Query psy17618
Match_columns 164
No_of_seqs 107 out of 562
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 18:40:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i31_A Clathrin coat assembly 100.0 7.6E-44 2.6E-48 303.3 19.4 142 7-151 27-189 (314)
2 3ml6_A Chimeric complex betwee 100.0 6.8E-41 2.3E-45 292.6 20.6 141 9-152 96-261 (385)
3 2vgl_M AP-2 complex subunit MU 100.0 1.9E-40 6.5E-45 292.2 19.0 140 9-151 150-310 (435)
4 1w63_M Adaptor-related protein 100.0 5.9E-40 2E-44 288.1 18.6 140 9-151 148-300 (423)
5 4en2_M AP-1 complex subunit MU 100.0 3.4E-40 1.2E-44 275.6 15.6 131 19-152 1-144 (266)
6 3l81_A AP-4 complex subunit MU 100.0 1.6E-39 5.3E-44 276.0 16.7 141 10-153 14-170 (301)
7 3g9h_A Suppressor of yeast pro 96.3 0.34 1.2E-05 41.3 17.0 115 29-157 67-195 (328)
8 3ny5_A Serine/threonine-protei 26.2 17 0.00059 25.5 0.5 33 9-41 58-90 (96)
9 2jxc_B Stonin-2, stoned B; end 23.3 36 0.0012 20.3 1.4 16 12-27 6-21 (45)
10 3zw5_A Glyoxalase domain-conta 21.2 52 0.0018 22.6 2.3 17 99-115 130-147 (147)
No 1
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=100.00 E-value=7.6e-44 Score=303.28 Aligned_cols=142 Identities=32% Similarity=0.593 Sum_probs=120.2
Q ss_pred CCCCCCCCCCCCccccCCcccccceEEEEEEeeEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeeEEEecCC--------
Q psy17618 7 SSILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNP-------- 78 (164)
Q Consensus 7 ~~~~~~~~~~~~~WR~~~~~y~knEI~vdV~E~v~~~~~~~G~i~~~~I~G~I~~~s~LsG~P~v~l~Ln~~-------- 78 (164)
++.+|.+.++++|||+.|++|++|||||||+|+|+++++++|.++.++|.|.|.|+|+|+|||+|+|+||+.
T Consensus 27 ~~~~~~~~~~~v~WR~~gi~y~~NEi~vdV~E~v~~~i~~~G~v~~~eV~G~I~~~~~LsG~P~l~l~Ln~~~~~~~~~~ 106 (314)
T 1i31_A 27 QSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGK 106 (314)
T ss_dssp -----------CTTSCSCCCCSSCEEEEEEEEEEEEEECSSCCEEEEEEEEEEEEEEECSSSCEEEEEESCCC-------
T ss_pred ccCCCccccCCCCCCccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEcCCCCeEEEEECCchhcccccc
Confidence 356777888999999999999999999999999999999999999999999999999999999999999875
Q ss_pred -------------cccccccccceeecccccccceEEEeCCCCcEEEEEEEecCCCCCCCCCceEecEEEEecCCeEEEE
Q psy17618 79 -------------RLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHTRVSGSNGGRPNASCPSFHRMVTSASCLT 145 (164)
Q Consensus 79 -------------~~l~d~~fH~CV~~~~~~~~r~i~F~PPdG~F~Lm~Yr~~~~~~~~~lP~~v~~~~~~~~~~~v~l~ 145 (164)
..|+||+||+||++++|+++|.|+|+||||+|+||+||++. +..+||.+.+.+++.|.++++|+
T Consensus 107 ~~~~~~~~~~~~~~~l~d~~FHpcV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~---~~~lP~~v~~~~~~~g~~~iE~~ 183 (314)
T 1i31_A 107 GTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTK---DIILPFRVIPLVREVGRTKLEVK 183 (314)
T ss_dssp ----------CCCCCCSEEEECTTSBCC----CCCEEECCCSEEEEEEEEEECS---SCCCCEEEEEEEEEETTTEEEEE
T ss_pred ccccccccccCCceEcccccccccccHHHcCCcceEEEECCCCCeEEEEEEecC---CcCCCEEEEEEEEecCCcEEEEE
Confidence 36899999999999999999999999999999999999985 35789999999998877899999
Q ss_pred EEEEee
Q psy17618 146 IRIRKV 151 (164)
Q Consensus 146 v~Lk~~ 151 (164)
+++++.
T Consensus 184 l~~~~~ 189 (314)
T 1i31_A 184 VVIKSN 189 (314)
T ss_dssp EEEEEC
T ss_pred EEEccC
Confidence 999864
No 2
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=100.00 E-value=6.8e-41 Score=292.63 Aligned_cols=141 Identities=28% Similarity=0.477 Sum_probs=125.3
Q ss_pred CCCCCCCCCC-cc---ccCCcccccceEEEEEEeeEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeeEEEecCC------
Q psy17618 9 ILPSGQLSSV-PW---RRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNP------ 78 (164)
Q Consensus 9 ~~~~~~~~~~-~W---R~~~~~y~knEI~vdV~E~v~~~~~~~G~i~~~~I~G~I~~~s~LsG~P~v~l~Ln~~------ 78 (164)
..|...++++ || |+.|++|++|||||||+|+|+++++++|.++.++|.|+|.|+|+|+|||+|+|+||+.
T Consensus 96 ~~~~~~s~~~~~~~~~~~~gi~y~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~k~~LsG~P~~~l~LNd~~~~~~~ 175 (385)
T 3ml6_A 96 GGPRPYSPQPPPYHELEFGGSGGSRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQ 175 (385)
T ss_dssp C------CCCCCCEEBCSSSBCCCCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSCCEEEEEECC-------
T ss_pred cccCccCCCCCCchhccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcCccccccc
Confidence 4455556665 99 8999999999999999999999999999999999999999999999999999999874
Q ss_pred ---------------cccccccccceeecccccccceEEEeCCCCcEEEEEEEecCCCCCCCCCceEecEEEEecCCeEE
Q psy17618 79 ---------------RLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHTRVSGSNGGRPNASCPSFHRMVTSASC 143 (164)
Q Consensus 79 ---------------~~l~d~~fH~CV~~~~~~~~r~i~F~PPdG~F~Lm~Yr~~~~~~~~~lP~~v~~~~~~~~~~~v~ 143 (164)
..|+||+||+||++++|+++|+|+|+||||+|+||+||++.. ..+||.+.|.+++.|.++++
T Consensus 176 ~~~~~~~~~~~~~~~i~l~d~~FH~CV~l~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~---~~~Pf~i~~~v~~~~~~~ve 252 (385)
T 3ml6_A 176 GKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKD---IILPFRVIPLVREVGRTKLE 252 (385)
T ss_dssp ---------------CCCCEEEECTTBCCCCSSSCSEEEECCCSEEEEEEEEEECSS---CCCSEEEEEEEEEETTTEEE
T ss_pred cccccccccccccCceEccccccccccChhHccccceEEEeCCCCceEEEEEEcCCC---CCCCEEEEEEEEeCCCeEEE
Confidence 458999999999999999999999999999999999999853 56899999999998888999
Q ss_pred EEEEEEeec
Q psy17618 144 LTIRIRKVK 152 (164)
Q Consensus 144 l~v~Lk~~~ 152 (164)
+++++|+..
T Consensus 253 i~v~lk~~f 261 (385)
T 3ml6_A 253 VKVVIKSNF 261 (385)
T ss_dssp EEEEEEECS
T ss_pred EEEEEeecC
Confidence 999998754
No 3
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=1.9e-40 Score=292.16 Aligned_cols=140 Identities=31% Similarity=0.592 Sum_probs=118.8
Q ss_pred CCCCCCCCCCccccCCcccccceEEEEEEeeEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeeEEEecCC----------
Q psy17618 9 ILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNP---------- 78 (164)
Q Consensus 9 ~~~~~~~~~~~WR~~~~~y~knEI~vdV~E~v~~~~~~~G~i~~~~I~G~I~~~s~LsG~P~v~l~Ln~~---------- 78 (164)
.+|.+.++++|||+.|++|++|||||||+|+|+++++++|.++.++|.|.|.|+|+|+|||+|+|+||+.
T Consensus 150 ~~~~~~~~~i~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~ 229 (435)
T 2vgl_M 150 QITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGT 229 (435)
T ss_dssp ---------CCSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC-------
T ss_pred ccccccccccccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhcccccccc
Confidence 4566677899999999999999999999999999999999999999999999999999999999999874
Q ss_pred -----------cccccccccceeecccccccceEEEeCCCCcEEEEEEEecCCCCCCCCCceEecEEEEecCCeEEEEEE
Q psy17618 79 -----------RLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHTRVSGSNGGRPNASCPSFHRMVTSASCLTIR 147 (164)
Q Consensus 79 -----------~~l~d~~fH~CV~~~~~~~~r~i~F~PPdG~F~Lm~Yr~~~~~~~~~lP~~v~~~~~~~~~~~v~l~v~ 147 (164)
..|+||+||+||++++|+++|.|+|+||||+|+||+||++.. ..+||.+.|.+++.|.++++|+++
T Consensus 230 ~~~~~~~~~~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~---~~~P~~i~~~~~~~~~~~ve~~l~ 306 (435)
T 2vgl_M 230 ADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKD---IILPFRVIPLVREVGRTKLEVKVV 306 (435)
T ss_dssp ----------CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEEEEEECSS---CCCSEEEEEEEECCTTTEEEEEEE
T ss_pred cccccccccCceEccccccceeecHhHhccCceEEEECCCCcEEEEEEEecCC---cCCCeEEEEEEEecCCCEEEEEEE
Confidence 468999999999999999999999999999999999999853 578999999999887789999999
Q ss_pred EEee
Q psy17618 148 IRKV 151 (164)
Q Consensus 148 Lk~~ 151 (164)
+++.
T Consensus 307 ~~~~ 310 (435)
T 2vgl_M 307 IKSN 310 (435)
T ss_dssp EEEC
T ss_pred EeCC
Confidence 8864
No 4
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=5.9e-40 Score=288.12 Aligned_cols=140 Identities=36% Similarity=0.618 Sum_probs=124.2
Q ss_pred CCCCCCCCCCccccCCcccccceEEEEEEeeEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeeEEEecCCc---------
Q psy17618 9 ILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNPR--------- 79 (164)
Q Consensus 9 ~~~~~~~~~~~WR~~~~~y~knEI~vdV~E~v~~~~~~~G~i~~~~I~G~I~~~s~LsG~P~v~l~Ln~~~--------- 79 (164)
.+|.+.++.+|||+.|++|++|||||||+|+|+++++++|.++.++|.|.|.|+|+|+|||+|+|+||+..
T Consensus 148 ~~~~~~~~~i~wr~~g~~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Ln~~~~~~~~~~~~ 227 (423)
T 1w63_M 148 RPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGK 227 (423)
T ss_dssp ---------CCSSCSSCCCSSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEECSSCCEEEEEECSCC---------
T ss_pred CCcccccCCCCccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEeCCCCeEEEEECCccccccccccc
Confidence 34556678899999999999999999999999999999999999999999999999999999999999875
Q ss_pred ----ccccccccceeecccccccceEEEeCCCCcEEEEEEEecCCCCCCCCCceEecEEEEecCCeEEEEEEEEee
Q psy17618 80 ----LFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHTRVSGSNGGRPNASCPSFHRMVTSASCLTIRIRKV 151 (164)
Q Consensus 80 ----~l~d~~fH~CV~~~~~~~~r~i~F~PPdG~F~Lm~Yr~~~~~~~~~lP~~v~~~~~~~~~~~v~l~v~Lk~~ 151 (164)
.|+||+||+||+++.|+++|.|+|+||||+|+||+||++.. ..+||.+.+.+++.+.++++|++++++.
T Consensus 228 ~~~v~l~d~~fHpcV~~~~f~~~r~isf~PPdg~F~Lm~Yr~~~~---~~~P~~i~~~~~~~~~~~ve~~l~~~~~ 300 (423)
T 1w63_M 228 SKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTH---VKPLIWIESVIEKHSHSRIEYMVKAKSQ 300 (423)
T ss_dssp ----CEEEEEECTTEEESSSSSCCEEEECCCSEEEEEEEEEEECC---CCCTTCCEEEEEEETTTEEEEEEEEECC
T ss_pred cCceEcccccccccccHHHhCCCCeEEEECCCCcEEEEEEEecCC---cCCCEEEEEEEEecCCCEEEEEEEEccc
Confidence 68999999999999999999999999999999999999864 4689999999998777899999998863
No 5
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=100.00 E-value=3.4e-40 Score=275.59 Aligned_cols=131 Identities=37% Similarity=0.638 Sum_probs=122.5
Q ss_pred ccccCCcccccceEEEEEEeeEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeeEEEecCC-------------ccccccc
Q psy17618 19 PWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNP-------------RLFDDVS 85 (164)
Q Consensus 19 ~WR~~~~~y~knEI~vdV~E~v~~~~~~~G~i~~~~I~G~I~~~s~LsG~P~v~l~Ln~~-------------~~l~d~~ 85 (164)
+||+.|++|++|||||||+|+|+++++++|.++.++|.|+|.|+|+|+|||+|+|+||+. ..|+|++
T Consensus 1 ~WR~~~i~y~~nei~vdV~E~v~~~~~~~G~v~~~~v~G~i~~~~~lsG~p~~~l~ln~~~~~~~~~~~~~~~~~l~d~~ 80 (266)
T 4en2_M 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVK 80 (266)
T ss_dssp CCCCTTCCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECCSCCEEEEEECBHHHHHHTTCTTSCCBCCEEEE
T ss_pred CCcCCCCccccCeEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCEEEEEEcCccccccccccccCccCccccc
Confidence 799999999999999999999999999999999999999999999999999999999864 3589999
Q ss_pred ccceeecccccccceEEEeCCCCcEEEEEEEecCCCCCCCCCceEecEEEEecCCeEEEEEEEEeec
Q psy17618 86 FHPCVRFKRWEAERILSFIPPDGNFRLMSYHTRVSGSNGGRPNASCPSFHRMVTSASCLTIRIRKVK 152 (164)
Q Consensus 86 fH~CV~~~~~~~~r~i~F~PPdG~F~Lm~Yr~~~~~~~~~lP~~v~~~~~~~~~~~v~l~v~Lk~~~ 152 (164)
||+||+++.|++++.|+|+||||+|+||+||++.. ..+||.+.+.+++.+.+++++++.+++..
T Consensus 81 fH~cV~~~~f~~~r~i~f~PPdg~F~Lm~yr~~~~---~~~Pi~i~~~~~~~~~~~vei~v~~k~~~ 144 (266)
T 4en2_M 81 FHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTH---VKPLIWIESVIEKHSHSRIEYMVKAKSQF 144 (266)
T ss_dssp ECTTBCHHHHHHHCCCEECCCSEEEEEEEEEECCC---CCCSEEEEEEEEEEETTEEEEEEEEEECB
T ss_pred cccccCHhHccccceEEEeCCCCceEEEEEEecCC---CCCCEEEEEEEecCCCEEEEEEEEEecCC
Confidence 99999999999999999999999999999999854 46899999999988778999999988654
No 6
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=275.98 Aligned_cols=141 Identities=24% Similarity=0.352 Sum_probs=112.3
Q ss_pred CCCCCCCCC-ccccCCcccccceEEEEEEeeEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeeEEEecCC----------
Q psy17618 10 LPSGQLSSV-PWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNP---------- 78 (164)
Q Consensus 10 ~~~~~~~~~-~WR~~~~~y~knEI~vdV~E~v~~~~~~~G~i~~~~I~G~I~~~s~LsG~P~v~l~Ln~~---------- 78 (164)
.+.+.++.+ |||+. +|++|||||||+|+|+++++++|.++.++|.|+|.|+|+|+|||+|+|+||+.
T Consensus 14 ~~~a~~~pv~~wr~~--~~~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Lnd~~~~~~~~~~~ 91 (301)
T 3l81_A 14 PSSAASRPVLSSRSD--QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKSELRG 91 (301)
T ss_dssp ---------------------CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCTTCEEEEEECSSCEESCCTTTC
T ss_pred CchhhcCcccccccc--cCCcceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEccccccccccccc
Confidence 344556665 99996 89999999999999999999999999999999999999999999999999853
Q ss_pred ----cccccccccceeecccccccceEEEeCCCCcEEEEEEEecCCCCCCCCCceEecEEEEecC-CeEEEEEEEEeecc
Q psy17618 79 ----RLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHTRVSGSNGGRPNASCPSFHRMVT-SASCLTIRIRKVKK 153 (164)
Q Consensus 79 ----~~l~d~~fH~CV~~~~~~~~r~i~F~PPdG~F~Lm~Yr~~~~~~~~~lP~~v~~~~~~~~~-~~v~l~v~Lk~~~~ 153 (164)
..|+||+||+||++++|+++|.|+|+||||+|+||+||++... ...+||.+.|.+++.+. ++++|+++|++...
T Consensus 92 ~~~~~~l~d~~fH~cV~~~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~-~~~~P~~v~~~v~~~~~~~~ie~~l~l~~~f~ 170 (301)
T 3l81_A 92 YGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDL-PSPLPFRLFPSVQWDRGSGRLQVYLKLRCDLL 170 (301)
T ss_dssp CCSSSEESEEEEETTCBCTTHHHHCEEEECCCSEEEEEEEEEECSCC-SSCCSEEEEEEEEECTTTSEEEEEEEEEECSC
T ss_pred ccCceEccccccccccChhHccccceEEecCCCCeeEEEEEEecCCC-ccCCCEEEEEEEEECCCcEEEEEEEEEecCCC
Confidence 4589999999999999999999999999999999999998652 23689999999998764 79999999876543
No 7
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.34 Score=41.32 Aligned_cols=115 Identities=16% Similarity=0.160 Sum_probs=80.9
Q ss_pred cceEEEEEEeeEEEEEcCCCCEEEEEEEEEEEEEEEeCC-------CCeeEEEecCCcccccc----cccceeecccccc
Q psy17618 29 NNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSG-------MPDLTLSFMNPRLFDDV----SFHPCVRFKRWEA 97 (164)
Q Consensus 29 knEI~vdV~E~v~~~~~~~G~i~~~~I~G~I~~~s~LsG-------~P~v~l~Ln~~~~l~d~----~fH~CV~~~~~~~ 97 (164)
...+-..+.|.|++.+.. |.+.++.|.|.|.+ +|..| .+.+.+.|++...|+.+ .|-.++..
T Consensus 67 ~pGLnASI~E~VNA~Fkg-g~~tk~~v~GEiaL-sy~~~~~s~~p~p~~l~fRL~N~~~Lekv~pN~~fv~~~~~----- 139 (328)
T 3g9h_A 67 QFGLNASIAEVLNASFKD-GMLQNSQLIGEIAL-NYLPNSVMNSPLPIGINLRINNGAKFEKVILNQAFIERVAP----- 139 (328)
T ss_dssp CCEEEEEEEEEEEEEEET-TEEEEEEEEEEEEE-EEECCSSSCCCCCSEEEEEEETGGGEEEEEECTTTEEEEET-----
T ss_pred CCceeEEEEEEEEEEEEC-CcEEEEEEEEEEEE-ecCCCccccCCCCccEEEEecCcchhheeeCCHHHhccCCC-----
Confidence 457888999999999865 67899999999765 56665 24588999887666543 33333332
Q ss_pred cceEEEeCC--CC-cEEEEEEEecCCCCCCCCCceEecEEEEecCCeEEEEEEEEeecccccc
Q psy17618 98 ERILSFIPP--DG-NFRLMSYHTRVSGSNGGRPNASCPSFHRMVTSASCLTIRIRKVKKDKNR 157 (164)
Q Consensus 98 ~r~i~F~PP--dG-~F~Lm~Yr~~~~~~~~~lP~~v~~~~~~~~~~~v~l~v~Lk~~~~~~~~ 157 (164)
....|-++ .. .-.+++|+++. ...|+.+.+.++-.+ .+..+.|+.|.+-. ++.
T Consensus 140 -~eF~vn~~~L~sktv~~lKYqVs~----~~~PL~l~p~WK~E~-~qtsliI~Yk~NP~-~~~ 195 (328)
T 3g9h_A 140 -EEFKVNPSFIDSRTLGAIKYSIKE----PIAPIVIHPVWRFES-HQASVVLTVKMSPS-LPD 195 (328)
T ss_dssp -TEEEECTTTTBTCEEEEEEEEEES----CCCSEEEEEEEEECS-SEEEEEEEEEECTT-SCT
T ss_pred -CCEEEchHHhcccceeeEEEEECC----CCCCeEEEeeeecCC-CeeEEEEEEEECCC-CcC
Confidence 22333333 12 46789999974 367999999999774 67888888887643 444
No 8
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=26.20 E-value=17 Score=25.52 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=24.4
Q ss_pred CCCCCCCCCCccccCCcccccceEEEEEEeeEE
Q psy17618 9 ILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVD 41 (164)
Q Consensus 9 ~~~~~~~~~~~WR~~~~~y~knEI~vdV~E~v~ 41 (164)
+++.+....++|...-..-..+|+.|++.|.+-
T Consensus 58 ~~~~~~~~~I~WdtDi~~L~geEL~Ve~ld~~p 90 (96)
T 3ny5_A 58 RIQDGEKKPIGWDTDISWLTGEELHVEVLENVP 90 (96)
T ss_dssp ECC---CEEECTTBBGGGGTTCEEEEEECCCCC
T ss_pred EccCCCcCcccccccchhcccceEEehhhhcCC
Confidence 344455677999999877788999999988763
No 9
>2jxc_B Stonin-2, stoned B; endocytosis, calcium, chromosomal rearrangement, cytoplasm, membrane, phosphorylation, polymorphism, proto-oncogene; NMR {Homo sapiens}
Probab=23.26 E-value=36 Score=20.34 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=11.8
Q ss_pred CCCCCCCccccCCccc
Q psy17618 12 SGQLSSVPWRRTGVKY 27 (164)
Q Consensus 12 ~~~~~~~~WR~~~~~y 27 (164)
++....+|||..+..-
T Consensus 6 p~~~e~~Pw~atNPFL 21 (45)
T 2jxc_B 6 PSVTEASPWRATNPFL 21 (45)
T ss_dssp CCCSCCCCSCSSCSSS
T ss_pred CccccCCCcccCCcch
Confidence 3456789999988763
No 10
>3zw5_A Glyoxalase domain-containing protein 5; lyase; 1.60A {Homo sapiens}
Probab=21.20 E-value=52 Score=22.59 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=14.5
Q ss_pred ceEEEeCCCC-cEEEEEE
Q psy17618 99 RILSFIPPDG-NFRLMSY 115 (164)
Q Consensus 99 r~i~F~PPdG-~F~Lm~Y 115 (164)
+.+.|.-||| .++|++|
T Consensus 130 ~~~~~~DPdGn~iEl~~y 147 (147)
T 3zw5_A 130 MSIYFRDPDRNLIEVSNY 147 (147)
T ss_dssp EEEEEECTTCCEEEEEEC
T ss_pred EEEEEECCCCCEEEEecC
Confidence 4688999999 8899887
Done!