RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17615
(459 letters)
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit
(ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 277
Score = 221 bits (565), Expect = 4e-70
Identities = 67/303 (22%), Positives = 119/303 (39%), Gaps = 59/303 (19%)
Query: 187 VPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMN 246
+ WRR G+KY NE + DV+E V+ ++ G + + + G + LSGMP+ +
Sbjct: 1 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 60
Query: 247 PRLF---------------------DDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYH 285
+ DD +FH CVR ++++ER +SFIPPDG F LM Y
Sbjct: 61 KIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR 120
Query: 286 INTQNLVAIPLYINHNINF-KQNKIDMTIGPKQTIGRTI--ENIVIEIPMPSVVLNCTLL 342
T + +P + + + K+++ + K ++ + I + IP P ++
Sbjct: 121 --TTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVI 178
Query: 343 QNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRGSF 402
+GK + + + W + K I
Sbjct: 179 CMKGKAKYKASENAIVWKIKRMAGM--------------------------KESQISAEI 212
Query: 403 TVQSGQENHNF-NLTINVKFTINQLAISGLKVNRLDMYGEK-----YKPFKGVKYITTGG 456
+ + + I++ F + A SGLKV L ++ K + K V+YI G
Sbjct: 213 ELLPTNDKKKWARPPISMNFEV-PFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSG 271
Query: 457 TFQ 459
++
Sbjct: 272 IYE 274
>d2vglm2 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat assembly
protein AP50) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 141
Score = 131 bits (331), Expect = 2e-37
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Query: 1 MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVY 60
MI LFI N ++++ + ++ I R+ D F A+ + P+ V
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIH-ARQQVRSPVTNIARTSFFHVK 59
Query: 61 RKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNG 120
R ++ AVT V V EFL ++ YF SE +K+N+V++YE+LDE+LD G
Sbjct: 60 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 119
Query: 121 FPLATESNVLKELIKPPNI 139
+P +E+ LK I I
Sbjct: 120 YPQNSETGALKTFITQQGI 138
>d2vgls_ d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assembly
protein AP17) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 142
Score = 97.7 bits (243), Expect = 6e-25
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 2/136 (1%)
Query: 1 MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAK-PEDIPPIITTPHHYLISV 59
MI + I N L K + + E V + + +I
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 60 YRKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDN 119
G++F L +E + V ++YF++ E L N+ VY ++DEM
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 120 GFPLATE-SNVLKELI 134
G T + VLK+L+
Sbjct: 121 GEIRETSQTKVLKQLL 136
>d1jxca_ g.3.7.5 (A:) Trypsin/chymotrypsin inhibitor ATT {Mouse-ear
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 68
Score = 27.1 bits (60), Expect = 0.82
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 222 SEIQGYIDCCIKLSGMPDLTLSFMNPRLFDDVSFHPCVRFK 262
EI+ + C+K G D+ F PR+F + + C K
Sbjct: 2 PEIEAQGNECLKEYGG-DVGFGFCAPRIFPTICYTRCRENK 41
>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 103
Score = 25.8 bits (56), Expect = 4.4
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 255 FHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINHNINFKQNK------ 308
+H C+ + E E +L DGNF + L + +++ +
Sbjct: 6 YHGCL--TKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYY 63
Query: 309 -IDMTIGPKQTIGRTIENIVIEIPMPSVVLNCTLLQ 343
I+ +TI ++ +V + P L L
Sbjct: 64 RIETDAHTPRTIFPNLQELVSKYGKPGQGLVVHLSN 99
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 132
Score = 26.4 bits (57), Expect = 4.8
Identities = 8/65 (12%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 266 AERILSFIPPDGNFRLMSYHINTQNLVAIPLYINHNIN---FKQNKIDMTIGPKQTIGRT 322
A+ ++ + + S + + I+ F++ +D+ + P+
Sbjct: 66 ADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPELIAANY 125
Query: 323 IENIV 327
IE ++
Sbjct: 126 IEKLI 130
>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor
alpha subunit, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 129
Score = 25.9 bits (57), Expect = 6.8
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 9/73 (12%)
Query: 63 GVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFP 122
+ FV + +V + +D V F D + ++ + N F
Sbjct: 63 ELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRT----EIQQQSALSLLNGTFDFQNDF- 117
Query: 123 LATESNVLKELIK 135
+L+E +
Sbjct: 118 ----LRLLREAEE 126
>d2dcfa1 e.3.1.1 (A:5-392) 6-aminohexanoate-dimer hydrolase NylC
{Flavobacterium sp. [TaxId: 239]}
Length = 388
Score = 26.2 bits (56), Expect = 9.8
Identities = 10/56 (17%), Positives = 24/56 (42%)
Query: 166 PWRRTGGSNVSSILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIF 221
P R +++ ++PS +S P G A + +++ +++T + F
Sbjct: 26 PHNRWAFAHLGEMVPSAAVSRRPVNAPGHALARLGAIAAQLPDLEQRLEQTYTDAF 81
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.418
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,824,925
Number of extensions: 89526
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 15
Length of query: 459
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 371
Effective length of database: 1,199,356
Effective search space: 444961076
Effective search space used: 444961076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.3 bits)