Query psy17615
Match_columns 459
No_of_seqs 171 out of 1321
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 18:35:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_M AP-2 complex subunit MU 100.0 4.4E-93 1.5E-97 736.7 47.3 402 1-459 1-432 (435)
2 1w63_M Adaptor-related protein 100.0 1.2E-92 4.2E-97 730.9 39.8 400 1-459 2-419 (423)
3 1i31_A Clathrin coat assembly 100.0 2.8E-67 9.6E-72 520.1 29.8 281 123-459 1-311 (314)
4 4en2_M AP-1 complex subunit MU 100.0 6.4E-64 2.2E-68 483.9 26.5 244 188-459 1-262 (266)
5 3ml6_A Chimeric complex betwee 100.0 1.8E-61 6.3E-66 488.8 30.4 247 184-459 102-382 (385)
6 3l81_A AP-4 complex subunit MU 100.0 8.5E-61 2.9E-65 469.3 26.0 247 185-459 21-298 (301)
7 1w63_Q Adapter-related protein 100.0 1E-32 3.5E-37 245.9 15.7 140 1-142 1-143 (158)
8 2vgl_S AP-2 complex subunit si 100.0 1E-31 3.5E-36 235.6 14.1 135 1-137 1-139 (142)
9 3tjz_C Coatomer subunit zeta-1 100.0 6.8E-30 2.3E-34 225.6 16.3 133 1-138 12-150 (153)
10 3g9h_A Suppressor of yeast pro 98.8 3.6E-06 1.2E-10 81.6 25.8 202 198-440 67-302 (328)
11 2nut_C Vesicle-trafficking pro 92.1 1.2 4E-05 40.0 10.9 94 1-95 2-101 (196)
12 4b93_A Vesicle-associated memb 90.8 1.5 5.2E-05 39.1 10.2 84 10-96 10-93 (189)
13 2vx8_A Nucleoporin-like protei 90.8 1 3.5E-05 39.4 8.8 49 48-96 87-135 (169)
14 3cue_A Transport protein parti 89.8 4.1 0.00014 36.9 12.1 24 1-24 2-25 (219)
15 4afi_A AP-3 complex subunit de 88.4 3.9 0.00013 35.9 10.7 82 11-95 63-144 (173)
16 3cpt_A Mitogen-activated prote 88.0 3.5 0.00012 34.7 9.5 91 2-92 38-135 (143)
17 2fh5_A Signal recognition part 87.1 5.3 0.00018 35.3 10.7 93 1-95 10-104 (185)
18 3bw6_A Synaptobrevin homolog Y 84.5 8.8 0.0003 32.4 10.6 93 2-95 7-110 (144)
19 1nrj_A Signal recognition part 84.3 11 0.00037 31.6 10.5 72 1-72 1-93 (158)
20 2j3t_C Trafficking protein par 82.5 4.5 0.00015 34.3 7.9 89 1-92 2-107 (145)
21 3kyq_A YKT6, synaptobrevin hom 77.5 18 0.00063 32.2 10.6 93 2-95 4-107 (199)
22 2j3w_A Sedlin, trafficking pro 76.4 18 0.00061 30.3 9.7 87 2-93 6-111 (142)
23 3cue_C Transport protein parti 70.9 11 0.00038 32.4 7.1 88 1-93 2-114 (159)
24 2wl8_A Peroxisomal biogenesis 24.7 1.3E+02 0.0046 24.5 5.7 20 103-122 88-107 (126)
25 2k8q_A Protein SHQ1; beta-sand 22.2 2.1E+02 0.0072 23.6 6.4 25 367-391 59-83 (134)
26 3eud_A Protein SHQ1; CS domain 20.6 3.2E+02 0.011 21.8 7.0 25 367-391 73-97 (115)
No 1
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=4.4e-93 Score=736.75 Aligned_cols=402 Identities=27% Similarity=0.513 Sum_probs=351.9
Q ss_pred CeeEEEEEcCCCCEEEEeccCCCcccchHHHHHHHhhccCCCCCCCCeEEcCCEEEEEEEeCcEEEEEEEcCCCChHHHH
Q psy17615 1 MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPLFVI 80 (459)
Q Consensus 1 MI~~i~Iln~~G~~l~~r~y~~~~~~~~~~~f~~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~~~ 80 (459)
||++|||+|++|+++++|+|+++.++..++.|++.+.... ....+|++++++++|+|+++++|||+++++.++||++++
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~-~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~l 79 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHAR-QQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVF 79 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSCCHHHHHHHHHHTTTCS-SCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHH
T ss_pred CeEEEEEECCCCCEEEEEecCCCCChhHHHHHHHHHhccc-cCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHH
Confidence 9999999999999999999999888888899999888642 236799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCHHHHhhhHHHHHHHHHHHhhCCcccccChHHHHhhcCCCchhhhhhccccCCCCcccCCCCC
Q psy17615 81 EFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPLATESNVLKELIKPPNILRTIANTMTGGSNVSSILPSG 160 (459)
Q Consensus 81 ~~L~~~~~~l~~y~~~l~e~~i~~n~~~i~~lldE~id~G~p~~t~~~~l~~~i~~~s~~~~~~~~~~~~~~~~~~~~~~ 160 (459)
++||+|+++|++|||+++|++|++||++||++||||+|+|+|++|++++|++++.++++..++.. ..+ ....|
T Consensus 80 e~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~-~~~----~~~~~-- 152 (435)
T 2vgl_M 80 EFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQT-KEE----QSQIT-- 152 (435)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC------------------
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhccccccccccc-ccc----ccccc--
Confidence 99999999999999999999999999999999999999999999999999999999998665421 000 00111
Q ss_pred CCCCCccccCCCCCccccCCCCCccccccccCCcccccceeEEEEEEEEEEEEeCCCCEEEEEEEEEEEEEEEEcCCCce
Q psy17615 161 QLSSVPWRRTGGSNVSSILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDL 240 (459)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~~nEi~vdV~E~v~~~~~~~G~i~~~~i~G~I~~~~~LsG~P~~ 240 (459)
.+..++++||+.|++|++|||||||+|+++++++++|.+++++|.|.|.|+|+|+|||+|
T Consensus 153 --------------------~~~~~~i~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~ 212 (435)
T 2vgl_M 153 --------------------SQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPEC 212 (435)
T ss_dssp --------------------------CCSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEE
T ss_pred --------------------cccccccccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeE
Confidence 122346899999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCC---------------------ccccccccccccccccccccceEEEeCCCCcEEEEEEEecCCCccccCeEEE
Q psy17615 241 TLSFMNP---------------------RLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYIN 299 (459)
Q Consensus 241 ~l~ln~~---------------------~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~~lP~~v~ 299 (459)
+|+||++ ..++||+|||||++++|+++|+|+|+||||+|+||+||++.+ ..+||.+.
T Consensus 213 ~l~ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~--~~~P~~i~ 290 (435)
T 2vgl_M 213 KFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKD--IILPFRVI 290 (435)
T ss_dssp EEEECSSSCC-----------------CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEEEEEECSS--CCCSEEEE
T ss_pred EEEeCchhhcccccccccccccccccCceEccccccceeecHhHhccCceEEEECCCCcEEEEEEEecCC--cCCCeEEE
Confidence 9999864 357899999999999999999999999999999999999875 57999999
Q ss_pred EEEEEe-CCEEEEEEeecCCCCC--ccceEEEEEcCCCCceeeEEEeeceeeEecCcccccccccccccccCCCcceeec
Q psy17615 300 HNINFK-QNKIDMTIGPKQTIGR--TIENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFD 376 (459)
Q Consensus 300 ~~~~~~-~~~~e~~l~~~~~~~~--~~~~v~I~ip~P~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 376 (459)
||++.. ++++||+++++++++. .++||.|+||+|+.+.++.+.++.|+++|++
T Consensus 291 ~~~~~~~~~~ve~~l~~~~~~~~~~~~~~V~I~IP~P~~~~~~~~~~~~G~~~y~~------------------------ 346 (435)
T 2vgl_M 291 PLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKA------------------------ 346 (435)
T ss_dssp EEEECCTTTEEEEEEEEEECSCTTSEEEEEEEEEECCSSCCCEEEEESSSEEEEET------------------------
T ss_pred EEEEecCCCEEEEEEEEeCCCCCCceeeEEEEEEECCCCCCCceEEecceeEEEcc------------------------
Confidence 999875 4689999998877753 5999999999999998888888877776655
Q ss_pred CCceEEEEEecccCCCCCcceEEEEEEecCCC-CCCCCCcceEEEEEECceecccceEeEEEeecc-----CCCcccceE
Q psy17615 377 PIKKILTWDVGRIDIENKLPNIRGSFTVQSGQ-ENHNFNLTINVKFTINQLAISGLKVNRLDMYGE-----KYKPFKGVK 450 (459)
Q Consensus 377 ~~~~~l~W~I~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~i~v~F~i~~~t~SGl~V~~l~v~~~-----~~~p~k~Vr 450 (459)
++++++|+|+++++ +++++++|++++.+.. ..++.++||+|+|++| +++||++|++|++.++ +|+|+||||
T Consensus 347 -~~~~l~W~I~~~~~-~~~~~l~~~~~l~~~~~~~~~~~~pi~v~F~i~-~t~Sgl~V~~l~v~~~~~~~~~y~~~kwVr 423 (435)
T 2vgl_M 347 -SENAIVWKIKRMAG-MKESQISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVR 423 (435)
T ss_dssp -TTTEEEEEEEEEET-TCEEEEEEEEECCCCSCSCCCCCCCEEEEEEES-SCTTCCCEEEEEEECSSSSCBGGGSEEEEE
T ss_pred -CCCEEEEEeccCCC-CCCEEEEEEEEecCCCcCcccCCCcEEEEEEEE-ecccccEEEEEEEeccccccCCCCCcCceE
Confidence 99999999999998 7899999999998753 3456689999999999 9999999999999875 799999999
Q ss_pred EEeecCCCC
Q psy17615 451 YITTGGTFQ 459 (459)
Q Consensus 451 Y~t~sg~y~ 459 (459)
|+|+||+|+
T Consensus 424 Y~t~sg~y~ 432 (435)
T 2vgl_M 424 YIGRSGIYE 432 (435)
T ss_dssp EEEEEEEEE
T ss_pred EEEeCCeEE
Confidence 999999996
No 2
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=1.2e-92 Score=730.89 Aligned_cols=400 Identities=30% Similarity=0.555 Sum_probs=352.5
Q ss_pred CeeEEEEEcCCCCEEEEeccCCCcccchHHHHHHHhhccCCCCCCCCeEEcCCEEEEEEEeCcEEEEEEEcCCCChHHHH
Q psy17615 1 MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPLFVI 80 (459)
Q Consensus 1 MI~~i~Iln~~G~~l~~r~y~~~~~~~~~~~f~~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~~~ 80 (459)
||+++||+|++|+++++|+|+++.++..+++|++.+......+..+|++++++++|+|+++++|||+++++.++||++++
T Consensus 2 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~l 81 (423)
T 1w63_M 2 SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLVF 81 (423)
T ss_dssp CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHHH
T ss_pred ceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHH
Confidence 99999999999999999999998888888999999876321145789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCHHHHhhhHHHHHHHHHHHhhCCcccccChHHHHhhcCCCchhhhhhccccCCCCcccCCCCC
Q psy17615 81 EFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPLATESNVLKELIKPPNILRTIANTMTGGSNVSSILPSG 160 (459)
Q Consensus 81 ~~L~~~~~~l~~y~~~l~e~~i~~n~~~i~~lldE~id~G~p~~t~~~~l~~~i~~~s~~~~~~~~~~~~~~~~~~~~~~ 160 (459)
++||+|+++|++|||.++|++|++||++||++||||+|+|+|++|++++|+++|.++++.- +. .....|
T Consensus 82 e~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~---~~------~~~~~~-- 150 (423)
T 1w63_M 82 SFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHKL---ET------GAPRPP-- 150 (423)
T ss_dssp HHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCCC---CC------C-------
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCccc---cc------cccCCc--
Confidence 9999999999999999999999999999999999999999999999999999999998751 10 000011
Q ss_pred CCCCCccccCCCCCccccCCCCCccccccccCCcccccceeEEEEEEEEEEEEeCCCCEEEEEEEEEEEEEEEEcCCCce
Q psy17615 161 QLSSVPWRRTGGSNVSSILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDL 240 (459)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~~nEi~vdV~E~v~~~~~~~G~i~~~~i~G~I~~~~~LsG~P~~ 240 (459)
.+..++++||+.|++|++|||||||+|+++++++++|.+++++|.|.|.|+|+|+|||+|
T Consensus 151 --------------------~~~~~~i~wr~~g~~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~ 210 (423)
T 1w63_M 151 --------------------ATVTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPEL 210 (423)
T ss_dssp --------------------------CCSSCSSCCCSSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEECSSCCEE
T ss_pred --------------------ccccCCCCccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEeCCCCeE
Confidence 122346899999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCc-------------cccccccccccccccccccceEEEeCCCCcEEEEEEEecCCCccccCeEEEEEEEEe-C
Q psy17615 241 TLSFMNPR-------------LFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINHNINFK-Q 306 (459)
Q Consensus 241 ~l~ln~~~-------------~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~~lP~~v~~~~~~~-~ 306 (459)
+|+||++. .++||+||||||+++|+++|+|+|+||||+|+||+||++.+ ..+||.+.||++.. +
T Consensus 211 ~l~Ln~~~~~~~~~~~~~~~v~l~d~~fHpcV~~~~f~~~r~isf~PPdg~F~Lm~Yr~~~~--~~~P~~i~~~~~~~~~ 288 (423)
T 1w63_M 211 RLGLNDKVLFDNTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTH--VKPLIWIESVIEKHSH 288 (423)
T ss_dssp EEEECSCC-------------CEEEEEECTTEEESSSSSCCEEEECCCSEEEEEEEEEEECC--CCCTTCCEEEEEEETT
T ss_pred EEEECCccccccccccccCceEcccccccccccHHHhCCCCeEEEECCCCcEEEEEEEecCC--cCCCEEEEEEEEecCC
Confidence 99999874 57899999999999999999999999999999999999876 57999999999875 5
Q ss_pred CEEEEEEeecCCCCC--ccceEEEEEcCCCCceeeEEEeeceeeEecCcccccccccccccccCCCcceeecCCceEEEE
Q psy17615 307 NKIDMTIGPKQTIGR--TIENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTW 384 (459)
Q Consensus 307 ~~~e~~l~~~~~~~~--~~~~v~I~ip~P~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~W 384 (459)
+++||+++++++++. .++||.|+||+|+.+.++.+.++.|+++|++ ++++++|
T Consensus 289 ~~ve~~l~~~~~~~~~~~~~~V~I~IP~P~~~~~~~~~~~~G~~~y~~-------------------------~~~~l~W 343 (423)
T 1w63_M 289 SRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVP-------------------------ENSEIVW 343 (423)
T ss_dssp TEEEEEEEEECCSCTTSEEESCEEEEECCTTCCCCEEEESSSEEEEET-------------------------GGGEEEE
T ss_pred CEEEEEEEEcccCCCcceeeEEEEEEeCCCCcccceEEecCccEEEec-------------------------CCCEEEE
Confidence 799999998887754 4899999999999998898888887776655 9999999
Q ss_pred EecccCCCCCcceEEEEEEecCCC-CCCCCCcceEEEEEECceecccceEeEEEeecc-CCCcccceEEEeecCCCC
Q psy17615 385 DVGRIDIENKLPNIRGSFTVQSGQ-ENHNFNLTINVKFTINQLAISGLKVNRLDMYGE-KYKPFKGVKYITTGGTFQ 459 (459)
Q Consensus 385 ~I~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~i~v~F~i~~~t~SGl~V~~l~v~~~-~~~p~k~VrY~t~sg~y~ 459 (459)
+|+++++ +++++++|++++.+.. ..++.++||+|+|++|++++||++|++|++.++ +|+|+|||||+|+||+|+
T Consensus 344 ~I~~i~~-~~~~~l~~~~~l~~~~~~~~~~~~pi~v~F~i~~~t~Sgl~V~~l~v~~~~~y~~~kwVrY~t~sg~y~ 419 (423)
T 1w63_M 344 SVKSFPG-GKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQAIPWVRYITQNGDYQ 419 (423)
T ss_dssp ECSEEET-TCEEEEEEEEEC----------CCCEEEEBCCSSCCTTCCCEEEEEEECSSCCCCEEEEEEEEEBSCEE
T ss_pred EeCcCCC-CCcEEEEEEEEccCCCcccccCCCcEEEEEEECCEeCCCCEEEEEEeEccCCCCCcCceEEEEeCCcEE
Confidence 9999998 7789999999998654 245678999999999999999999999999874 799999999999999996
No 3
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=100.00 E-value=2.8e-67 Score=520.10 Aligned_cols=281 Identities=26% Similarity=0.493 Sum_probs=220.3
Q ss_pred cccChHHHHhhcCCCchhhhhhccccCCCCcccCCCCCCCCCCccccCCCCCccccCCCCCccccccccCCcccccceeE
Q psy17615 123 LATESNVLKELIKPPNILRTIANTMTGGSNVSSILPSGQLSSVPWRRTGGSNVSSILPSGQLSSVPWRRTGVKYTNNEAY 202 (459)
Q Consensus 123 ~~t~~~~l~~~i~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~~nEi~ 202 (459)
|+|++++||++|..+++..+... . .....+| .+..++++||++|++|++||||
T Consensus 1 q~te~~~Lk~~i~~~~~~~~~~~-~----~~~~~~~----------------------~~~~~~v~WR~~gi~y~~NEi~ 53 (314)
T 1i31_A 1 QNSETGALKTFITQQGIKSQHQT-K----EEQSQIT----------------------SQVTGQIGWRREGIKYRRNELF 53 (314)
T ss_dssp ----------------------------------------------------------------CTTSCSCCCCSSCEEE
T ss_pred CcCChHHHHHhhcCCCeeccccc-c----ccccCCC----------------------ccccCCCCCCccCCccccceEE
Confidence 68999999999999987533210 0 0001111 2345679999999999999999
Q ss_pred EEEEEEEEEEEeCCCCEEEEEEEEEEEEEEEEcCCCceEEEecCC---------------------cccccccccccccc
Q psy17615 203 FDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNP---------------------RLFDDVSFHPCVRF 261 (459)
Q Consensus 203 vdV~E~v~~~~~~~G~i~~~~i~G~I~~~~~LsG~P~~~l~ln~~---------------------~~l~d~~fH~cV~~ 261 (459)
|||+|+|+++++++|.+++++|.|.|.|+|+|+|||+|+|+||++ ..++||+|||||++
T Consensus 54 vdV~E~v~~~i~~~G~v~~~eV~G~I~~~~~LsG~P~l~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FHpcV~l 133 (314)
T 1i31_A 54 LDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRL 133 (314)
T ss_dssp EEEEEEEEEEECSSCCEEEEEEEEEEEEEEECSSSCEEEEEESCCC-----------------CCCCCCSEEEECTTSBC
T ss_pred EEEEEEEEEEECCCCCEEEEEEEEEEEEEEEcCCCCeEEEEECCchhccccccccccccccccCCceEcccccccccccH
Confidence 999999999999999999999999999999999999999999875 35789999999999
Q ss_pred ccccccceEEEeCCCCcEEEEEEEecCCCccccCeEEEEEEEEe-CCEEEEEEeecCCCCC--ccceEEEEEcCCCCcee
Q psy17615 262 KRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINHNINFK-QNKIDMTIGPKQTIGR--TIENIVIEIPMPSVVLN 338 (459)
Q Consensus 262 ~~f~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~~lP~~v~~~~~~~-~~~~e~~l~~~~~~~~--~~~~v~I~ip~P~~~~~ 338 (459)
++|+++|+|+|+||||+|+||+||++.. ..+||.+.|+++.. ++++||+++++++++. .++||.|+||+|+.+.+
T Consensus 134 ~~f~~~r~IsFiPPDG~F~Lm~Yr~~~~--~~lP~~v~~~~~~~g~~~iE~~l~~~~~~~~~~~~~nV~I~IP~P~~~~~ 211 (314)
T 1i31_A 134 SKFDSERSISFIPPDGEFELMRYRTTKD--IILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSG 211 (314)
T ss_dssp C----CCCEEECCCSEEEEEEEEEECSS--CCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEEEEEEEEECCTTEEE
T ss_pred HHcCCcceEEEECCCCCeEEEEEEecCC--cCCCEEEEEEEEecCCcEEEEEEEEccCCCCcceeeEEEEEEECCCCccc
Confidence 9999999999999999999999999874 67999999999876 4699999999888764 49999999999999988
Q ss_pred eEEEeeceeeEecCcccccccccccccccCCCcceeecCCceEEEEEecccCCCCCcceEEEEEEecCCC-CCCCCCcce
Q psy17615 339 CTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRGSFTVQSGQ-ENHNFNLTI 417 (459)
Q Consensus 339 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~W~I~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~i 417 (459)
+.+.++.|+++|++ ++++++|+|+++++ +++++++|++++.+.. ...+.++||
T Consensus 212 ~~~~~~~G~~~y~~-------------------------~~~~l~W~I~~i~g-~~e~~l~~~~~l~s~~~~~~~~~~pi 265 (314)
T 1i31_A 212 VQVICMKGKAKYKA-------------------------SENAIVWKIKRMAG-MKESQISAEIELLPTNDKKKWARPPI 265 (314)
T ss_dssp EEEECSSSEEEEEG-------------------------GGTEEEEEEEEEES-SEEEEEEEEEEECCCCSSSCCCCCCE
T ss_pred ceEEecCceEEEec-------------------------CCCEEEEEeCcCCC-CCcEEEEEEEEecCCCcCCccCCCcE
Confidence 88888777776655 99999999999998 7889999999998753 345668999
Q ss_pred EEEEEECceecccceEeEEEeecc-----CCCcccceEEEeecCCCC
Q psy17615 418 NVKFTINQLAISGLKVNRLDMYGE-----KYKPFKGVKYITTGGTFQ 459 (459)
Q Consensus 418 ~v~F~i~~~t~SGl~V~~l~v~~~-----~~~p~k~VrY~t~sg~y~ 459 (459)
+|+|++| +++||++|++|++.++ +|+|+|||||+|+||+|+
T Consensus 266 ~v~F~ip-~t~Sgl~V~~l~v~e~~~~~~~y~~~kwVrYit~sg~y~ 311 (314)
T 1i31_A 266 SMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYE 311 (314)
T ss_dssp EEEEEES-SCTTCCCEEEEEEECSSSSCCGGGCEEEEEEEEEEEEEE
T ss_pred EEEEEEe-ecccCcEEEEEEEeccccccCCCCccCceEEEEeCCeEE
Confidence 9999999 9999999999999875 799999999999999996
No 4
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=100.00 E-value=6.4e-64 Score=483.94 Aligned_cols=244 Identities=35% Similarity=0.616 Sum_probs=218.3
Q ss_pred ccccCCcccccceeEEEEEEEEEEEEeCCCCEEEEEEEEEEEEEEEEcCCCceEEEecCCc-------------cccccc
Q psy17615 188 PWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNPR-------------LFDDVS 254 (459)
Q Consensus 188 ~WR~~~~~~~~nEi~vdV~E~v~~~~~~~G~i~~~~i~G~I~~~~~LsG~P~~~l~ln~~~-------------~l~d~~ 254 (459)
+||++|++|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|||+|+|+||++. .++||+
T Consensus 1 ~WR~~~i~y~~nei~vdV~E~v~~~~~~~G~v~~~~v~G~i~~~~~lsG~p~~~l~ln~~~~~~~~~~~~~~~~~l~d~~ 80 (266)
T 4en2_M 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVK 80 (266)
T ss_dssp CCCCTTCCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECCSCCEEEEEECBHHHHHHTTCTTSCCBCCEEEE
T ss_pred CCcCCCCccccCeEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCEEEEEEcCccccccccccccCccCccccc
Confidence 6999999999999999999999999999999999999999999999999999999998632 488999
Q ss_pred cccccccccccccceEEEeCCCCcEEEEEEEecCCCccccCeEEEEEEEEe-CCEEEEEEeecCCCC--CccceEEEEEc
Q psy17615 255 FHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINHNINFK-QNKIDMTIGPKQTIG--RTIENIVIEIP 331 (459)
Q Consensus 255 fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~~lP~~v~~~~~~~-~~~~e~~l~~~~~~~--~~~~~v~I~ip 331 (459)
|||||++++|+++|+|+|+||||+|+||+||++.. ..+||.+.|+++.. ++++++.++++++++ ..++||.|+||
T Consensus 81 fH~cV~~~~f~~~r~i~f~PPdg~F~Lm~yr~~~~--~~~Pi~i~~~~~~~~~~~vei~v~~k~~~~~~~~~~nV~I~IP 158 (266)
T 4en2_M 81 FHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTH--VKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIP 158 (266)
T ss_dssp ECTTBCHHHHHHHCCCEECCCSEEEEEEEEEECCC--CCCSEEEEEEEEEEETTEEEEEEEEEECBCTTCEEEEEEEEEE
T ss_pred cccccCHhHccccceEEEeCCCCceEEEEEEecCC--CCCCEEEEEEEecCCCEEEEEEEEEecCCCCCcEEEEEEEEEC
Confidence 99999999999999999999999999999999875 47999999999876 579999999988875 36999999999
Q ss_pred CCCCceeeEEEeeceeeEecCcccccccccccccccCCCcceeecCCceEEEEEecccCCCCCcceEEEEEEecCCC-CC
Q psy17615 332 MPSVVLNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRGSFTVQSGQ-EN 410 (459)
Q Consensus 332 ~P~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~W~I~~~~~~~~~~~l~g~~~~~~~~-~~ 410 (459)
+|.++.++.+.++.|+++|++ ++++++|+|+++++ +++++++|++++.+.. ..
T Consensus 159 ~P~~~~~~~~~~~~G~~~y~~-------------------------~~~~lvW~I~~~~g-~~e~~l~~~~~l~s~~~~~ 212 (266)
T 4en2_M 159 VPNDADSPKFKTTVGSVKWVP-------------------------ENSEIVWSVKSFPG-GKEYLMRAHFGLPSVEAED 212 (266)
T ss_dssp CCTTCEEEEEEESSSEEEEET-------------------------TTTEEEEEEEEEES-SCEEEEEEEEEC-------
T ss_pred CCCCcCcceEEecCceEEEec-------------------------cCCEEEEEEeeECC-CcceEEEEEEEeCCCCCCC
Confidence 999998898888877776655 99999999999998 7889999999997642 34
Q ss_pred CCCCcceEEEEEECceecccceEeEEEeecc-CCCcccceEEEeecCCCC
Q psy17615 411 HNFNLTINVKFTINQLAISGLKVNRLDMYGE-KYKPFKGVKYITTGGTFQ 459 (459)
Q Consensus 411 ~~~~~~i~v~F~i~~~t~SGl~V~~l~v~~~-~~~p~k~VrY~t~sg~y~ 459 (459)
.+.++||+|+|++|++++|||+|++|+|.++ +|+|+|||||+|+||+|+
T Consensus 213 ~~~~~pI~v~F~ip~~t~SGl~V~~L~v~e~~~y~~~kwVrY~T~sg~y~ 262 (266)
T 4en2_M 213 KEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQ 262 (266)
T ss_dssp ---CCCEEEEEEEESEESSCCCEEEEEEECSSCCCEEEEEEEEEECSSEE
T ss_pred cccCCcEEEEEEeCCceeCCcEEEEEEeeccCCCCCCCCEEEEEeCCCEE
Confidence 5678999999999999999999999999874 899999999999999996
No 5
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=100.00 E-value=1.8e-61 Score=488.79 Aligned_cols=247 Identities=25% Similarity=0.483 Sum_probs=223.0
Q ss_pred cccc-cc---ccCCcccccceeEEEEEEEEEEEEeCCCCEEEEEEEEEEEEEEEEcCCCceEEEecCC------------
Q psy17615 184 LSSV-PW---RRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNP------------ 247 (459)
Q Consensus 184 ~~~~-~W---R~~~~~~~~nEi~vdV~E~v~~~~~~~G~i~~~~i~G~I~~~~~LsG~P~~~l~ln~~------------ 247 (459)
++.+ || |+.|++|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|||+|+|+||+.
T Consensus 102 s~~~~~~~~~~~~gi~y~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~k~~LsG~P~~~l~LNd~~~~~~~~~~~~~ 181 (385)
T 3ml6_A 102 SPQPPPYHELEFGGSGGSRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTAD 181 (385)
T ss_dssp -CCCCCCEEBCSSSBCCCCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSCCEEEEEECC-------------
T ss_pred CCCCCCchhccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcCccccccccccccc
Confidence 3344 99 8899999999999999999999999999999999999999999999999999999864
Q ss_pred ---------ccccccccccccccccccccceEEEeCCCCcEEEEEEEecCCCccccCeEEEEEEEEe-CCEEEEEEeecC
Q psy17615 248 ---------RLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINHNINFK-QNKIDMTIGPKQ 317 (459)
Q Consensus 248 ---------~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~~lP~~v~~~~~~~-~~~~e~~l~~~~ 317 (459)
..++||+|||||++++|+++|+|+|+||||+|+||+||++.. ..+||.++|+++.. ++++|+++++++
T Consensus 182 ~~~~~~~~~i~l~d~~FH~CV~l~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~--~~~Pf~i~~~v~~~~~~~vei~v~lk~ 259 (385)
T 3ml6_A 182 ETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKD--IILPFRVIPLVREVGRTKLEVKVVIKS 259 (385)
T ss_dssp ---------CCCCEEEECTTBCCCCSSSCSEEEECCCSEEEEEEEEEECSS--CCCSEEEEEEEEEETTTEEEEEEEEEE
T ss_pred cccccccCceEccccccccccChhHccccceEEEeCCCCceEEEEEEcCCC--CCCCEEEEEEEEeCCCeEEEEEEEEee
Confidence 347899999999999999999999999999999999999864 57999999999987 579999999998
Q ss_pred CCCC--ccceEEEEEcCCCCceeeEEEeeceeeEecCcccccccccccccccCCCcceeecCCceEEEEEecccCCCCCc
Q psy17615 318 TIGR--TIENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKL 395 (459)
Q Consensus 318 ~~~~--~~~~v~I~ip~P~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~W~I~~~~~~~~~ 395 (459)
+++. .++||.|+||+|+++.++.+.++.|+++|++ ++++++|+|+++++ +++
T Consensus 260 ~f~~~~~~~nV~I~IP~P~~~~~~~~~~~~G~~~y~~-------------------------~~~~lvW~I~k~~g-~~e 313 (385)
T 3ml6_A 260 NFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKA-------------------------SENAIVWKIKRMAG-MKE 313 (385)
T ss_dssp CSCTTCCEEEEEEEEECCTTEEEEEEEESSSEEEEEG-------------------------GGTEEEEEEEEECS-SEE
T ss_pred cCCCcceEEEEEEEecCCCCcccceEEecCceEEEec-------------------------cCcEEEEEeeeECC-Ccc
Confidence 8764 6899999999999998888888877776655 99999999999998 788
Q ss_pred ceEEEEEEecCCC-CCCCCCcceEEEEEECceecccceEeEEEeecc-----CCCcccceEEEeecCCCC
Q psy17615 396 PNIRGSFTVQSGQ-ENHNFNLTINVKFTINQLAISGLKVNRLDMYGE-----KYKPFKGVKYITTGGTFQ 459 (459)
Q Consensus 396 ~~l~g~~~~~~~~-~~~~~~~~i~v~F~i~~~t~SGl~V~~l~v~~~-----~~~p~k~VrY~t~sg~y~ 459 (459)
++++|++.+.+.. ...+.++||+|+|++| +++|||+|++|+|.++ +|+|+|||||+|+||+|+
T Consensus 314 ~~l~~~~~l~~~~~~~~~~~~PI~v~F~Ip-~t~SGl~Vr~L~v~e~~~~~~~y~~~kwVRYiT~sg~Y~ 382 (385)
T 3ml6_A 314 SQISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYE 382 (385)
T ss_dssp EEEEEEEEECCCSSCCSCCCCCEEEEEEES-SCTTCCCEEEEEEECSSSCCCGGGCEEEEEECEEEEEEE
T ss_pred eEEEEEEEECCCCCCccccCCCEEEEEEEe-ccccCCEEEEEEEecccCcccCCCccccEEEEEECCCEE
Confidence 9999999997643 3456789999999999 9999999999999753 589999999999999996
No 6
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=100.00 E-value=8.5e-61 Score=469.26 Aligned_cols=247 Identities=19% Similarity=0.335 Sum_probs=202.3
Q ss_pred cccccccCCcccccceeEEEEEEEEEEEEeCCCCEEEEEEEEEEEEEEEEcCCCceEEEecCC--------------ccc
Q psy17615 185 SSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNP--------------RLF 250 (459)
Q Consensus 185 ~~~~WR~~~~~~~~nEi~vdV~E~v~~~~~~~G~i~~~~i~G~I~~~~~LsG~P~~~l~ln~~--------------~~l 250 (459)
+.++||+. +|++|||||||+|+|+++++++|.+++++|.|.|.|+|+|+|||+|+|+||++ ..+
T Consensus 21 pv~~wr~~--~~~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Lnd~~~~~~~~~~~~~~~~~l 98 (301)
T 3l81_A 21 PVLSSRSD--QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKSELRGYGPGIRV 98 (301)
T ss_dssp --------------CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCTTCEEEEEECSSCEESCCTTTCCCSSSEE
T ss_pred cccccccc--cCCcceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcccccccccccccccCceEc
Confidence 34699985 79999999999999999999999999999999999999999999999999843 348
Q ss_pred cccccccccccccccccceEEEeCCCCcEEEEEEEecCCCccccCeEEEEEEEEeC--CEEEEEEeecCCCC--CccceE
Q psy17615 251 DDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINHNINFKQ--NKIDMTIGPKQTIG--RTIENI 326 (459)
Q Consensus 251 ~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~~lP~~v~~~~~~~~--~~~e~~l~~~~~~~--~~~~~v 326 (459)
+||+|||||++++|+++|+|+|+||||+|+||+||++......+||.++|+++..+ +++||++++++.++ ..++||
T Consensus 99 ~d~~fH~cV~~~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~~~P~~v~~~v~~~~~~~~ie~~l~l~~~f~~~~~~~nV 178 (301)
T 3l81_A 99 DEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRLFPSVQWDRGSGRLQVYLKLRCDLLSKSQALNV 178 (301)
T ss_dssp SEEEEETTCBCTTHHHHCEEEECCCSEEEEEEEEEECSCCSSCCSEEEEEEEEECTTTSEEEEEEEEEECSCTTCEEEEE
T ss_pred cccccccccChhHccccceEEecCCCCeeEEEEEEecCCCccCCCEEEEEEEEECCCcEEEEEEEEEecCCCCCcEEEEE
Confidence 99999999999999999999999999999999999987644479999999999873 69999999888775 368999
Q ss_pred EEEEcCCCCceeeEEEeeceeeEecCcccccccccccccccCCCcceeecCCceEEEEEecccCCCCCcceEEEEEEecC
Q psy17615 327 VIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRGSFTVQS 406 (459)
Q Consensus 327 ~I~ip~P~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~W~I~~~~~~~~~~~l~g~~~~~~ 406 (459)
.|+||+|+++.++.+... ...|+++| ++++++|+|+++++ +++.++++.+++.+
T Consensus 179 ~I~IPvP~~~~~~~~~~~-----------------------~~~G~~~y--~~~~lvW~I~~~~g-~~~~s~~~~~~l~~ 232 (301)
T 3l81_A 179 RLHLPLPRGVVSLSQELS-----------------------SPEQKAEL--AEGALRWDLPRVQG-GSQLSGLFQMDVPG 232 (301)
T ss_dssp EEEEECCTTCEEEEEEES-----------------------STTCEEEE--ETTEEEEEECCEET-TCEEEEEEEEECCC
T ss_pred EEEEcCCCCcccceEEEe-----------------------ecCceEEE--eCcEEEEEEeeECC-CcEEeEEEEEEecC
Confidence 999999999887763311 12355667 78999999999998 66777888887765
Q ss_pred CCC----------CCCCCcceEEEEEECceecccceEeEEEeecc---CCCcccceEEEeecCCCC
Q psy17615 407 GQE----------NHNFNLTINVKFTINQLAISGLKVNRLDMYGE---KYKPFKGVKYITTGGTFQ 459 (459)
Q Consensus 407 ~~~----------~~~~~~~i~v~F~i~~~t~SGl~V~~l~v~~~---~~~p~k~VrY~t~sg~y~ 459 (459)
... ..+..+||+|+|++|++++||++|++|+|.++ +|+|+|||||+|+||+|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~PI~v~F~ip~~t~SGl~Vr~L~v~e~~~~~y~~~kwVRYiT~sg~Y~ 298 (301)
T 3l81_A 233 PPGPPSHGLSTSASPLGLGPASLSFELPRHTCSGLQVRFLRLAFRPSGNANPHKWVRHLSHSDAYV 298 (301)
T ss_dssp CCC------------CCCCCEEEEEEEETCCSSCCCEEEEEEEC-------CEEEEEEEEEEEEEE
T ss_pred CccccccccccccccccCCCEEEEEEeCCccccCcEEEEEEEecccccCCCCccceEEEEeCCcEE
Confidence 322 14568999999999999999999999999874 579999999999999996
No 7
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=1e-32 Score=245.92 Aligned_cols=140 Identities=16% Similarity=0.257 Sum_probs=129.5
Q ss_pred CeeEEEEEcCCCCEEEEeccCCCccc---chHHHHHHHhhccCCCCCCCCeEEcCCEEEEEEEeCcEEEEEEEcCCCChH
Q psy17615 1 MIHSLFIINSTSDIILEKHWKRIISR---SVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPL 77 (459)
Q Consensus 1 MI~~i~Iln~~G~~l~~r~y~~~~~~---~~~~~f~~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~~ 77 (459)
||+++||+|++|+++++|||++...+ ...+.|++.+..+ +...+|++++++++|+|+++++|||+++++.++||+
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel 78 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLAR--KPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNEL 78 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTS--CSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHH
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhcc--CCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHH
Confidence 99999999999999999999988665 4567788877663 346799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccCHHHHhhhHHHHHHHHHHHhhCCcccccChHHHHhhcCCCchhhh
Q psy17615 78 FVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPLATESNVLKELIKPPNILRT 142 (459)
Q Consensus 78 ~~~~~L~~~~~~l~~y~~~l~e~~i~~n~~~i~~lldE~id~G~p~~t~~~~l~~~i~~~s~~~~ 142 (459)
+++++||+++++|++|||+++|.+|++||+++|++||||+|+|+|++|+++.|+++|.+++.+++
T Consensus 79 ~~le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~l~~ 143 (158)
T 1w63_Q 79 ITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQE 143 (158)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999998776544
No 8
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=99.97 E-value=1e-31 Score=235.57 Aligned_cols=135 Identities=21% Similarity=0.280 Sum_probs=123.0
Q ss_pred CeeEEEEEcCCCCEEEEeccCC---CcccchHHHHHHHhhccCCCCCCCCeEEcCCEEEEEEEeCcEEEEEEEcCCCChH
Q psy17615 1 MIHSLFIINSTSDIILEKHWKR---IISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPL 77 (459)
Q Consensus 1 MI~~i~Iln~~G~~l~~r~y~~---~~~~~~~~~f~~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~~ 77 (459)
||+++||+|++|+++++|+|++ +..+..++.|++.+.. +..+.+|++++++++++|+++++|||+++++.++||+
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~--~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l 78 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTV--RDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNL 78 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHT--CCTTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHH
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhc--CCCCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHH
Confidence 9999999999999999999994 3335677889998885 3346899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccCHHHHhhhHHHHHHHHHHHhhCCcccccC-hHHHHhhcCCC
Q psy17615 78 FVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPLATE-SNVLKELIKPP 137 (459)
Q Consensus 78 ~~~~~L~~~~~~l~~y~~~l~e~~i~~n~~~i~~lldE~id~G~p~~t~-~~~l~~~i~~~ 137 (459)
+++++||+++++|++|||+++|.+|++||+++|++||||+|+|+|++|+ .+.|+.++.++
T Consensus 79 ~~le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~ 139 (142)
T 2vgl_S 79 AYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQ 139 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999995 77788887543
No 9
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=99.97 E-value=6.8e-30 Score=225.57 Aligned_cols=133 Identities=13% Similarity=0.263 Sum_probs=116.7
Q ss_pred CeeEEEEEcCCCCEEEEeccCCCc-c---cchHH-HHHHHhhccCCCCCCCCeEEcCCEEEEEEEeCcEEEEEEEcCCCC
Q psy17615 1 MIHSLFIINSTSDIILEKHWKRII-S---RSVCD-YFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVP 75 (459)
Q Consensus 1 MI~~i~Iln~~G~~l~~r~y~~~~-~---~~~~~-~f~~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n 75 (459)
||+++||+|++|+++++|||+++. + +...+ .+++.+.. ..+|++.+++++++|+++++|||+++++.++|
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r-----~~~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eN 86 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHR-----TDSEIALLEGLTVVYKSSIDLYFYVIGSSYEN 86 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSS-----CCCCEEEETTEEEEEEECSSCEEEEEEETTSC
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-----CCCCEEEECCEEEEEEEECCEEEEEEEcCCCC
Confidence 999999999999999999999853 2 23333 45555522 23799999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhc-cccCHHHHhhhHHHHHHHHHHHhhCCcccccChHHHHhhcCCCc
Q psy17615 76 PLFVIEFLDRVVTTFHDYF-NDCSESVLKDNYVVVYEILDEMLDNGFPLATESNVLKELIKPPN 138 (459)
Q Consensus 76 ~~~~~~~L~~~~~~l~~y~-~~l~e~~i~~n~~~i~~lldE~id~G~p~~t~~~~l~~~i~~~s 138 (459)
|++++++||+++++|++|| ++++|.+|++||+++|++||||+|+|+||+|+++.|...+.+++
T Consensus 87 el~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~ 150 (153)
T 3tjz_C 87 ELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRG 150 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC----
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhccc
Confidence 9999999999999999999 89999999999999999999999999999999999999998764
No 10
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=98.78 E-value=3.6e-06 Score=81.58 Aligned_cols=202 Identities=18% Similarity=0.252 Sum_probs=131.6
Q ss_pred cceeEEEEEEEEEEEEeCCCCEEEEEEEEEEEEEEEEcC-------CCceEEEecCCcccccc----ccccccccccccc
Q psy17615 198 NNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSG-------MPDLTLSFMNPRLFDDV----SFHPCVRFKRWEA 266 (459)
Q Consensus 198 ~nEi~vdV~E~v~~~~~~~G~i~~~~i~G~I~~~~~LsG-------~P~~~l~ln~~~~l~d~----~fH~cV~~~~f~~ 266 (459)
.-.+-.-+.|.|||.+. +|.+.++.|.|+|.+.- ..| -+.+.+.|+|...|+.+ +|-.++.-..|.
T Consensus 67 ~pGLnASI~E~VNA~Fk-gg~~tk~~v~GEiaLsy-~~~~~s~~p~p~~l~fRL~N~~~Lekv~pN~~fv~~~~~~eF~- 143 (328)
T 3g9h_A 67 QFGLNASIAEVLNASFK-DGMLQNSQLIGEIALNY-LPNSVMNSPLPIGINLRINNGAKFEKVILNQAFIERVAPEEFK- 143 (328)
T ss_dssp CCEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEE-ECCSSSCCCCCSEEEEEEETGGGEEEEEECTTTEEEEETTEEE-
T ss_pred CCceeEEEEEEEEEEEE-CCcEEEEEEEEEEEEec-CCCccccCCCCccEEEEecCcchhheeeCCHHHhccCCCCCEE-
Confidence 45788899999999997 48899999999987753 444 13477888776666553 333333322222
Q ss_pred cceEEEeCC---CCcEEEEEEEecCCCccccCeEEEEEEEEeCCEEEEEEeecCC--CC-----CccceEEEEEcCCC-C
Q psy17615 267 ERILSFIPP---DGNFRLMSYHINTQNLVAIPLYINHNINFKQNKIDMTIGPKQT--IG-----RTIENIVIEIPMPS-V 335 (459)
Q Consensus 267 ~~~i~F~PP---dG~F~Lm~Yr~~~~~~~~lP~~v~~~~~~~~~~~e~~l~~~~~--~~-----~~~~~v~I~ip~P~-~ 335 (459)
|-++ ...-.+++|+++. ...|+.+.+..........+.|..+.+ +. ..++||.|.+|+.. .
T Consensus 144 -----vn~~~L~sktv~~lKYqVs~---~~~PL~l~p~WK~E~~qtsliI~Yk~NP~~~~~~~~~~L~Nv~~~V~ldGa~ 215 (328)
T 3g9h_A 144 -----VNPSFIDSRTLGAIKYSIKE---PIAPIVIHPVWRFESHQASVVLTVKMSPSLPDEISQIVIEDLVVFVNIDGAN 215 (328)
T ss_dssp -----ECTTTTBTCEEEEEEEEEES---CCCSEEEEEEEEECSSEEEEEEEEEECTTSCTTCCEEEEEEEEEEEEBCSSC
T ss_pred -----EchHHhcccceeeEEEEECC---CCCCeEEEeeeecCCCeeEEEEEEEECCCCcCcCCCceeeeEEEEEEeCCCc
Confidence 2221 1235689999975 478999998887765555555544432 22 26899999999975 2
Q ss_pred ceeeEEEeeceeeEecCcccccccccccccccCCCcceeecCCceEEEEEecc-c--CCCCCcceEEEEEEecCCCCCCC
Q psy17615 336 VLNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGR-I--DIENKLPNIRGSFTVQSGQENHN 412 (459)
Q Consensus 336 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~W~I~~-~--~~~~~~~~l~g~~~~~~~~~~~~ 412 (459)
+.++... | .+.|..+++.+.|+|+. + ...+....|.++|...... .+.
T Consensus 216 ats~qsk---------P-------------------~gtwn~e~~ri~Wkl~e~l~l~~~g~~gkLiARf~~~g~~-~~~ 266 (328)
T 3g9h_A 216 ATSALSK---------P-------------------QGSFSKEKKRITWRFKEPVVLTRNGEGQRLIARFITDGLA-HES 266 (328)
T ss_dssp EEEEEES---------S-------------------SCCBCSSSCEEEEECSSCEEEETTCCCEEEEEEEEESSCC-CBC
T ss_pred eeEEEec---------C-------------------CceeccccCEEEEECCCCcccccCCCCCeEEEEEEcCCCC-CCC
Confidence 3332221 1 23345599999999998 4 3212226889999984322 222
Q ss_pred CCcceEEEEEECce---------ecccceEeEEEeec
Q psy17615 413 FNLTINVKFTINQL---------AISGLKVNRLDMYG 440 (459)
Q Consensus 413 ~~~~i~v~F~i~~~---------t~SGl~V~~l~v~~ 440 (459)
. ..+.++|++.+. .-|||.|...+..+
T Consensus 267 ~-~gV~akF~~~~~~~~~~~~~~~gsgi~i~~~~~~~ 302 (328)
T 3g9h_A 267 A-KGVITKFTISETDNVALPHSGAGSGITLTCQELDE 302 (328)
T ss_dssp S-SCEEEEEEECCCSCSSCTTTTCSCCCEEEEEEESS
T ss_pred C-CcEEEEEEEeCCCcccccccccCCceeEEeccccc
Confidence 2 239999999876 36799998887753
No 11
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=92.06 E-value=1.2 Score=39.97 Aligned_cols=94 Identities=7% Similarity=0.077 Sum_probs=59.6
Q ss_pred CeeEEEEEcC-CCCEEEEeccCCC-c---ccchHHHHHHHhhccCCC-CCCCCeEEcCCEEEEEEEeCcEEEEEEEcCCC
Q psy17615 1 MIHSLFIINS-TSDIILEKHWKRI-I---SRSVCDYFFEAQNSVAKP-EDIPPIITTPHHYLISVYRKGVFFVAVTMSEV 74 (459)
Q Consensus 1 MI~~i~Iln~-~G~~l~~r~y~~~-~---~~~~~~~f~~~~~~~~~~-~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~ 74 (459)
||...+|.-. +|-+|.+ ++... . .+.....+.+.+...... ...---++.+++.|.|...+++.++|+|+.+.
T Consensus 2 Mi~ya~IaR~~d~~iLa~-~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~y 80 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAA-SMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAF 80 (196)
T ss_dssp CCCCEEEEETTTCCEEEE-ECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTS
T ss_pred ceEEEEEEEcCCCcEEEE-eecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCc
Confidence 6766777653 4555554 43311 1 112223333333332111 11112456788888898899999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcc
Q psy17615 75 PPLFVIEFLDRVVTTFHDYFN 95 (459)
Q Consensus 75 n~~~~~~~L~~~~~~l~~y~~ 95 (459)
+.-.++.||..+.+-+..-++
T Consensus 81 p~r~af~fL~~i~~~F~~~~~ 101 (196)
T 2nut_C 81 PKKLAFAYLEDLHSEFDEQHG 101 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhcc
Confidence 999999999998887777665
No 12
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=90.84 E-value=1.5 Score=39.06 Aligned_cols=84 Identities=13% Similarity=0.136 Sum_probs=57.9
Q ss_pred CCCCEEEEeccCCCcccchHHHHHHHhhccCCCCCCCCeEEcCCEEEEEEEeCcEEEEEEEcCCCChHHHHHHHHHHHHH
Q psy17615 10 STSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPLFVIEFLDRVVTT 89 (459)
Q Consensus 10 ~~G~~l~~r~y~~~~~~~~~~~f~~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~~~~~L~~~~~~ 89 (459)
.+|.++++.+=.. ... ...+-+.+.....+...--.++.+++.|-|...+++.++|+|+.+-+--.++.||..+.+-
T Consensus 10 Arg~~iLae~t~~--~gn-f~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i~~e 86 (189)
T 4b93_A 10 ARGTTILAKHAWC--GGN-FLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKR 86 (189)
T ss_dssp EETTEEEEEEESS--EEC-HHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred EeCCEEEEeCCCC--CCC-HHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHHHHH
Confidence 3688888875221 222 2223333443211122222567889999999999999999999999999999999999888
Q ss_pred HHHhccc
Q psy17615 90 FHDYFND 96 (459)
Q Consensus 90 l~~y~~~ 96 (459)
+..-++.
T Consensus 87 F~~~~~~ 93 (189)
T 4b93_A 87 FQTTYGS 93 (189)
T ss_dssp HHHHHGG
T ss_pred HHhhccc
Confidence 8776663
No 13
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=90.81 E-value=1 Score=39.44 Aligned_cols=49 Identities=10% Similarity=0.256 Sum_probs=42.8
Q ss_pred eEEcCCEEEEEEEeCcEEEEEEEcCCCChHHHHHHHHHHHHHHHHhccc
Q psy17615 48 IITTPHHYLISVYRKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFND 96 (459)
Q Consensus 48 i~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~~~~~L~~~~~~l~~y~~~ 96 (459)
-++.+++.|-|...++|.|+|+++.+-.--.++.||..+.+-+..-++.
T Consensus 87 s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~~eF~~~y~~ 135 (169)
T 2vx8_A 87 TYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGS 135 (169)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHHHHHHHHhhh
Confidence 5667898888888999999999999999999999999988888776663
No 14
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=89.82 E-value=4.1 Score=36.94 Aligned_cols=24 Identities=17% Similarity=0.458 Sum_probs=21.4
Q ss_pred CeeEEEEEcCCCCEEEEeccCCCc
Q psy17615 1 MIHSLFIINSTSDIILEKHWKRII 24 (459)
Q Consensus 1 MI~~i~Iln~~G~~l~~r~y~~~~ 24 (459)
||.+|+|+|+.|..|++|.|....
T Consensus 2 ~i~sl~IiNk~GglIY~r~~~~~~ 25 (219)
T 3cue_A 2 AIETILVINKSGGLIYQRNFTNDE 25 (219)
T ss_dssp CEEEEEEECTTSCEEEEEECSSCC
T ss_pred eeEEEEEEeCCCCEEeehhhccCc
Confidence 689999999999999999997543
No 15
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=88.39 E-value=3.9 Score=35.87 Aligned_cols=82 Identities=13% Similarity=0.106 Sum_probs=57.6
Q ss_pred CCCEEEEeccCCCcccchHHHHHHHhhccCCCCCCCCeEEcCCEEEEEEEeCcEEEEEEEcCCCChHHHHHHHHHHHHHH
Q psy17615 11 TSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPLFVIEFLDRVVTTF 90 (459)
Q Consensus 11 ~G~~l~~r~y~~~~~~~~~~~f~~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~~~~~L~~~~~~l 90 (459)
+|.++|+.+=... +-.+.+-+.+..+.......-.++.+++.|-|...+++.++|+|+.+..--+++.||..+.+-+
T Consensus 63 rg~tiLAE~t~~~---gnf~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI~~eF 139 (173)
T 4afi_A 63 RGTTILAKHAWCG---GNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRF 139 (173)
T ss_dssp ETTEEEEEEESSC---CCHHHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEccCCC---CCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHHHHHH
Confidence 6788888663321 2223344444442221121235678899999999999999999999999999999999999888
Q ss_pred HHhcc
Q psy17615 91 HDYFN 95 (459)
Q Consensus 91 ~~y~~ 95 (459)
..-+|
T Consensus 140 ~~~yg 144 (173)
T 4afi_A 140 QTTYG 144 (173)
T ss_dssp HHHHG
T ss_pred HHHhc
Confidence 77776
No 16
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=88.03 E-value=3.5 Score=34.74 Aligned_cols=91 Identities=9% Similarity=0.093 Sum_probs=61.8
Q ss_pred eeEEEEEcCCCCEEEEeccCCCcc---c-chHHHHHHHhhcc--CCCCCCCC-eEEcCCEEEEEEEeCcEEEEEEEcCCC
Q psy17615 2 IHSLFIINSTSDIILEKHWKRIIS---R-SVCDYFFEAQNSV--AKPEDIPP-IITTPHHYLISVYRKGVFFVAVTMSEV 74 (459)
Q Consensus 2 I~~i~Iln~~G~~l~~r~y~~~~~---~-~~~~~f~~~~~~~--~~~~~~~p-i~~~~~~~~v~~~~~~l~~v~~~~~~~ 74 (459)
+.+|+|.|++|=+|+.-...+... | +.+..|-...... -.-+++.. |..++++.+|+.....|++-.+++++.
T Consensus 38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias~~a 117 (143)
T 3cpt_A 38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSSA 117 (143)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETTS
T ss_pred eEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEecCCC
Confidence 579999999999999877654211 1 2333333322210 01133334 446788889999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHH
Q psy17615 75 PPLFVIEFLDRVVTTFHD 92 (459)
Q Consensus 75 n~~~~~~~L~~~~~~l~~ 92 (459)
|.-.++.+=+.+..+|.+
T Consensus 118 NtG~Il~Le~~L~p~l~~ 135 (143)
T 3cpt_A 118 NTGLIVSLEKELAPLFEE 135 (143)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CchhHhhhHHHHHHHHHH
Confidence 998888876666655554
No 17
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=87.11 E-value=5.3 Score=35.33 Aligned_cols=93 Identities=12% Similarity=0.054 Sum_probs=60.7
Q ss_pred CeeEEEEEcCCCCEEEEeccCCCcccchHHHHHHHhhccCCCCCCCCeEEcCCEEEEEEEeCc--EEEEEEEcCCCChHH
Q psy17615 1 MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKG--VFFVAVTMSEVPPLF 78 (459)
Q Consensus 1 MI~~i~Iln~~G~~l~~r~y~~~~~~~~~~~f~~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~--l~~v~~~~~~~n~~~ 78 (459)
|++.+.|+++.|=+|-+..-........+.++.+.+.-..+.+ .+.+..+++.+=|...|+ |.||++-..-.+...
T Consensus 10 ~~D~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER~~--~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~Y 87 (185)
T 2fh5_A 10 MVDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGG--NNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTY 87 (185)
T ss_dssp SCSEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHH
T ss_pred ceeEEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhccccC--CCceeEcCeEEEEEEeccCCEEEEEEEcccccchH
Confidence 8899999999999998743222222346677777766532222 345778998877777665 788888877666666
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy17615 79 VIEFLDRVVTTFHDYFN 95 (459)
Q Consensus 79 ~~~~L~~~~~~l~~y~~ 95 (459)
+=+||..+...+.+.|+
T Consensus 88 iD~LL~~v~~~Fv~~Y~ 104 (185)
T 2fh5_A 88 VDKLIDDVHRLFRDKYR 104 (185)
T ss_dssp HHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66777777666666664
No 18
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=84.50 E-value=8.8 Score=32.37 Aligned_cols=93 Identities=16% Similarity=0.096 Sum_probs=56.7
Q ss_pred eeEEEEEcCCC--CEEEEeccCC----CcccchHHHH----HHHhhccCCCCCCCCeEEcCCEEEEEE-EeCcEEEEEEE
Q psy17615 2 IHSLFIINSTS--DIILEKHWKR----IISRSVCDYF----FEAQNSVAKPEDIPPIITTPHHYLISV-YRKGVFFVAVT 70 (459)
Q Consensus 2 I~~i~Iln~~G--~~l~~r~y~~----~~~~~~~~~f----~~~~~~~~~~~~~~pi~~~~~~~~v~~-~~~~l~~v~~~ 70 (459)
|.++.|+-.++ -++|+..+.- ...|+...+| -+.+..+...+. ---++.+++.+-|. ..+++.++|+|
T Consensus 7 l~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~-R~sv~~~~y~fH~~~~~~gl~~l~i~ 85 (144)
T 3bw6_A 7 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQ-RQSIEEGNYIGHVYARSEGICGVLIT 85 (144)
T ss_dssp EEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTE-EEEEEETTEEEEEEECTTSEEEEEEE
T ss_pred EEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCc-eEEEEeCCEEEEEEEecCCEEEEEEE
Confidence 45565664332 4455554421 1235444444 333333222221 12456678776666 67999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhcc
Q psy17615 71 MSEVPPLFVIEFLDRVVTTFHDYFN 95 (459)
Q Consensus 71 ~~~~n~~~~~~~L~~~~~~l~~y~~ 95 (459)
+.+-+--+++.+|+.+.+-+..-++
T Consensus 86 D~~yp~rvAF~~L~~i~~eF~~~y~ 110 (144)
T 3bw6_A 86 DKEYPVRPAYTLLNKILDEYLVAHP 110 (144)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcc
Confidence 9999999999999887776665555
No 19
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=84.28 E-value=11 Score=31.61 Aligned_cols=72 Identities=13% Similarity=0.192 Sum_probs=44.9
Q ss_pred CeeEEEEEcCCCCEEEEec-cCCCcccchHHHHHHHhhccCCC--CC---------CCCeEEc-------CCEEEEEE--
Q psy17615 1 MIHSLFIINSTSDIILEKH-WKRIISRSVCDYFFEAQNSVAKP--ED---------IPPIITT-------PHHYLISV-- 59 (459)
Q Consensus 1 MI~~i~Iln~~G~~l~~r~-y~~~~~~~~~~~f~~~~~~~~~~--~~---------~~pi~~~-------~~~~~v~~-- 59 (459)
||+++.|+..+|++++.-. +........+.+|..++.+.... .. --+++.+ +++.+.|+
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 9999999999999998644 22223445677788887764210 00 1246666 66655553
Q ss_pred EeCcEEEEEEEcC
Q psy17615 60 YRKGVFFVAVTMS 72 (459)
Q Consensus 60 ~~~~l~~v~~~~~ 72 (459)
+.-.||||++-..
T Consensus 81 kQP~LyfVvtyae 93 (158)
T 1nrj_A 81 KQPELYFVVTFAE 93 (158)
T ss_dssp ETTEEEEEEEESS
T ss_pred CCCcEEEEEEecc
Confidence 4567998888743
No 20
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=82.54 E-value=4.5 Score=34.32 Aligned_cols=89 Identities=15% Similarity=0.194 Sum_probs=52.3
Q ss_pred CeeEEEEEcCCCCEEEEeccCCCc----c-cc----------hHHHHHHHhhccCCCCCCCCeEEcCCE-EEEEEEeCcE
Q psy17615 1 MIHSLFIINSTSDIILEKHWKRII----S-RS----------VCDYFFEAQNSVAKPEDIPPIITTPHH-YLISVYRKGV 64 (459)
Q Consensus 1 MI~~i~Iln~~G~~l~~r~y~~~~----~-~~----------~~~~f~~~~~~~~~~~~~~pi~~~~~~-~~v~~~~~~l 64 (459)
||.+++|+|++|..|+.|.|.... + .. .+..+.+++.. ......--.+.++.+ ..+|.-..++
T Consensus 2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp-~~~~~~~~~~~t~~ykl~~~~T~Tgi 80 (145)
T 2j3t_C 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSP-LDMKDGFLSFQTSRYKLHYYETPTGI 80 (145)
T ss_dssp CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCS-SCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCC-CCCCCceEEEecCCEEEEEEEcCCCC
Confidence 589999999999999999995431 1 11 01223333321 111111133456665 4677778899
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH-HHHHH
Q psy17615 65 FFVAVTMSEVPPLFVIEFLDRVV-TTFHD 92 (459)
Q Consensus 65 ~~v~~~~~~~n~~~~~~~L~~~~-~~l~~ 92 (459)
-||++++..++. +=++|+++- ++.-+
T Consensus 81 KFvl~td~~~~~--i~~~l~~iy~~lYv~ 107 (145)
T 2j3t_C 81 KVVMNTDLGVGP--IRDVLHHIYSALYVE 107 (145)
T ss_dssp EEEEEECTTCCC--CHHHHHHHHHTTHHH
T ss_pred EEEEEecCCcch--HHHHHHHHHHHHHHH
Confidence 999999876443 224555555 44444
No 21
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=77.49 E-value=18 Score=32.21 Aligned_cols=93 Identities=15% Similarity=0.194 Sum_probs=59.5
Q ss_pred eeEEEEEcCCCC-EE-EEeccC----CCcccchHHHHH----HHhhccCCCCCCCCeEEcCCEEEE-EEEeCcEEEEEEE
Q psy17615 2 IHSLFIINSTSD-II-LEKHWK----RIISRSVCDYFF----EAQNSVAKPEDIPPIITTPHHYLI-SVYRKGVFFVAVT 70 (459)
Q Consensus 2 I~~i~Iln~~G~-~l-~~r~y~----~~~~~~~~~~f~----~~~~~~~~~~~~~pi~~~~~~~~v-~~~~~~l~~v~~~ 70 (459)
|.++.|+...|+ ++ ++..|. +...|+...+|. +.+.....+ ..---++.+++.|- |...+++.++|++
T Consensus 4 ~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~-~~r~s~~~~~y~fH~y~~~~gl~yl~it 82 (199)
T 3kyq_A 4 LYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK-GSRASVKEQEYLCHVYVRSDSLAGVVIA 82 (199)
T ss_dssp EEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT-TEEEEEECSSEEEEEEECTTSEEEEEEE
T ss_pred EEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC-CCeEEEEeCCEEEEEEEecCCEEEEEEE
Confidence 567788875553 33 344442 112354443332 344442211 11124566777766 7888999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhcc
Q psy17615 71 MSEVPPLFVIEFLDRVVTTFHDYFN 95 (459)
Q Consensus 71 ~~~~n~~~~~~~L~~~~~~l~~y~~ 95 (459)
+.+-+.-.++.||..+.+-+..-++
T Consensus 83 d~~yp~r~AF~fL~ei~~eF~~~~~ 107 (199)
T 3kyq_A 83 DSEYPSRVAFTLLEKVLDEFSKQVD 107 (199)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998888877776
No 22
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=76.37 E-value=18 Score=30.31 Aligned_cols=87 Identities=10% Similarity=0.010 Sum_probs=48.3
Q ss_pred eeEEEEEcCCCCEEEEeccCCCcccc---h------------HHHHHHHhhccCCCCCCCCeEE---cCCE-EEEEEEeC
Q psy17615 2 IHSLFIINSTSDIILEKHWKRIISRS---V------------CDYFFEAQNSVAKPEDIPPIIT---TPHH-YLISVYRK 62 (459)
Q Consensus 2 I~~i~Iln~~G~~l~~r~y~~~~~~~---~------------~~~f~~~~~~~~~~~~~~pi~~---~~~~-~~v~~~~~ 62 (459)
|.+|.|+|++|.+|+.+.|....... . ++.+.+.. +. ....-... .+++ .+.|....
T Consensus 6 i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~--~~--~~~~~l~~~~~~~~y~v~~~~T~t 81 (142)
T 2j3w_A 6 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENM--WL--SNNMYLKTVDKFNEWFVSAFVTAG 81 (142)
T ss_dssp CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHG--GG--CSCSEEEEEEEETTEEEEEEECTT
T ss_pred EEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhc--CC--CCcceeEeeecccceEEEEEEcCC
Confidence 68999999999999999996532110 0 11111111 11 11111222 3343 36777778
Q ss_pred cEEEEEEEcCCCChHHHHHHHHHHHHHHHHh
Q psy17615 63 GVFFVAVTMSEVPPLFVIEFLDRVVTTFHDY 93 (459)
Q Consensus 63 ~l~~v~~~~~~~n~~~~~~~L~~~~~~l~~y 93 (459)
++-||++++.. +.-.+-++++++-++.-+|
T Consensus 82 g~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~ 111 (142)
T 2j3w_A 82 HMRFIMLHDVR-QEDGIKNFFTDVYDLYIKF 111 (142)
T ss_dssp CCEEEEEESSC-CHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCC-CcHHHHHHHHHHHHHHHHH
Confidence 99999999763 2333444555554444443
No 23
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=70.91 E-value=11 Score=32.40 Aligned_cols=88 Identities=16% Similarity=0.253 Sum_probs=48.3
Q ss_pred CeeEEEEEcCCCCEEEEeccCCC-------cc-cch-------------HHHHHHHhhccCCCCCCCCe--EEcCCEE-E
Q psy17615 1 MIHSLFIINSTSDIILEKHWKRI-------IS-RSV-------------CDYFFEAQNSVAKPEDIPPI--ITTPHHY-L 56 (459)
Q Consensus 1 MI~~i~Iln~~G~~l~~r~y~~~-------~~-~~~-------------~~~f~~~~~~~~~~~~~~pi--~~~~~~~-~ 56 (459)
||.+|+|+|+.|..|..|.|... .+ +.. +..|.+++.. ......+ +.++.++ +
T Consensus 2 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~---~~~~~~f~~~~T~~ykl~ 78 (159)
T 3cue_C 2 GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSK---GSVKNDIRSISTGKYRVH 78 (159)
T ss_dssp CCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCC---SSSCCCEEEEECSSCBEE
T ss_pred eEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCC---CCCCCCeEEEeeCCEEEE
Confidence 58899999999999999999531 10 100 1112222211 1111223 3345543 6
Q ss_pred EEEEeCcEEEEEEEcCCCChHHHHHHHHHHHH-HHHHh
Q psy17615 57 ISVYRKGVFFVAVTMSEVPPLFVIEFLDRVVT-TFHDY 93 (459)
Q Consensus 57 v~~~~~~l~~v~~~~~~~n~~~~~~~L~~~~~-~l~~y 93 (459)
+|.--.++-||++++..++.+- ++|+++-+ +.-+|
T Consensus 79 ~~eT~TgiKFvl~td~~~~~i~--~~l~~iy~~lYv~y 114 (159)
T 3cue_C 79 TYCTASGLWFVLLSDFKQQSYT--QVLQYIYSHIYVKY 114 (159)
T ss_dssp EECCSSCCEEEEECCSSSSCTH--HHHHHHHHHHHHHH
T ss_pred EEEeCCCCEEEEEeCCCcchHH--HHHHHHHHHHHHHH
Confidence 6677789999999986644332 34455543 44443
No 24
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=24.75 E-value=1.3e+02 Score=24.50 Aligned_cols=20 Identities=25% Similarity=0.655 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHHHhhCCcc
Q psy17615 103 KDNYVVVYEILDEMLDNGFP 122 (459)
Q Consensus 103 ~~n~~~i~~lldE~id~G~p 122 (459)
+.+|..|..++.+|=+.|.|
T Consensus 88 ~~~~~~i~~Lmq~mQ~~G~P 107 (126)
T 2wl8_A 88 KARFEMVLDLMQQLQDLGHP 107 (126)
T ss_dssp HHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHcCCC
Confidence 35666777777777666655
No 25
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=22.22 E-value=2.1e+02 Score=23.60 Aligned_cols=25 Identities=8% Similarity=0.302 Sum_probs=20.2
Q ss_pred cCCCcceeecCCceEEEEEecccCC
Q psy17615 367 SGDQGKYTFDPIKKILTWDVGRIDI 391 (459)
Q Consensus 367 ~~~~g~~~~~~~~~~l~W~I~~~~~ 391 (459)
+.+.++++|+.++..+.=+++|...
T Consensus 59 e~~~~kA~YD~d~~~~~VtLpK~~~ 83 (134)
T 2k8q_A 59 DDERSTAQYDSKDECINVKVAKLNK 83 (134)
T ss_dssp CCSSCEEEEETTTTEEEEEEEESST
T ss_pred cCCCcceeEeccCCEEEEEEeCCCC
Confidence 4556788888899999999999665
No 26
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=20.57 E-value=3.2e+02 Score=21.83 Aligned_cols=25 Identities=8% Similarity=0.302 Sum_probs=20.1
Q ss_pred cCCCcceeecCCceEEEEEecccCC
Q psy17615 367 SGDQGKYTFDPIKKILTWDVGRIDI 391 (459)
Q Consensus 367 ~~~~g~~~~~~~~~~l~W~I~~~~~ 391 (459)
+.+.++++||..+..+.=+++|...
T Consensus 73 ed~~~~A~YD~d~g~~~v~lpK~~~ 97 (115)
T 3eud_A 73 DDERSTAQYDSKDECINVKVAKLNK 97 (115)
T ss_dssp CSTTCEEEEETTTTEEEEEEEESST
T ss_pred cCCCcceEEeCCCcEEEEEEcCCcC
Confidence 4455688899899999999999765
Done!