~~~~~~~~----~~~~~~~--~~~--~~~- 175 (459)
.. .. .+.|..++ ++.|.++ -|+ .+.
T Consensus 158 ~mkrKaKElqr~r~ea~rrgg~~~~~~~~~~s~g~~~~s~~~~~~~~~~~~~~~~~~sa~~~~s~pak~mklG~k~~~s~ 237 (512)
T KOG2635|consen 158 EMKRKAKELQRARKEAERRGGSLNPGFDAIGSSGYSSVSTTNAINRVESIAQKPKQQSAAKASSAPAKAMKLGKKTKNSD 237 (512)
T ss_pred HHHHHHHHHHHHHHhhhccccccCCCccccccccccCCcccchhhccccccccccccccccCCCCCchhhhhcccccchh
Confidence 00 00 00000000 0001000 000 000
Q ss_pred ----------cccC----CCCCccccccccCCcccccceeEEEEEEEEEEEEeCCCCEEEEEEEEEEEEEEEEcCCCceE
Q psy17615 176 ----------SSIL----PSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLT 241 (459)
Q Consensus 176 ----------~~~~----~~~~~~~~~WR~~~~~~~~nEi~vdV~E~v~~~~~~~G~i~~~~i~G~I~~~~~LsG~P~~~ 241 (459)
.++. +.++.+...--+......+|.|++.+.|+|++.++|+|.+.+.++.|.+.+++...-...+.
T Consensus 238 ~~~d~Lk~ege~ia~~~s~~g~~s~aap~~~~p~v~~e~v~i~ieEkln~~~~RDGgi~s~E~qG~lsLrI~d~e~~~i~ 317 (512)
T KOG2635|consen 238 TFVDKLKGEGERIAGASSAIGSASSAAPPPTAPDVPEESVHIVIEEKLNVRLSRDGGIKSGEVQGTLSLRIKDEEYGDIE 317 (512)
T ss_pred hHHHHhhccccccccccccccccccCCCCCCCCCCccceEEEEEeeeEeEEEcccCCccceeeeeeEEEEEccccccceE
Confidence 0111 11221111111122334566699999999999999999999999999999999888888899
Q ss_pred EEecCCc-cccccccccccccccccccceEEEeCCCCcEE------EEEEEecCCCccccCeEEEEEEEEeCCEEEEEEe
Q psy17615 242 LSFMNPR-LFDDVSFHPCVRFKRWEAERILSFIPPDGNFR------LMSYHINTQNLVAIPLYINHNINFKQNKIDMTIG 314 (459)
Q Consensus 242 l~ln~~~-~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~------Lm~Yr~~~~~~~~lP~~v~~~~~~~~~~~e~~l~ 314 (459)
|.|+|.. .--++++||.+|++.|.++..|...+|+..|+ |++||....+...+|++++||+++.++.+++.|.
T Consensus 318 lkl~n~~~~g~q~ktHPNlDK~~f~s~s~iglk~~~K~FPvn~~VGvLkWR~~~~des~iPlTincWPSes~~g~dV~iE 397 (512)
T KOG2635|consen 318 LKLANGRDKGTQLKTHPNLDKKVFLSSSLIGLKRPEKPFPVNSDVGVLKWRMVDEDESEIPLTINCWPSESGNGYDVNIE 397 (512)
T ss_pred EEEcCCCCcceeeeeCCCcchhhhccccccccccCCCCCCcCCcceEEEEeecccccccCceEEEeccccCCCCeEEEEE
Confidence 9997632 34568999999999999999999999999996 7999998877778999999999987544555544
Q ss_pred ecCCCCCccceEEEEEcCCCCceeeEEEeeceeeEecCcccccccccccccccCCCcceeecCCceEEEEEecccCCCCC
Q psy17615 315 PKQTIGRTIENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENK 394 (459)
Q Consensus 315 ~~~~~~~~~~~v~I~ip~P~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~W~I~~~~~~~~ 394 (459)
..+.....+.||.|.||+|.++ .+.+....| +|.|+..++.+.|+|+.+.. +
T Consensus 398 Ye~~~~~eL~dV~i~iPlP~~i-apsv~~~Dg-------------------------e~~~~~~~~~leW~I~~Ia~-N- 449 (512)
T KOG2635|consen 398 YEAVLECELNDVIITIPLPANI-APSVGECDG-------------------------EYRYDERKNVLEWSIGVIAK-N- 449 (512)
T ss_pred EeehhcccccceEEEeeccccc-CCccceecc-------------------------eEEeccccceeEEEeeeecc-C-
Confidence 4332223678999999999987 455555544 45556699999999999943 4
Q ss_pred cceEEEEEEecCCCCCCCCCcceEEEEEECceecccceEeEEEee
Q psy17615 395 LPNIRGSFTVQSGQENHNFNLTINVKFTINQLAISGLKVNRLDMY 439 (459)
Q Consensus 395 ~~~l~g~~~~~~~~~~~~~~~~i~v~F~i~~~t~SGl~V~~l~v~ 439 (459)
.+|+++|+-....++.++|++|.|... .+++|+.|.++.-.
T Consensus 450 ---~SGslEFs~~~~~~~~fFPl~VsF~s~-~~ftgl~vqkVv~~ 490 (512)
T KOG2635|consen 450 ---FSGSLEFSCPASDPDGFFPLSVSFTSD-TVFTGLFVQKVVRN 490 (512)
T ss_pred ---CCCcEEEeecCCCCCceeeEEEEEEec-ccccceEEEEEEEc
Confidence 478999987777889999999999988 69999999998553
No 6
>KOG2677|consensus
Probab=100.00 E-value=3.3e-36 Score=303.27 Aligned_cols=258 Identities=19% Similarity=0.308 Sum_probs=212.6
Q ss_pred CcccccceeEEEEEEEEEEEEeCCCCEEEEEEEEEEEEEEEEcCCCceEEEecCC---------------------cccc
Q psy17615 193 GVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNP---------------------RLFD 251 (459)
Q Consensus 193 ~~~~~~nEi~vdV~E~v~~~~~~~G~i~~~~i~G~I~~~~~LsG~P~~~l~ln~~---------------------~~l~ 251 (459)
-..|..+||.|||.++.+++++++|.++...|.-+|.|.|||+|.|+|.|+||+. ..+.
T Consensus 581 k~nY~e~EI~v~~~Defsg~V~Keg~~~~~~v~tri~cL~FlsG~~ec~lgLND~~~kg~Eiv~rkDimp~~t~kwI~~~ 660 (922)
T KOG2677|consen 581 KSNYLEEEITVDVRDEFSGIVSKEGQILQHHVLTRIHCLSFLSGLAECRLGLNDILVKGNEIVLRKDIMPTTTTKWIKLH 660 (922)
T ss_pred ccccccceeEEEEEeccceeecccchhhhhhhhhhhhhhhhccCCceeEeecchhhhcccceeEeccccccccccceeee
Confidence 3469999999999999999999999999999999999999999999999999852 2588
Q ss_pred ccccccccccccccccceEEEeCCCC-cEEEEEEEecCCCccccCeEEEEEEEEeCCEEEEEEeec--C----CC----C
Q psy17615 252 DVSFHPCVRFKRWEAERILSFIPPDG-NFRLMSYHINTQNLVAIPLYINHNINFKQNKIDMTIGPK--Q----TI----G 320 (459)
Q Consensus 252 d~~fH~cV~~~~f~~~~~i~F~PPdG-~F~Lm~Yr~~~~~~~~lP~~v~~~~~~~~~~~e~~l~~~--~----~~----~ 320 (459)
+|.||-||+.+.|+++|+|.|.|||| +|+|||||+.... ..+||.++..+...|.++|++.-++ + +. -
T Consensus 661 ~~~FH~cVn~~eF~~srVI~F~PlDaCrFElMRFrt~~~~-~~lpftlks~~~V~Ga~VEvq~~~~mat~~qr~rd~~~~ 739 (922)
T KOG2677|consen 661 ECRFHGCVNEDEFHNSRVILFNPLDACRFELMRFRTVFAE-KTLPFTLKSATSVNGAEVEVQSWLRMATGFQRNRDPLTQ 739 (922)
T ss_pred eeeeecccchhhccccceEEecCcccceeeeeeeeeecCC-CcCceeeeeeeeeccceeehHHHHHHHhhhhhccCcccc
Confidence 99999999999999999999999999 9999999998765 4899999999999888999985432 1 11 1
Q ss_pred CccceEEEEEcCCCCceeeEEEe-eceeeEecCcccccc----cccccc----cccCCCcceeecCCceEEEEEecccCC
Q psy17615 321 RTIENIVIEIPMPSVVLNCTLLQ-NQGKYTFDPIKKILT----WDLHST----ERSGDQGKYTFDPIKKILTWDVGRIDI 391 (459)
Q Consensus 321 ~~~~~v~I~ip~P~~~~~~~~~~-~~G~~~~~~~~~~~~----~~~~~~----~~~~~~g~~~~~~~~~~l~W~I~~~~~ 391 (459)
.+|+||.|++|+|..|.....+- -.|.-..+. +..| .+++.. ......|+++|++..+.++|+|++++.
T Consensus 740 vpCenI~IrfPVPs~WIk~fr~e~~~g~kSlka--K~nR~a~~gsl~~~~sepvi~vt~G~AKYEhay~siVWrI~RLPd 817 (922)
T KOG2677|consen 740 VPCENIMIRFPVPSEWIKNFRRESVLGEKSLKA--KVNRGASFGSLSVSGSEPVIRVTLGTAKYEHAYNSIVWRINRLPD 817 (922)
T ss_pred CcccceeEeccCcHHHHHHHHHHhhhccchhhh--hhcccccccchhhccCCceEEEeecchhhHHhhhhheeecccCCc
Confidence 47999999999999987655431 122222221 1111 122222 224677999999999999999999997
Q ss_pred C----CCcceEEEEEEecCCCCCCCC-CcceEEEEEECceecccceEeEEEeeccCCCcccceEEEee
Q psy17615 392 E----NKLPNIRGSFTVQSGQENHNF-NLTINVKFTINQLAISGLKVNRLDMYGEKYKPFKGVKYITT 454 (459)
Q Consensus 392 ~----~~~~~l~g~~~~~~~~~~~~~-~~~i~v~F~i~~~t~SGl~V~~l~v~~~~~~p~k~VrY~t~ 454 (459)
+ +..|.|.|.+++++....+.. .+.+.|+|++|..++|...||+|.|. ++..+.|||+|..+
T Consensus 818 Knsa~~hpHcl~c~lELgSd~evPs~f~p~~~V~FsmP~t~aS~t~VRSisVE-~~~~v~K~V~y~A~ 884 (922)
T KOG2677|consen 818 KNSASGHPHCLFCHLELGSDREVPSRFAPHVNVEFSMPTTSASKTSVRSISVE-DKTDVRKWVNYSAH 884 (922)
T ss_pred cccccCCCeeEEEEEeccccccCchhhccccceeeeccccccccceeeeeecc-ccccHHHHHhhhhh
Confidence 5 478899999999998777765 47899999999999999999999995 46789999999865
No 7
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=99.95 E-value=1.4e-27 Score=210.40 Aligned_cols=135 Identities=29% Similarity=0.518 Sum_probs=116.2
Q ss_pred CeeEEEEEcCCCCEEEEeccCCCcccch---HHHHHHHhhccCCCCCCCCeEEcCCEEEEEEEeCcEEEEEEEcCCCChH
Q psy17615 1 MIHSLFIINSTSDIILEKHWKRIISRSV---CDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPL 77 (459)
Q Consensus 1 MI~~i~Iln~~G~~l~~r~y~~~~~~~~---~~~f~~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~~ 77 (459)
||++++|+|++|+++++|||++...+.. .+.+.+.... +....+|++.+++++++|++.++|||+++++.++||+
T Consensus 1 MI~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel 78 (141)
T PF01217_consen 1 MIKAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKKKSS--RNSKQSPIFEHDNYRIVYKRYSDLYFVVVGDENENEL 78 (141)
T ss_dssp SEEEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHHHHT--SSSSSTSEEEETTEEEEEEEETTEEEEEEESSTSBHH
T ss_pred CEEEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHHHHh--cccccceeeecccceeeeEeeccEEEEEEeecccchH
Confidence 9999999999999999999976543322 2333333333 3345699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccCHHHHhhhHHHHHHHHHHHhhCCcccccChHHHHhhcCCC
Q psy17615 78 FVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPLATESNVLKELIKPP 137 (459)
Q Consensus 78 ~~~~~L~~~~~~l~~y~~~l~e~~i~~n~~~i~~lldE~id~G~p~~t~~~~l~~~i~~~ 137 (459)
+++++|+.++++|+.||++++|.+|++||+.+|++||||+|+|+|++||++.|...+.+.
T Consensus 79 ~~~e~l~~~v~~l~~~~~~v~e~~i~~N~~~v~~~LDEiid~G~i~etd~~~I~~~v~~~ 138 (141)
T PF01217_consen 79 LLLEFLHRLVEVLDDYFGNVSEKDILENFDLVYLILDEIIDGGIILETDPNVILKRVTMQ 138 (141)
T ss_dssp HHHHHHHHHHHHHHHHHSS-SHHHHHHTHHHHHHHHHHHEETTEES--THHHHHHHHHHC
T ss_pred HHHHHHHHhhhhhhhhhccccHHHHHHCHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999988653
No 8
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]
Probab=99.87 E-value=8.3e-22 Score=164.33 Aligned_cols=132 Identities=20% Similarity=0.303 Sum_probs=118.0
Q ss_pred CeeEEEEEcCCCCEEEEeccCCCccc---chHHHHHHHhhccCCCCCCCCeEEcCCEEEEEEEeCcEEEEEEEcCCCChH
Q psy17615 1 MIHSLFIINSTSDIILEKHWKRIISR---SVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPL 77 (459)
Q Consensus 1 MI~~i~Iln~~G~~l~~r~y~~~~~~---~~~~~f~~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~~ 77 (459)
||++++|+|++|++++.|||.+.... ..+......+.+ ++.+.+.+++..+.+++|+++++|||+++.+.++|++
T Consensus 1 ~i~~vli~nrqgk~RL~K~yt~~~~~e~~kli~~i~~lIs~--R~~ke~N~~e~k~~kiVYrrYA~LyF~f~Vd~~dnEl 78 (152)
T COG5030 1 MIKFVLIFNRQGKPRLVKWYTPVSDPEQAKLIADIYELISA--RKPKESNFIEGKNEKIVYRRYATLYFVFGVDNDDNEL 78 (152)
T ss_pred CeEEEEEEcCCCceeeeEeeccCCcHHHHHHHHHHHHHHHc--CCchhcccccccCcEEEeeecCcEEEEEEEcCCCCcc
Confidence 89999999999999999999875332 245567777776 3345788999999899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccCHHHHhhhHHHHHHHHHHHhhCCcccccChHHHHhhc
Q psy17615 78 FVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPLATESNVLKELI 134 (459)
Q Consensus 78 ~~~~~L~~~~~~l~~y~~~l~e~~i~~n~~~i~~lldE~id~G~p~~t~~~~l~~~i 134 (459)
.+++++|.|+++|+.|||++||.++..||-.+|.+||||+.+|..++++++.+.+.+
T Consensus 79 ~iL~lIh~FVE~lDr~FgnVCELdlIFNF~kv~~ILdE~i~gG~i~Es~~~~vl~~v 135 (152)
T COG5030 79 IILELIHNFVEILDRFFGNVCELDLIFNFQKVYAILDEMILGGEIIESSKNEVLEHV 135 (152)
T ss_pred hHHHHHHHHHHHHHHHhccceeeEeEeeHHHHHHHHHHHHhCCeeeecCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988766554
No 9
>KOG0934|consensus
Probab=99.83 E-value=8.8e-21 Score=158.12 Aligned_cols=127 Identities=19% Similarity=0.270 Sum_probs=111.8
Q ss_pred CeeEEEEEcCCCCEEEEeccCCCccc--c-hHHHHHHHhhccCCCCCCCCeEEcCCEEEEEEEeCcEEEEEEEcCCCChH
Q psy17615 1 MIHSLFIINSTSDIILEKHWKRIISR--S-VCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPL 77 (459)
Q Consensus 1 MI~~i~Iln~~G~~l~~r~y~~~~~~--~-~~~~f~~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~~ 77 (459)
||+++++.+++|+++++|||.....+ . ......+.+.+ ++.+.|.++++.+++.||+++++|||++....++|++
T Consensus 1 mi~f~LlvsrQGk~rL~k~y~~~~~~er~~i~re~i~~~La--r~pk~csfie~kd~kvVyrryasl~f~~~v~~~dNEL 78 (145)
T KOG0934|consen 1 MIKFFLLVSRQGKTRLQKWYEALSIKERKKIERELIKSVLA--RKPKMCSFIEYKDEKVVYRRYASLFFCVGVEDNDNEL 78 (145)
T ss_pred CeEEEEEEeccCceehhHHHhhhcHHHHHHHHHHHHHHHHh--CCcccccchhccCceehhhhhhhEEEEEEEecCCchh
Confidence 89999999999999999999875332 2 22334444444 4567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccCHHHHhhhHHHHHHHHHHHhhCCcccccChHH
Q psy17615 78 FVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPLATESNV 129 (459)
Q Consensus 78 ~~~~~L~~~~~~l~~y~~~l~e~~i~~n~~~i~~lldE~id~G~p~~t~~~~ 129 (459)
.++|++|+++++|+.|||++||.+|..||..+|.+|||++-.|..+++..+.
T Consensus 79 ~~LE~IH~~vE~lDkYFg~VCELDiiFNfekay~ILde~~~~g~~~e~~k~~ 130 (145)
T KOG0934|consen 79 AILEFIHNYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEIQETSKND 130 (145)
T ss_pred hHHHHHHHHHHHHHHHhccceeeEEEEehHhHHHHHHHHhcCcchHhhhccc
Confidence 9999999999999999999999999999999999999999999988887654
No 10
>KOG0935|consensus
Probab=99.80 E-value=3.3e-19 Score=144.73 Aligned_cols=133 Identities=18% Similarity=0.237 Sum_probs=110.2
Q ss_pred CeeEEEEEcCCCCEEEEeccCCCcc--c-chHHHHHHHhhccCCCCCCCCeEEcC-CEEEEEEEeCcEEEEEEEcCCCCh
Q psy17615 1 MIHSLFIINSTSDIILEKHWKRIIS--R-SVCDYFFEAQNSVAKPEDIPPIITTP-HHYLISVYRKGVFFVAVTMSEVPP 76 (459)
Q Consensus 1 MI~~i~Iln~~G~~l~~r~y~~~~~--~-~~~~~f~~~~~~~~~~~~~~pi~~~~-~~~~v~~~~~~l~~v~~~~~~~n~ 76 (459)
||.+|+|.|+.|+.+++|||.+... + ...+...+.+.. +..+....++.. ....+++++++|||+.+.+...|+
T Consensus 1 mi~FILiqNr~Gk~RLak~yv~~dd~ek~~~~~~vh~lvs~--Rd~K~~~~~~~~~~~~~~~rryagLyf~~~vd~tDne 78 (143)
T KOG0935|consen 1 MIRFILIQNRAGKTRLAKWYVQFDDDEKQKLIEEVHALVTV--RDAKHTNFVEFRNFKIIYRRRYAGLYFCICVDVTDNE 78 (143)
T ss_pred CeEEEEEEccccceeheeeeeccCchHHHHHHHHHHHHHhh--ccchhhhheeeeeceEEEEEeeCCEEEEEEEecCCch
Confidence 9999999999999999999986433 2 234556666665 333444455444 444555699999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccCHHHHhhhHHHHHHHHHHHhhCCcccccChHHHHhhcC
Q psy17615 77 LFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPLATESNVLKELIK 135 (459)
Q Consensus 77 ~~~~~~L~~~~~~l~~y~~~l~e~~i~~n~~~i~~lldE~id~G~p~~t~~~~l~~~i~ 135 (459)
+..++.+|.|+++|+.||+++||.++..||-.||.++|||+-+|.+++|+...+-+.+.
T Consensus 79 layLe~IHlFVEvLd~fF~NVCELDlvFNFyKVy~i~DEm~l~GEi~Etsk~~vlerl~ 137 (143)
T KOG0935|consen 79 LAYLEHIHLFVEVLDEFFHNVCELDLVFNFYKVYTIVDEMFLAGEIRETSKTKVLERLL 137 (143)
T ss_pred HHHHHHHHHHHHHHHHHhccccceeeeeeeeeHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877655543
No 11
>KOG0936|consensus
Probab=99.77 E-value=2e-18 Score=146.00 Aligned_cols=136 Identities=22% Similarity=0.314 Sum_probs=118.0
Q ss_pred CeeEEEEEcCCCCEEEEeccCCCc---ccchHHHHHHHhhccCCCCCCCCeEEc----C--CEEEEEEEeCcEEEEEEEc
Q psy17615 1 MIHSLFIINSTSDIILEKHWKRII---SRSVCDYFFEAQNSVAKPEDIPPIITT----P--HHYLISVYRKGVFFVAVTM 71 (459)
Q Consensus 1 MI~~i~Iln~~G~~l~~r~y~~~~---~~~~~~~f~~~~~~~~~~~~~~pi~~~----~--~~~~v~~~~~~l~~v~~~~ 71 (459)
||+|++|+|.+|++++.|+|.... ++..++..+..+.+ ++...+.+++. + +.+++|+.+..|||+.+.+
T Consensus 1 MI~AvlifNn~gkPRL~KFY~p~~~~~Qq~lir~vf~lvs~--R~~n~~nFLe~~~l~g~~d~rlIYrhYATLYFvfvvD 78 (182)
T KOG0936|consen 1 MIKAVLIFNNKGKPRLVKFYTPVDEEKQQQLIREVFHLVSK--RPDNVCNFLEGNSLIGGSDNRLIYRHYATLYFVFVVD 78 (182)
T ss_pred CeeEEEEecCCCCcceeeecCcCChHHHHHHHHHHHHHHHc--CCchHhhhhccccccCCccceeehheeeeEEEEEEEc
Confidence 999999999999999999998742 23445566666665 44556666652 3 5789999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhccccCHHHHhhhHHHHHHHHHHHhhCCcccccChHHHHhhcCCCc
Q psy17615 72 SEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPLATESNVLKELIKPPN 138 (459)
Q Consensus 72 ~~~n~~~~~~~L~~~~~~l~~y~~~l~e~~i~~n~~~i~~lldE~id~G~p~~t~~~~l~~~i~~~s 138 (459)
+.++++.++++++-|++.|+..|..+||.++..|++.++.+|+|++.+|...+|+.|.+..-+...+
T Consensus 79 ~sEsEL~iLDLIQvfVEtLDkCF~nVcELDliF~~~k~h~iL~EiV~GGmVlETn~neIv~av~~~n 145 (182)
T KOG0936|consen 79 SSESELGILDLIQVFVETLDKCFENVCELDLIFNWQKVHAILAEIVMGGMVLETNMNEIVAAVDEQN 145 (182)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhhhhhheeeHHHHHHHHHHHHhCCeEEeccHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999998888776543
No 12
>KOG3343|consensus
Probab=99.76 E-value=5.6e-18 Score=144.69 Aligned_cols=141 Identities=16% Similarity=0.225 Sum_probs=126.0
Q ss_pred eeEEEEEcCCCCEEEEeccCCCcccc--hHHHHHHHhhccCCCCCCCCeEEcCCEEEEEEEeCcEEEEEEEcCCCChHHH
Q psy17615 2 IHSLFIINSTSDIILEKHWKRIISRS--VCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPLFV 79 (459)
Q Consensus 2 I~~i~Iln~~G~~l~~r~y~~~~~~~--~~~~f~~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~~ 79 (459)
+++++|+|++|++++.|||.+..+.. ...+|.+.+.++. .+....|..++|..++|+..-||+|..+...++|++++
T Consensus 9 vk~iliLD~~G~Ri~aKYY~~~~~s~vkeqkaFEK~lF~KT-~kt~~eI~~ldg~~vvYk~~~Dl~fyv~G~~~ENEl~L 87 (175)
T KOG3343|consen 9 VKAILILDSDGKRILAKYYDDPHPSTVKEQKAFEKNLFSKT-SKTESEILLLDGNTVVYKSVIDLHFYVVGSEEENELML 87 (175)
T ss_pred hheEEEEcCCCCEeeeeecCCCcchhHHHHHHHHHHHhccc-ccccceeEEecCcEEEEEecccEEEEEecCcchhHHHH
Confidence 67999999999999999999876652 3457999988753 34567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc-ccCHHHHhhhHHHHHHHHHHHhhCCcccccChHHHHhhcCCCchhhhh
Q psy17615 80 IEFLDRVVTTFHDYFN-DCSESVLKDNYVVVYEILDEMLDNGFPLATESNVLKELIKPPNILRTI 143 (459)
Q Consensus 80 ~~~L~~~~~~l~~y~~-~l~e~~i~~n~~~i~~lldE~id~G~p~~t~~~~l~~~i~~~s~~~~~ 143 (459)
.+.|+.+.+.+.-.+. ++....+.+|+|.+..++||+||+|.+++||++++...+..++....+
T Consensus 88 ~svL~~l~dal~llLr~nveKr~llEN~D~i~L~~DEiiD~GvILEtdp~~ia~rv~~~~~~~~~ 152 (175)
T KOG3343|consen 88 MSVLTCLFDALSLLLRKNVEKRELLENLDLIFLALDEIIDGGVILETDPNQIAQRVALRPTDEPL 152 (175)
T ss_pred HHHHHHHHHHHHHHHHhChhHHHHHhhhccceeehhhhccCceEEecCHHHHHHHhccCCCCcch
Confidence 9999999999999997 688899999999999999999999999999999999999887665433
No 13
>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.5e-12 Score=108.08 Aligned_cols=136 Identities=17% Similarity=0.236 Sum_probs=116.8
Q ss_pred eeEEEEEcCCCCEEEEeccCCCcccc----------hHHHHHHHhhccCCCCCCCCeEEcCCEEEEEEEeCcEEEEEEEc
Q psy17615 2 IHSLFIINSTSDIILEKHWKRIISRS----------VCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTM 71 (459)
Q Consensus 2 I~~i~Iln~~G~~l~~r~y~~~~~~~----------~~~~f~~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~ 71 (459)
+.|++|+|++|++|+.|||.+..... ...+|.+.+.... -+.+..|...++...+|.+..++.|+.+..
T Consensus 8 v~a~LilDsqGeriy~kyy~pph~~eg~~~vFnsvkkekefek~l~eKt-~k~~~~Il~f~d~lV~~k~~~dv~~yiv~~ 86 (187)
T COG5541 8 VEALLILDSQGERIYRKYYQPPHRSEGHQLVFNSVKKEKEFEKKLAEKT-AKDRESILMFYDRLVMCKRLDDVLLYIVSP 86 (187)
T ss_pred eeeeEEecCCccchhhhhcCCcccccccchhhcchhHHHHHHHHHHHHh-hcCccceeeEcceeeeeeeehhEEEEEecc
Confidence 57999999999999999997643221 2345777766532 255678999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhccc-cCHHHHhhhHHHHHHHHHHHhhCCcccccChHHHHhhcCCCc
Q psy17615 72 SEVPPLFVIEFLDRVVTTFHDYFND-CSESVLKDNYVVVYEILDEMLDNGFPLATESNVLKELIKPPN 138 (459)
Q Consensus 72 ~~~n~~~~~~~L~~~~~~l~~y~~~-l~e~~i~~n~~~i~~lldE~id~G~p~~t~~~~l~~~i~~~s 138 (459)
-++|+.++.+.+..|..+|.-.+.. .++..+.+|||.+..++||.||.|.+.+|+++.+.+.++.+.
T Consensus 87 meeNE~~l~q~f~~ir~Al~li~k~~~dkr~v~enYDqivl~vdEtid~Gvilet~s~~ia~rv~K~p 154 (187)
T COG5541 87 MEENEPFLGQVFDEIRAALILIVKTPTDKRNVWENYDQIVLLVDETIDEGVILETKSDEIADRVPKPP 154 (187)
T ss_pred cccccHHHHHHHHHHHHHHHHHHcCCcchhhHHhhhceEEEeeehhcccceEeecChHHHHHhCCCCC
Confidence 9999999999999999999999985 456679999999999999999999999999999999998753
No 14
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans.This C-terminal domain is structurally similar to mu homology domains, and is the region of the muniscin proteins involved in the interactions with the endocytic adaptor-scaffold proteins Ede1-eps15. This interaction influences muniscin localisation. The muniscins provide a combined adaptor-membrane-tubulation activity that is important for regulating endocytosis.; PDB: 3G9H_A.
Probab=99.12 E-value=1e-08 Score=99.00 Aligned_cols=225 Identities=15% Similarity=0.241 Sum_probs=129.1
Q ss_pred eEEEEEEEEEEEEeCCCCEEEEEEEEEEEEEEEE------cCCCceEEEecCCccccccccccccccccccccceEEEeC
Q psy17615 201 AYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKL------SGMPDLTLSFMNPRLFDDVSFHPCVRFKRWEAERILSFIP 274 (459)
Q Consensus 201 i~vdV~E~v~~~~~~~G~i~~~~i~G~I~~~~~L------sG~P~~~l~ln~~~~l~d~~fH~cV~~~~f~~~~~i~F~P 274 (459)
+-.-|.|.|||.+. +|.+.++.|.|+|.+.--- +..+.+.+.|++...++.+...+..=...-.++....|-+
T Consensus 3 l~asi~E~VnA~Fk-~g~~~~v~v~GEv~ls~~~~~~~~~~~~~~l~~rl~n~~~le~i~pN~~~v~~~~~~~~~f~~n~ 81 (257)
T PF10291_consen 3 LNASITETVNAYFK-GGQLSKVKVTGEVALSYPAGISSSLTSPPPLSFRLNNFSRLEKIAPNPQFVSSSSQSDGEFWLNM 81 (257)
T ss_dssp EEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEEE--SSS-----SEEEEEEETGGGEEEEEE-TTTE--EEEETTEEEE-T
T ss_pred eeEEEEEEEEEEEE-CCcEEEEEEEEEEEEecCCChhhcccCCCcEEEEEcCcchhceeecCHhHeecCCCCCCcEEEeh
Confidence 44678999999997 5999999999999986532 2245688899888777776554433211111223355544
Q ss_pred CC--CcE--EEEEEEecCCCc--cccCeEEEEEEEEeCCEEEEEEeecCCC---C--CccceEEEEEcCCCC-ceeeEEE
Q psy17615 275 PD--GNF--RLMSYHINTQNL--VAIPLYINHNINFKQNKIDMTIGPKQTI---G--RTIENIVIEIPMPSV-VLNCTLL 342 (459)
Q Consensus 275 Pd--G~F--~Lm~Yr~~~~~~--~~lP~~v~~~~~~~~~~~e~~l~~~~~~---~--~~~~~v~I~ip~P~~-~~~~~~~ 342 (459)
+- ... ..|+|++..... ...|+.+.+.......+..+.|..+.+. . ..++||.|.+++..+ +.++...
T Consensus 82 ~~l~~~~~~~alKYqv~~~~~~~~~~Pl~l~~~Wk~e~~~tsl~l~Y~~Np~~~~~~~~L~nv~~~v~l~g~~~ts~~sk 161 (257)
T PF10291_consen 82 SALTSHLPKQALKYQVHSDPSNLSSVPLILKPVWKCEPSQTSLILDYKLNPDAFASPVPLENVVFSVPLDGGRATSAQSK 161 (257)
T ss_dssp TTTBT-E-EEEEEEEEES--------SEEEEEEEEE-SSEEEEEEEEEE-TTT--E-EEEEEEEEEEEB-SS-EEEEEES
T ss_pred HHhhhhhhhceEEEEEeccccccCCCCeEEEeEEEeCCceEEEEEEEEeChhhccccceeeeEEEEEEcCCccccccccC
Confidence 32 233 569999988542 5789999988877766666666555433 1 368999999999887 4443322
Q ss_pred eeceeeEecCcccccccccccccccCCCcceeecCCceEEEEEecccCCCCCc--ceEEEEEEecCCCCCCCCCcceEEE
Q psy17615 343 QNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKL--PNIRGSFTVQSGQENHNFNLTINVK 420 (459)
Q Consensus 343 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~W~I~~~~~~~~~--~~l~g~~~~~~~~~~~~~~~~i~v~ 420 (459)
+. ..|..+++.+.|+++.+.-.+.. ..|.|+|....... ...+|.+.
T Consensus 162 P~----------------------------g~~~~e~~ri~Wrl~el~~~~~~~~~kL~ARf~~~~~~~---~p~~v~vk 210 (257)
T PF10291_consen 162 PQ----------------------------GTWNKEKNRITWRLPELSLTSEGEGGKLIARFMTSGGPS---RPGGVEVK 210 (257)
T ss_dssp SS------------------------------B-SSS-EEEEE-SSEEEETT---EEEEEEEEESS-------SS-EEEE
T ss_pred CC----------------------------ccccCCCcEEEEECCcccccCCCCCceEEEEEECCCCCC---CCceEEEE
Confidence 11 23455899999999997642222 68889998866432 56789999
Q ss_pred EEEC-ceecccceEeEEEeec------cCCCcccceEEEeecCCC
Q psy17615 421 FTIN-QLAISGLKVNRLDMYG------EKYKPFKGVKYITTGGTF 458 (459)
Q Consensus 421 F~i~-~~t~SGl~V~~l~v~~------~~~~p~k~VrY~t~sg~y 458 (459)
|++. +.+.||+.|.-+.-.. ..|+.. -++-...+|+|
T Consensus 211 F~~~~~~~~sg~~i~~~~~~~~~dp~~~~w~~~-~~~r~~~sGkY 254 (257)
T PF10291_consen 211 FEIEGGSTLSGLGISLVYQDDEEDPPGGGWRLV-LVKRKLVSGKY 254 (257)
T ss_dssp EEE---S-SS----EEEEEESSS-TT----EE--EEEEEEEEEEE
T ss_pred EEEcCCCcccCcEEEEeecccccCCCCCcceEE-EEEEEEeeeEE
Confidence 9999 8899999888772121 123322 35556667777
No 15
>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1
Probab=96.79 E-value=0.043 Score=50.07 Aligned_cols=80 Identities=16% Similarity=0.125 Sum_probs=69.8
Q ss_pred EEEEEEEeCcEEEEEEEcCCCChHHHHHHHHHHHHHHHHhccccC-HHHHhhhHHHHHHHHHHHhhCCcccccChHHHHh
Q psy17615 54 HYLISVYRKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCS-ESVLKDNYVVVYEILDEMLDNGFPLATESNVLKE 132 (459)
Q Consensus 54 ~~~v~~~~~~l~~v~~~~~~~n~~~~~~~L~~~~~~l~~y~~~l~-e~~i~~n~~~i~~lldE~id~G~p~~t~~~~l~~ 132 (459)
..+++....++.|+++|+..+|.+++-.+|+.++..|.+.+..++ -..+...-|.|..+|+.++..|.-.-.+.+.++.
T Consensus 104 k~vvW~~v~~l~ftLVce~hEN~lLa~~~L~~~~~~l~~~~~~l~~~~e~l~k~d~i~aiL~~fLP~GQLLFlN~~~~k~ 183 (189)
T PF15001_consen 104 KIVVWLGVGSLCFTLVCEPHENRLLAENTLRLFIRHLLEHLKILSQPSEVLLKSDRILAILHRFLPHGQLLFLNHRFVKQ 183 (189)
T ss_pred cEEEeeccCCEEEEEEecCchhHHHHHHHHHHHHHHHHHHHHHhCcHHHhhhhHHHHHHHHHHhCCCCcEEEEcHHHHHH
Confidence 467889999999999999999999999999999999999997554 4677889999999999999999887777666554
Q ss_pred h
Q psy17615 133 L 133 (459)
Q Consensus 133 ~ 133 (459)
+
T Consensus 184 l 184 (189)
T PF15001_consen 184 L 184 (189)
T ss_pred H
Confidence 3
No 16
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=95.85 E-value=0.068 Score=55.49 Aligned_cols=89 Identities=17% Similarity=0.142 Sum_probs=59.8
Q ss_pred eEEEEEcCCCCEEEEeccCCCccc---chHHHHHHHhhccCCCCCCCCeEEcCCEEEEEEEeCcEEEEEEEcCCCChHHH
Q psy17615 3 HSLFIINSTSDIILEKHWKRIISR---SVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPLFV 79 (459)
Q Consensus 3 ~~i~Iln~~G~~l~~r~y~~~~~~---~~~~~f~~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~~ 79 (459)
+.+||++..||++++|+=.++.-. +++.++..-+.. .++.---+..+++++++..++.||+||++...+++..+
T Consensus 12 kh~fIlS~AGKPIysr~G~e~~l~~~~g~~~aiiS~~~~---~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~l 88 (415)
T PF03164_consen 12 KHFFILSSAGKPIYSRYGDEDKLSSLMGVIQAIISFFQS---NGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQL 88 (415)
T ss_pred CeEEEECCCCceeEEecCChHHHHHHHHHHHHHHHHHHh---CCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHHH
Confidence 579999999999999993332111 233333333322 12222345678999999999999999999998888777
Q ss_pred HHHHHHHHHHHHHhc
Q psy17615 80 IEFLDRVVTTFHDYF 94 (459)
Q Consensus 80 ~~~L~~~~~~l~~y~ 94 (459)
...|+.+...|-..+
T Consensus 89 ~~qL~~ly~qils~l 103 (415)
T PF03164_consen 89 RKQLDYLYSQILSIL 103 (415)
T ss_pred HHHHHHHHHHHHHhc
Confidence 666666555554443
No 17
>KOG0997|consensus
Probab=94.02 E-value=0.26 Score=50.83 Aligned_cols=100 Identities=14% Similarity=0.147 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCEEEEeccCCCcc---cchHHHHHHHhhccCCCCCCCCeEEcCCEEEEEEEeCcEEEEEEEcCCCChHHH
Q psy17615 3 HSLFIINSTSDIILEKHWKRIIS---RSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPLFV 79 (459)
Q Consensus 3 ~~i~Iln~~G~~l~~r~y~~~~~---~~~~~~f~~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~~ 79 (459)
+.+||+...|+++++|+-.++.- -++..+...-+.. ++..-..+..+|.++++.+++.|++||++.....+..+
T Consensus 118 khifilseaGKPiyS~~gs~e~l~stmGv~~alISf~q~---~~~~i~si~a~g~k~vfl~kspl~LvA~s~t~~Sa~qL 194 (523)
T KOG0997|consen 118 KHIFILSEAGKPIYSRHGSDEALSSTMGVMQALISFFQV---SGLAITSIHAFGNKLVFLQKSPLLLVAVSRTSQSAAQL 194 (523)
T ss_pred ceEEEEecCCCceeeecCcHHHHHHHHHHHHHHHHHHhh---CCceEEEEEecCceEEEEecCcEEEEEEcccccCHHHH
Confidence 46999999999999999765422 1333332222221 12222445678999999999999999999987777655
Q ss_pred HHHHHHHHHHHHHhccccCHHHH------hhhHHH
Q psy17615 80 IEFLDRVVTTFHDYFNDCSESVL------KDNYVV 108 (459)
Q Consensus 80 ~~~L~~~~~~l~~y~~~l~e~~i------~~n~~~ 108 (459)
..-|.. +....+..||+..+ ++|||+
T Consensus 195 ~~qL~~---ly~QIlS~LT~~ql~~if~~r~NfDL 226 (523)
T KOG0997|consen 195 LQQLLL---LYCQILSILTASQLQRIFNKRQNFDL 226 (523)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHhcccCchH
Confidence 443333 23333333444332 467775
No 18
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.
Probab=92.72 E-value=2.4 Score=36.03 Aligned_cols=90 Identities=8% Similarity=0.123 Sum_probs=59.6
Q ss_pred eeEEEEEcCCCCEEEEeccCCCcccc-----hHHHHHHHhh---ccCCCCCCCCeEEcCCEEEEEEEeCcEEEEEEEcCC
Q psy17615 2 IHSLFIINSTSDIILEKHWKRIISRS-----VCDYFFEAQN---SVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSE 73 (459)
Q Consensus 2 I~~i~Iln~~G~~l~~r~y~~~~~~~-----~~~~f~~~~~---~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~ 73 (459)
+.+|+|.|++|=+++.=...+. +.. .+..|-.... +..-.+...-|..++++.+++.....+|+..+++++
T Consensus 17 l~~I~itDrDGvpi~~v~~~~~-~~~~~~~~~~~tf~~a~~Q~~KL~lG~nk~ii~~Y~~~qvv~~~~~pl~it~ias~~ 95 (119)
T PF08923_consen 17 LQAIVITDRDGVPIAKVSSDSA-PESAMRPSLLSTFAMAIDQASKLGLGKNKSIIAYYDSYQVVQFNKLPLYITFIASSN 95 (119)
T ss_dssp EEEEEEEETTS-EEEEEE-TTS--GGGGSHHHHCCHHHHHHHHTTSSS-SEEEEEEEESSEEEEEEEETTEEEEEEEETT
T ss_pred eEEEEEECCCCcEEEEecCCCC-cchhhhhHHHHHHHHHhhcccccCCCCceEEEEEeCCEEEEEEeCCCeEEEEEecCC
Confidence 5789999999998887443322 221 1111222221 111112223456789999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHH
Q psy17615 74 VPPLFVIEFLDRVVTTFHD 92 (459)
Q Consensus 74 ~n~~~~~~~L~~~~~~l~~ 92 (459)
.|.-.++.+-+.+..+|.+
T Consensus 96 aN~G~il~l~~~L~~~l~~ 114 (119)
T PF08923_consen 96 ANTGLILSLEEELAPILNE 114 (119)
T ss_dssp S-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHHHHHH
Confidence 9999999998888888875
No 19
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=91.70 E-value=2.4 Score=35.08 Aligned_cols=90 Identities=19% Similarity=0.302 Sum_probs=54.4
Q ss_pred eeEEEEEcCCCCEEEEeccCCCccc----------chH---HHHHHHhhccCCCCCCCCeEEcCC-EEEEEEEeCcEEEE
Q psy17615 2 IHSLFIINSTSDIILEKHWKRIISR----------SVC---DYFFEAQNSVAKPEDIPPIITTPH-HYLISVYRKGVFFV 67 (459)
Q Consensus 2 I~~i~Iln~~G~~l~~r~y~~~~~~----------~~~---~~f~~~~~~~~~~~~~~pi~~~~~-~~~v~~~~~~l~~v 67 (459)
+.++||+|+.|..++.|.|.+..++ +.+ .++..++..... ...--++..+. +-.+|+..-++-||
T Consensus 3 ve~~~iINksGglifqref~~~et~lnsneyLiLastlhgV~aI~tq~~p~~g-ssg~~~l~~~~f~m~I~qT~TG~kFV 81 (134)
T COG5122 3 VEQFFIINKSGGLIFQREFGEGETELNSNEYLILASTLHGVSAILTQTIPLPG-SSGRLVLYFRNFVMTIFQTTTGTKFV 81 (134)
T ss_pred eeEEEEEecCCcEEEEEeccCCccccCcccEEEEeechhhhhhhhhhcccCCC-CCceEEEEeccEEEEEEEecCCcEEE
Confidence 6799999999999999999654222 111 112222211111 11112333444 34788889999999
Q ss_pred EEE-cCCCChHHHHHHHHHHHHHHHHhcc
Q psy17615 68 AVT-MSEVPPLFVIEFLDRVVTTFHDYFN 95 (459)
Q Consensus 68 ~~~-~~~~n~~~~~~~L~~~~~~l~~y~~ 95 (459)
+++ ....|.++- |+++..+..+|.-
T Consensus 82 ~~~~k~t~na~~q---l~kiY~lYsdYV~ 107 (134)
T COG5122 82 FVAEKRTVNALFQ---LQKIYSLYSDYVT 107 (134)
T ss_pred EEecCCchhHHHH---HHHHHHHHHHHhh
Confidence 999 445554443 6777777777763
No 20
>KOG0781|consensus
Probab=90.22 E-value=3.9 Score=42.65 Aligned_cols=113 Identities=14% Similarity=0.078 Sum_probs=72.5
Q ss_pred CeeEEEEEcCCCCEEEEeccCCCcccchHHHHHHHhhccCCCCCCCCeEEcCCEEEEEEEeCc--EEEEEEEcCCCChHH
Q psy17615 1 MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKG--VFFVAVTMSEVPPLF 78 (459)
Q Consensus 1 MI~~i~Iln~~G~~l~~r~y~~~~~~~~~~~f~~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~--l~~v~~~~~~~n~~~ 78 (459)
||..|.|+++.|-+|...+=.+..-+..+.+|.+.+....+.+... +..+.+.+=|...++ +.|+++-..--+-..
T Consensus 1 Mld~faIFtkgG~vLw~~~~~~~~~~~~in~lI~~~ll~er~~~~~--~~~~~yTlk~q~~N~~~lvfvvvfqki~~L~y 78 (587)
T KOG0781|consen 1 MLDQFAIFTKGGLVLWCYQEVGDNLKGPINALIRSVLLSERGGVNS--FTFEAYTLKYQLDNQYSLVFVVVFQKILTLTY 78 (587)
T ss_pred CcceeeeecCCcEEEEEecccchhccchHHHHHHHHHHHhhcCccc--CchhheeEeeeecCCccEEEEEEEeccchhhh
Confidence 9999999999998887665443322344556665555432222222 555667777777766 455555555555566
Q ss_pred HHHHHHHHHHHHHHhccccCHHHHhhhH-HHHHHHHHH
Q psy17615 79 VIEFLDRVVTTFHDYFNDCSESVLKDNY-VVVYEILDE 115 (459)
Q Consensus 79 ~~~~L~~~~~~l~~y~~~l~e~~i~~n~-~~i~~lldE 115 (459)
+-.+|....+++.+-|+..+-..++.|+ +...++|++
T Consensus 79 v~~ll~~v~~~f~e~~~~~~~~~l~~n~~~~~~e~lk~ 116 (587)
T KOG0781|consen 79 VDKLLNDVLNLFREKYDTQSALSLLNNTFDFQEELLKL 116 (587)
T ss_pred HHHHHHHHHHHHHHHhccchHHHhhhhhHHHHHHHHHH
Confidence 6677777777777777777777788884 455555544
No 21
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=89.30 E-value=2.6 Score=32.99 Aligned_cols=49 Identities=12% Similarity=0.271 Sum_probs=42.2
Q ss_pred CeEEcCCEEEEEEEeCcEEEEEEEcCCCChHHHHHHHHHHHHHHHHhcc
Q psy17615 47 PIITTPHHYLISVYRKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFN 95 (459)
Q Consensus 47 pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~~~~~L~~~~~~l~~y~~ 95 (459)
-.++.+++.|-+...+++.++|+|+.+-+.-.++.||..+.+-+..-++
T Consensus 17 ~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~ 65 (83)
T PF13774_consen 17 MSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYG 65 (83)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCT
T ss_pred EEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcC
Confidence 4566788888887899999999999999999999999999888888777
No 22
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=88.81 E-value=6 Score=34.62 Aligned_cols=92 Identities=23% Similarity=0.291 Sum_probs=52.8
Q ss_pred eeEEEEEcCCCCEEEEeccCCCc----ccc-------------hHHHHHHHhhccCC-C--CCCCC--eEEcCCEE-EEE
Q psy17615 2 IHSLFIINSTSDIILEKHWKRII----SRS-------------VCDYFFEAQNSVAK-P--EDIPP--IITTPHHY-LIS 58 (459)
Q Consensus 2 I~~i~Iln~~G~~l~~r~y~~~~----~~~-------------~~~~f~~~~~~~~~-~--~~~~p--i~~~~~~~-~v~ 58 (459)
|.+++|+|+.|..|.+|.|.... ++. .+.+|-.++..... . ..... -++++.++ .+|
T Consensus 1 IyslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~ 80 (142)
T PF04099_consen 1 IYSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCF 80 (142)
T ss_dssp EEEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEE
T ss_pred CeEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEEEEeCCEEEEEE
Confidence 68999999999999999997643 110 12223333332110 0 01122 34566665 566
Q ss_pred EEeCcEEEEEEEcCCCChHHHHHHHHHHHHHHHHhc
Q psy17615 59 VYRKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYF 94 (459)
Q Consensus 59 ~~~~~l~~v~~~~~~~n~~~~~~~L~~~~~~l~~y~ 94 (459)
.-..++-||++++.+... ..=++++.+.++.-+|.
T Consensus 81 eT~TGlKFvl~td~~~~~-~~~~l~~~~~~lY~dyV 115 (142)
T PF04099_consen 81 ETPTGLKFVLITDPNVPS-LRDELLRIYYELYVDYV 115 (142)
T ss_dssp E-TTS-EEEEEE-TTCCH-CHHHHHHHHHHHHHHHH
T ss_pred EcCcCcEEEEEecCCCcc-HHHHHHHHHHHHHHHHH
Confidence 778999999999988754 34446788888887775
No 23
>KOG0859|consensus
Probab=80.06 E-value=49 Score=30.48 Aligned_cols=87 Identities=11% Similarity=0.149 Sum_probs=62.0
Q ss_pred EcCCCCEEEEeccCCCcc-cchHHHHHHHhhccCCCCCCCCeEEcCCEEEEEEEeCcEEEEEEEcCCCChHHHHHHHHHH
Q psy17615 8 INSTSDIILEKHWKRIIS-RSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPLFVIEFLDRV 86 (459)
Q Consensus 8 ln~~G~~l~~r~y~~~~~-~~~~~~f~~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~~~~~L~~~ 86 (459)
+=.+|-++++.+=.-..+ .++.+...+++... ++..--+..|++.|-|...+++.++|+++...--...+.||.++
T Consensus 7 ~VARGTvvLaeft~~~gNf~sva~qiL~klp~~---~n~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaFLe~I 83 (217)
T KOG0859|consen 7 FVARGTVILAEFTEFSGNFSSIAAQILQKLPSS---SNSKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAFLERI 83 (217)
T ss_pred EEecceEEEEeeeeccCCHHHHHHHHHHhCCCC---CCCceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHHHHHH
Confidence 336899999876321111 23344455555441 22234566899999999999999999999888888999999999
Q ss_pred HHHHHHhcccc
Q psy17615 87 VTTFHDYFNDC 97 (459)
Q Consensus 87 ~~~l~~y~~~l 97 (459)
-+-+..-+|.-
T Consensus 84 k~~F~k~YG~~ 94 (217)
T KOG0859|consen 84 KEDFKKRYGGG 94 (217)
T ss_pred HHHHHHHhccc
Confidence 98888877743
No 24
>KOG3369|consensus
Probab=78.95 E-value=22 Score=31.97 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=34.1
Q ss_pred eEEcCCE-EEEEEEeCcEEEEEEEcCCCChHHHHHHHHHHHHHHHHhc
Q psy17615 48 IITTPHH-YLISVYRKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYF 94 (459)
Q Consensus 48 i~~~~~~-~~v~~~~~~l~~v~~~~~~~n~~~~~~~L~~~~~~l~~y~ 94 (459)
+++.+.. .+||+..-++-||++++.-.+ .+=.+|+++.++..+|-
T Consensus 125 ~LetdtF~l~~~QTlTG~KFVvis~~~~~--~aD~lLrKiYelYsDyv 170 (199)
T KOG3369|consen 125 VLETDTFTLHIFQTLTGTKFVVIAEPGTQ--GADSLLRKIYELYSDYV 170 (199)
T ss_pred EEEeccEEEEEEEccCCcEEEEEecCCch--hHHHHHHHHHHHHHHHh
Confidence 4555654 488999999999999987652 34457888888888875
No 25
>PF03504 Chlam_OMP6: Chlamydia cysteine-rich outer membrane protein 6; InterPro: IPR003506 Three cysteine-rich proteins (also believed to be lipoproteins) make up the extracellular matrix of the Chlamydial outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. As these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism. The largest of these is the major outer membrane protein (MOMP), and constitutes around 60% of the total protein for the membrane []. OMP6 is the second largest, with a molecular mass of 58kDa, while the OMP3 protein is ~15kDa []. MOMP is believed to elicit the strongest immune response, and has recently been linked to heart disease through its sequence similarity to a murine heart-muscle specific alpha myosin []. The OMP6 family plays a structural role in the outer membrane during the EB stage of the Chlamydial cell, and different biovars show a small, yet highly significant, change at peptide charge level []. Members of this family include Chlamydia trachomatis, Chlamydia pneumoniae and Chlamydia psittaci.; GO: 0005201 extracellular matrix structural constituent
Probab=63.69 E-value=22 Score=27.90 Aligned_cols=53 Identities=21% Similarity=0.384 Sum_probs=32.9
Q ss_pred EEEEEEeecCCCCCccceEEEEEcCCCCceeeEEEeeceeeEecCcccccccccccccccCCCcceeecCCceEEEEEec
Q psy17615 308 KIDMTIGPKQTIGRTIENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVG 387 (459)
Q Consensus 308 ~~e~~l~~~~~~~~~~~~v~I~ip~P~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~W~I~ 387 (459)
-+|+.+.- .+.+-||.|+=.+|..+. +..+.-.++ ....+.++|+|+
T Consensus 33 PiEi~a~g----k~DcvnVviTqqLPce~e---FV~SdPett--------------------------p~~D~kLVW~Ig 79 (95)
T PF03504_consen 33 PIEILAQG----KKDCVNVVITQQLPCEVE---FVRSDPETT--------------------------PTPDGKLVWKIG 79 (95)
T ss_pred CEEEEEEc----ccceeEEEEeecCCcceE---EEecCCccc--------------------------cCCCCEEEEEec
Confidence 45554432 346889999999998643 222211111 015788999999
Q ss_pred ccCCCCC
Q psy17615 388 RIDIENK 394 (459)
Q Consensus 388 ~~~~~~~ 394 (459)
++.. |.
T Consensus 80 ~l~~-G~ 85 (95)
T PF03504_consen 80 RLGQ-GE 85 (95)
T ss_pred cccC-Cc
Confidence 9976 43
No 26
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=59.86 E-value=98 Score=26.90 Aligned_cols=72 Identities=10% Similarity=0.197 Sum_probs=34.9
Q ss_pred CeeEEEEEcCCCCEEEEeccCC-CcccchHHHHHHHhhccCCCCC----CCCeEE-------cCCEE-EEEEE-eCcEEE
Q psy17615 1 MIHSLFIINSTSDIILEKHWKR-IISRSVCDYFFEAQNSVAKPED----IPPIIT-------TPHHY-LISVY-RKGVFF 66 (459)
Q Consensus 1 MI~~i~Iln~~G~~l~~r~y~~-~~~~~~~~~f~~~~~~~~~~~~----~~pi~~-------~~~~~-~v~~~-~~~l~~ 66 (459)
||..+.|++.+|++|+.-.=-+ ......+.+|..++.+.+...+ ..-+.. .++.. ++|+. .-.|||
T Consensus 1 MfdQlaIFTpqGqvLyqyN~~gKKFsE~QiN~FIs~lItsP~~~~e~~~~~k~~~i~s~~~~~~~f~~mfh~sKQPeLy~ 80 (148)
T PF09201_consen 1 MFDQLAIFTPQGQVLYQYNCLGKKFSETQINAFISHLITSPVTKKEDSSKSKFLTISSEKKNSRSFSAMFHISKQPELYY 80 (148)
T ss_dssp ---EEEEE-TT-BEEEEEETTS----HHHHHHHHHHHHHS---GGGTT--EEEEE-----------EEEEEEETTTTEEE
T ss_pred CcceeEEeccCceEEEEecccchHHHHHHHHHHHHHHhcCCCcccCCCcceeeEEecccccCCCChheeeeecCCCcEEE
Confidence 9999999999999998643222 1223456778888776432111 112222 33544 33433 356999
Q ss_pred EEEEcC
Q psy17615 67 VAVTMS 72 (459)
Q Consensus 67 v~~~~~ 72 (459)
|+.-..
T Consensus 81 VvTyae 86 (148)
T PF09201_consen 81 VVTYAE 86 (148)
T ss_dssp EEEESS
T ss_pred EEEecc
Confidence 887754
No 27
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=51.07 E-value=39 Score=24.03 Aligned_cols=32 Identities=22% Similarity=0.189 Sum_probs=26.2
Q ss_pred CCEEEEEEeecCCCCCccceEEEEEcCCCCce
Q psy17615 306 QNKIDMTIGPKQTIGRTIENIVIEIPMPSVVL 337 (459)
Q Consensus 306 ~~~~e~~l~~~~~~~~~~~~v~I~ip~P~~~~ 337 (459)
+..++|++.++......+.+|.|+=++|.+..
T Consensus 11 Gd~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~ 42 (53)
T TIGR01451 11 GDTITYTITVTNNGNVPATNVVVTDILPSGTT 42 (53)
T ss_pred CCEEEEEEEEEECCCCceEeEEEEEcCCCCCE
Confidence 66899999887555567899999999998754
No 28
>KOG0862|consensus
Probab=49.56 E-value=63 Score=30.22 Aligned_cols=48 Identities=15% Similarity=0.344 Sum_probs=42.9
Q ss_pred EEcCCEEEEEEEeCcEEEEEEEcCCCChHHHHHHHHHHHHHHHHhccc
Q psy17615 49 ITTPHHYLISVYRKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFND 96 (459)
Q Consensus 49 ~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~~~~~L~~~~~~l~~y~~~ 96 (459)
++.+++.|-|.-.+++++.++|+.+-+--+++.+|+.+.+-+..-++.
T Consensus 54 ietg~f~fHfli~~~Vcylvicd~~yP~kLAF~YLedL~~EF~~~~~~ 101 (216)
T KOG0862|consen 54 IETGPFVFHFLIESGVCYLVICDKSYPRKLAFSYLEDLAQEFDKSYGK 101 (216)
T ss_pred cccCCeEEEEEecCCEEEEEEecCCCcHHHHHHHHHHHHHHHHHhccc
Confidence 456778888999999999999999999999999999999998888873
No 29
>KOG0861|consensus
Probab=34.40 E-value=2.7e+02 Score=25.28 Aligned_cols=122 Identities=16% Similarity=0.239 Sum_probs=63.6
Q ss_pred eeEEEEEcCCCCE--EEEeccC----CCcccchHHHHH----HHhhccCCCCCCCCeEEcCCEEEEEEEeCcEEEEEEEc
Q psy17615 2 IHSLFIINSTSDI--ILEKHWK----RIISRSVCDYFF----EAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTM 71 (459)
Q Consensus 2 I~~i~Iln~~G~~--l~~r~y~----~~~~~~~~~~f~----~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~ 71 (459)
|.++.|++..+.. +++..+. +.+.|+...+|. +.+..+...+....+-.-+-...+|.+.++|.-|++++
T Consensus 3 i~sl~V~~~~~~~~~ll~~a~dls~FsfFqRssV~Efm~F~sktvaeRt~~g~rqsvk~~~Y~~h~yvrndgL~~V~~~D 82 (198)
T KOG0861|consen 3 IYSLSVLHKGTSDVKLLKTASDLSSFSFFQRSSVQEFMTFISKTVAERTGPGQRQSVKHEEYLVHVYVRNDGLCGVLIAD 82 (198)
T ss_pred eEEEEEEeeCCcchhhhhhhcccccccceeeccHHHHHHHHHHHHHHhcCcccccccccceeEEEEEEecCCeeEEEEec
Confidence 6678888875432 2222211 123455555443 22333222222223322222346777778999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhccccCHHH--HhhhHHHHHHHHHHHhh-CCcccccC
Q psy17615 72 SEVPPLFVIEFLDRVVTTFHDYFNDCSESV--LKDNYVVVYEILDEMLD-NGFPLATE 126 (459)
Q Consensus 72 ~~~n~~~~~~~L~~~~~~l~~y~~~l~e~~--i~~n~~~i~~lldE~id-~G~p~~t~ 126 (459)
.+-+--.++.+|++ +|++|......+. +..+-++=|-.||+.++ +-.|-+-|
T Consensus 83 ~eYP~rvA~tLL~k---vld~~~~k~~~~~W~~~~~~~~~~~~L~~~l~kyqdP~ead 137 (198)
T KOG0861|consen 83 DEYPVRVAFTLLNK---VLDEFTTKVPATQWPVGETADLSYPYLDTLLSKYQDPAEAD 137 (198)
T ss_pred CcCchhHHHHHHHH---HHHHHhhcCcccccCcCCCcCCCchhHHHHHHHhcChhhhC
Confidence 88777888888776 6666644322111 33333344445555553 44555444
No 30
>KOG0647|consensus
Probab=28.66 E-value=2e+02 Score=28.48 Aligned_cols=101 Identities=19% Similarity=0.265 Sum_probs=64.6
Q ss_pred EEEEEEeCCCCEEEEEEEEEEEEEEEEcCCCceEEEecCCc----------cccccccccccc-cccccccceEEEeCCC
Q psy17615 208 EVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNPR----------LFDDVSFHPCVR-FKRWEAERILSFIPPD 276 (459)
Q Consensus 208 ~v~~~~~~~G~i~~~~i~G~I~~~~~LsG~P~~~l~ln~~~----------~l~d~~fH~cV~-~~~f~~~~~i~F~PPd 276 (459)
.|.|.-|++|. .-..|.|++.+..-..|+|.-.+.|.-.+ .+.++.|||--. +..--+|.+++|=.-|
T Consensus 203 ~va~f~d~~~~-alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 203 CVACFQDKDGF-ALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred EEEEEecCCce-EeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecch
Confidence 67777888888 66789999999988899998788774111 244688998221 1112245666666666
Q ss_pred CcEEEEEEEecCCCccccCeEEEEEEEEeCCEEEEEEee
Q psy17615 277 GNFRLMSYHINTQNLVAIPLYINHNINFKQNKIDMTIGP 315 (459)
Q Consensus 277 G~F~Lm~Yr~~~~~~~~lP~~v~~~~~~~~~~~e~~l~~ 315 (459)
.+-.|..|..-. .||.. |.+.-.|.-|-|-+..
T Consensus 282 ar~kLk~s~~~~-----qpItc-c~fn~~G~ifaYA~gY 314 (347)
T KOG0647|consen 282 ARTKLKTSETHP-----QPITC-CSFNRNGSIFAYALGY 314 (347)
T ss_pred hhhhhhccCcCC-----Cccce-eEecCCCCEEEEEeec
Confidence 666676665432 35544 4455446667777654
No 31
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=26.49 E-value=1.8e+02 Score=21.92 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=26.4
Q ss_pred CCEEEEEEeecCCCCCccceEEEEEcCCCCce
Q psy17615 306 QNKIDMTIGPKQTIGRTIENIVIEIPMPSVVL 337 (459)
Q Consensus 306 ~~~~e~~l~~~~~~~~~~~~v~I~ip~P~~~~ 337 (459)
+..++|+|.++-.....+.||.|.=++|.+..
T Consensus 40 Gd~v~ytitvtN~G~~~a~nv~v~D~lp~g~~ 71 (76)
T PF01345_consen 40 GDTVTYTITVTNTGPAPATNVVVTDTLPAGLT 71 (76)
T ss_pred CCEEEEEEEEEECCCCeeEeEEEEEcCCCCCE
Confidence 67899999887555567999999999998754
No 32
>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin). It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....
Probab=25.18 E-value=3.9e+02 Score=22.02 Aligned_cols=35 Identities=11% Similarity=0.178 Sum_probs=27.1
Q ss_pred EEEEEeCcEEEEEEEcCCCChHHHHHHHHHHHHHH
Q psy17615 56 LISVYRKGVFFVAVTMSEVPPLFVIEFLDRVVTTF 90 (459)
Q Consensus 56 ~v~~~~~~l~~v~~~~~~~n~~~~~~~L~~~~~~l 90 (459)
++-.+.+..++|+....+.+|-.+.+...++++.|
T Consensus 87 ~~i~kt~~~ivIg~y~~~~~~~~~~~~v~~lA~yL 121 (121)
T PF00235_consen 87 IIIVKTKQAIVIGMYDESIQPGNCNKAVEKLADYL 121 (121)
T ss_dssp EEEEECSSEEEEEEEETTSTHHHHHHHHHHHHHHH
T ss_pred EEEEECCCEEEEEEeCCCCCHHHHHHHHHHHHhhC
Confidence 44445567788888888899999988888888765
No 33
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=24.68 E-value=1e+02 Score=23.44 Aligned_cols=31 Identities=13% Similarity=0.254 Sum_probs=18.7
Q ss_pred CEEEEEEeecCCCCCccceEEEEEcCCCCce
Q psy17615 307 NKIDMTIGPKQTIGRTIENIVIEIPMPSVVL 337 (459)
Q Consensus 307 ~~~e~~l~~~~~~~~~~~~v~I~ip~P~~~~ 337 (459)
..+.+++.++......+.++.+++-+|.+|.
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~ 35 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWT 35 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCcc
Confidence 3566666665444457899999999999998
No 34
>PF07151 DUF1391: Protein of unknown function (DUF1391); InterPro: IPR009821 This family consists of several Enterobacterial proteins of around 50 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi where they are often known as YdfA. The function of this family is unknown.
Probab=23.75 E-value=82 Score=21.46 Aligned_cols=18 Identities=33% Similarity=0.591 Sum_probs=14.3
Q ss_pred EEeCCCCcEEEEEEEecC
Q psy17615 271 SFIPPDGNFRLMSYHINT 288 (459)
Q Consensus 271 ~F~PPdG~F~Lm~Yr~~~ 288 (459)
.|---||.|+.|.|.-+.
T Consensus 15 vfpn~dgtftamtytksk 32 (49)
T PF07151_consen 15 VFPNQDGTFTAMTYTKSK 32 (49)
T ss_pred EeeCCCCcEEEEEEeecc
Confidence 456679999999998643
No 35
>KOG2265|consensus
Probab=21.76 E-value=1.8e+02 Score=26.38 Aligned_cols=16 Identities=38% Similarity=0.752 Sum_probs=13.9
Q ss_pred CccceEEEEEcCCCCc
Q psy17615 321 RTIENIVIEIPMPSVV 336 (459)
Q Consensus 321 ~~~~~v~I~ip~P~~~ 336 (459)
..+++|.|.||+|+++
T Consensus 25 QtL~EV~i~i~vp~~~ 40 (179)
T KOG2265|consen 25 QTLEEVEIQIPVPPGT 40 (179)
T ss_pred eehhheEEEeecCCCC
Confidence 3688999999999987
No 36
>cd08339 DED_DEDD-like Death Effector Domain of DEDD and DEDD2. Death Effector Domain (DED) found in DEDD and DEDD2. Both proteins have a single N-terminal DED and a long C-terminal portion with no known domains. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD and DEDD2 can bind to themselves, to each other, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes.
Probab=21.51 E-value=1.3e+02 Score=23.92 Aligned_cols=36 Identities=11% Similarity=0.049 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhccccCHHHHhhhHHHHHHHHHHHhhCCcccc
Q psy17615 82 FLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPLA 124 (459)
Q Consensus 82 ~L~~~~~~l~~y~~~l~e~~i~~n~~~i~~lldE~id~G~p~~ 124 (459)
.||++.+++.+ .+++.++ ..+.++|+|+++++.|+.
T Consensus 4 SLH~mF~iVG~---qlT~~Dv----~vLsFL~~e~~~~~~~~~ 39 (97)
T cd08339 4 SLHRMFDIVGT---HLTHRDV----RVLSFLFVDVIDDYERGM 39 (97)
T ss_pred cHHHHHHHHhh---hcchhhH----HHHHHHHHHhcccccCCC
Confidence 46777776653 4666654 467789999999888885
No 37
>PRK09750 hypothetical protein; Provisional
Probab=20.19 E-value=71 Score=23.36 Aligned_cols=13 Identities=23% Similarity=0.217 Sum_probs=11.0
Q ss_pred ccCCCcccceEEE
Q psy17615 440 GEKYKPFKGVKYI 452 (459)
Q Consensus 440 ~~~~~p~k~VrY~ 452 (459)
.++..|.+|+||.
T Consensus 12 KpGg~P~~W~r~s 24 (64)
T PRK09750 12 KEGGTPTNWTRYS 24 (64)
T ss_pred CCCCCccceeEec
Confidence 4578999999996
Done!