RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17618
         (164 letters)



>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit
           (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 277

 Score =  135 bits (342), Expect = 1e-40
 Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 21/121 (17%)

Query: 18  VPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMN 77
           + WRR G+KY  NE + DV+E V+ ++   G  + + + G +     LSGMP+      +
Sbjct: 1   IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 60

Query: 78  PRLF---------------------DDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYH 116
             +                      DD +FH CVR  ++++ER +SFIPPDG F LM Y 
Sbjct: 61  KIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR 120

Query: 117 T 117
           T
Sbjct: 121 T 121


>d1jxca_ g.3.7.5 (A:) Trypsin/chymotrypsin inhibitor ATT
          {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 68

 Score = 25.2 bits (55), Expect = 1.6
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 53 SEIQGYIDCCIKLSGMPDLTLSFMNPRLFDDVSFHPCVRFK 93
           EI+   + C+K  G  D+   F  PR+F  + +  C   K
Sbjct: 2  PEIEAQGNECLKEYGG-DVGFGFCAPRIFPTICYTRCRENK 41


>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 201

 Score = 25.2 bits (54), Expect = 3.8
 Identities = 12/91 (13%), Positives = 26/91 (28%), Gaps = 4/91 (4%)

Query: 11  PSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPD 70
           PSG+++   ++    K+          + V    D          +  I   +  +G  +
Sbjct: 39  PSGRITRQEFQTIYSKFFPEADPKAYAQHVFRSFDANSDGTLDFKEYVIALHMTSAGKTN 98

Query: 71  LTLSFMNPRLFDDVSFHPCVRFKRWEAERIL 101
             L +     F            + E   I+
Sbjct: 99  QKLEWA----FSLYDVDGNGTISKNEVLEIV 125


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 24.6 bits (53), Expect = 4.8
 Identities = 3/19 (15%), Positives = 10/19 (52%)

Query: 143 CLTIRIRKVKKDKNRSISV 161
            L++ + K +    + I++
Sbjct: 96  VLSVILPKAESSIKKGINI 114


>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 96

 Score = 23.7 bits (51), Expect = 7.9
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 7/40 (17%)

Query: 86  FHPCVRFKRWEAERILSFIPPDGNFRLMSYHTRVSGSNGG 125
           F   +   R +AE +LS    DG F +     R S S  G
Sbjct: 6   FFGKI--PRAKAEEMLSKQRHDGAFLI-----RESESAPG 38


>g1htr.1 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens),
           progastricsin (pepsinogen C) [TaxId: 9606]}
          Length = 372

 Score = 24.2 bits (51), Expect = 8.8
 Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 38  EEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSF 75
           + + A++  TG+    E   ++  C  +  +P LT   
Sbjct: 271 QYMSALLQATGAQ-EDEYGQFLVNCNSIQNLPSLTFII 307


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0429    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 651,713
Number of extensions: 30420
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 24
Length of query: 164
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 85
Effective length of database: 1,322,926
Effective search space: 112448710
Effective search space used: 112448710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.4 bits)