RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17615
(459 letters)
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Rattus
norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Length = 435
Score = 271 bits (694), Expect = 6e-87
Identities = 106/488 (21%), Positives = 180/488 (36%), Gaps = 85/488 (17%)
Query: 1 MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVY 60
MI LFI N ++++ + ++ I R+ D F A+ + P+ V
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIH-ARQQVRSPVTNIARTSFFHVK 59
Query: 61 RKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNG 120
R ++ AVT V V EFL ++ YF SE +K+N+V++YE+LDE+LD G
Sbjct: 60 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 119
Query: 121 FPLATESNVLKELIKPPNILRTIANTMTGGSNVSSILPSGQLSSVPWRRTGGSNVSSILP 180
+P +E+ LK I I S +
Sbjct: 120 YPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTG---------------------- 157
Query: 181 SGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDL 240
+ WRR G+KY NE + DV+E V+ ++ G + + + G + LSGMP+
Sbjct: 158 -----QIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPEC 212
Query: 241 TLSFMNPRL---------------------FDDVSFHPCVRFKRWEAERILSFIPPDGNF 279
+ + DD +FH CVR ++++ER +SFIPPDG F
Sbjct: 213 KFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEF 272
Query: 280 RLMSYHINTQNLVAIPLYINHNIN-FKQNKIDMTIGPKQTIGR--TIENIVIEIPMPSVV 336
LM Y + +P + + + K+++ + K + I + IP P
Sbjct: 273 ELMRYRTTKD--IILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNT 330
Query: 337 LNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLP 396
++ +GK + + + W + K
Sbjct: 331 SGVQVICMKGKAKYKASENAIVWKIKRMAGM--------------------------KES 364
Query: 397 NIRGSFTVQSGQ-----ENHNFNLTINVKFTINQLAISGLKVNRLDMYGEKYKPFKGVKY 451
I + ++ V F + L + LKV + + K V+Y
Sbjct: 365 QISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRY 424
Query: 452 ITTGGTFQ 459
I G ++
Sbjct: 425 IGRSGIYE 432
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 423
Score = 263 bits (671), Expect = 1e-83
Identities = 119/475 (25%), Positives = 199/475 (41%), Gaps = 75/475 (15%)
Query: 2 IHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYR 61
++++++ +++ ++++ + S ++F + + PI+ + +
Sbjct: 3 ASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKH 62
Query: 62 KGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGF 121
++ VA + V FL +VV F +YF + E ++DN+V++YE+LDE++D G+
Sbjct: 63 NNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGY 122
Query: 122 PLATESNVLKELIKPPNILRTIANTMTGGSNVSSILPSGQLSSVPWRRTGGSNVSSILPS 181
P T+S +L+E I P+
Sbjct: 123 PQTTDSKILQEFITQEGHKLETGAPR-------------------------------PPA 151
Query: 182 GQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLT 241
++V WR G+KY NE + DVIE V+ ++ G+ + SEI G I + LSGMP+L
Sbjct: 152 TVTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELR 211
Query: 242 LSFMNPRLF-------------DDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINT 288
L + LF +DV FH CVR R+E +R +SFIPPDG F LMSY +NT
Sbjct: 212 LGLNDKVLFDNTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNT 271
Query: 289 QNLVAIPLYINHNINFKQNKIDMTIGPKQTIGR--TIENIVIEIPMPSVVLNCTLLQNQG 346
I + ++I+ + K R T N+ I IP+P+ + G
Sbjct: 272 HVKPLIWIESVIE-KHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVG 330
Query: 347 KYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRGSFTVQS 406
+ P + W + S K +R F + S
Sbjct: 331 SVKWVPENSEIVWSVKSFPGG--------------------------KEYLMRAHFGLPS 364
Query: 407 -GQENHNFNLTINVKFTINQLAISGLKVNRLDMYGEK-YKPFKGVKYITTGGTFQ 459
E+ I+VKF I SG++V L + + Y+ V+YIT G +Q
Sbjct: 365 VEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQAIPWVRYITQNGDYQ 419
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich,
coated PIT, golgi apparat membrane, phosphoprotein,
protein transport, transport; 1.60A {Homo sapiens}
Length = 301
Score = 210 bits (536), Expect = 4e-65
Identities = 51/315 (16%), Positives = 106/315 (33%), Gaps = 57/315 (18%)
Query: 176 SSILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLS 235
S + PS S + NE + DV+E + +I GS + ++QG I L
Sbjct: 10 SKVAPSSAASRPVLSSRSDQSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLP 69
Query: 236 GMPDLTLSFMNPRL--------------FDDVSFHPCVRFKRWEAERILSFIPPDGNFRL 281
++ + D+VSFH V +E+ RIL PP G +
Sbjct: 70 SGSEMRIGLTEEFSVGKSELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTV 129
Query: 282 MSYHINTQNLVAIPLYINHNINFKQN--KIDMTIGPKQTIGRTI--ENIVIEIPMPSVVL 337
M Y ++ +P + ++ + + ++ + + + + N+ + +P+P V+
Sbjct: 130 MRYQLSDDLPSPLPFRLFPSVQWDRGSGRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVV 189
Query: 338 NCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLPN 397
+ + + + + + L WDL +
Sbjct: 190 SLSQELSSPEQKAELAEGALRWDLPRV--------------------------QGGSQLS 223
Query: 398 IRGSFTVQSGQENHNFNLT----------INVKFTINQLAISGLKVNRLDMY---GEKYK 444
V + L+ ++ F + + SGL+V L +
Sbjct: 224 GLFQMDVPGPPGPPSHGLSTSASPLGLGPASLSFELPRHTCSGLQVRFLRLAFRPSGNAN 283
Query: 445 PFKGVKYITTGGTFQ 459
P K V++++ +
Sbjct: 284 PHKWVRHLSHSDAYV 298
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin
adaptor AP-2 complex...; dishevelled, frizzled
internalization; 3.50A {Mus musculus}
Length = 385
Score = 211 bits (537), Expect = 4e-64
Identities = 71/387 (18%), Positives = 133/387 (34%), Gaps = 73/387 (18%)
Query: 105 NYVVVYEILDEMLDN--GFPLATESNVLKELIKPPNILRTIANTMTGGSNVSSILPSGQL 162
N + +++D + + GFP E+ + ++R N +T +
Sbjct: 37 NAFLGSDVVDWLYHHVEGFPERREARKYASGLLKAGLIRHTVNKITFSEQCYYVFGDLSG 96
Query: 163 SSVPWRRTGGSNVSSILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFS 222
P+ G + NE + DV+E V+ ++ G + +
Sbjct: 97 GPRPYSPQ------------PPPYHELEFGGSGGSRNELFLDVLESVNLLMSPQGQVLSA 144
Query: 223 EIQGYIDCCIKLSGMPDLTLSFMNPRLF---------------------DDVSFHPCVRF 261
+ G + LSGMP+ + + DD +FH CVR
Sbjct: 145 HVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRL 204
Query: 262 KRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINHNINF-KQNKIDMTIGPKQTIG 320
++++ER +SFIPPDG F LM Y + +P + + + K+++ + K
Sbjct: 205 SKFDSERSISFIPPDGEFELMRYRTTKD--IILPFRVIPLVREVGRTKLEVKVVIKSNFK 262
Query: 321 R--TIENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPI 378
+ I + IP P ++ +GK + + + W +
Sbjct: 263 PSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGM----------- 311
Query: 379 KKILTWDVGRIDIENKLPNIRGSFTV-QSGQENHNFNLTINVKFTINQLAISGLKVNRLD 437
K I + + + I++ F + A SGLKV L
Sbjct: 312 ---------------KESQISAEIELLPTNDKKKWARPPISMNFEV-PFAPSGLKVRYLK 355
Query: 438 MYGEK-----YKPFKGVKYITTGGTFQ 459
++ K + K V+YI G ++
Sbjct: 356 VFEPKLNYSDHDVIKWVRYIGRSGIYE 382
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding
site, protein-peptide complex, clathrin adaptor; 2.50A
{Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A
3h85_A 1bxx_A 1hes_A 1h6e_A
Length = 314
Score = 204 bits (520), Expect = 1e-62
Identities = 73/365 (20%), Positives = 126/365 (34%), Gaps = 86/365 (23%)
Query: 125 TESNVLKELIKPPNILRTIANTMTGGSNVSSILPSGQLSSVPWRRTGGSNVSSILPSGQL 184
+E+ LK I I S + S
Sbjct: 3 SETGALKTFITQQGIKSQHQTKEE---------------------------QSQITSQVT 35
Query: 185 SSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSF 244
+ WRR G+KY NE + DV+E V+ ++ G + + + G + LSGMP+
Sbjct: 36 GQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGM 95
Query: 245 MNPRL---------------------FDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMS 283
+ + DD +FH CVR ++++ER +SFIPPDG F LM
Sbjct: 96 NDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMR 155
Query: 284 YHINTQNLVAIPLYINHNINF-KQNKIDMTIGPKQTIGR--TIENIVIEIPMPSVVLNCT 340
Y + +P + + + K+++ + K + I + IP P
Sbjct: 156 YRTTKD--IILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQ 213
Query: 341 LLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRG 400
++ +GK + + + W + K I
Sbjct: 214 VICMKGKAKYKASENAIVWKIKRMAGM--------------------------KESQISA 247
Query: 401 SFTV-QSGQENHNFNLTINVKFTINQLAISGLKVNRLDMYGEK-----YKPFKGVKYITT 454
+ + + I++ F + A SGLKV L ++ K + K V+YI
Sbjct: 248 EIELLPTNDKKKWARPPISMNFEV-PFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGR 306
Query: 455 GGTFQ 459
G ++
Sbjct: 307 SGIYE 311
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV,
NEF, antigen presentation, HOST defense, adaptor protein
complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Length = 266
Score = 190 bits (484), Expect = 7e-58
Identities = 86/288 (29%), Positives = 125/288 (43%), Gaps = 44/288 (15%)
Query: 189 WRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNPR 248
WR G+KY NE + DVIE V+ ++ G+ + SEI G I + LSGMP+L L +
Sbjct: 2 WRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKV 61
Query: 249 LF-------------DDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIP 295
LF +DV FH CVR R+E +R +SFIPPDG F LMSY +NT I
Sbjct: 62 LFDNTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIW 121
Query: 296 LYINHNINFKQNKIDMTIGPKQTIGR--TIENIVIEIPMPSVVLNCTLLQNQGKYTFDPI 353
+ + ++I+ + K R T N+ I IP+P+ + G + P
Sbjct: 122 IESVIEKH-SHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPE 180
Query: 354 KKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRGSFTVQS-GQENHN 412
+ W + S K +R F + S E+
Sbjct: 181 NSEIVWSVKSFPGG--------------------------KEYLMRAHFGLPSVEAEDKE 214
Query: 413 FNLTINVKFTINQLAISGLKVNRLDMYGEK-YKPFKGVKYITTGGTFQ 459
I+VKF I SG++V L + + Y+ V+YIT G +Q
Sbjct: 215 GKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQ 262
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 158
Score = 105 bits (264), Expect = 2e-27
Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 1/147 (0%)
Query: 1 MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSV-AKPEDIPPIITTPHHYLISV 59
M+ + + + + L+K + + E V A+ + + ++
Sbjct: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
Query: 60 YRKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDN 119
++F + L +E + R V YF E + N+ Y ILDE L
Sbjct: 61 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120
Query: 120 GFPLATESNVLKELIKPPNILRTIANT 146
G T + + I+ ++L+ +
Sbjct: 121 GDVQDTSKKSVLKAIEQADLLQEEDES 147
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Mus
musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Length = 142
Score = 98.9 bits (246), Expect = 6e-25
Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 2/136 (1%)
Query: 1 MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAK-PEDIPPIITTPHHYLISV 59
MI + I N L K + + E V + + +I
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 60 YRKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDN 119
G++F L +E + V ++YF++ E L N+ VY ++DEM
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 120 GFPLAT-ESNVLKELI 134
G T ++ VLK+L+
Sbjct: 121 GEIRETSQTKVLKQLL 136
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus} PDB: 2hf6_A
Length = 153
Score = 71.5 bits (175), Expect = 4e-15
Identities = 17/136 (12%), Positives = 48/136 (35%), Gaps = 1/136 (0%)
Query: 1 MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVY 60
+ ++ I+++ D + K++ FE I ++
Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKS 71
Query: 61 RKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYF-NDCSESVLKDNYVVVYEILDEMLDN 119
++F + S L ++ L+ + + + + L +N ++ +DE++D
Sbjct: 72 SIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDG 131
Query: 120 GFPLATESNVLKELIK 135
G L ++ + +
Sbjct: 132 GVILESDPQQVVHRVA 147
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 7e-07
Identities = 49/318 (15%), Positives = 94/318 (29%), Gaps = 105/318 (33%)
Query: 3 HSL--FIINSTSDIILEKHWKRIISRSVCDYFFEAQ------NSVAKP-----EDIPPII 49
+S ++ S LE ++ + +F +Q + +P D P
Sbjct: 4 YSTRPLTLSHGS---LEHVL--LVPTA--SFFIASQLQEQFNKILPEPTEGFAADDEP-- 54
Query: 50 TTPHHYLISVYRKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVV 109
TTP + F+ S V P V +F D+V+ F + L+ N
Sbjct: 55 TTPAELVGK-------FLGYVSSLVEPSKVGQF-DQVLNLCLTEFEN---CYLEGN---- 99
Query: 110 YEILDEMLDNGFPLATESNVLKELIKPPNILRT-IANTMTGGSNVSSILPSGQLSSVPWR 168
+I + L+K +++ I + S +V
Sbjct: 100 -DI------HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV--- 149
Query: 169 RTGGSNVSSILPSGQLSSVPWRRTGVKYTNNEAYFDVIEE--------VDAIIDKTGSTI 220
G + + +I GQ G N + YF+ + + V +I + T+
Sbjct: 150 GEGNAQLVAIFG-GQ---------G----NTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 221 FSEIQGYIDCCIKLSGMPDLTLSFMNPRLFDDVSFHPCVRFKRW--EAERILSFIPPDGN 278
I+ +D + + + W PD +
Sbjct: 196 SELIRTTLDA------------EKVFTQGLN---------ILEWLENPSN-----TPDKD 229
Query: 279 FRLMSYHINTQNLVAIPL 296
+ L+S ++ PL
Sbjct: 230 Y-LLSI------PISCPL 240
Score = 48.5 bits (115), Expect = 4e-06
Identities = 79/447 (17%), Positives = 136/447 (30%), Gaps = 164/447 (36%)
Query: 2 IHSL-FIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPP------------- 47
IH+L + +D L K K +I ++ + A+ +P D
Sbjct: 101 IHALAAKLLQENDTTLVKT-KELI-KN----YITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 48 -IIT------TPHHY---LISVYRKGVFFV--------------AVTMSEVPPLF----- 78
++ Y L +Y+ V T + +F
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 79 VIEFLDRVVTT-FHDYFNDCSESV----LKD--NYVVVYEILD----EMLDNGFPLATES 127
++E+L+ T DY S + +YVV ++L E+ L +
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY---LKGAT 271
Query: 128 NVLKELIKPPNILRTIANTMTGGS---NVSSILPSGQLSSVPWRRTGGSNVSSILPSGQL 184
+ L+ IA T + S +V + L + R +S+ PS
Sbjct: 272 GHSQGLVTA----VAIAETDSWESFFVSVRKAI--TVLFFIGVRCYEAYPNTSLPPSILE 325
Query: 185 SSVPWRRTGVKYTNNEAY----FDVI----EEVDAIIDKTGSTIFSEIQGYI------DC 230
S+ NNE + E+V ++KT S + + Q I
Sbjct: 326 DSL---------ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 231 CIKLSGMPDLTLSFMNPRL--------------------------FDDVS--FH-----P 257
+ +SG P +L +N L F V+ FH P
Sbjct: 377 LV-VSGPP-QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP 434
Query: 258 CV-RFKRWEAERILSF------IP----PDG-NFRLMSYHINTQNLV-AI---PLY---- 297
+ + +SF IP DG + R++S I ++ +V I P+
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI-SERIVDCIIRLPVKWETT 493
Query: 298 ----INHNINFKQNKIDMTIGPKQTIG 320
H ++F GP G
Sbjct: 494 TQFKATHILDF---------GPGGASG 511
Score = 48.1 bits (114), Expect = 6e-06
Identities = 30/139 (21%), Positives = 44/139 (31%), Gaps = 31/139 (22%)
Query: 69 VTMSEVPPLFVIEFLDRVVTT-FH-DYFNDCSESVLKDNYVVVYEILDEMLDNGFPL-AT 125
+ SE F FL V + FH S+ + KD + + P+ T
Sbjct: 407 IPFSERKLKFSNRFL--PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI--QIPVYDT 462
Query: 126 ESNV-LKELIKPPNILRTIANTMTGGSNVSSILPSGQLSSVPWRRTGGSNVSSIL---PS 181
L+ L +I I + + LP V W T + IL P
Sbjct: 463 FDGSDLRVL--SGSISERIVDCII-------RLP------VKWETTTQFKATHILDFGPG 507
Query: 182 -----GQLSSVPWRRTGVK 195
G L+ TGV+
Sbjct: 508 GASGLGVLTHRNKDGTGVR 526
Score = 31.6 bits (71), Expect = 0.62
Identities = 24/125 (19%), Positives = 39/125 (31%), Gaps = 39/125 (31%)
Query: 343 QNQG----KY-TFDPIKKILTW---DLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENK 394
Q QG Y T + + W D H + Y F I I + N
Sbjct: 1627 QEQGMGMDLYKTSKAAQDV--WNRADNHFKD------TYGFS-ILDI---------VINN 1668
Query: 395 LPNIRGSFTVQSGQENHNFNLTINVKFTINQLAISGLKVNRLDMYGEKYKPFKGVKYITT 454
N+ F + G+ I + + + +D + K FK + +T
Sbjct: 1669 PVNLTIHFGGEKGKR-------------IRENYSAMIFETIVDGKLKTEKIFKEINEHST 1715
Query: 455 GGTFQ 459
TF+
Sbjct: 1716 SYTFR 1720
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 2e-06
Identities = 70/506 (13%), Positives = 141/506 (27%), Gaps = 140/506 (27%)
Query: 15 ILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEV 74
IL + C + S+ E+I II + + R
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA-VSGTLR------------- 66
Query: 75 PPLFVIEFLDRVVTTFHDYFNDCSESVLKDNY-----------------VVVYEILDEML 117
LF L + + E VL+ NY +Y + L
Sbjct: 67 --LFWT-LLSKQEEMVQKFV----EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 118 DNGFPLATESNV------------LKELIKPPNILRTIANTMTG-GSNV---SSILPSGQ 161
N + + NV L EL N+ + + + G G L
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV---LIDGVLGSGKTWVALDVCLSYKV 176
Query: 162 LSSVP----WRRTGGSNVSSILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTG 217
+ W N + L + ++ + ++ ++ + +I +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLE-MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL- 234
Query: 218 STIFSEIQGYIDCCIKLSGMPDLTLSFMNPRLFDDVSFHPCVRFKRWEAERILSFIPPDG 277
+ + Y +C + L +V A+ +F +
Sbjct: 235 RRLLKS-KPYENCLLVL----------------LNV----------QNAKAWNAF---NL 264
Query: 278 NFRLMSYHINTQNL-VAIPLYINHNINFKQNKIDMTIGPKQTIG---RTIENIVIEIP-- 331
+ +++ + T+ V L + + MT+ P + + ++ ++P
Sbjct: 265 SCKIL---LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 332 ----MPSVVLNCTLLQNQGKYTFDPIKKILTWDLHST-ERSGD-------QGKYT----F 375
P + G T+D K + L + E S + + + F
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 376 D-----PIK--KILTWDVGRIDIENKLPNIRGSFTVQSGQENHNFNLTINVKFTINQLAI 428
P ++ +DV + D+ + S E TI +I + +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVM----VVVNKLHKYSLVEKQPKESTI----SIPSIYL 433
Query: 429 SGLKVNRLDMYG------EKYKPFKG 448
LKV + Y + Y K
Sbjct: 434 E-LKVKLENEYALHRSIVDHYNIPKT 458
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 32.8 bits (74), Expect = 0.19
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 324 ENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILT-WD 360
ENI IE+P ++ + + D + K T WD
Sbjct: 172 ENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWD 209
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.5
Identities = 4/29 (13%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 316 KQTIGRTIEN-IVIEIP--MPSVVLNCTL 341
KQ + + ++ + + P++ + T+
Sbjct: 19 KQAL-KKLQASLKLYADDSAPALAIKATM 46
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase;
2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Length = 375
Score = 29.7 bits (67), Expect = 1.8
Identities = 6/38 (15%), Positives = 10/38 (26%), Gaps = 1/38 (2%)
Query: 207 EEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSF 244
E ++ + Y+ C MP L
Sbjct: 273 EFLNKFFANLNVIKVPFLPFYVTTC-DNKEMPTLEFKS 309
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate
pathway, isoprenoid biosynthesis, transferase; HET: ADP;
2.00A {Escherichia coli} PDB: 1oj4_A*
Length = 283
Score = 28.7 bits (65), Expect = 4.1
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 92 DYFNDCSESVLKDNYVVVYEILDEMLDNGFPLATES 127
++ NDC E + + + V +L +L+ T +
Sbjct: 206 EFSNDC-EVIARKRFREVDAVLSWLLEYAPSRLTGT 240
>3maz_A Signal-transducing adaptor protein 1; modular domain,
phosphotyrosine, specificity, cytoplasm, phosphoprotein,
SH2 domain, signaling protein; HET: PTR; 1.90A {Homo
sapiens}
Length = 125
Score = 27.5 bits (61), Expect = 5.4
Identities = 8/25 (32%), Positives = 9/25 (36%), Gaps = 2/25 (8%)
Query: 255 FHPCVRFKRWEAERILSFIPPDGNF 279
V R EA +L P GN
Sbjct: 18 CFYTV--SRKEATEMLQKNPSLGNM 40
>3sd7_A Putative phosphatase; structural genomics, haloacid
dehalogenase-like hydrolase, H center for structural
genomics of infectious diseases; HET: PGE; 1.70A
{Clostridium difficile}
Length = 240
Score = 28.0 bits (63), Expect = 5.9
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 81 EFLDRVVTTFHDYF--NDCSESVLKDNYVVVYEILDEMLDNGFPLATESN 128
+ V + +YF E+ + +N + EIL+ + NG L ++
Sbjct: 88 KKAKEAVEKYREYFADKGIFENKIYEN---MKEILEMLYKNGKILLVATS 134
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural
genomics, protein structure initiative; 1.93A
{Clostridium acetobutylicum}
Length = 226
Score = 27.9 bits (63), Expect = 6.6
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 81 EFLDRVVTTFHDYF--NDCSESVLKDNYVVVYEILDEMLDNGFPLATESN 128
E + + DYF E+ + D + +L + D GF L ++
Sbjct: 64 ETATVAIDYYRDYFKAKGMFENKVYDG---IEALLSSLKDYGFHLVVATS 110
>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Bacteroides
fragilis nctc 9343}
Length = 225
Score = 27.5 bits (62), Expect = 7.2
Identities = 5/60 (8%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Query: 67 VAVTMSEVPPLFVIEFLDRVVTTFHDYF--NDCSESVLKDNYVVVYEILDEMLDNGFPLA 124
+ + S + + + L+ + + ++L + L + G +
Sbjct: 53 LEESFSILTGITDADQLESFRQEYSKEADIYMNANTILFPD---TLPTLTHLKKQGIRIG 109
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane
targeting, GTPase, GAP, longin domain, SEDL, transport
protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4
PDB: 2go5_1
Length = 185
Score = 27.4 bits (60), Expect = 7.7
Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 14/102 (13%)
Query: 63 GVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFP 122
+ FV + +V + +D V F D + ++ + N F
Sbjct: 72 ELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRT----EIQQQSALSLLNGTFDFQNDF- 126
Query: 123 LATESNVLKEL-----IKPPNILRTIANTMTGGSNVSSILPS 159
+L+E I+ P ++ ++ V S++ +
Sbjct: 127 ----LRLLREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIET 164
>2vf1_A Capsid protein; dsRNA virus structure, viral protein,
triacontahedron; 3.40A {Rabbit picobirnavirus}
Length = 525
Score = 27.9 bits (61), Expect = 7.7
Identities = 9/52 (17%), Positives = 19/52 (36%)
Query: 67 VAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLD 118
V + E + V T+ +F+ + + D+ Y ++ LD
Sbjct: 408 RNVLYFKNVWNDAAEDASQRVITYFSHFSQITVTNATDDPTSAYGLMSNTLD 459
>4aw7_A GH86A beta-porphyranase; hydrolase, porphyran-hexa-oligosaccharide,
complex; HET: GLA GAL L6S AAL; 1.33A {Bacteroides
plebeius}
Length = 591
Score = 28.2 bits (62), Expect = 7.8
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 168 RRTGGSNVSSILPSGQLSSVPWRRTGVKYTNNEAYFDVIE-EVDAIIDKTGST----IFS 222
R S + +G SVP G +N +F +IE D + K G FS
Sbjct: 513 RPVSASKKPVVKINGTAVSVPDNWKGYGQSNRNIFFGMIEVPFDIQLLKNGDNNVDITFS 572
Query: 223 EIQGYIDCCI 232
+ G++ I
Sbjct: 573 DGGGHVSSMI 582
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.418
Gapped
Lambda K H
0.267 0.0474 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,302,528
Number of extensions: 451108
Number of successful extensions: 903
Number of sequences better than 10.0: 1
Number of HSP's gapped: 861
Number of HSP's successfully gapped: 31
Length of query: 459
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 362
Effective length of database: 3,993,456
Effective search space: 1445631072
Effective search space used: 1445631072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.1 bits)