Query psy17618
Match_columns 164
No_of_seqs 107 out of 562
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 18:39:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0938|consensus 100.0 1.1E-43 2.5E-48 304.3 13.8 136 15-153 163-325 (446)
2 KOG2740|consensus 100.0 4.6E-39 1E-43 277.2 14.1 143 4-147 152-294 (418)
3 PF00928 Adap_comp_sub: Adapto 100.0 6.7E-38 1.5E-42 258.6 17.9 134 18-154 1-141 (262)
4 KOG0937|consensus 100.0 4.5E-36 9.8E-41 263.7 13.1 139 9-151 146-299 (424)
5 KOG2677|consensus 99.9 1.5E-22 3.3E-27 184.8 6.2 128 17-147 574-723 (922)
6 PF10291 muHD: Muniscin C-term 97.4 0.012 2.7E-07 49.5 14.7 121 32-155 3-135 (257)
7 KOG2635|consensus 97.3 0.0051 1.1E-07 55.7 12.1 117 29-146 274-400 (512)
8 PF07151 DUF1391: Protein of u 42.8 27 0.00059 22.1 2.4 16 103-118 16-31 (49)
9 KOG0283|consensus 31.6 2.4E+02 0.0051 27.6 7.8 84 38-151 410-494 (712)
10 PF08142 AARP2CN: AARP2CN (NUC 27.3 1.3E+02 0.0028 21.0 4.1 49 11-69 10-58 (85)
11 cd07253 Glo_EDI_BRP_like_2 Thi 26.8 57 0.0012 22.1 2.2 17 99-115 108-125 (125)
12 KOG2116|consensus 25.6 59 0.0013 31.5 2.7 54 21-75 494-558 (738)
13 PF08652 RAI1: RAI1 like PD-(D 24.7 15 0.00032 24.9 -1.1 19 61-79 45-63 (69)
14 PF10438 Cyc-maltodext_C: Cycl 22.8 71 0.0015 22.2 2.0 18 100-117 2-19 (78)
15 PF13351 DUF4099: Protein of u 22.0 1.6E+02 0.0036 20.4 3.8 32 96-128 52-84 (85)
16 COG1570 XseA Exonuclease VII, 21.6 3.5E+02 0.0075 25.0 6.7 64 56-119 23-100 (440)
17 PF13464 DUF4115: Domain of un 21.4 2.6E+02 0.0056 18.6 6.9 72 34-106 3-77 (77)
No 1
>KOG0938|consensus
Probab=100.00 E-value=1.1e-43 Score=304.29 Aligned_cols=136 Identities=33% Similarity=0.688 Sum_probs=129.8
Q ss_pred CCCCccccCCcccccceEEEEEEeeEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeeEEEecCC----------------
Q psy17618 15 LSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNP---------------- 78 (164)
Q Consensus 15 ~~~~~WR~~~~~y~knEI~vdV~E~v~~~~~~~G~i~~~~I~G~I~~~s~LsG~P~v~l~Ln~~---------------- 78 (164)
+..++||+.|++|+|||+|+||.|+++.+++.+|+++++.|+|.|.|+|+|||||+|+++|||.
T Consensus 163 ~G~i~WRr~Gi~ykknevfldvvErvNlLmS~~GnVLrs~VsG~V~mk~~LSGmPeckfGlNDkl~~e~kq~esks~~~n 242 (446)
T KOG0938|consen 163 TGKIGWRREGIKYKKNEVFLDVVERVNLLMSSDGNVLRSDVSGTVDMKTHLSGMPECKFGLNDKLGMESKQSESKSDFGN 242 (446)
T ss_pred ccccccccccceeccceeEeEehheeeeEEcCCCCEEEeecccEEEEEEeccCCcccccccCcccceeeccccccccccc
Confidence 4579999999999999999999999999999999999999999999999999999999999964
Q ss_pred -----------cccccccccceeecccccccceEEEeCCCCcEEEEEEEecCCCCCCCCCceEecEEEEecCCeEEEEEE
Q psy17618 79 -----------RLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHTRVSGSNGGRPNASCPSFHRMVTSASCLTIR 147 (164)
Q Consensus 79 -----------~~l~d~~fH~CV~~~~~~~~r~i~F~PPdG~F~Lm~Yr~~~~~~~~~lP~~v~~~~~~~~~~~v~l~v~ 147 (164)
+.|+||.||+||++++|++++.|+|+||||+|+||+||++ ++..+||+|.|.+++.|.++++|++.
T Consensus 243 ~~~~sks~~g~v~leDc~FHqCV~L~kFn~eh~IsFvPPDGe~ELMkYr~~---enInlPFrV~PiV~el~r~kie~ri~ 319 (446)
T KOG0938|consen 243 KNFPSKSGKGSVLLEDCTFHQCVRLDKFNSEHIISFVPPDGEFELMKYRVT---ENINLPFRVTPIVTELGRTKIEYRIT 319 (446)
T ss_pred cCCCcccCCceEEeeccchheeeccccccccceEEEeCCCCceEeEeeeec---cCcccceEeeeheecccceeEEEEEE
Confidence 3699999999999999999999999999999999999999 56789999999999999999999999
Q ss_pred EEeecc
Q psy17618 148 IRKVKK 153 (164)
Q Consensus 148 Lk~~~~ 153 (164)
||+++.
T Consensus 320 iks~f~ 325 (446)
T KOG0938|consen 320 IKSLFP 325 (446)
T ss_pred EeccCC
Confidence 999874
No 2
>KOG2740|consensus
Probab=100.00 E-value=4.6e-39 Score=277.18 Aligned_cols=143 Identities=57% Similarity=0.983 Sum_probs=132.6
Q ss_pred ccCCCCCCCCCCCCCccccCCcccccceEEEEEEeeEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeeEEEecCCccccc
Q psy17618 4 VYVSSILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNPRLFDD 83 (164)
Q Consensus 4 ~~~~~~~~~~~~~~~~WR~~~~~y~knEI~vdV~E~v~~~~~~~G~i~~~~I~G~I~~~s~LsG~P~v~l~Ln~~~~l~d 83 (164)
-|++..+|++..+.+|||+.+.||.+||.||||+|+++++++++|+.+.++|.|.|.|+|+|+|||++.|+|+++..|+|
T Consensus 152 ~n~~~~lPtg~~s~VPWR~~~~Ky~nNE~yvdvlEeidai~~k~gslv~~eI~g~vd~~~qLsgmPdltlsl~np~~L~d 231 (418)
T KOG2740|consen 152 SNVSDTLPTGALSNVPWRTAGVKYTNNEAYVDVLEEIDAIVDKKGSLVFGEIQGIVDVCSQLSGMPDLTLSLNNPRLLGD 231 (418)
T ss_pred ccccccCCCcccccccccccCcccccchhhhhhhheeheEecCCCCEEEEEEEEEEEEEEeecCCCceEEEccCccccCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeecccccccceEEEeCCCCcEEEEEEEecCCCCCCCCCceEecEEEEecCCeEEEEEE
Q psy17618 84 VSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHTRVSGSNGGRPNASCPSFHRMVTSASCLTIR 147 (164)
Q Consensus 84 ~~fH~CV~~~~~~~~r~i~F~PPdG~F~Lm~Yr~~~~~~~~~lP~~v~~~~~~~~~~~v~l~v~ 147 (164)
++||+||+..+|++++.|+|+||||+|+||+|+++.. +...+|..+.+++.-.+....++++.
T Consensus 232 vsfHpcVr~krwe~~~~lsFIPPDGkFrLlsy~v~~~-~~v~~pvyv~~~i~l~~~~~~ri~~t 294 (418)
T KOG2740|consen 232 VSFHPCVRYKRWESHSVLSFIPPDGKFRLLSYRVDAQ-NQVAIPVYVKNSISLDSNHQGRISLT 294 (418)
T ss_pred cccccceeecccccccceEEcCCCCcEEEEEEEEehh-hccccceEEeeeeccCCCceEEEEEe
Confidence 9999999999999999999999999999999999987 45689999999999776432444433
No 3
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents the C-terminal domain of the mu subunit from various clathrin adaptors (AP1, AP2 and AP3) []. The C-teminal domain has an immunoglobulin-like beta-sandwich fold consisting of 9 strands in 2 sheets with a Greek key topology, similar to that found in cytochrome f and certain transcription factors []. The mu subunit regulates the coupling of clathrin lattices with particular membrane proteins by self-phosphorylation via a mechanism that is still unclear []. The mu subunit possesses a highly conserved N-terminal domain of around 230 amino acids, which may be the region of interaction with other AP proteins; a linker region of between 10 and 42 amino acids; and a less well-conserved C-terminal domain of around 190 amino acids, which may be the site of specific interaction with the protein being transported in the vesicle []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1H6E_A 3L81_A 1W63_V 4EMZ_A 4EN2_A 2VGL_M 3ML6_F 2PR9_A 2JKT_M 1I31_A ....
Probab=100.00 E-value=6.7e-38 Score=258.58 Aligned_cols=134 Identities=38% Similarity=0.760 Sum_probs=115.7
Q ss_pred CccccCCcccccceEEEEEEeeEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeeEEEecCC-------ccccccccccee
Q psy17618 18 VPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNP-------RLFDDVSFHPCV 90 (164)
Q Consensus 18 ~~WR~~~~~y~knEI~vdV~E~v~~~~~~~G~i~~~~I~G~I~~~s~LsG~P~v~l~Ln~~-------~~l~d~~fH~CV 90 (164)
||||+.+++|++|||||||.|+|+++++++|.++.++|.|+|.|+|+|+|+|+|+|+|+++ ..|+|++||+||
T Consensus 1 ~~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~~~~~~v~G~v~~~~~l~g~p~i~l~l~~~~~~~~~~~~l~~~~fH~cV 80 (262)
T PF00928_consen 1 VPWRPSGIKYKKNEIFVDVVEKISAVLDRDGNILSSEVKGSVQCKSFLSGMPEIKLTLNNPLVVSKNGIKLDDVSFHPCV 80 (262)
T ss_dssp -TTS-STB--SSEEEEEEEEEEEEEEEETTSEEEEEEEEEEEEEEEE-SST-EEEEEESSSCCCTSSSBEESEEEEETTE
T ss_pred CCcccCCcccccceEEEEEEEEEEEEEccCCcEEEEEEEEEEEEEEeCCCCCeEEEEecCccccccCceeeeceeecccc
Confidence 6999999999999999999999999999999999999999999999999999999999998 789999999999
Q ss_pred ecccccccceEEEeCCCCcEEEEEEEecCCCCCCCCCceEecEEEEecCCeEEEEEEEEeeccc
Q psy17618 91 RFKRWEAERILSFIPPDGNFRLMSYHTRVSGSNGGRPNASCPSFHRMVTSASCLTIRIRKVKKD 154 (164)
Q Consensus 91 ~~~~~~~~r~i~F~PPdG~F~Lm~Yr~~~~~~~~~lP~~v~~~~~~~~~~~v~l~v~Lk~~~~~ 154 (164)
+++.|++++.|+|+||||+|+||+||++.. ..+||.++|.+...+.+++++.+++++....
T Consensus 81 ~~~~~~~~~~i~f~PPdg~f~Ll~Yr~~~~---~~~P~~i~~~~~~~~~~~~~v~i~~~~~~~~ 141 (262)
T PF00928_consen 81 DLSKFESDRVISFIPPDGEFTLLRYRVSSN---SPLPFKITCWVSEKSSGRFEVTIELESNFPN 141 (262)
T ss_dssp ECCCCCSHTEEEE---SEEEEEEEEEEESS---S--SEEEEEEEEEETTTEEEEEEEEEE-S-T
T ss_pred CccccccccceecCCCCceEEEEEEEccCC---CCCCcEEEEEeccCCCceEEEEEEecccCCC
Confidence 999999999999999999999999999865 5789999999999777899999999977544
No 4
>KOG0937|consensus
Probab=100.00 E-value=4.5e-36 Score=263.68 Aligned_cols=139 Identities=35% Similarity=0.636 Sum_probs=124.3
Q ss_pred CCCCCCCCCCccccCCcccccceEEEEEEeeEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeeEEEecCC----------
Q psy17618 9 ILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNP---------- 78 (164)
Q Consensus 9 ~~~~~~~~~~~WR~~~~~y~knEI~vdV~E~v~~~~~~~G~i~~~~I~G~I~~~s~LsG~P~v~l~Ln~~---------- 78 (164)
+.|.+.++.+.||+.+++|+|||+|+||+|+|+++++++|.++.++|.|+|+|+|+|+|||+++|+||+.
T Consensus 146 ~~p~avtnavsWrs~gi~~~KnevflDViE~Vs~l~~~~G~vl~s~i~G~I~~k~~LsGmPelrl~ln~~~~~~~~~~~~ 225 (424)
T KOG0937|consen 146 RPPLAVTNAVSWRSEGIYYGKNEVFLDVIESVSLLYDSNGIVLLSEIVGTIKLKCYLSGMPELRLGLNDKVLFDKQGPRS 225 (424)
T ss_pred CCCcccccceeecccccccccceEEEEhhhhhhHhhhcCCcEEEeeeeeEEEEEEEcCCCceeeeecCcccccccccccc
Confidence 3477889999999999999999999999999999999999999999999999999999999999999964
Q ss_pred ----cccccccccceeecccccccceEEEeCCCCcEEEEEEEecCCCCCCCCCceEecEEEE-ecCCeEEEEEEEEee
Q psy17618 79 ----RLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHTRVSGSNGGRPNASCPSFHR-MVTSASCLTIRIRKV 151 (164)
Q Consensus 79 ----~~l~d~~fH~CV~~~~~~~~r~i~F~PPdG~F~Lm~Yr~~~~~~~~~lP~~v~~~~~~-~~~~~v~l~v~Lk~~ 151 (164)
+.|+|++||+||++++|+.+|.|+|+||||+|+||+||.+.. ..|+...+++.+ ++..++++.+.+++-
T Consensus 226 ~s~~v~ledi~fh~~v~l~~fd~dr~i~FiPPdGeF~Lm~Y~ls~~----vkPli~~~~~~~~~~~~ri~i~~K~~~~ 299 (424)
T KOG0937|consen 226 KSKGVELEDIKFHECVRLSRFDNDRTISFIPPDGEFELMRYRLSTH----VKPLIWFYQLIEEHSRSRIEVMVKLREQ 299 (424)
T ss_pred cCcceEeeecccceeechhhccCCceEEecCCCCceEEEEEEecCC----CCCeEEeeeeeeeccceeEEEEEechhh
Confidence 368999999999999999999999999999999999999854 348888888875 555667777666543
No 5
>KOG2677|consensus
Probab=99.86 E-value=1.5e-22 Score=184.77 Aligned_cols=128 Identities=21% Similarity=0.304 Sum_probs=115.6
Q ss_pred CCccccCCcccccceEEEEEEeeEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeeEEEecCC------------------
Q psy17618 17 SVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNP------------------ 78 (164)
Q Consensus 17 ~~~WR~~~~~y~knEI~vdV~E~v~~~~~~~G~i~~~~I~G~I~~~s~LsG~P~v~l~Ln~~------------------ 78 (164)
.+.-|.....|..+||.|||.++.+++++++|+++...+..+|.|.|||+|.|+|.|+||+.
T Consensus 574 lpv~s~~k~nY~e~EI~v~~~Defsg~V~Keg~~~~~~v~tri~cL~FlsG~~ec~lgLND~~~kg~Eiv~rkDimp~~t 653 (922)
T KOG2677|consen 574 LPVLSMDKSNYLEEEITVDVRDEFSGIVSKEGQILQHHVLTRIHCLSFLSGLAECRLGLNDILVKGNEIVLRKDIMPTTT 653 (922)
T ss_pred CccccccccccccceeEEEEEeccceeecccchhhhhhhhhhhhhhhhccCCceeEeecchhhhcccceeEecccccccc
Confidence 34455666689999999999999999999999999999999999999999999999999963
Q ss_pred ---cccccccccceeecccccccceEEEeCCCC-cEEEEEEEecCCCCCCCCCceEecEEEEecCCeEEEEEE
Q psy17618 79 ---RLFDDVSFHPCVRFKRWEAERILSFIPPDG-NFRLMSYHTRVSGSNGGRPNASCPSFHRMVTSASCLTIR 147 (164)
Q Consensus 79 ---~~l~d~~fH~CV~~~~~~~~r~i~F~PPdG-~F~Lm~Yr~~~~~~~~~lP~~v~~~~~~~~~~~v~l~v~ 147 (164)
+.|++|.||.||+.+.|+++|+|-|.|||| .|+||+||+..+.. .+||.++..+...| ..||+..-
T Consensus 654 ~kwI~~~~~~FH~cVn~~eF~~srVI~F~PlDaCrFElMRFrt~~~~~--~lpftlks~~~V~G-a~VEvq~~ 723 (922)
T KOG2677|consen 654 TKWIKLHECRFHGCVNEDEFHNSRVILFNPLDACRFELMRFRTVFAEK--TLPFTLKSATSVNG-AEVEVQSW 723 (922)
T ss_pred ccceeeeeeeeecccchhhccccceEEecCcccceeeeeeeeeecCCC--cCceeeeeeeeecc-ceeehHHH
Confidence 479999999999999999999999999999 99999999998854 68999999999887 67776543
No 6
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans.This C-terminal domain is structurally similar to mu homology domains, and is the region of the muniscin proteins involved in the interactions with the endocytic adaptor-scaffold proteins Ede1-eps15. This interaction influences muniscin localisation. The muniscins provide a combined adaptor-membrane-tubulation activity that is important for regulating endocytosis.; PDB: 3G9H_A.
Probab=97.35 E-value=0.012 Score=49.52 Aligned_cols=121 Identities=14% Similarity=0.164 Sum_probs=76.1
Q ss_pred EEEEEEeeEEEEEcCCCCEEEEEEEEEEEEEEEeCC-------CCeeEEEecCCcccccccccceeecccccccceEEEe
Q psy17618 32 AYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSG-------MPDLTLSFMNPRLFDDVSFHPCVRFKRWEAERILSFI 104 (164)
Q Consensus 32 I~vdV~E~v~~~~~~~G~i~~~~I~G~I~~~s~LsG-------~P~v~l~Ln~~~~l~d~~fH~CV~~~~~~~~r~i~F~ 104 (164)
+-..|.|.|||.+. +|.+....|.|.|.+. |..| .+.+.+.|++...|+.+.-.+..=...-..+....|.
T Consensus 3 l~asi~E~VnA~Fk-~g~~~~v~v~GEv~ls-~~~~~~~~~~~~~~l~~rl~n~~~le~i~pN~~~v~~~~~~~~~f~~n 80 (257)
T PF10291_consen 3 LNASITETVNAYFK-GGQLSKVKVTGEVALS-YPAGISSSLTSPPPLSFRLNNFSRLEKIAPNPQFVSSSSQSDGEFWLN 80 (257)
T ss_dssp EEEEEEEEEEEEEE-TTEEEEEEEEEEEEEE-EE--SSS-----SEEEEEEETGGGEEEEEE-TTTE--EEEETTEEEE-
T ss_pred eeEEEEEEEEEEEE-CCcEEEEEEEEEEEEe-cCCChhhcccCCCcEEEEEcCcchhceeecCHhHeecCCCCCCcEEEe
Confidence 34679999999885 4778889999999874 4444 3567899998888877655543221111123447777
Q ss_pred CC--CCcE--EEEEEEecCCCCC-CCCCceEecEEEEecCCeEEEEEEEEeecccc
Q psy17618 105 PP--DGNF--RLMSYHTRVSGSN-GGRPNASCPSFHRMVTSASCLTIRIRKVKKDK 155 (164)
Q Consensus 105 PP--dG~F--~Lm~Yr~~~~~~~-~~lP~~v~~~~~~~~~~~v~l~v~Lk~~~~~~ 155 (164)
++ .... ..++|++...+.+ ...|+.+.+.++-.+ .+..+.|+.+.+-..+
T Consensus 81 ~~~l~~~~~~~alKYqv~~~~~~~~~~Pl~l~~~Wk~e~-~~tsl~l~Y~~Np~~~ 135 (257)
T PF10291_consen 81 MSALTSHLPKQALKYQVHSDPSNLSSVPLILKPVWKCEP-SQTSLILDYKLNPDAF 135 (257)
T ss_dssp TTTTBT-E-EEEEEEEEES--------SEEEEEEEEE-S-SEEEEEEEEEE-TTT-
T ss_pred hHHhhhhhhhceEEEEEeccccccCCCCeEEEeEEEeCC-ceEEEEEEEEeChhhc
Confidence 66 3344 6899999986432 468999999999774 6788888888766433
No 7
>KOG2635|consensus
Probab=97.27 E-value=0.0051 Score=55.68 Aligned_cols=117 Identities=15% Similarity=0.165 Sum_probs=89.6
Q ss_pred cceEEEEEEeeEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeeEEEecCCc-ccccccccceeecccccccceEEEeCCC
Q psy17618 29 NNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNPR-LFDDVSFHPCVRFKRWEAERILSFIPPD 107 (164)
Q Consensus 29 knEI~vdV~E~v~~~~~~~G~i~~~~I~G~I~~~s~LsG~P~v~l~Ln~~~-~l~d~~fH~CV~~~~~~~~r~i~F~PPd 107 (164)
++-+++.+-|+|++.++++|.+-..++.|.+.++--=.---.+.|.|++.. .=-+.++||=+|.+.|.++..|...+|+
T Consensus 274 ~e~v~i~ieEkln~~~~RDGgi~s~E~qG~lsLrI~d~e~~~i~lkl~n~~~~g~q~ktHPNlDK~~f~s~s~iglk~~~ 353 (512)
T KOG2635|consen 274 EESVHIVIEEKLNVRLSRDGGIKSGEVQGTLSLRIKDEEYGDIELKLANGRDKGTQLKTHPNLDKKVFLSSSLIGLKRPE 353 (512)
T ss_pred cceEEEEEeeeEeEEEcccCCccceeeeeeEEEEEccccccceEEEEcCCCCcceeeeeCCCcchhhhccccccccccCC
Confidence 455999999999999999999999999999887755444566777777642 2336899999999999988889988887
Q ss_pred CcE------EEEEEEecCCCCCCCCCceEecEEEEecCC---eEEEEE
Q psy17618 108 GNF------RLMSYHTRVSGSNGGRPNASCPSFHRMVTS---ASCLTI 146 (164)
Q Consensus 108 G~F------~Lm~Yr~~~~~~~~~lP~~v~~~~~~~~~~---~v~l~v 146 (164)
-.| -|++||.... +....|+.+.|-=.+.|.+ -+||++
T Consensus 354 K~FPvn~~VGvLkWR~~~~-des~iPlTincWPSes~~g~dV~iEYe~ 400 (512)
T KOG2635|consen 354 KPFPVNSDVGVLKWRMVDE-DESEIPLTINCWPSESGNGYDVNIEYEA 400 (512)
T ss_pred CCCCcCCcceEEEEeeccc-ccccCceEEEeccccCCCCeEEEEEEee
Confidence 766 5899997764 3446899998554443322 255555
No 8
>PF07151 DUF1391: Protein of unknown function (DUF1391); InterPro: IPR009821 This family consists of several Enterobacterial proteins of around 50 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi where they are often known as YdfA. The function of this family is unknown.
Probab=42.83 E-value=27 Score=22.07 Aligned_cols=16 Identities=38% Similarity=0.706 Sum_probs=12.6
Q ss_pred EeCCCCcEEEEEEEec
Q psy17618 103 FIPPDGNFRLMSYHTR 118 (164)
Q Consensus 103 F~PPdG~F~Lm~Yr~~ 118 (164)
|--.||.|+.|.|.-+
T Consensus 16 fpn~dgtftamtytks 31 (49)
T PF07151_consen 16 FPNQDGTFTAMTYTKS 31 (49)
T ss_pred eeCCCCcEEEEEEeec
Confidence 4445999999999755
No 9
>KOG0283|consensus
Probab=31.60 E-value=2.4e+02 Score=27.64 Aligned_cols=84 Identities=14% Similarity=0.069 Sum_probs=51.1
Q ss_pred eeEEE-EEcCCCCEEEEEEEEEEEEEEEeCCCCeeEEEecCCcccccccccceeecccccccceEEEeCCCCcEEEEEEE
Q psy17618 38 EEVDA-IIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNPRLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYH 116 (164)
Q Consensus 38 E~v~~-~~~~~G~i~~~~I~G~I~~~s~LsG~P~v~l~Ln~~~~l~d~~fH~CV~~~~~~~~r~i~F~PPdG~F~Lm~Yr 116 (164)
+.|.| .++.. -.+.-|.|+|.+|+.|=+.|+.++..=++.. . -=-.++|.|. |++.+.-
T Consensus 410 dfVTcVaFnPv--DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-------------~--lITAvcy~Pd-Gk~avIG-- 469 (712)
T KOG0283|consen 410 DFVTCVAFNPV--DDRYFISGSLDGKVRLWSISDKKVVDWNDLR-------------D--LITAVCYSPD-GKGAVIG-- 469 (712)
T ss_pred CeeEEEEeccc--CCCcEeecccccceEEeecCcCeeEeehhhh-------------h--hheeEEeccC-CceEEEE--
Confidence 44555 44432 2677889999999999999998886622211 0 1135889877 9887643
Q ss_pred ecCCCCCCCCCceEecEEEEecCCeEEEEEEEEee
Q psy17618 117 TRVSGSNGGRPNASCPSFHRMVTSASCLTIRIRKV 151 (164)
Q Consensus 117 ~~~~~~~~~lP~~v~~~~~~~~~~~v~l~v~Lk~~ 151 (164)
-|.+.|.|-...+.++....+|...
T Consensus 470 ----------t~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 470 ----------TFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred ----------EeccEEEEEEccCCeEEEeeeEeec
Confidence 2445566665544555555554433
No 10
>PF08142 AARP2CN: AARP2CN (NUC121) domain; InterPro: IPR012948 This domain is the central domain of AARP2 (asparagine and aspartate rich protein 2). It is weakly similar to the GTP-binding domain of elongation factor TU []. PfAARP2 is an antigen from Plasmodium falciparum of 150 kDa, which is encoded by a unique gene on chromosome 1 []. The central region of Pfaarp2 contains blocks of repetitions encoding asparagine and aspartate residues. ; GO: 0042254 ribosome biogenesis, 0005634 nucleus
Probab=27.32 E-value=1.3e+02 Score=21.03 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=29.0
Q ss_pred CCCCCCCCccccCCcccccceEEEEEEeeEEEEEcCCCCEEEEEEEEEEEEEEEeCCCC
Q psy17618 11 PSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMP 69 (164)
Q Consensus 11 ~~~~~~~~~WR~~~~~y~knEI~vdV~E~v~~~~~~~G~i~~~~I~G~I~~~s~LsG~P 69 (164)
.....+.+.||..-.. +..|=.|. .-+.+..-... .|++.+.+|+-|.|
T Consensus 10 ~~~k~~~i~WR~~r~y-----~lad~~e~---~~~~~~~~~~~--~~~l~v~GyvRG~~ 58 (85)
T PF08142_consen 10 SVQKPRPISWRDQRPY-----MLADRVEF---VPDPEDESENE--DGTLKVYGYVRGSP 58 (85)
T ss_pred HhCccCCCccccCCCe-----EEEEEEEe---cCCccccccCC--ceEEEEEEEEcccc
Confidence 3445567899876544 44443333 23322111111 89999999999987
No 11
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=26.78 E-value=57 Score=22.15 Aligned_cols=17 Identities=35% Similarity=0.596 Sum_probs=14.5
Q ss_pred ceEEEeCCCC-cEEEEEE
Q psy17618 99 RILSFIPPDG-NFRLMSY 115 (164)
Q Consensus 99 r~i~F~PPdG-~F~Lm~Y 115 (164)
+.+.|.-||| .+++.+|
T Consensus 108 ~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 108 TSVYFRDPDGNLIELSNY 125 (125)
T ss_pred cEEEEECCCCCEEEeeeC
Confidence 5789999999 8888877
No 12
>KOG2116|consensus
Probab=25.55 E-value=59 Score=31.51 Aligned_cols=54 Identities=17% Similarity=0.318 Sum_probs=38.7
Q ss_pred ccCCcccccceEEEEEEeeEEEEE---------cCCCCEEEEEEEEEEEEEEEeCC--CCeeEEEe
Q psy17618 21 RRTGVKYTNNEAYFDVIEEVDAII---------DKTGSTIFSEIQGYIDCCIKLSG--MPDLTLSF 75 (164)
Q Consensus 21 R~~~~~y~knEI~vdV~E~v~~~~---------~~~G~i~~~~I~G~I~~~s~LsG--~P~v~l~L 75 (164)
+.-++++++|++.|.|.-.+.... .-+.+|+-+.|+|+|+ ||..=| +|.+---+
T Consensus 494 ~sLnLk~G~N~v~FsisT~~~Gt~~c~~~IYlWkWn~kIVISDIDGTIT-KSDvLGh~lp~iGkDW 558 (738)
T KOG2116|consen 494 KSLNLKDGKNDVVFSISTQYQGTAQCEGNIYLWKWNDKIVISDIDGTIT-KSDVLGHVLPMIGKDW 558 (738)
T ss_pred hhcCCccCCceeEEEEEecccceEEEeeEEEEEecCCcEEEecCCCceE-hhhhhhhhhhhhcCcc
Confidence 345789999999999995554322 3466789999999997 666666 66655443
No 13
>PF08652 RAI1: RAI1 like PD-(D/E)XK nuclease; InterPro: IPR013961 RAI1 is homologous to Caenorhabditis elegans DOM-3 and human DOM3Z and binds to a nuclear exoribonuclease []. It is required for 5.8S rRNA processing []. ; PDB: 3FQD_B 3FQG_A 3FQI_A 3FQJ_A.
Probab=24.72 E-value=15 Score=24.90 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=13.3
Q ss_pred EEEEeCCCCeeEEEecCCc
Q psy17618 61 CCIKLSGMPDLTLSFMNPR 79 (164)
Q Consensus 61 ~~s~LsG~P~v~l~Ln~~~ 79 (164)
+.|||.|.|.+-+|+.++.
T Consensus 45 ~QsfL~Gi~~IvvG~Rd~~ 63 (69)
T PF08652_consen 45 LQSFLVGIPRIVVGFRDDD 63 (69)
T ss_dssp HHHHCTT--EEEEEEE-TT
T ss_pred HHHhccCCCEEEEEEeCCC
Confidence 4689999999999998653
No 14
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=22.80 E-value=71 Score=22.18 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=12.5
Q ss_pred eEEEeCCCCcEEEEEEEe
Q psy17618 100 ILSFIPPDGNFRLMSYHT 117 (164)
Q Consensus 100 ~i~F~PPdG~F~Lm~Yr~ 117 (164)
..+|+|-+|-|...+|.=
T Consensus 2 l~hf~P~~gvYvYfR~~~ 19 (78)
T PF10438_consen 2 LKHFAPQDGVYVYFRYYD 19 (78)
T ss_dssp EEE---BTTEEEEEEEES
T ss_pred CeeECccCCEEEEEEEcC
Confidence 578999999999999853
No 15
>PF13351 DUF4099: Protein of unknown function (DUF4099)
Probab=22.04 E-value=1.6e+02 Score=20.44 Aligned_cols=32 Identities=34% Similarity=0.395 Sum_probs=24.7
Q ss_pred cccceEEEeC-CCCcEEEEEEEecCCCCCCCCCc
Q psy17618 96 EAERILSFIP-PDGNFRLMSYHTRVSGSNGGRPN 128 (164)
Q Consensus 96 ~~~r~i~F~P-PdG~F~Lm~Yr~~~~~~~~~lP~ 128 (164)
..+.+|+|+. +||+-.|+-|-+...+ +...||
T Consensus 52 ~~~arlsl~~~~dG~v~l~i~~ir~ep-~le~~f 84 (85)
T PF13351_consen 52 ETDARLSLVRDEDGNVDLMIHPIRKEP-ELERPF 84 (85)
T ss_pred ecceEEEEEECCCCCEEEEEeeeeccc-ccCCCC
Confidence 3467899998 9999999999988653 335565
No 16
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=21.64 E-value=3.5e+02 Score=24.96 Aligned_cols=64 Identities=14% Similarity=0.228 Sum_probs=38.5
Q ss_pred EEEEEEEEEeCCC---C--eeEEEecCC-cccccccccceeecccccc--------cceEEEeCCCCcEEEEEEEecC
Q psy17618 56 QGYIDCCIKLSGM---P--DLTLSFMNP-RLFDDVSFHPCVRFKRWEA--------ERILSFIPPDGNFRLMSYHTRV 119 (164)
Q Consensus 56 ~G~I~~~s~LsG~---P--~v~l~Ln~~-~~l~d~~fH~CV~~~~~~~--------~r~i~F~PPdG~F~Lm~Yr~~~ 119 (164)
.|.|.+++.||+. | ..=++|.|. ..+.-+-|+.-...=.|.- ...++|.||.|.|.+.-..+.+
T Consensus 23 ~~~V~v~GEISn~t~~~sgH~YFtLKD~~A~i~c~mf~~~~~~l~f~p~eG~~V~v~G~is~Y~~rG~YQi~~~~~~p 100 (440)
T COG1570 23 LGQVWVRGEISNFTRPASGHLYFTLKDERAQIRCVMFKGNNRRLKFRPEEGMQVLVRGKISLYEPRGDYQIVAESMEP 100 (440)
T ss_pred CCeEEEEEEecCCccCCCccEEEEEccCCceEEEEEEcCcccccCCCccCCCEEEEEEEEEEEcCCCceEEEEecCCc
Confidence 5788888888883 2 345555444 3455555655544322321 2467777888877776665553
No 17
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=21.36 E-value=2.6e+02 Score=18.55 Aligned_cols=72 Identities=10% Similarity=0.014 Sum_probs=32.2
Q ss_pred EEEEeeEEEEEc-CCCCEEEEEEEEEEEEEEEeCCCCeeEEEecCCcccccccccceeec-ccccc-cceEEEeCC
Q psy17618 34 FDVIEEVDAIID-KTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNPRLFDDVSFHPCVRF-KRWEA-ERILSFIPP 106 (164)
Q Consensus 34 vdV~E~v~~~~~-~~G~i~~~~I~G~I~~~s~LsG~P~v~l~Ln~~~~l~d~~fH~CV~~-~~~~~-~r~i~F~PP 106 (164)
+...+..+..+. .+|+.+...+.-.=.-+.+ ++...++|.+-+..-++-.-=-+-+++ ....+ .+.+.|.+|
T Consensus 3 l~a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~-~~~~~~~i~iGna~~v~v~~nG~~~~~~~~~~~v~~~~~~~~~ 77 (77)
T PF13464_consen 3 LTATGDSWVEVTDADGKVLFSGTLKAGETKTF-EGKEPFRIRIGNAGAVEVTVNGKPVDLLGPPGQVVKVARFTLD 77 (77)
T ss_pred EEEeCCeEEEEEeCCCcEeeeeeeCCCcEEEE-eCCCCEEEEEeCCCcEEEEECCEECCCCCCCCccceEEEEcCC
Confidence 445566666443 6776665543221122222 555555555554432211111112222 23333 456777665
Done!