BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17620
(741 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 330 bits (845), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 213/645 (33%), Positives = 324/645 (50%), Gaps = 142/645 (22%)
Query: 199 KKFNTVLIVDVHAR--EIKDNFIGSNSLSRSLESVIMWETHKNPRV----IEQCLVPNRL 252
+ FN V + D H++ E DN+ L L S I+W T + + ++Q + +L
Sbjct: 427 QHFNQVDVND-HSKYSEWVDNYPTQLVL---LTSQIVWSTQVDQALGGGTLQQSKIQEQL 482
Query: 253 EHLEQLKDGL--EACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSSPTAIQEHIVKF 310
+ +EQ + + LQD KR F + L++ L Q K
Sbjct: 483 QSIEQTTQMILNNLADSVLQDLSAQKRKKF--------EHLITELVHQRDVVRQLQKCK- 533
Query: 311 AAKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYE 370
+ ++F W +RYY+ + + LVI +M N +F YG+E
Sbjct: 534 --NLTGNKDFDWLYHMRYYYDATQENVLHKLVI--------------HMA-NATFYYGFE 576
Query: 371 YMGLNGRLVITPLTDRIYLTITQALSMRLGAAP--------------------------- 403
Y+G+ RLV TPLTDR YLT+TQAL R+G P
Sbjct: 577 YLGIGERLVQTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFC 636
Query: 404 --AGMDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQF 461
G D A +I GL QCGAWGCFDEFNR++ +LS +S Q+ TI+ AL N+ +
Sbjct: 637 CDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVEL 696
Query: 462 -EGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFL 520
G +I ++ +GIF+TMNPGYAGR+ LP+++K LFR + I PD E+I Q+ML+S+GF
Sbjct: 697 LGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQGFK 756
Query: 521 EAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLE--------- 571
A+VLA K+ L+KL +EQLS Q HYDFG+RALKSVLV AG +KR +
Sbjct: 757 TAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIKRKCQPPQLPPITDAES 816
Query: 572 -----------ESVVLMRALRDMNLPKFVSED---------------------------- 592
E VL+ ++ D +PK V++D
Sbjct: 817 KTKADQIYCQYEIGVLLNSINDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKK 876
Query: 593 -------------------VVQMYETMLTRHSTMIVGPTGGGKS----VVINALVKTSTV 629
++Q+++ + H M+VGP+GGGK+ V + A+ + +
Sbjct: 877 IQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNI 936
Query: 630 LGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD 689
+ + ++PKA++ +L+G L+ TR+W DGL + R + + S +R +I+FD
Sbjct: 937 ---KSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFD 993
Query: 690 GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPIQ 734
GDVD W+EN+NS++DDNK+LTL NGER+ L + +++FE+ ++
Sbjct: 994 GDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLK 1038
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 240 PRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSS 299
P ++E + + +E+L D L +K+L +YL +R+AF RF+F+ D++LL I+G+S
Sbjct: 291 PLILEVLAIERIQQTMERLSDLLGKVQKALGEYLERQRSAFARFYFVGDEDLLEIIGNSK 350
Query: 300 P-TAIQEHIVKFAAKIMD 316
IQ+H K A + +
Sbjct: 351 DIIKIQKHFRKMFAGLAN 368
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 329 bits (843), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 213/645 (33%), Positives = 324/645 (50%), Gaps = 142/645 (22%)
Query: 199 KKFNTVLIVDVHAR--EIKDNFIGSNSLSRSLESVIMWETHKNPRV----IEQCLVPNRL 252
+ FN V + D H++ E DN+ L L S I+W T + + ++Q + +L
Sbjct: 427 QHFNQVDVND-HSKYSEWVDNYPTQLVL---LTSQIVWSTQVDQALGGGTLQQSKIQEQL 482
Query: 253 EHLEQLKDGL--EACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSSPTAIQEHIVKF 310
+ +EQ + + LQD KR F + L++ L Q K
Sbjct: 483 QSIEQTTQMILNNLADSVLQDLSAQKRKKF--------EHLITELVHQRDVVRQLQKCK- 533
Query: 311 AAKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYE 370
+ ++F W +RYY+ + + LVI +M N +F YG+E
Sbjct: 534 --NLTGNKDFDWLYHMRYYYDATQENVLHKLVI--------------HMA-NATFYYGFE 576
Query: 371 YMGLNGRLVITPLTDRIYLTITQALSMRLGAAP--------------------------- 403
Y+G+ RLV TPLTDR YLT+TQAL R+G P
Sbjct: 577 YLGIGERLVQTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFC 636
Query: 404 --AGMDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQF 461
G D A +I GL QCGAWGCFDEFNR++ +LS +S Q+ TI+ AL N+ +
Sbjct: 637 CDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVEL 696
Query: 462 -EGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFL 520
G +I ++ +GIF+TMNPGYAGR+ LP+++K LFR + I PD E+I Q+ML+S+GF
Sbjct: 697 LGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQGFK 756
Query: 521 EAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLE--------- 571
A+VLA K+ L+KL +EQLS Q HYDFG+RALKSVLV AG +KR +
Sbjct: 757 TAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIKRKCQPPQLPPITDAES 816
Query: 572 -----------ESVVLMRALRDMNLPKFVSED---------------------------- 592
E VL+ ++ D +PK V++D
Sbjct: 817 KTKADQIYCQYEIGVLLNSINDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKK 876
Query: 593 -------------------VVQMYETMLTRHSTMIVGPTGGGKS----VVINALVKTSTV 629
++Q+++ + H M+VGP+GGGK+ V + A+ + +
Sbjct: 877 IQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNI 936
Query: 630 LGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD 689
+ + ++PKA++ +L+G L+ TR+W DGL + R + + S +R +I+FD
Sbjct: 937 ---KSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFD 993
Query: 690 GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPIQ 734
GDVD W+EN+NS++DDNK+LTL NGER+ L + +++FE+ ++
Sbjct: 994 GDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLK 1038
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 240 PRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSS 299
P ++E + + +E+L D L +K+L +YL +R+AF RF+F+ D++LL I+G+S
Sbjct: 291 PLILEVLAIERIQQTMERLSDLLGKVQKALGEYLERQRSAFARFYFVGDEDLLEIIGNSK 350
Query: 300 P-TAIQEHIVKFAAKIMD 316
IQ+H K A + +
Sbjct: 351 DIIKIQKHFRKMFAGLAN 368
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 205 bits (521), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 141/485 (29%), Positives = 219/485 (45%), Gaps = 94/485 (19%)
Query: 322 WESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMGLNGRLVIT 381
W ++Y K LD +S+ I Q GY +Y +EY+G+ RL+ T
Sbjct: 365 WAKVQKFYQKNDTLDDLNSVFISQS------GY---------LLQYKFEYIGIPERLIYT 409
Query: 382 PLTDRIYLTITQALSMRLGA---APAG--------------------------MDFLAFG 412
PL + T+T +L + G PAG D+
Sbjct: 410 PLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLS 469
Query: 413 KILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKV 472
++L G++Q GAWGCFDEFNR+D VLS +S + I+ L + + + ++
Sbjct: 470 RLLVGITQIGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHT 529
Query: 473 GIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVL 532
+FIT+NPGY GR+ELPE++K FR P I +++L GF ++K LA K+
Sbjct: 530 AVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQIMGFEDSKSLASKIVHF 589
Query: 533 YKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSED 592
+L + S HY FG+R LK VL L + E++VV +L+ + LP D
Sbjct: 590 LELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEFGEGEKTVV--ESLKRVILPSLGDTD 647
Query: 593 ----------------------------------------------VVQMYETMLTRHST 606
+Q Y T+ +
Sbjct: 648 ELVFKDELSKIFDSAGTPLNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQAL 707
Query: 607 MIVGPTGGGKSVVINALVKTSTVL-GYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLL 665
++VG G GK+ ++ + G+ Y ++ K ++ LYG + T +W DGL
Sbjct: 708 ILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLYGSMLKATLEWRDGLF 767
Query: 666 SNIFRAVNKPLDPGSK-ERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHC 724
++I R VN + K R +++FD D+D ++E MNSV+DDNKILTL NGER+ + +
Sbjct: 768 TSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNF 827
Query: 725 QLLFE 729
++LFE
Sbjct: 828 RILFE 832
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 242 VIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSSPT 301
IE +PN L+ D L+ + SL +L +R FPRF+F+ +D+LL I+GS
Sbjct: 133 TIEVIHIPNFDTTLKLTIDSLKMIKSSLSTFLERQRRQFPRFYFLGNDDLLKIIGSGKH- 191
Query: 302 AIQEHIVKFAAKIMDAEE 319
+ + KF K+ + E
Sbjct: 192 --HDQVSKFMKKMFGSIE 207
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 141/485 (29%), Positives = 219/485 (45%), Gaps = 94/485 (19%)
Query: 322 WESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMGLNGRLVIT 381
W ++Y K LD +S+ I Q GY +Y +EY+G+ RL+ T
Sbjct: 584 WAKVQKFYQKNDTLDDLNSVFISQS------GY---------LLQYKFEYIGIPERLIYT 628
Query: 382 PLTDRIYLTITQALSMRLGA---APAG--------------------------MDFLAFG 412
PL + T+T +L + G PAG D+
Sbjct: 629 PLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLS 688
Query: 413 KILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKV 472
++L G++Q GAWGCFDEFNR+D VLS +S + I+ L + + + ++
Sbjct: 689 RLLVGITQIGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHT 748
Query: 473 GIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVL 532
+FIT+NPGY GR+ELPE++K FR P I +++L GF ++K LA K+
Sbjct: 749 AVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQIMGFEDSKSLASKIVHF 808
Query: 533 YKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSED 592
+L + S HY FG+R LK VL L + E++VV +L+ + LP D
Sbjct: 809 LELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEFGEGEKTVV--ESLKRVILPSLGDTD 866
Query: 593 ----------------------------------------------VVQMYETMLTRHST 606
+Q Y T+ +
Sbjct: 867 ELVFKDELSKIFDSAGTPLNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQAL 926
Query: 607 MIVGPTGGGKSVVINALVKTSTVL-GYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLL 665
++VG G GK+ ++ + G+ Y ++ K ++ LYG + T +W DGL
Sbjct: 927 ILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLYGSMLKATLEWRDGLF 986
Query: 666 SNIFRAVNKPLDPGSK-ERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHC 724
++I R VN + K R +++FD D+D ++E MNSV+DDNKILTL NGER+ + +
Sbjct: 987 TSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNF 1046
Query: 725 QLLFE 729
++LFE
Sbjct: 1047 RILFE 1051
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 242 VIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSSPT 301
IE +PN L+ D L+ + SL +L +R FPRF+F+ +D+LL I+GS
Sbjct: 352 TIEVIHIPNFDTTLKLTIDSLKMIKSSLSTFLERQRRQFPRFYFLGNDDLLKIIGSGKH- 410
Query: 302 AIQEHIVKFAAKIMDAEE 319
+ + KF K+ + E
Sbjct: 411 --HDQVSKFMKKMFGSIE 426
>pdb|3AFH|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With A Glutamyl-Amp
Analog
Length = 488
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 221 SNSLSRSLESVIMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAF 280
S L + E ++ +P I+ ++P + + LK +E +L+D++ K N F
Sbjct: 137 SKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNGF 196
Query: 281 PRFFF--ISDDELLSILGSSSPTAIQEHIVKFAAKIMDAEEFQWES 324
P + F + DD L+ I S ++H+ ++M E F WE+
Sbjct: 197 PTYNFAVVVDDHLMRI---SHVFRGEDHLSNTPKQLMIYEAFGWEA 239
>pdb|3AKZ|B Chain B, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|D Chain D, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|C Chain C, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
Length = 487
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 221 SNSLSRSLESVIMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAF 280
S L + E ++ +P I+ ++P + + LK +E +L+D++ K N F
Sbjct: 136 SKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNGF 195
Query: 281 PRFFF--ISDDELLSILGSSSPTAIQEHIVKFAAKIMDAEEFQWES 324
P + F + DD L+ I S ++H+ ++M E F WE+
Sbjct: 196 PTYNFAVVVDDHLMRI---SHVFRGEDHLSNTPKQLMIYEAFGWEA 238
>pdb|3AL0|C Chain C, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 592
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 221 SNSLSRSLESVIMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAF 280
S L + E ++ +P I+ ++P + + LK +E +L+D++ K N F
Sbjct: 241 SKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNGF 300
Query: 281 PRFFF--ISDDELLSILGSSSPTAIQEHIVKFAAKIMDAEEFQWES 324
P + F + DD L+ I S ++H+ ++M E F WE+
Sbjct: 301 PTYNFAVVVDDHLMRI---SHVFRGEDHLSNTPKQLMIYEAFGWEA 343
>pdb|1W1W|A Chain A, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|B Chain B, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|C Chain C, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|D Chain D, Sc Smc1hd:scc1-c Complex, Atpgs
Length = 430
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYD 662
T I+GP G GKS +++A+ S VLG R+ L + + GVLN E D YD
Sbjct: 29 TSIIGPNGSGKSNMMDAI---SFVLG--VRSNHLRSNILKDLIYRGVLNDENSDDYD 80
>pdb|1O9R|A Chain A, The X-Ray Crystal Structure Of Agrobacterium Tumefaciens
Dps, A Member Of The Family That Protect Dna Without
Binding
pdb|1O9R|B Chain B, The X-Ray Crystal Structure Of Agrobacterium Tumefaciens
Dps, A Member Of The Family That Protect Dna Without
Binding
pdb|1O9R|C Chain C, The X-Ray Crystal Structure Of Agrobacterium Tumefaciens
Dps, A Member Of The Family That Protect Dna Without
Binding
pdb|1O9R|D Chain D, The X-Ray Crystal Structure Of Agrobacterium Tumefaciens
Dps, A Member Of The Family That Protect Dna Without
Binding
pdb|1O9R|E Chain E, The X-Ray Crystal Structure Of Agrobacterium Tumefaciens
Dps, A Member Of The Family That Protect Dna Without
Binding
pdb|1O9R|F Chain F, The X-Ray Crystal Structure Of Agrobacterium Tumefaciens
Dps, A Member Of The Family That Protect Dna Without
Binding
Length = 162
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 573 SVVLMRALRDMNLPKFVS-EDVVQMYETMLTRHSTMI---VGPTGGGKSVVINALVKTST 628
++V +A ++ P+F++ +++ + T L H I V GG + A+ T+
Sbjct: 33 ALVTKQAHWNLKGPQFIAVHELLDTFRTQLDNHGDTIAERVVQLGGTALGSLQAVSSTTK 92
Query: 629 VLGYPARTYTLNPKAVSVIELYG-VLN------PETRDWYDGLLSNIFRAVNKPLD 677
+ YP Y ++ ++IE YG V N ++ + D ++IF A ++ LD
Sbjct: 93 LKAYPTDIYKIHDHLDALIERYGEVANMIRKAIDDSDEAGDPTTADIFTAASRDLD 148
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 577 MRALRDMNLPKFVSE----DVVQMYETMLTRHSTMIVGPTGGGKSVVINAL 623
M LR N+ K+ E D V + ++ T+I+GP G GKS +IN +
Sbjct: 5 MEILRTENIVKYFGEFKALDGVSI--SVCKGDVTLIIGPNGSGKSTLINVI 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,569,239
Number of Sequences: 62578
Number of extensions: 896007
Number of successful extensions: 2260
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2208
Number of HSP's gapped (non-prelim): 44
length of query: 741
length of database: 14,973,337
effective HSP length: 106
effective length of query: 635
effective length of database: 8,340,069
effective search space: 5295943815
effective search space used: 5295943815
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)