Query psy17620
Match_columns 741
No_of_seqs 418 out of 1758
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 18:43:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12774 AAA_6: Hydrolytic ATP 100.0 7.3E-66 1.6E-70 531.0 17.7 202 367-568 1-231 (231)
2 COG5245 DYN1 Dynein, heavy cha 100.0 1.7E-30 3.8E-35 302.7 15.6 485 175-740 625-1287(3164)
3 PF08393 DHC_N2: Dynein heavy 99.9 2.1E-24 4.6E-29 241.3 10.0 141 155-317 203-349 (408)
4 COG5271 MDN1 AAA ATPase contai 99.8 1.2E-19 2.7E-24 213.5 21.3 299 408-732 622-1007(4600)
5 COG5271 MDN1 AAA ATPase contai 99.8 3E-17 6.4E-22 194.0 20.1 279 417-727 1289-1659(4600)
6 COG5245 DYN1 Dynein, heavy cha 99.7 8.4E-19 1.8E-23 206.4 7.1 326 364-740 1573-1955(3164)
7 KOG1808|consensus 99.5 2.5E-13 5.4E-18 169.2 12.8 299 408-733 199-560 (1856)
8 PF07728 AAA_5: AAA domain (dy 99.3 5.5E-12 1.2E-16 119.9 5.6 115 605-734 1-125 (139)
9 TIGR01650 PD_CobS cobaltochela 99.0 2.9E-09 6.2E-14 115.1 12.0 125 594-733 55-188 (327)
10 TIGR02640 gas_vesic_GvpN gas v 98.9 6.9E-09 1.5E-13 109.9 12.9 132 418-563 102-239 (262)
11 TIGR02640 gas_vesic_GvpN gas v 98.9 1.4E-08 3E-13 107.6 11.9 122 595-732 13-160 (262)
12 KOG1808|consensus 98.8 2.1E-08 4.5E-13 126.2 12.0 331 367-727 408-845 (1856)
13 PHA02244 ATPase-like protein 98.7 5.7E-08 1.2E-12 106.4 10.8 118 595-732 111-230 (383)
14 TIGR01650 PD_CobS cobaltochela 98.5 7.1E-07 1.5E-11 96.7 13.0 133 418-558 131-278 (327)
15 PRK11331 5-methylcytosine-spec 98.3 5.6E-06 1.2E-10 93.1 11.8 149 576-733 170-335 (459)
16 PRK11034 clpA ATP-dependent Cl 98.2 6E-05 1.3E-09 90.8 20.6 113 604-733 489-607 (758)
17 TIGR02639 ClpA ATP-dependent C 98.0 0.00013 2.9E-09 88.2 18.0 114 605-733 486-603 (731)
18 PHA02244 ATPase-like protein 98.0 0.00014 3.1E-09 80.0 14.8 121 412-553 172-300 (383)
19 PF07726 AAA_3: ATPase family 97.7 6.5E-05 1.4E-09 70.9 6.0 65 423-496 64-129 (131)
20 PF07728 AAA_5: AAA domain (dy 97.6 5.5E-05 1.2E-09 71.8 4.1 69 421-496 65-139 (139)
21 KOG0730|consensus 97.6 0.00052 1.1E-08 79.4 12.3 237 409-695 264-539 (693)
22 PF00158 Sigma54_activat: Sigm 97.5 0.00022 4.7E-09 70.8 7.5 120 595-731 14-142 (168)
23 CHL00095 clpC Clp protease ATP 97.3 0.0087 1.9E-07 73.5 18.4 114 605-733 541-661 (821)
24 TIGR03346 chaperone_ClpB ATP-d 97.2 0.012 2.5E-07 72.7 18.2 115 604-733 596-717 (852)
25 cd00009 AAA The AAA+ (ATPases 97.2 0.0017 3.7E-08 60.1 8.6 33 596-628 10-44 (151)
26 COG0714 MoxR-like ATPases [Gen 97.1 0.0012 2.6E-08 72.4 7.8 117 593-728 33-159 (329)
27 PF12774 AAA_6: Hydrolytic ATP 97.1 0.002 4.3E-08 67.3 8.9 109 594-730 23-141 (231)
28 COG0714 MoxR-like ATPases [Gen 97.0 0.0081 1.8E-07 65.8 13.7 109 423-540 114-228 (329)
29 cd01131 PilT Pilus retraction 97.0 0.0028 6E-08 64.5 9.1 88 605-698 3-90 (198)
30 PF00004 AAA: ATPase family as 97.0 0.0007 1.5E-08 62.7 4.2 69 606-694 1-69 (132)
31 PRK08118 topology modulation p 96.9 0.0015 3.3E-08 64.6 6.1 24 605-628 3-26 (167)
32 PF05496 RuvB_N: Holliday junc 96.9 0.009 1.9E-07 61.8 11.1 140 574-741 12-167 (233)
33 PF01078 Mg_chelatase: Magnesi 96.8 0.00092 2E-08 68.2 3.8 112 601-729 20-155 (206)
34 PF12775 AAA_7: P-loop contain 96.8 0.015 3.2E-07 62.3 12.9 132 425-560 104-251 (272)
35 TIGR01243 CDC48 AAA family ATP 96.8 0.046 1E-06 66.5 18.6 68 602-689 486-553 (733)
36 CHL00195 ycf46 Ycf46; Provisio 96.8 0.14 3.1E-06 59.2 21.6 112 378-513 19-151 (489)
37 PRK13407 bchI magnesium chelat 96.7 0.0021 4.6E-08 70.6 5.5 113 604-729 30-177 (334)
38 TIGR03345 VI_ClpV1 type VI sec 96.6 0.01 2.2E-07 73.0 10.7 114 606-733 599-718 (852)
39 PRK12402 replication factor C 96.5 0.01 2.2E-07 64.6 9.6 37 593-629 24-62 (337)
40 TIGR00382 clpX endopeptidase C 96.5 0.0062 1.3E-07 68.7 7.9 114 603-733 116-247 (413)
41 smart00382 AAA ATPases associa 96.5 0.0027 5.9E-08 58.0 4.0 41 603-645 2-42 (148)
42 TIGR03574 selen_PSTK L-seryl-t 96.5 0.0023 5E-08 67.2 3.7 27 606-632 2-28 (249)
43 PF13207 AAA_17: AAA domain; P 96.4 0.0026 5.6E-08 58.6 3.4 24 605-628 1-24 (121)
44 TIGR02030 BchI-ChlI magnesium 96.4 0.0053 1.2E-07 67.6 6.4 112 603-728 25-179 (337)
45 TIGR00041 DTMP_kinase thymidyl 96.3 0.0032 6.9E-08 63.2 3.8 46 604-650 4-49 (195)
46 PRK07261 topology modulation p 96.3 0.0075 1.6E-07 59.9 6.0 22 606-627 3-24 (171)
47 TIGR00635 ruvB Holliday juncti 96.2 0.014 3.1E-07 62.8 8.3 78 605-710 32-111 (305)
48 PRK05342 clpX ATP-dependent pr 96.2 0.0099 2.1E-07 67.2 7.3 116 602-733 107-239 (412)
49 KOG0736|consensus 96.2 0.021 4.5E-07 67.5 9.7 28 600-627 702-729 (953)
50 TIGR00763 lon ATP-dependent pr 96.1 0.06 1.3E-06 65.9 14.0 119 604-739 348-479 (775)
51 TIGR02031 BchD-ChlD magnesium 96.1 0.0072 1.6E-07 71.5 5.8 110 605-732 18-135 (589)
52 PF13671 AAA_33: AAA domain; P 96.1 0.0044 9.6E-08 58.6 3.2 23 606-628 2-24 (143)
53 PRK15424 propionate catabolism 96.1 0.024 5.1E-07 66.3 9.6 121 598-733 237-374 (538)
54 PF05729 NACHT: NACHT domain 96.0 0.016 3.4E-07 55.6 6.9 28 604-631 1-28 (166)
55 PRK10865 protein disaggregatio 96.0 0.018 3.9E-07 71.0 8.9 114 605-733 600-720 (857)
56 CHL00081 chlI Mg-protoporyphyr 96.0 0.014 3E-07 64.6 7.0 117 604-728 39-192 (350)
57 PRK11388 DNA-binding transcrip 96.0 0.024 5.3E-07 67.7 9.7 120 595-731 340-465 (638)
58 PF03029 ATP_bind_1: Conserved 96.0 0.0066 1.4E-07 63.7 4.3 38 608-645 1-38 (238)
59 PRK06526 transposase; Provisio 95.9 0.0061 1.3E-07 64.5 3.8 88 600-705 95-186 (254)
60 cd03115 SRP The signal recogni 95.9 0.012 2.6E-07 58.0 5.7 39 605-643 2-40 (173)
61 TIGR02329 propionate_PrpR prop 95.9 0.03 6.5E-07 65.3 9.7 117 598-731 230-356 (526)
62 PRK00080 ruvB Holliday junctio 95.9 0.02 4.3E-07 62.7 7.9 107 604-739 52-166 (328)
63 COG0542 clpA ATP-binding subun 95.9 0.02 4.3E-07 68.8 8.2 112 605-734 523-644 (786)
64 TIGR01420 pilT_fam pilus retra 95.9 0.045 9.8E-07 60.5 10.6 34 596-629 114-148 (343)
65 PLN03025 replication factor C 95.9 0.039 8.5E-07 60.2 10.0 24 605-628 36-59 (319)
66 PRK13531 regulatory ATPase Rav 95.9 0.017 3.6E-07 66.2 7.2 124 593-731 29-154 (498)
67 PRK07003 DNA polymerase III su 95.9 0.026 5.7E-07 67.5 9.0 28 602-629 37-64 (830)
68 cd02028 UMPK_like Uridine mono 95.8 0.019 4.2E-07 57.4 6.7 31 606-636 2-32 (179)
69 PRK07940 DNA polymerase III su 95.8 0.023 5.1E-07 63.9 7.8 28 602-629 35-62 (394)
70 PRK06762 hypothetical protein; 95.8 0.013 2.9E-07 57.2 5.1 37 604-645 3-39 (166)
71 PF04665 Pox_A32: Poxvirus A32 95.7 0.033 7.1E-07 58.4 8.1 123 603-741 13-146 (241)
72 PRK08233 hypothetical protein; 95.7 0.013 2.8E-07 57.8 4.9 25 604-628 4-28 (182)
73 PRK08181 transposase; Validate 95.7 0.086 1.9E-06 56.4 11.4 37 600-636 103-139 (269)
74 PF13173 AAA_14: AAA domain 95.7 0.018 3.9E-07 54.1 5.6 86 602-707 1-87 (128)
75 TIGR00368 Mg chelatase-related 95.7 0.029 6.3E-07 65.0 8.0 117 599-732 207-347 (499)
76 cd01120 RecA-like_NTPases RecA 95.6 0.036 7.8E-07 52.7 7.5 29 606-634 2-30 (165)
77 PRK08084 DNA replication initi 95.6 0.011 2.4E-07 61.8 4.2 35 603-637 45-79 (235)
78 PRK12323 DNA polymerase III su 95.6 0.019 4.1E-07 67.8 6.4 126 597-739 32-170 (700)
79 PF13238 AAA_18: AAA domain; P 95.6 0.01 2.3E-07 54.6 3.4 22 606-627 1-22 (129)
80 cd01129 PulE-GspE PulE/GspE Th 95.6 0.055 1.2E-06 57.6 9.2 37 593-629 69-106 (264)
81 COG3911 Predicted ATPase [Gene 95.5 0.011 2.4E-07 57.1 3.3 83 604-694 10-94 (183)
82 COG1618 Predicted nucleotide k 95.5 0.033 7.1E-07 54.7 6.6 101 602-710 4-133 (179)
83 TIGR02974 phageshock_pspF psp 95.5 0.03 6.5E-07 61.5 7.3 120 595-731 14-142 (329)
84 PRK14951 DNA polymerase III su 95.5 0.044 9.6E-07 64.9 9.0 29 601-629 36-64 (618)
85 KOG1533|consensus 95.5 0.012 2.5E-07 60.9 3.5 41 604-644 3-43 (290)
86 PRK00440 rfc replication facto 95.5 0.073 1.6E-06 57.4 10.0 25 604-628 39-63 (319)
87 PRK14958 DNA polymerase III su 95.4 0.065 1.4E-06 62.4 10.0 29 601-629 36-64 (509)
88 PRK13808 adenylate kinase; Pro 95.4 0.023 5E-07 62.3 5.9 23 606-628 3-25 (333)
89 TIGR02902 spore_lonB ATP-depen 95.4 0.12 2.6E-06 60.5 12.2 125 603-740 86-251 (531)
90 PF06414 Zeta_toxin: Zeta toxi 95.4 0.0071 1.5E-07 61.3 1.6 85 602-701 14-112 (199)
91 PRK04195 replication factor C 95.3 0.073 1.6E-06 61.6 10.0 25 603-627 39-63 (482)
92 PHA02544 44 clamp loader, smal 95.3 0.028 6.2E-07 60.8 6.2 25 603-627 43-67 (316)
93 PF01695 IstB_IS21: IstB-like 95.3 0.015 3.3E-07 58.2 3.7 87 601-705 45-135 (178)
94 COG1126 GlnQ ABC-type polar am 95.3 0.012 2.5E-07 60.5 2.8 26 601-626 26-51 (240)
95 TIGR03499 FlhF flagellar biosy 95.3 0.088 1.9E-06 56.6 9.6 39 603-641 194-234 (282)
96 TIGR02903 spore_lon_C ATP-depe 95.3 0.17 3.6E-06 60.4 12.8 101 603-710 175-295 (615)
97 PRK00131 aroK shikimate kinase 95.3 0.014 3.1E-07 56.9 3.2 27 602-628 3-29 (175)
98 PRK06217 hypothetical protein; 95.2 0.024 5.2E-07 56.7 4.9 24 605-628 3-26 (183)
99 PRK09435 membrane ATPase/prote 95.2 0.027 5.9E-07 61.9 5.6 50 602-651 55-105 (332)
100 TIGR02788 VirB11 P-type DNA tr 95.2 0.064 1.4E-06 58.4 8.4 32 597-628 138-169 (308)
101 PRK11608 pspF phage shock prot 95.2 0.075 1.6E-06 58.3 8.9 121 594-731 20-149 (326)
102 PRK05703 flhF flagellar biosyn 95.2 0.044 9.6E-07 62.3 7.4 95 603-705 221-326 (424)
103 PRK14961 DNA polymerase III su 95.2 0.026 5.5E-07 62.9 5.3 27 602-628 37-63 (363)
104 COG0470 HolB ATPase involved i 95.1 0.038 8.2E-07 59.6 6.5 88 601-704 22-130 (325)
105 PRK13833 conjugal transfer pro 95.1 0.032 6.9E-07 61.1 5.8 35 593-627 134-168 (323)
106 COG1136 SalX ABC-type antimicr 95.1 0.013 2.8E-07 60.8 2.6 27 603-629 31-57 (226)
107 PRK10820 DNA-binding transcrip 95.1 0.075 1.6E-06 62.1 9.2 119 596-731 220-347 (520)
108 KOG3062|consensus 95.1 0.031 6.8E-07 57.4 5.2 50 658-711 128-181 (281)
109 KOG1534|consensus 95.1 0.017 3.7E-07 58.7 3.3 44 602-645 2-45 (273)
110 TIGR02782 TrbB_P P-type conjug 95.1 0.034 7.3E-07 60.4 5.9 36 593-628 122-157 (299)
111 TIGR02524 dot_icm_DotB Dot/Icm 95.1 0.069 1.5E-06 59.4 8.5 31 598-628 128-159 (358)
112 cd02019 NK Nucleoside/nucleoti 95.1 0.019 4.2E-07 48.1 3.2 22 606-627 2-23 (69)
113 PRK14722 flhF flagellar biosyn 95.1 0.054 1.2E-06 60.4 7.6 105 601-713 135-254 (374)
114 TIGR00764 lon_rel lon-related 95.1 0.032 6.9E-07 66.3 6.1 62 582-643 9-77 (608)
115 cd01130 VirB11-like_ATPase Typ 95.1 0.021 4.6E-07 57.3 4.0 34 595-628 17-50 (186)
116 PRK00411 cdc6 cell division co 95.1 0.067 1.4E-06 59.8 8.4 41 604-644 56-96 (394)
117 PRK10078 ribose 1,5-bisphospho 95.1 0.014 3E-07 58.5 2.6 24 604-627 3-26 (186)
118 TIGR01360 aden_kin_iso1 adenyl 95.0 0.017 3.7E-07 57.2 3.2 25 604-628 4-28 (188)
119 PRK05022 anaerobic nitric oxid 95.0 0.1 2.2E-06 60.8 10.0 120 595-731 202-330 (509)
120 COG1116 TauB ABC-type nitrate/ 95.0 0.015 3.3E-07 60.8 2.7 26 603-628 29-54 (248)
121 PF13401 AAA_22: AAA domain; P 95.0 0.02 4.3E-07 53.2 3.3 98 602-705 3-113 (131)
122 COG0606 Predicted ATPase with 95.0 0.025 5.4E-07 64.0 4.6 118 596-730 191-333 (490)
123 TIGR02322 phosphon_PhnN phosph 95.0 0.017 3.7E-07 57.2 3.0 24 605-628 3-26 (179)
124 COG3839 MalK ABC-type sugar tr 95.0 0.015 3.3E-07 63.8 2.7 24 605-628 31-54 (338)
125 PRK03839 putative kinase; Prov 94.9 0.019 4.1E-07 57.0 3.1 24 605-628 2-25 (180)
126 TIGR01359 UMP_CMP_kin_fam UMP- 94.9 0.019 4E-07 57.0 3.1 23 606-628 2-24 (183)
127 PRK14530 adenylate kinase; Pro 94.9 0.02 4.4E-07 58.7 3.4 25 604-628 4-28 (215)
128 PF00448 SRP54: SRP54-type pro 94.9 0.036 7.9E-07 56.4 5.1 39 604-642 2-40 (196)
129 cd00464 SK Shikimate kinase (S 94.9 0.021 4.5E-07 54.7 3.2 24 605-628 1-24 (154)
130 TIGR01243 CDC48 AAA family ATP 94.9 0.057 1.2E-06 65.7 7.6 26 603-628 212-237 (733)
131 smart00350 MCM minichromosome 94.9 0.27 5.8E-06 57.4 12.8 86 421-514 300-400 (509)
132 COG2256 MGS1 ATPase related to 94.9 0.03 6.6E-07 62.0 4.7 43 596-643 39-83 (436)
133 TIGR02442 Cob-chelat-sub cobal 94.8 0.029 6.3E-07 67.0 4.9 111 604-728 26-174 (633)
134 PF03193 DUF258: Protein of un 94.8 0.033 7.1E-07 54.9 4.4 36 591-627 24-59 (161)
135 PF13555 AAA_29: P-loop contai 94.8 0.029 6.4E-07 46.4 3.4 23 605-627 25-47 (62)
136 TIGR02881 spore_V_K stage V sp 94.8 0.023 4.9E-07 60.2 3.4 28 604-631 43-70 (261)
137 PRK13894 conjugal transfer ATP 94.8 0.045 9.7E-07 59.9 5.8 34 594-627 139-172 (319)
138 TIGR01313 therm_gnt_kin carboh 94.8 0.019 4E-07 56.0 2.5 23 606-628 1-23 (163)
139 PRK09862 putative ATP-dependen 94.8 0.041 8.9E-07 63.7 5.7 115 600-731 207-345 (506)
140 TIGR02928 orc1/cdc6 family rep 94.7 0.095 2.1E-06 57.8 8.3 40 604-643 41-84 (365)
141 COG2204 AtoC Response regulato 94.7 0.055 1.2E-06 61.7 6.5 119 598-731 159-284 (464)
142 PLN02842 nucleotide kinase 94.7 0.048 1E-06 62.8 6.1 22 607-628 1-22 (505)
143 PRK10536 hypothetical protein; 94.7 0.059 1.3E-06 57.1 6.2 125 596-722 67-219 (262)
144 smart00763 AAA_PrkA PrkA AAA d 94.7 0.023 5.1E-07 62.7 3.4 28 602-629 77-104 (361)
145 PF08477 Miro: Miro-like prote 94.7 0.024 5.3E-07 51.6 3.0 22 606-627 2-23 (119)
146 PF07726 AAA_3: ATPase family 94.7 0.018 3.9E-07 54.6 2.1 104 606-731 2-111 (131)
147 PF13245 AAA_19: Part of AAA d 94.7 0.047 1E-06 47.0 4.5 47 599-645 6-54 (76)
148 PF01580 FtsK_SpoIIIE: FtsK/Sp 94.7 0.058 1.3E-06 54.7 6.0 48 603-650 38-87 (205)
149 cd00820 PEPCK_HprK Phosphoenol 94.7 0.025 5.4E-07 52.0 2.9 22 603-624 15-36 (107)
150 COG4778 PhnL ABC-type phosphon 94.6 0.023 4.9E-07 56.3 2.7 27 601-627 35-61 (235)
151 PF12775 AAA_7: P-loop contain 94.6 0.032 7E-07 59.7 4.2 29 599-627 29-57 (272)
152 KOG0741|consensus 94.6 0.044 9.5E-07 62.5 5.3 32 598-629 249-282 (744)
153 cd00071 GMPK Guanosine monopho 94.6 0.024 5.2E-07 54.2 2.8 22 606-627 2-23 (137)
154 PF03308 ArgK: ArgK protein; 94.6 0.039 8.4E-07 58.2 4.5 52 601-652 27-79 (266)
155 PF00485 PRK: Phosphoribulokin 94.6 0.045 9.8E-07 55.2 4.8 28 606-633 2-29 (194)
156 PLN00020 ribulose bisphosphate 94.6 0.032 7E-07 61.7 4.0 74 601-689 146-219 (413)
157 cd01672 TMPK Thymidine monopho 94.6 0.04 8.7E-07 54.7 4.4 37 606-643 3-39 (200)
158 COG1703 ArgK Putative periplas 94.5 0.058 1.3E-06 57.8 5.6 60 593-652 41-101 (323)
159 PRK14738 gmk guanylate kinase; 94.5 0.018 3.9E-07 58.9 1.8 26 601-626 11-36 (206)
160 COG1222 RPT1 ATP-dependent 26S 94.5 0.028 6.1E-07 61.4 3.3 124 595-739 175-306 (406)
161 PF03205 MobB: Molybdopterin g 94.5 0.061 1.3E-06 51.8 5.3 37 605-641 2-39 (140)
162 COG1221 PspF Transcriptional r 94.5 0.052 1.1E-06 60.9 5.5 123 593-731 91-222 (403)
163 TIGR02525 plasmid_TraJ plasmid 94.5 0.23 5E-06 55.5 10.6 27 602-628 148-174 (372)
164 PRK00300 gmk guanylate kinase; 94.5 0.023 5.1E-07 57.4 2.6 28 601-628 3-30 (205)
165 PF13191 AAA_16: AAA ATPase do 94.5 0.034 7.3E-07 54.7 3.6 28 602-629 23-50 (185)
166 PRK05563 DNA polymerase III su 94.4 0.09 2E-06 61.9 7.6 29 601-629 36-64 (559)
167 PF08433 KTI12: Chromatin asso 94.4 0.024 5.2E-07 60.6 2.6 38 606-645 4-41 (270)
168 PRK08691 DNA polymerase III su 94.4 0.092 2E-06 62.7 7.6 28 602-629 37-64 (709)
169 PRK14531 adenylate kinase; Pro 94.4 0.033 7.2E-07 55.7 3.5 25 604-628 3-27 (183)
170 PRK03992 proteasome-activating 94.4 0.048 1E-06 61.3 5.0 26 603-628 165-190 (389)
171 PRK13949 shikimate kinase; Pro 94.4 0.032 7E-07 55.3 3.3 24 605-628 3-26 (169)
172 TIGR01618 phage_P_loop phage n 94.4 0.029 6.3E-07 58.1 3.0 23 602-624 11-33 (220)
173 PF10662 PduV-EutP: Ethanolami 94.4 0.027 5.9E-07 54.4 2.6 22 605-626 3-24 (143)
174 PRK14532 adenylate kinase; Pro 94.3 0.031 6.6E-07 55.9 3.0 24 605-628 2-25 (188)
175 PRK13900 type IV secretion sys 94.3 0.038 8.2E-07 60.9 3.9 33 596-628 153-185 (332)
176 PRK15429 formate hydrogenlyase 94.3 0.19 4.2E-06 60.7 10.3 120 595-731 391-519 (686)
177 TIGR01242 26Sp45 26S proteasom 94.3 0.055 1.2E-06 60.2 5.2 26 603-628 156-181 (364)
178 cd00046 DEXDc DEAD-like helica 94.3 0.03 6.5E-07 51.1 2.7 46 604-649 1-46 (144)
179 PF13086 AAA_11: AAA domain; P 94.3 0.046 9.9E-07 55.4 4.3 23 605-627 19-41 (236)
180 PRK13851 type IV secretion sys 94.3 0.034 7.5E-07 61.4 3.5 31 598-628 157-187 (344)
181 PF01926 MMR_HSR1: 50S ribosom 94.3 0.034 7.4E-07 50.8 3.0 80 606-692 2-91 (116)
182 PRK07667 uridine kinase; Provi 94.3 0.068 1.5E-06 54.0 5.3 38 603-640 17-54 (193)
183 PRK05541 adenylylsulfate kinas 94.2 0.042 9E-07 54.4 3.7 30 600-629 4-33 (176)
184 COG3842 PotA ABC-type spermidi 94.2 0.024 5.1E-07 62.6 2.1 23 606-628 34-56 (352)
185 cd02021 GntK Gluconate kinase 94.2 0.034 7.5E-07 53.3 3.0 23 606-628 2-24 (150)
186 TIGR00678 holB DNA polymerase 94.2 0.22 4.8E-06 49.8 9.0 28 601-628 12-39 (188)
187 KOG0743|consensus 94.2 0.036 7.7E-07 62.3 3.4 36 603-643 235-270 (457)
188 TIGR03263 guanyl_kin guanylate 94.2 0.029 6.4E-07 55.4 2.5 24 604-627 2-25 (180)
189 PRK13768 GTPase; Provisional 94.2 0.058 1.3E-06 57.0 4.9 40 604-643 3-42 (253)
190 PRK06893 DNA replication initi 94.2 0.047 1E-06 56.7 4.2 34 603-636 39-72 (229)
191 PF13479 AAA_24: AAA domain 94.2 0.094 2E-06 53.9 6.3 21 603-623 3-23 (213)
192 PRK02496 adk adenylate kinase; 94.2 0.037 8.1E-07 55.1 3.2 23 606-628 4-26 (184)
193 TIGR00150 HI0065_YjeE ATPase, 94.2 0.057 1.2E-06 51.6 4.3 35 595-629 14-48 (133)
194 cd01428 ADK Adenylate kinase ( 94.1 0.036 7.8E-07 55.3 3.1 23 606-628 2-24 (194)
195 PRK10787 DNA-binding ATP-depen 94.1 0.71 1.5E-05 56.6 14.6 90 604-709 350-449 (784)
196 COG3829 RocR Transcriptional r 94.1 0.082 1.8E-06 60.8 6.1 121 598-731 263-389 (560)
197 PRK09183 transposase/IS protei 94.1 0.3 6.4E-06 51.9 10.0 36 600-635 99-134 (259)
198 PRK06851 hypothetical protein; 94.1 0.56 1.2E-05 52.3 12.5 46 593-638 202-249 (367)
199 TIGR01817 nifA Nif-specific re 94.1 0.098 2.1E-06 61.3 6.9 120 595-731 211-339 (534)
200 COG0563 Adk Adenylate kinase a 94.1 0.04 8.6E-07 55.3 3.1 94 605-706 2-102 (178)
201 cd00227 CPT Chloramphenicol (C 94.1 0.04 8.6E-07 54.6 3.1 25 604-628 3-27 (175)
202 TIGR00750 lao LAO/AO transport 94.1 0.064 1.4E-06 58.1 5.0 42 602-643 33-74 (300)
203 PF00931 NB-ARC: NB-ARC domain 94.1 0.17 3.6E-06 53.7 8.1 34 593-626 5-42 (287)
204 TIGR02533 type_II_gspE general 94.0 0.076 1.6E-06 61.4 5.8 37 593-629 231-268 (486)
205 COG1239 ChlI Mg-chelatase subu 94.0 0.055 1.2E-06 60.4 4.4 114 605-731 40-195 (423)
206 PF03215 Rad17: Rad17 cell cyc 94.0 0.052 1.1E-06 63.2 4.4 35 605-643 47-81 (519)
207 cd02020 CMPK Cytidine monophos 94.0 0.043 9.4E-07 51.9 3.2 23 606-628 2-24 (147)
208 KOG0745|consensus 94.0 0.059 1.3E-06 60.2 4.5 87 602-703 225-313 (564)
209 COG4525 TauB ABC-type taurine 94.0 0.034 7.4E-07 56.2 2.5 28 601-628 29-56 (259)
210 PRK13947 shikimate kinase; Pro 94.0 0.042 9.2E-07 53.8 3.2 24 605-628 3-26 (171)
211 PRK10416 signal recognition pa 94.0 0.063 1.4E-06 58.8 4.7 39 603-641 114-152 (318)
212 KOG0744|consensus 94.0 0.041 8.8E-07 59.4 3.1 28 601-628 175-202 (423)
213 cd01983 Fer4_NifH The Fer4_Nif 94.0 0.098 2.1E-06 45.1 5.1 31 606-636 2-32 (99)
214 cd02023 UMPK Uridine monophosp 93.9 0.042 9.2E-07 55.4 3.1 22 606-627 2-23 (198)
215 PF01443 Viral_helicase1: Vira 93.9 0.089 1.9E-06 54.0 5.5 22 606-627 1-22 (234)
216 PF00625 Guanylate_kin: Guanyl 93.9 0.046 9.9E-07 54.6 3.3 26 603-628 2-27 (183)
217 TIGR02880 cbbX_cfxQ probable R 93.9 0.046 1E-06 58.8 3.5 30 603-632 58-87 (284)
218 KOG0733|consensus 93.9 0.039 8.4E-07 63.8 3.0 26 603-628 223-248 (802)
219 COG1219 ClpX ATP-dependent pro 93.9 0.059 1.3E-06 58.1 4.2 59 602-672 96-154 (408)
220 PRK07764 DNA polymerase III su 93.9 0.054 1.2E-06 66.3 4.5 29 601-629 35-63 (824)
221 PRK06696 uridine kinase; Valid 93.9 0.059 1.3E-06 55.7 4.2 32 603-634 22-53 (223)
222 cd02027 APSK Adenosine 5'-phos 93.9 0.069 1.5E-06 51.7 4.3 26 606-631 2-27 (149)
223 TIGR01425 SRP54_euk signal rec 93.8 0.32 6.9E-06 55.3 10.1 38 604-641 101-138 (429)
224 PF00005 ABC_tran: ABC transpo 93.8 0.034 7.5E-07 52.2 2.1 26 603-628 11-36 (137)
225 KOG0738|consensus 93.8 0.066 1.4E-06 59.1 4.4 24 603-626 245-268 (491)
226 KOG0727|consensus 93.8 0.051 1.1E-06 56.7 3.4 33 595-627 179-213 (408)
227 PF00437 T2SE: Type II/IV secr 93.8 0.051 1.1E-06 57.6 3.6 34 597-630 121-154 (270)
228 PF00910 RNA_helicase: RNA hel 93.8 0.045 9.8E-07 49.9 2.8 23 606-628 1-23 (107)
229 COG2884 FtsE Predicted ATPase 93.8 0.064 1.4E-06 54.1 4.0 26 603-628 28-53 (223)
230 PRK05057 aroK shikimate kinase 93.8 0.046 1E-06 54.3 3.1 26 603-628 4-29 (172)
231 PRK05480 uridine/cytidine kina 93.8 0.041 8.9E-07 56.0 2.7 25 603-627 6-30 (209)
232 PRK14970 DNA polymerase III su 93.8 0.15 3.2E-06 56.7 7.3 27 603-629 39-65 (367)
233 cd02025 PanK Pantothenate kina 93.8 0.074 1.6E-06 55.1 4.6 24 606-629 2-25 (220)
234 PRK00698 tmk thymidylate kinas 93.8 0.071 1.5E-06 53.6 4.4 30 604-633 4-33 (205)
235 cd03116 MobB Molybdenum is an 93.7 0.11 2.3E-06 51.3 5.4 34 605-638 3-36 (159)
236 cd03114 ArgK-like The function 93.7 0.088 1.9E-06 51.1 4.7 38 606-643 2-39 (148)
237 COG1120 FepC ABC-type cobalami 93.7 0.036 7.8E-07 58.7 2.2 27 603-629 28-54 (258)
238 PF09439 SRPRB: Signal recogni 93.7 0.053 1.1E-06 54.5 3.2 115 602-739 2-130 (181)
239 cd03280 ABC_MutS2 MutS2 homolo 93.7 0.1 2.2E-06 52.9 5.3 88 605-695 30-124 (200)
240 COG3604 FhlA Transcriptional r 93.7 0.17 3.6E-06 57.7 7.4 121 600-734 243-370 (550)
241 PRK14962 DNA polymerase III su 93.6 0.075 1.6E-06 61.3 4.8 27 603-629 36-62 (472)
242 TIGR00064 ftsY signal recognit 93.6 0.077 1.7E-06 56.8 4.6 39 603-641 72-110 (272)
243 TIGR00235 udk uridine kinase. 93.6 0.053 1.1E-06 55.3 3.2 25 604-628 7-31 (207)
244 PRK08903 DnaA regulatory inact 93.6 0.1 2.2E-06 53.8 5.3 32 602-633 41-72 (227)
245 PRK06547 hypothetical protein; 93.6 0.055 1.2E-06 53.9 3.1 25 603-627 15-39 (172)
246 PF05673 DUF815: Protein of un 93.6 0.18 4E-06 52.9 7.1 78 603-706 52-133 (249)
247 KOG0733|consensus 93.6 0.069 1.5E-06 61.9 4.2 74 596-689 536-611 (802)
248 PRK12727 flagellar biosynthesi 93.6 0.19 4.2E-06 58.3 7.9 106 602-715 349-468 (559)
249 PRK10751 molybdopterin-guanine 93.6 0.1 2.2E-06 52.1 5.0 30 605-634 8-37 (173)
250 TIGR01351 adk adenylate kinase 93.5 0.053 1.2E-06 55.4 3.1 23 606-628 2-24 (210)
251 PRK09270 nucleoside triphospha 93.5 0.083 1.8E-06 54.8 4.5 32 603-634 33-64 (229)
252 PF13604 AAA_30: AAA domain; P 93.5 0.064 1.4E-06 54.5 3.6 34 603-636 18-51 (196)
253 PTZ00088 adenylate kinase 1; P 93.5 0.056 1.2E-06 56.4 3.2 23 606-628 9-31 (229)
254 PRK14527 adenylate kinase; Pro 93.5 0.058 1.3E-06 54.2 3.1 25 604-628 7-31 (191)
255 CHL00095 clpC Clp protease ATP 93.5 0.21 4.6E-06 61.5 8.6 37 593-629 188-226 (821)
256 TIGR03420 DnaA_homol_Hda DnaA 93.5 0.094 2E-06 53.7 4.7 28 602-629 37-64 (226)
257 PF00406 ADK: Adenylate kinase 93.4 0.058 1.3E-06 52.0 3.0 21 608-628 1-21 (151)
258 PRK05707 DNA polymerase III su 93.4 0.23 5E-06 54.6 8.0 30 600-629 19-48 (328)
259 PRK04040 adenylate kinase; Pro 93.4 0.062 1.4E-06 54.3 3.3 24 605-628 4-27 (188)
260 PRK14737 gmk guanylate kinase; 93.4 0.056 1.2E-06 54.5 3.0 24 604-627 5-28 (186)
261 COG3638 ABC-type phosphate/pho 93.4 0.052 1.1E-06 56.4 2.7 24 604-627 31-54 (258)
262 TIGR03015 pepcterm_ATPase puta 93.4 0.086 1.9E-06 55.5 4.5 30 599-628 38-68 (269)
263 PRK10436 hypothetical protein; 93.4 0.42 9.1E-06 55.0 10.3 37 593-629 207-244 (462)
264 KOG0991|consensus 93.4 0.078 1.7E-06 55.0 3.8 27 601-627 46-72 (333)
265 PRK14528 adenylate kinase; Pro 93.4 0.063 1.4E-06 54.0 3.2 24 605-628 3-26 (186)
266 PRK00625 shikimate kinase; Pro 93.4 0.064 1.4E-06 53.5 3.2 24 605-628 2-25 (173)
267 PF03266 NTPase_1: NTPase; In 93.3 0.06 1.3E-06 53.5 2.9 106 606-715 2-135 (168)
268 PRK13764 ATPase; Provisional 93.3 0.1 2.2E-06 61.6 5.3 31 601-631 255-285 (602)
269 TIGR00176 mobB molybdopterin-g 93.3 0.12 2.6E-06 50.6 4.9 29 606-634 2-30 (155)
270 PTZ00454 26S protease regulato 93.3 0.059 1.3E-06 60.8 3.2 27 602-628 178-204 (398)
271 PRK08699 DNA polymerase III su 93.3 0.15 3.3E-06 55.9 6.3 28 601-628 19-46 (325)
272 TIGR03689 pup_AAA proteasome A 93.3 0.052 1.1E-06 62.9 2.7 27 602-628 215-241 (512)
273 PF02562 PhoH: PhoH-like prote 93.3 0.25 5.3E-06 50.8 7.3 126 596-721 12-161 (205)
274 PRK08939 primosomal protein Dn 93.3 0.27 5.8E-06 53.6 8.1 86 602-705 155-245 (306)
275 TIGR02397 dnaX_nterm DNA polym 93.3 0.1 2.2E-06 57.3 5.0 26 603-628 36-61 (355)
276 PRK06761 hypothetical protein; 93.3 0.082 1.8E-06 56.8 4.0 33 604-636 4-36 (282)
277 PF12846 AAA_10: AAA-like doma 93.2 0.094 2E-06 55.5 4.5 27 604-630 2-28 (304)
278 COG0703 AroK Shikimate kinase 93.2 0.071 1.5E-06 53.1 3.2 25 604-628 3-27 (172)
279 CHL00181 cbbX CbbX; Provisiona 93.2 0.069 1.5E-06 57.6 3.4 27 605-631 61-87 (287)
280 PRK00279 adk adenylate kinase; 93.2 0.069 1.5E-06 54.8 3.2 23 606-628 3-25 (215)
281 COG1117 PstB ABC-type phosphat 93.1 0.068 1.5E-06 54.9 3.0 26 602-627 32-57 (253)
282 PF07724 AAA_2: AAA domain (Cd 93.1 0.078 1.7E-06 52.8 3.4 104 604-722 4-120 (171)
283 TIGR02538 type_IV_pilB type IV 93.1 0.35 7.5E-06 57.1 9.3 37 593-629 305-342 (564)
284 TIGR00390 hslU ATP-dependent p 93.0 0.11 2.5E-06 58.5 4.8 26 603-628 47-72 (441)
285 PRK00889 adenylylsulfate kinas 93.0 0.11 2.4E-06 51.3 4.3 38 604-643 5-42 (175)
286 COG1855 ATPase (PilT family) [ 93.0 0.1 2.2E-06 58.7 4.3 183 368-654 127-320 (604)
287 TIGR03819 heli_sec_ATPase heli 93.0 0.14 3.1E-06 56.5 5.5 36 593-628 167-203 (340)
288 PRK05439 pantothenate kinase; 93.0 0.2 4.4E-06 54.6 6.5 28 603-630 86-113 (311)
289 PRK11889 flhF flagellar biosyn 92.9 0.11 2.5E-06 58.2 4.6 106 603-713 241-359 (436)
290 cd04159 Arl10_like Arl10-like 92.9 0.064 1.4E-06 50.5 2.3 21 606-626 2-22 (159)
291 smart00072 GuKc Guanylate kina 92.9 0.081 1.7E-06 53.0 3.1 25 603-627 2-26 (184)
292 PRK06851 hypothetical protein; 92.9 0.13 2.9E-06 57.2 5.1 33 602-634 29-61 (367)
293 PRK12377 putative replication 92.9 0.12 2.6E-06 54.6 4.5 34 603-636 101-134 (248)
294 PLN02200 adenylate kinase fami 92.9 0.08 1.7E-06 55.4 3.2 26 603-628 43-68 (234)
295 PTZ00301 uridine kinase; Provi 92.9 0.12 2.6E-06 53.2 4.4 25 604-628 4-28 (210)
296 PF13521 AAA_28: AAA domain; P 92.8 0.066 1.4E-06 52.3 2.4 21 606-626 2-22 (163)
297 TIGR02915 PEP_resp_reg putativ 92.8 0.21 4.6E-06 56.7 6.9 117 598-731 157-282 (445)
298 COG0194 Gmk Guanylate kinase [ 92.8 0.079 1.7E-06 53.2 2.9 24 604-627 5-28 (191)
299 cd03292 ABC_FtsE_transporter F 92.8 0.067 1.4E-06 54.5 2.5 27 602-628 26-52 (214)
300 PRK06620 hypothetical protein; 92.8 0.08 1.7E-06 54.6 3.1 24 604-627 45-68 (214)
301 PRK13765 ATP-dependent proteas 92.8 0.13 2.9E-06 61.2 5.3 47 582-628 22-75 (637)
302 PRK09825 idnK D-gluconate kina 92.8 0.087 1.9E-06 52.6 3.2 25 604-628 4-28 (176)
303 PF00270 DEAD: DEAD/DEAH box h 92.8 0.22 4.8E-06 48.0 6.0 47 596-643 7-54 (169)
304 PF14532 Sigma54_activ_2: Sigm 92.8 0.069 1.5E-06 50.8 2.4 35 594-628 12-46 (138)
305 TIGR02639 ClpA ATP-dependent C 92.8 0.28 6E-06 59.8 8.1 37 593-629 191-229 (731)
306 PRK06921 hypothetical protein; 92.8 0.32 7E-06 51.9 7.7 33 602-634 116-149 (266)
307 PF00308 Bac_DnaA: Bacterial d 92.7 0.15 3.2E-06 52.8 4.9 36 604-639 35-70 (219)
308 TIGR01241 FtsH_fam ATP-depende 92.7 0.13 2.8E-06 59.8 4.9 25 603-627 88-112 (495)
309 PRK06871 DNA polymerase III su 92.7 0.39 8.4E-06 52.8 8.3 35 595-629 16-50 (325)
310 COG4088 Predicted nucleotide k 92.7 0.085 1.8E-06 53.8 2.9 25 605-629 3-27 (261)
311 PF02367 UPF0079: Uncharacteri 92.7 0.15 3.2E-06 48.2 4.3 35 595-629 7-41 (123)
312 KOG0054|consensus 92.7 0.17 3.6E-06 64.6 6.1 124 600-724 1163-1358(1381)
313 cd03258 ABC_MetN_methionine_tr 92.7 0.085 1.8E-06 54.6 3.0 28 602-629 30-57 (233)
314 PRK08727 hypothetical protein; 92.6 0.14 3E-06 53.5 4.5 34 603-636 41-74 (233)
315 TIGR02173 cyt_kin_arch cytidyl 92.6 0.091 2E-06 51.2 3.0 23 605-627 2-24 (171)
316 KOG1970|consensus 92.6 0.14 2.9E-06 58.9 4.7 44 605-652 112-155 (634)
317 PTZ00361 26 proteosome regulat 92.6 0.089 1.9E-06 60.0 3.3 27 602-628 216-242 (438)
318 cd03238 ABC_UvrA The excision 92.6 0.081 1.7E-06 53.0 2.6 22 603-624 21-42 (176)
319 PRK13975 thymidylate kinase; P 92.5 0.097 2.1E-06 52.5 3.2 25 604-628 3-27 (196)
320 PRK14974 cell division protein 92.5 0.12 2.6E-06 57.0 4.1 34 603-636 140-173 (336)
321 cd04155 Arl3 Arl3 subfamily. 92.5 0.08 1.7E-06 51.4 2.5 24 603-626 14-37 (173)
322 PLN02796 D-glycerate 3-kinase 92.5 0.15 3.3E-06 56.1 4.9 28 606-633 103-130 (347)
323 PHA02530 pseT polynucleotide k 92.5 0.088 1.9E-06 56.6 3.0 24 604-627 3-26 (300)
324 PRK15177 Vi polysaccharide exp 92.5 0.084 1.8E-06 54.2 2.7 27 602-628 12-38 (213)
325 KOG2228|consensus 92.5 0.19 4.1E-06 54.8 5.4 46 600-645 46-91 (408)
326 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.5 0.078 1.7E-06 54.2 2.4 27 602-628 29-55 (218)
327 COG4619 ABC-type uncharacteriz 92.5 0.088 1.9E-06 52.2 2.6 26 603-628 29-54 (223)
328 PRK00771 signal recognition pa 92.5 0.13 2.9E-06 58.6 4.5 39 603-641 95-133 (437)
329 KOG0055|consensus 92.5 0.092 2E-06 65.6 3.4 33 599-631 1012-1044(1228)
330 PRK12723 flagellar biosynthesi 92.4 0.15 3.2E-06 57.4 4.7 38 604-641 175-216 (388)
331 PRK03731 aroL shikimate kinase 92.4 0.11 2.4E-06 50.9 3.3 25 604-628 3-27 (171)
332 PRK14526 adenylate kinase; Pro 92.4 0.1 2.2E-06 53.8 3.2 23 606-628 3-25 (211)
333 PRK13946 shikimate kinase; Pro 92.4 0.11 2.4E-06 52.0 3.3 26 603-628 10-35 (184)
334 PRK14960 DNA polymerase III su 92.3 0.11 2.3E-06 61.7 3.7 29 601-629 35-63 (702)
335 TIGR02315 ABC_phnC phosphonate 92.3 0.081 1.8E-06 55.0 2.4 27 602-628 27-53 (243)
336 PRK01184 hypothetical protein; 92.3 0.1 2.2E-06 52.0 2.9 21 605-626 3-23 (184)
337 smart00173 RAS Ras subfamily o 92.3 0.1 2.2E-06 50.2 2.9 22 605-626 2-23 (164)
338 cd03264 ABC_drug_resistance_li 92.3 0.092 2E-06 53.4 2.7 24 605-628 27-50 (211)
339 PRK12726 flagellar biosynthesi 92.3 0.16 3.4E-06 56.8 4.7 100 602-706 205-313 (407)
340 cd00154 Rab Rab family. Rab G 92.3 0.1 2.2E-06 49.0 2.8 21 606-626 3-23 (159)
341 cd00876 Ras Ras family. The R 92.3 0.097 2.1E-06 49.6 2.7 21 606-626 2-22 (160)
342 PRK08356 hypothetical protein; 92.3 0.1 2.2E-06 52.8 2.9 21 605-625 7-27 (195)
343 PRK14963 DNA polymerase III su 92.3 0.25 5.3E-06 57.5 6.4 27 603-629 36-62 (504)
344 cd04138 H_N_K_Ras_like H-Ras/N 92.3 0.1 2.2E-06 49.6 2.8 22 605-626 3-24 (162)
345 TIGR01448 recD_rel helicase, p 92.3 0.46 9.9E-06 57.8 9.0 99 601-707 336-443 (720)
346 COG1102 Cmk Cytidylate kinase 92.3 0.11 2.3E-06 51.2 2.9 23 606-628 3-25 (179)
347 TIGR00554 panK_bact pantothena 92.3 0.14 3.1E-06 55.3 4.2 28 603-630 62-89 (290)
348 TIGR00960 3a0501s02 Type II (G 92.2 0.085 1.8E-06 53.9 2.4 27 602-628 28-54 (216)
349 cd03226 ABC_cobalt_CbiO_domain 92.2 0.087 1.9E-06 53.4 2.4 27 602-628 25-51 (205)
350 PRK04182 cytidylate kinase; Pr 92.2 0.11 2.3E-06 51.0 3.0 24 605-628 2-25 (180)
351 PRK07952 DNA replication prote 92.2 0.16 3.4E-06 53.6 4.4 32 604-635 100-131 (244)
352 cd03222 ABC_RNaseL_inhibitor T 92.2 0.084 1.8E-06 52.9 2.2 28 601-628 23-50 (177)
353 PRK14529 adenylate kinase; Pro 92.2 0.11 2.5E-06 53.9 3.2 23 606-628 3-25 (223)
354 smart00175 RAB Rab subfamily o 92.2 0.097 2.1E-06 50.0 2.6 21 606-626 3-23 (164)
355 cd04163 Era Era subfamily. Er 92.2 0.1 2.2E-06 49.3 2.7 23 604-626 4-26 (168)
356 PF00735 Septin: Septin; Inte 92.1 0.089 1.9E-06 56.6 2.5 24 603-626 4-27 (281)
357 TIGR03608 L_ocin_972_ABC putat 92.1 0.091 2E-06 53.2 2.4 27 602-628 23-49 (206)
358 TIGR02673 FtsE cell division A 92.1 0.091 2E-06 53.6 2.4 27 602-628 27-53 (214)
359 cd03269 ABC_putative_ATPase Th 92.1 0.1 2.2E-06 53.1 2.7 27 602-628 25-51 (210)
360 PRK14956 DNA polymerase III su 92.1 0.13 2.8E-06 59.1 3.9 27 603-629 40-66 (484)
361 cd03224 ABC_TM1139_LivF_branch 92.1 0.096 2.1E-06 53.6 2.6 27 602-628 25-51 (222)
362 PF01583 APS_kinase: Adenylyls 92.1 0.17 3.7E-06 49.7 4.1 32 604-635 3-34 (156)
363 PRK13342 recombination factor 92.1 0.13 2.9E-06 58.1 4.0 24 604-627 37-60 (413)
364 cd03259 ABC_Carb_Solutes_like 92.1 0.093 2E-06 53.5 2.4 27 602-628 25-51 (213)
365 PRK05564 DNA polymerase III su 92.1 0.31 6.8E-06 53.0 6.6 28 601-628 24-51 (313)
366 cd03225 ABC_cobalt_CbiO_domain 92.1 0.094 2E-06 53.3 2.4 26 603-628 27-52 (211)
367 COG1125 OpuBA ABC-type proline 92.0 0.1 2.2E-06 55.0 2.6 27 602-628 26-52 (309)
368 cd03262 ABC_HisP_GlnQ_permease 92.0 0.1 2.3E-06 53.0 2.7 27 602-628 25-51 (213)
369 cd03230 ABC_DR_subfamily_A Thi 92.0 0.11 2.3E-06 51.4 2.7 27 602-628 25-51 (173)
370 cd03229 ABC_Class3 This class 92.0 0.097 2.1E-06 52.0 2.4 27 602-628 25-51 (178)
371 cd01876 YihA_EngB The YihA (En 92.0 0.11 2.4E-06 49.3 2.7 19 606-624 2-20 (170)
372 COG2805 PilT Tfp pilus assembl 92.0 0.18 4E-06 54.2 4.5 32 599-630 120-152 (353)
373 cd02034 CooC The accessory pro 92.0 0.23 4.9E-06 46.3 4.7 39 606-644 2-40 (116)
374 TIGR01166 cbiO cobalt transpor 92.0 0.11 2.3E-06 52.1 2.7 27 602-628 17-43 (190)
375 PRK14971 DNA polymerase III su 92.0 0.41 9E-06 57.0 8.0 27 602-628 38-64 (614)
376 KOG0989|consensus 92.0 0.22 4.8E-06 53.6 5.1 24 605-628 59-82 (346)
377 PRK13948 shikimate kinase; Pro 92.0 0.11 2.4E-06 52.3 2.7 29 600-628 7-35 (182)
378 COG1124 DppF ABC-type dipeptid 91.9 0.11 2.3E-06 54.4 2.6 26 603-628 33-58 (252)
379 cd01918 HprK_C HprK/P, the bif 91.9 0.14 3E-06 50.0 3.2 24 603-626 14-37 (149)
380 cd03261 ABC_Org_Solvent_Resist 91.9 0.11 2.3E-06 54.0 2.7 27 602-628 25-51 (235)
381 cd03256 ABC_PhnC_transporter A 91.9 0.099 2.1E-06 54.2 2.4 27 602-628 26-52 (241)
382 PRK15455 PrkA family serine pr 91.9 0.12 2.6E-06 60.4 3.2 29 602-630 102-130 (644)
383 PRK08116 hypothetical protein; 91.9 0.25 5.4E-06 52.8 5.5 33 602-634 113-145 (268)
384 cd04160 Arfrp1 Arfrp1 subfamil 91.9 0.13 2.7E-06 49.7 3.0 23 605-627 1-23 (167)
385 cd04119 RJL RJL (RabJ-Like) su 91.9 0.12 2.6E-06 49.4 2.8 22 605-626 2-23 (168)
386 cd03301 ABC_MalK_N The N-termi 91.9 0.1 2.2E-06 53.1 2.4 27 602-628 25-51 (213)
387 PF01637 Arch_ATPase: Archaeal 91.9 0.17 3.7E-06 51.2 4.0 35 594-628 9-45 (234)
388 cd03273 ABC_SMC2_euk Eukaryoti 91.9 0.13 2.7E-06 54.1 3.2 26 603-628 25-50 (251)
389 TIGR02211 LolD_lipo_ex lipopro 91.8 0.1 2.2E-06 53.4 2.5 27 602-628 30-56 (221)
390 COG1127 Ttg2A ABC-type transpo 91.8 0.1 2.2E-06 54.4 2.4 46 604-649 35-80 (263)
391 cd03293 ABC_NrtD_SsuB_transpor 91.8 0.098 2.1E-06 53.7 2.3 26 603-628 30-55 (220)
392 cd03263 ABC_subfamily_A The AB 91.8 0.1 2.2E-06 53.4 2.4 26 603-628 28-53 (220)
393 PRK03846 adenylylsulfate kinas 91.8 0.2 4.3E-06 50.8 4.4 28 604-631 25-52 (198)
394 cd01855 YqeH YqeH. YqeH is an 91.8 0.2 4.3E-06 50.1 4.4 26 602-627 126-151 (190)
395 cd03232 ABC_PDR_domain2 The pl 91.7 0.11 2.4E-06 52.2 2.6 25 602-626 32-56 (192)
396 smart00350 MCM minichromosome 91.7 0.6 1.3E-05 54.4 8.9 107 605-731 238-351 (509)
397 PRK14088 dnaA chromosomal repl 91.7 0.21 4.6E-06 57.1 5.1 37 604-640 131-167 (440)
398 cd03246 ABCC_Protease_Secretio 91.7 0.12 2.7E-06 51.0 2.8 26 603-628 28-53 (173)
399 cd03260 ABC_PstB_phosphate_tra 91.7 0.12 2.7E-06 53.2 2.9 25 603-627 26-50 (227)
400 cd04139 RalA_RalB RalA/RalB su 91.7 0.12 2.7E-06 49.2 2.7 22 605-626 2-23 (164)
401 PRK06835 DNA replication prote 91.7 0.19 4.1E-06 55.3 4.4 34 602-635 182-215 (329)
402 cd03265 ABC_DrrA DrrA is the A 91.7 0.11 2.4E-06 53.3 2.4 26 603-628 26-51 (220)
403 cd03283 ABC_MutS-like MutS-lik 91.6 0.14 3.1E-06 52.1 3.2 25 603-627 25-49 (199)
404 cd03268 ABC_BcrA_bacitracin_re 91.6 0.11 2.4E-06 52.7 2.4 27 602-628 25-51 (208)
405 PRK11331 5-methylcytosine-spec 91.6 0.89 1.9E-05 51.9 9.7 112 421-537 272-393 (459)
406 PRK14957 DNA polymerase III su 91.6 0.17 3.7E-06 59.3 4.2 35 595-629 27-64 (546)
407 TIGR03410 urea_trans_UrtE urea 91.6 0.12 2.7E-06 53.2 2.7 27 602-628 25-51 (230)
408 cd03257 ABC_NikE_OppD_transpor 91.6 0.12 2.6E-06 53.1 2.6 26 603-628 31-56 (228)
409 cd04137 RheB Rheb (Ras Homolog 91.6 0.14 3E-06 50.2 3.0 23 604-626 2-24 (180)
410 PRK13541 cytochrome c biogenes 91.6 0.12 2.6E-06 52.1 2.5 26 603-628 26-51 (195)
411 COG1122 CbiO ABC-type cobalt t 91.6 0.097 2.1E-06 54.9 1.9 27 603-629 30-56 (235)
412 cd03219 ABC_Mj1267_LivG_branch 91.5 0.12 2.5E-06 53.6 2.5 27 602-628 25-51 (236)
413 TIGR01978 sufC FeS assembly AT 91.5 0.12 2.7E-06 53.6 2.7 26 602-627 25-50 (243)
414 TIGR01447 recD exodeoxyribonuc 91.5 0.57 1.2E-05 55.5 8.5 31 598-628 155-185 (586)
415 cd03235 ABC_Metallic_Cations A 91.5 0.12 2.5E-06 52.8 2.4 27 602-628 24-50 (213)
416 PRK14242 phosphate transporter 91.5 0.13 2.8E-06 54.0 2.8 25 603-627 32-56 (253)
417 COG4962 CpaF Flp pilus assembl 91.5 0.22 4.7E-06 54.6 4.5 36 593-628 163-198 (355)
418 cd01858 NGP_1 NGP-1. Autoanti 91.5 0.14 3E-06 49.7 2.8 24 603-626 102-125 (157)
419 PRK11629 lolD lipoprotein tran 91.5 0.12 2.6E-06 53.6 2.5 27 602-628 34-60 (233)
420 cd00157 Rho Rho (Ras homology) 91.5 0.14 3E-06 49.4 2.8 21 606-626 3-23 (171)
421 cd04113 Rab4 Rab4 subfamily. 91.5 0.14 3E-06 49.1 2.8 21 606-626 3-23 (161)
422 PRK09087 hypothetical protein; 91.4 0.15 3.3E-06 53.0 3.2 25 603-627 44-68 (226)
423 PRK11124 artP arginine transpo 91.4 0.12 2.6E-06 53.8 2.4 27 602-628 27-53 (242)
424 TIGR03345 VI_ClpV1 type VI sec 91.4 0.37 7.9E-06 59.6 7.0 37 593-629 196-234 (852)
425 cd01870 RhoA_like RhoA-like su 91.4 0.14 3.1E-06 49.8 2.9 24 603-626 1-24 (175)
426 TIGR00231 small_GTP small GTP- 91.4 0.14 3.1E-06 47.5 2.7 23 605-627 3-25 (161)
427 COG2804 PulE Type II secretory 91.4 0.39 8.4E-06 55.1 6.6 41 589-629 243-284 (500)
428 cd03228 ABCC_MRP_Like The MRP 91.4 0.13 2.9E-06 50.7 2.6 27 602-628 27-53 (171)
429 TIGR03575 selen_PSTK_euk L-ser 91.4 0.21 4.5E-06 55.2 4.3 31 606-636 2-33 (340)
430 COG1474 CDC6 Cdc6-related prot 91.4 0.3 6.5E-06 54.6 5.6 80 605-689 44-130 (366)
431 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.4 0.13 2.8E-06 49.4 2.5 27 602-628 25-51 (144)
432 PRK15453 phosphoribulokinase; 91.3 0.21 4.6E-06 53.6 4.2 30 603-632 5-34 (290)
433 cd03216 ABC_Carb_Monos_I This 91.3 0.14 3.1E-06 50.2 2.7 27 602-628 25-51 (163)
434 cd02029 PRK_like Phosphoribulo 91.3 0.25 5.4E-06 52.7 4.7 67 606-674 2-82 (277)
435 cd03296 ABC_CysA_sulfate_impor 91.3 0.12 2.7E-06 53.7 2.4 27 602-628 27-53 (239)
436 PRK13540 cytochrome c biogenes 91.3 0.13 2.8E-06 52.1 2.5 27 602-628 26-52 (200)
437 cd02024 NRK1 Nicotinamide ribo 91.3 0.15 3.3E-06 51.5 3.0 23 606-628 2-24 (187)
438 PRK10908 cell division protein 91.3 0.14 3E-06 52.6 2.7 27 602-628 27-53 (222)
439 PRK10247 putative ABC transpor 91.3 0.13 2.9E-06 53.0 2.6 27 602-628 32-58 (225)
440 PRK06645 DNA polymerase III su 91.3 0.18 4E-06 58.5 4.0 27 603-629 43-69 (507)
441 cd03218 ABC_YhbG The ABC trans 91.3 0.14 3E-06 52.9 2.7 27 602-628 25-51 (232)
442 cd03247 ABCC_cytochrome_bd The 91.2 0.14 3E-06 50.9 2.5 26 603-628 28-53 (178)
443 PRK05642 DNA replication initi 91.2 0.26 5.6E-06 51.5 4.7 30 604-633 46-75 (234)
444 cd03254 ABCC_Glucan_exporter_l 91.2 0.14 3.1E-06 52.7 2.7 26 603-628 29-54 (229)
445 COG4181 Predicted ABC-type tra 91.2 0.15 3.3E-06 50.7 2.7 25 602-626 35-59 (228)
446 cd01124 KaiC KaiC is a circadi 91.2 0.28 6E-06 48.5 4.7 33 606-638 2-34 (187)
447 cd02037 MRP-like MRP (Multiple 91.2 0.48 1E-05 46.5 6.3 75 606-692 3-77 (169)
448 PRK10584 putative ABC transpor 91.2 0.14 3E-06 52.8 2.5 27 602-628 35-61 (228)
449 TIGR03864 PQQ_ABC_ATP ABC tran 91.2 0.14 3.1E-06 53.1 2.7 27 602-628 26-52 (236)
450 PF00071 Ras: Ras family; Int 91.2 0.18 3.8E-06 48.4 3.1 21 606-626 2-22 (162)
451 cd03297 ABC_ModC_molybdenum_tr 91.2 0.13 2.7E-06 52.6 2.3 25 604-628 24-48 (214)
452 cd03215 ABC_Carb_Monos_II This 91.1 0.15 3.2E-06 50.9 2.6 27 602-628 25-51 (182)
453 cd03266 ABC_NatA_sodium_export 91.1 0.14 3.1E-06 52.2 2.7 26 603-628 31-56 (218)
454 PRK11248 tauB taurine transpor 91.1 0.13 2.8E-06 54.3 2.4 26 603-628 27-52 (255)
455 TIGR02770 nickel_nikD nickel i 91.1 0.13 2.9E-06 53.2 2.4 27 602-628 11-37 (230)
456 TIGR00017 cmk cytidylate kinas 91.1 0.17 3.7E-06 52.4 3.1 24 605-628 4-27 (217)
457 PF01935 DUF87: Domain of unkn 91.1 0.27 5.8E-06 50.7 4.6 25 604-628 24-48 (229)
458 KOG3347|consensus 91.1 0.18 3.8E-06 49.1 2.9 49 601-655 5-53 (176)
459 KOG0731|consensus 91.1 0.13 2.7E-06 61.8 2.4 31 596-626 335-367 (774)
460 cd01862 Rab7 Rab7 subfamily. 91.1 0.15 3.3E-06 49.2 2.6 21 606-626 3-23 (172)
461 PRK05201 hslU ATP-dependent pr 91.0 0.21 4.6E-06 56.4 4.0 26 603-628 50-75 (443)
462 cd03223 ABCD_peroxisomal_ALDP 91.0 0.14 3.1E-06 50.3 2.4 27 602-628 26-52 (166)
463 PLN02674 adenylate kinase 91.0 0.17 3.6E-06 53.4 3.1 25 604-628 32-56 (244)
464 cd03214 ABC_Iron-Siderophores_ 91.0 0.14 3E-06 50.9 2.4 27 602-628 24-50 (180)
465 TIGR02323 CP_lyasePhnK phospho 91.0 0.13 2.8E-06 53.9 2.3 27 602-628 28-54 (253)
466 COG1121 ZnuC ABC-type Mn/Zn tr 91.0 0.18 3.9E-06 53.3 3.2 24 605-628 32-55 (254)
467 PHA02774 E1; Provisional 91.0 0.57 1.2E-05 54.8 7.5 26 603-628 434-459 (613)
468 PRK13543 cytochrome c biogenes 91.0 0.14 3E-06 52.5 2.3 27 602-628 36-62 (214)
469 PRK13973 thymidylate kinase; P 90.9 0.26 5.6E-06 50.6 4.3 38 605-643 5-42 (213)
470 PRK14240 phosphate transporter 90.9 0.15 3.2E-06 53.4 2.6 26 602-627 28-53 (250)
471 cd01860 Rab5_related Rab5-rela 90.9 0.16 3.5E-06 48.6 2.7 22 605-626 3-24 (163)
472 cd03295 ABC_OpuCA_Osmoprotecti 90.9 0.14 3.1E-06 53.3 2.5 27 602-628 26-52 (242)
473 PRK13539 cytochrome c biogenes 90.9 0.15 3.2E-06 52.0 2.5 26 603-628 28-53 (207)
474 cd03237 ABC_RNaseL_inhibitor_d 90.9 0.16 3.5E-06 53.4 2.8 26 603-628 25-50 (246)
475 PRK13538 cytochrome c biogenes 90.9 0.14 3.1E-06 51.9 2.4 26 603-628 27-52 (204)
476 PF13476 AAA_23: AAA domain; P 90.9 0.2 4.4E-06 49.6 3.4 26 603-628 19-44 (202)
477 PRK14241 phosphate transporter 90.9 0.15 3.3E-06 53.6 2.7 27 602-628 29-55 (258)
478 PRK14274 phosphate ABC transpo 90.9 0.17 3.6E-06 53.4 2.9 26 603-628 38-63 (259)
479 PRK14247 phosphate ABC transpo 90.9 0.15 3.2E-06 53.4 2.5 27 602-628 28-54 (250)
480 PRK14250 phosphate ABC transpo 90.9 0.14 3.1E-06 53.3 2.4 27 602-628 28-54 (241)
481 cd01867 Rab8_Rab10_Rab13_like 90.9 0.17 3.7E-06 49.1 2.8 22 605-626 5-26 (167)
482 PRK11264 putative amino-acid A 90.9 0.15 3.2E-06 53.3 2.5 27 602-628 28-54 (250)
483 cd03234 ABCG_White The White s 90.9 0.14 3.1E-06 52.7 2.4 27 602-628 32-58 (226)
484 cd04114 Rab30 Rab30 subfamily. 90.9 0.17 3.8E-06 48.7 2.8 23 604-626 8-30 (169)
485 cd03298 ABC_ThiQ_thiamine_tran 90.8 0.15 3.2E-06 51.9 2.4 27 602-628 23-49 (211)
486 KOG0482|consensus 90.8 1.4 2.9E-05 50.6 9.9 135 421-566 439-620 (721)
487 TIGR01189 ccmA heme ABC export 90.8 0.17 3.6E-06 51.1 2.7 27 602-628 25-51 (198)
488 cd04156 ARLTS1 ARLTS1 subfamil 90.8 0.16 3.6E-06 48.5 2.5 21 606-626 2-22 (160)
489 TIGR02324 CP_lyasePhnL phospho 90.8 0.18 3.9E-06 51.8 3.0 27 602-628 33-59 (224)
490 PRK10744 pstB phosphate transp 90.8 0.16 3.4E-06 53.7 2.6 26 602-627 38-63 (260)
491 PLN02165 adenylate isopentenyl 90.8 0.17 3.7E-06 55.5 2.9 24 605-628 45-68 (334)
492 PRK00098 GTPase RsgA; Reviewed 90.8 0.22 4.8E-06 54.0 3.8 34 593-627 155-188 (298)
493 cd01861 Rab6 Rab6 subfamily. 90.8 0.17 3.7E-06 48.3 2.6 22 605-626 2-23 (161)
494 PTZ00112 origin recognition co 90.8 0.59 1.3E-05 57.1 7.5 79 606-689 784-876 (1164)
495 KOG2749|consensus 90.7 0.3 6.5E-06 53.5 4.6 39 603-641 103-141 (415)
496 cd01864 Rab19 Rab19 subfamily. 90.7 0.17 3.7E-06 48.9 2.6 23 604-626 4-26 (165)
497 PRK12288 GTPase RsgA; Reviewed 90.7 0.23 4.9E-06 55.1 3.9 33 593-626 196-228 (347)
498 PRK10867 signal recognition pa 90.7 0.28 6E-06 56.0 4.6 40 603-642 100-140 (433)
499 PRK08058 DNA polymerase III su 90.7 0.26 5.6E-06 54.2 4.3 28 601-628 26-53 (329)
500 PRK10771 thiQ thiamine transpo 90.7 0.16 3.5E-06 52.5 2.6 27 602-628 24-50 (232)
No 1
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=100.00 E-value=7.3e-66 Score=530.98 Aligned_cols=202 Identities=62% Similarity=1.004 Sum_probs=164.8
Q ss_pred ccccccCCCCCceeccchhHHHHHHHHHHHcccCCCCC-----------------------------CCCHHHHHHHHHH
Q psy17620 367 YGYEYMGLNGRLVITPLTDRIYLTITQALSMRLGAAPA-----------------------------GMDFLAFGKILSG 417 (741)
Q Consensus 367 YgyEYlG~~~rLViTPLTdRc~~tl~~Al~~~~GGap~-----------------------------~~d~~~~~ri~~G 417 (741)
|||||+|+++|||+||||||||++|++|+++++||+|. ++|+++|+||++|
T Consensus 1 YgyEY~G~~~rlv~Tplt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G 80 (231)
T PF12774_consen 1 YGYEYLGNSPRLVITPLTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKG 80 (231)
T ss_dssp -------S-------HHHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHH
T ss_pred CCccccCCCCCceechHHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999854 6999999999999
Q ss_pred hhhcCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccCCCCCCCCchHHHhhcce
Q psy17620 418 LSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFR 497 (741)
Q Consensus 418 laq~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNpgy~gr~eLP~nLk~lFR 497 (741)
++++|||+||||||||+.+|||++++||++|++|++++.+++.++|++|+++|++++|+||||||+||++||+|||++||
T Consensus 81 ~~~~GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFR 160 (231)
T PF12774_consen 81 LAQSGAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFR 160 (231)
T ss_dssp HHHHT-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEE
T ss_pred HhhcCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhhcCCccccchhhHHHHHHHhhHhHhhhc
Q psy17620 498 PVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAAL 568 (741)
Q Consensus 498 pvam~~PD~~~I~ei~L~s~GF~~a~~La~Kl~~l~~l~~e~ls~q~hydfgLRalksVL~~a~~l~~~~~ 568 (741)
||+|++||+++|+|++|++.||.+|+.||+|++.+|++|++++|+|+|||||||++|+||..|+++||+.|
T Consensus 161 pvam~~PD~~~I~ei~L~s~GF~~a~~La~kl~~l~~l~~~~lS~q~hydfgLRalk~vl~~a~~~kr~~p 231 (231)
T PF12774_consen 161 PVAMMVPDLSLIAEILLLSQGFKDAKSLAKKLVSLFQLCKEQLSKQDHYDFGLRALKSVLRMAGSLKRGDP 231 (231)
T ss_dssp EEE--S--HHHHHHHHHHCCCTSSHHHHHHHHHHHHHHHHHCS-SSTT---SHHHHHHHHHHHHHHHT---
T ss_pred eeEEeCCCHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHHHHhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875
No 2
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=99.97 E-value=1.7e-30 Score=302.66 Aligned_cols=485 Identities=11% Similarity=0.015 Sum_probs=352.5
Q ss_pred hHHHHHHHHhcchhhhhccchhhhhhcccchhhhhhhhhhhccccccccchhhhHHHHHHhhhcCccchhhcccccHHHH
Q psy17620 175 ARDIIDNFVRDGSAVRGELTKNDRKKFNTVLIVDVHAREIKDNFIGSNSLSRSLESVIMWETHKNPRVIEQCLVPNRLEH 254 (741)
Q Consensus 175 ~r~vye~~~~~~~~~~~~~~~~e~~~f~~~~~v~~~w~~~~~~f~~~~~~~~~~~~~im~~~~~~~~v~~~~~~~~~~~~ 254 (741)
+++.=+..+--+..|+.-.+|+++.||+. +-+.+-| |-+++..--.++.....|+.-.
T Consensus 625 ~~~ld~y~~~~~~~dl~~~ip~~~~~~~s----------l~s~~~~-----------i~~r~~~~~~~i~~i~~~~~d~- 682 (3164)
T COG5245 625 LRRLDEYLMMMSLEDLMPLIPHAVHRKMS----------LVSGVRG-----------IYKRVVSGCEAINTILEDVGDD- 682 (3164)
T ss_pred HHHHHHHHHHhhhhhhcccccHHHHHHHH----------HHhhhhh-----------hhhhhhcccchhheeeccCCch-
Confidence 34443444444456899999999999987 3333333 6677777777777888887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCcccccCcHHHHHHhcC-CCchhhhhhHHHHhhhcC----------Cc------
Q psy17620 255 LEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGS-SSPTAIQEHIVKFAAKIM----------DA------ 317 (741)
Q Consensus 255 L~~~~~~L~~i~k~L~~yLe~kR~~FPRFyFLsn~dLL~ils~-~~~~~i~~hl~k~f~~I~----------~~------ 317 (741)
|.-.-++|+.|..|++.+|+.+|..||| |++++||++++++ .+...+-++++|+|.++. ..
T Consensus 683 l~l~~~~~~~v~~si~~~l~~~~r~~~r--~~~~~~l~~~v~~~~~~~~~~~f~~k~~~~~e~~~~~~~~i~~~~~~~~~ 760 (3164)
T COG5245 683 LDLFYKEMDQVFMSIEKVLGLRWREVER--ASEVEELMDRVRELENRVYSYRFFVKKIAKEEMKTVFSSRIQKKEPFSLD 760 (3164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh--hcchHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHhccCCCccch
Confidence 8889999999999999999999999999 8999999999998 577788888888764220 00
Q ss_pred --------------C------------------------------------------------hHHHHHH----hhhhhc
Q psy17620 318 --------------E------------------------------------------------EFQWESQ----LRYYWK 331 (741)
Q Consensus 318 --------------~------------------------------------------------~f~W~~q----LRyy~~ 331 (741)
. .-.|.+. +--||.
T Consensus 761 ~~~~~~~~~l~~~~~~~~~in~s~~~v~sq~~~~~~~~~~~~d~~~~vs~~~~~~~~l~~~~~~~~~e~c~~~~~s~y~~ 840 (3164)
T COG5245 761 SEAYVGFFRLYEKSIVIRGINRSMGRVLSQYLESVQEALEIEDGSFFVSRHRVRDGGLEKGRGCDAWENCFDPPLSEYFR 840 (3164)
T ss_pred HHhhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcceEEEeeeehhhcccccccchHHHHHhcCchHHHHHH
Confidence 0 0123332 223442
Q ss_pred ccccCcc-------Cce----------------EEEEecc--ccc-----c-----cccc---c--cccccccccccccc
Q psy17620 332 KSYLDWK-------DSL----------------VIIQCSG--SFE-----Y-----GYEH---E--YMGLNGSFEYGYEY 371 (741)
Q Consensus 332 ~~~~~~~-------~~~----------------~i~~~~~--~~~-----~-----~~~~---~--~~~l~~~~~YgyEY 371 (741)
.-..-.+ |++ +|+|... +++ | .++. . ....+....|-|||
T Consensus 841 ~~~~~~~~~~~~~~d~v~k~l~~~~~~~~~~~~ii~~~~~~~~~~~~~l~~~~i~~~~q~l~~~~~~~~s~y~~~~~f~~ 920 (3164)
T COG5245 841 ILEKIFPSEEGYFFDEVLKRLDPGHEIKSRIEEIIRMVTVKYDFCLEVLGSVSISELPQGLYKRFIKVRSSYRSAEMFAK 920 (3164)
T ss_pred HHHHhcccccccchHHHHHhcCchhhHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhheEeechhhHHHHHHHh
Confidence 1000000 000 0111111 000 0 0000 0 12335556799999
Q ss_pred cCCCCCceeccchhHHHHHHHHHHHcccC---CC--C--------------CCCCHHHHHHHHHHhhhcCcceeeccccc
Q psy17620 372 MGLNGRLVITPLTDRIYLTITQALSMRLG---AA--P--------------AGMDFLAFGKILSGLSQCGAWGCFDEFNR 432 (741)
Q Consensus 372 lG~~~rLViTPLTdRc~~tl~~Al~~~~G---Ga--p--------------~~~d~~~~~ri~~Glaq~GaW~cfDEfnr 432 (741)
.|.+.+++.||+----+.+|+.|++...+ |. . .|+||+ +||..|..+-|+|| ||||||
T Consensus 921 ~~ip~~~~~~~~~~~~~~~l~~a~~~~~c~f~~t~~s~~~~~~~~~~gri~d~~~~~--sri~~g~~~~~~~g-~~e~~~ 997 (3164)
T COG5245 921 NTIPFFVFEHSMDTSQHQKLFEAVCDEVCRFVDTENSRVYGMLVAGKGRIYDGTEPR--SRIEAGPICEEERG-TEESAL 997 (3164)
T ss_pred cCCChhheechhhhhhHHHHHHHHHHHHheecCCCCceeHHHHhcCCCeeecCCChh--hhhhccceehhhcc-chhHHH
Confidence 99999999999999999999999998653 11 1 178888 89999999999999 999999
Q ss_pred CChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccCCCCCCCCchHHHhhcceeeeccCCCHHHHHHH
Q psy17620 433 IDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQI 512 (741)
Q Consensus 433 l~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNpgy~gr~eLP~nLk~lFRpvam~~PD~~~I~ei 512 (741)
+++-++ .|+..++.+++.++-..+....--++-++.|++++|+|+|| |.++|+|+|..||.+.|..| ...|++.
T Consensus 998 lde~~~-~i~~~~~~~~~~~~~~~~~~s~~~e~~~~sp~t~v~~~in~----r~~~~e~~~~a~~~f~~~~p-~g~i~~~ 1071 (3164)
T COG5245 998 LDEISR-TILVDEYLNSDEFRMLEELNSAVVEHGLKSPSTPVEMIINE----RNIVLEIGRRALDMFLSNIP-FGAIKSR 1071 (3164)
T ss_pred HHHHHH-HHhhhHHhcchHHHHHHHHHHHHHHcCCCCCCCceEEEecc----hhhHHHHHHHHHHHHHhcCC-chhHHHH
Confidence 999999 77777888888888776655544445577899999999999 89999999999999999999 8889887
Q ss_pred HHhhcCccchHHHHHHHHHHHHHHHHHhhcCCccccchhhHHHHHHHhhHhHhhhccchHHHHHHHHHHhccCCCc----
Q psy17620 513 MLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKF---- 588 (741)
Q Consensus 513 ~L~s~GF~~a~~La~Kl~~l~~l~~e~ls~q~hydfgLRalksVL~~a~~l~~~~~~~~E~~~l~ral~~~~lPkl---- 588 (741)
. ++|+++|..|.++.+...+..+||-| |.++.+|+.+..+.....+. |..+ +. ..-+|-+
T Consensus 1072 ~---------~sl~~~i~~f~~~~~~~~~~~~~~~f--~~~~~~l~~~~~~l~e~~e~-~~~i-~~---~~~lp~i~dtl 1135 (3164)
T COG5245 1072 R---------ESLDREIGAFNNEVDGIAREEDELMF--YPMFKSLKAKHRMLEEKTEY-LNKI-LS---ITGLPLISDTL 1135 (3164)
T ss_pred H---------HHHHHHHHHHHHHhhhhhcccchhhh--HHHHHHHhhcchHHHHhhHH-HHHH-HH---HhCCCchhHHH
Confidence 3 89999999999999999999999998 99999999988776543211 1111 10 0112211
Q ss_pred --------------------------------chhhHHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620 589 --------------------------------VSEDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPART 636 (741)
Q Consensus 589 --------------------------------~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~ 636 (741)
.....+.+|.+..+...-+++|..|+||+.-|+..+..+.. ....
T Consensus 1136 ~e~~~~~da~~~~~~~~s~~~~~~~s~q~sg~~~a~f~~f~~~~~t~~~~~~~~~~~~~k~~~~~~~~d~~~h---~~~~ 1212 (3164)
T COG5245 1136 RERIDTLDAEWDSFCRISESLKKYESQQVSGLDVAQFVSFLRSVDTGAFHAEYFRVFLCKIKHYTDACDYLWH---VKSP 1212 (3164)
T ss_pred HHHHHHHhhcCCchhHHHHHHHHHhhccccCccHHHHHHHHHHhhhcHHHHHHHHHhhcccchhhhhhccccc---cCch
Confidence 11113446777788888899999999999999997764321 1122
Q ss_pred EEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCCeEEEEcCCCChhhhhhccccccCCceeeccCCC
Q psy17620 637 YTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGE 716 (741)
Q Consensus 637 ~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfDG~vd~~wiE~LNsvLDdnk~L~L~nGe 716 (741)
+++. + ++ .++-||. |+|.++.|+--.. .-++.+-|.+||. ++|.+|+++||||++++|+||
T Consensus 1213 yv~~-------~---~~-~a~~e~r-~~f~~~~r~d~~~--~~~~s~~~~~~~~-----yve~~~a~~~~~kl~~~~~ge 1273 (3164)
T COG5245 1213 YVKK-------K---YF-DADMELR-QFFLMFNREDMEA--RLADSKMEYEVER-----YVEKTKAEVSSLKLELSSVGE 1273 (3164)
T ss_pred hhHH-------H---Hh-hhhHHHH-HHHHHHhHHhhhh--hhccceEEEehHH-----HHHHHHhhhccceeeeccCCC
Confidence 2222 2 33 3578999 9999999953221 1246789999997 899999999999999999999
Q ss_pred eeecCCCceEEEEeCCCCCCCCCC
Q psy17620 717 RIRLLAHCQLLFEIHPIQSDSHPR 740 (741)
Q Consensus 717 ri~l~~~~rliFE~~~L~~aSPAt 740 (741)
+ +++|| +|. .+|||
T Consensus 1274 ~-------~v~~~--nl~-s~~~~ 1287 (3164)
T COG5245 1274 G-------QVVVS--NLG-SIGDK 1287 (3164)
T ss_pred c-------eEEEe--eCC-Cccch
Confidence 8 89998 887 77775
No 3
>PF08393 DHC_N2: Dynein heavy chain, N-terminal region 2; InterPro: IPR013602 Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. Dyneins generally contain one to three heavy chains, where each heavy chain consists of a C-terminal globular head, a flexible microtubule-binding stalk, and a flexible N-terminal tail known as the cargo-binding domain []. The two categories of dyneins are the axonemal dyneins, which produce the bending motions that propagate along cilia and flagella, and the cytosolic dyneins, which drive a variety of fundamental cellular processes including nuclear migration, organisation of the mitotic spindle, chromosome separation during mitosis, and the positioning and function of many intracellular organelles. Cytoplasmic dyneins contain several accessory subunits ranging from light to intermediate chains. This entry represents a region found C-terminal to the dynein heavy chain N-terminal region 1 (IPR013594 from INTERPRO) in many members of this family. No functions seem to have been attributed specifically to this region. ; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.90 E-value=2.1e-24 Score=241.34 Aligned_cols=141 Identities=36% Similarity=0.555 Sum_probs=127.2
Q ss_pred hhhccccccccceEE-----EEccchHHHHHHHHhcchhhhhccchhhhhhcccchhhhhhhhhhhccccccccchhhhH
Q psy17620 155 GELTKNDRKKFNTVL-----IVDVHARDIIDNFVRDGSAVRGELTKNDRKKFNTVLIVDVHAREIKDNFIGSNSLSRSLE 229 (741)
Q Consensus 155 ~Qlr~yw~~~~~~~~-----~idv~~r~vye~~~~~~~~~~~~~~~~e~~~f~~~~~v~~~w~~~~~~f~~~~~~~~~~~ 229 (741)
++--..|..++..+. |.++|.+|+|.+.+|.++ +++.++|.|+++|+. |++.|+.
T Consensus 203 ~~~v~~w~~~L~~~~~il~~w~~~Q~~W~yL~~if~~~-di~~~lp~e~~~F~~---i~~~~~~---------------- 262 (408)
T PF08393_consen 203 RDEVEEWEKKLNNIQEILEEWMEVQRKWMYLEPIFSSS-DIKKQLPKEAKKFSS---IDKEWRS---------------- 262 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CHCCCTHHHHHHHHH---HHHHHHH----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHH---cChHHHH----------------
Confidence 444555665665443 779999999999999887 999999999999999 9999999
Q ss_pred HHHHHhhhcCccchhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccCcHHHHHHhcC-CCchhhhhhHH
Q psy17620 230 SVIMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGS-SSPTAIQEHIV 308 (741)
Q Consensus 230 ~~im~~~~~~~~v~~~~~~~~~~~~L~~~~~~L~~i~k~L~~yLe~kR~~FPRFyFLsn~dLL~ils~-~~~~~i~~hl~ 308 (741)
+|.++.++|+|+++|..+++.+.|+.+++.|+.|+|+|++|||+||..|||||||||+|||+|||+ +||..+++|++
T Consensus 263 --i~~~~~~~~~v~~~~~~~~~~~~l~~~~~~l~~i~k~L~~~Le~kR~~FPRfyFlsd~eLl~ils~~~~~~~i~~~l~ 340 (408)
T PF08393_consen 263 --IMKRAQKDPNVLSVCSNPDLLEKLESINESLEKIQKSLNDYLESKREAFPRFYFLSDDELLEILSQSKDPEQIQPHLK 340 (408)
T ss_dssp --HHHHHHCT-CCHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHC-HHHHHHHHHTTTTCHHHHHHHH
T ss_pred --HHHHHHhCcchhHHhhHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccceeecCcHHHHHHHHcCCChHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 59999999999
Q ss_pred HHhhhcCCc
Q psy17620 309 KFAAKIMDA 317 (741)
Q Consensus 309 k~f~~I~~~ 317 (741)
|||++|.+.
T Consensus 341 k~F~~i~~l 349 (408)
T PF08393_consen 341 KCFPGIKSL 349 (408)
T ss_dssp HCCSSEEEE
T ss_pred HHHHHHHHH
Confidence 999988644
No 4
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.83 E-value=1.2e-19 Score=213.51 Aligned_cols=299 Identities=22% Similarity=0.302 Sum_probs=210.3
Q ss_pred HHHHHHHHHHhhhcCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCce-eEee-c--ceEEecCCceEEEeccC-CC
Q psy17620 408 FLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATR-FQFE-G--HDIIMNNKVGIFITMNP-GY 482 (741)
Q Consensus 408 ~~~~~ri~~Glaq~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~-~~~~-g--~~i~l~~~~~iFiTmNp-gy 482 (741)
|..+..++.-+..+|-|+.+||+|..+.+.|..|++.+.. .... +..| | +.|..||+|.+|.+||| +.
T Consensus 622 F~fveG~Lvk~~r~GeWlLLDEINLas~eTLe~I~~lL~~-------~es~ilLsE~GD~~Pi~~Hp~FrlFgCMNP~tD 694 (4600)
T COG5271 622 FVFVEGILVKCMRNGEWLLLDEINLASEETLELIDGLLGK-------KESGILLSESGDLRPIRIHPGFRLFGCMNPGTD 694 (4600)
T ss_pred EEEehhhHHHHHhcCceEEeeccccccHHHHHHHHhhhcC-------cccceeeeccCCccccccCCCceEEeecCCCcc
Confidence 3344456777888999999999999999999988765543 2222 3333 3 57899999999999999 56
Q ss_pred CCCCCchHHHhhcceeeeccCCCH-----HHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhh---------cCCcccc
Q psy17620 483 AGRTELPESVKALFRPVVCIVPDF-----ELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLS---------KQCHYDF 548 (741)
Q Consensus 483 ~gr~eLP~nLk~lFRpvam~~PD~-----~~I~ei~L~s~GF~~a~~La~Kl~~l~~l~~e~ls---------~q~hydf 548 (741)
.|+.+||..+|+.|..|.+..|+. -.|+.-++-+... .-...++++..+|..++..-- ..+||
T Consensus 695 vGKr~le~~~rsrFteIyVhsp~~~l~DllsII~kyig~y~I-s~E~v~~~IaElyleaKslsl~~~lvdga~q~Ph~-- 771 (4600)
T COG5271 695 VGKRKLEGSFRSRFTEIYVHSPSTSLKDLLSIIHKYIGRYEI-SEERVSRKIAELYLEAKSLSLGKELVDGAVQEPHV-- 771 (4600)
T ss_pred cccccCCcccccceeEEEEeCccccHHHHHHHHHHHHhheec-chHHHhHHHHHHHHHHHHhccCCeeccCcCCCccc--
Confidence 799999999999999999999954 3455554433333 235567899999988875421 22565
Q ss_pred chhhHHHHHHHhhHh------Hhh-hc----------c-chHHHHHHHHHHhc-------------cCCCcchhh-----
Q psy17620 549 GMRALKSVLVMAGEL------KRA-AL----------Q-LEESVVLMRALRDM-------------NLPKFVSED----- 592 (741)
Q Consensus 549 gLRalksVL~~a~~l------~~~-~~----------~-~~E~~~l~ral~~~-------------~lPkl~~~D----- 592 (741)
..|++-.+|.+..+. +|. +. + .+|. ++..-+..+ ..||-...|
T Consensus 772 s~RTL~RtL~yVt~i~~iyglrrSlYegFcmsflTlLD~~Ses-il~~~~~kftlg~l~~~~ai~kq~p~~p~~~yi~f~ 850 (4600)
T COG5271 772 SGRTLVRTLNYVTNIGEIYGLRRSLYEGFCMSFLTLLDFVSES-ILVSLLSKFTLGLLESQNAIEKQKPKVPDHSYIAFC 850 (4600)
T ss_pred chHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHhcccccchhhhhcCCCCCCccHHHHH
Confidence 567766666554322 111 00 0 1121 121111111 134332222
Q ss_pred --------------------------HH-HHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc
Q psy17620 593 --------------------------VV-QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS 645 (741)
Q Consensus 593 --------------------------v~-qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t 645 (741)
.+ -.-.+...+.+++|.||+.||||+++..|++.... -.+.+-|+....
T Consensus 851 hyw~~~g~~~veeq~hyIiTPfVqkn~ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~tgh----kfVRINNHEHTd 926 (4600)
T COG5271 851 HYWKHGGSFPVEEQEHYIITPFVQKNYLNTMRAASLSNFPLLIQGPTSSGKTSMILYLARETGH----KFVRINNHEHTD 926 (4600)
T ss_pred HHHHhcCCCchhhcceeEecHHHHHHHHHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHhCc----cEEEecCcccch
Confidence 11 12344456789999999999999999999998642 234455677777
Q ss_pred cccccccccCC---CCCcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeec
Q psy17620 646 VIELYGVLNPE---TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRL 720 (741)
Q Consensus 646 ~~eLyG~~d~~---t~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l 720 (741)
.+|+.|.|-.+ +-++++|++.-++| ...|||+| .-+.....|.||.+||||+.|.+|..+.+..
T Consensus 927 lqeYiGTyvTdd~G~lsFkEGvLVeAlR-----------~GyWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~ 995 (4600)
T COG5271 927 LQEYIGTYVTDDDGSLSFKEGVLVEALR-----------RGYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVV 995 (4600)
T ss_pred HHHHhhceeecCCCceeeehhHHHHHHh-----------cCcEEEeeccccCcHHHHHHHHHhhccccceecCCcceeec
Confidence 89999998322 24799999999999 34899999 5567789999999999999999998888888
Q ss_pred CCCceEEEEeCC
Q psy17620 721 LAHCQLLFEIHP 732 (741)
Q Consensus 721 ~~~~rliFE~~~ 732 (741)
|+.-.++|-|++
T Consensus 996 PHp~F~lFATQN 1007 (4600)
T COG5271 996 PHPNFRLFATQN 1007 (4600)
T ss_pred cCCCeeEEeecC
Confidence 888888999887
No 5
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.75 E-value=3e-17 Score=193.96 Aligned_cols=279 Identities=23% Similarity=0.385 Sum_probs=197.7
Q ss_pred HhhhcCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEe-e-c---ceEEecCCceEEEeccC-CCCCCCCchH
Q psy17620 417 GLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQF-E-G---HDIIMNNKVGIFITMNP-GYAGRTELPE 490 (741)
Q Consensus 417 Glaq~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~-~-g---~~i~l~~~~~iFiTmNp-gy~gr~eLP~ 490 (741)
-+..+|-...+||++..+.+||..+-+-+. ...+..+ | | .++..+.+|++|+|||| |.-|+.||.+
T Consensus 1289 ~AMk~GdfFLlDEIsLAdDSVLERLNSVLE--------~~RtL~l~E~g~a~~~vtA~dgF~ffATMNPGGDyGKkELSP 1360 (4600)
T COG5271 1289 KAMKCGDFFLLDEISLADDSVLERLNSVLE--------SQRTLYLTETGNAAEEVTAHDGFRFFATMNPGGDYGKKELSP 1360 (4600)
T ss_pred HHHhcCCeeEeeeccccchHHHHHHHHhhc--------ccceEEEeecCCccceeeeccCceEEEeeCCCCccchhhCCH
Confidence 467899999999999999999988743333 2233333 2 4 67889999999999999 4558999999
Q ss_pred HHhhcceeeeccC----CCHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhhcCCccc--cchhhHHHHHHHhhHhH
Q psy17620 491 SVKALFRPVVCIV----PDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYD--FGMRALKSVLVMAGELK 564 (741)
Q Consensus 491 nLk~lFRpvam~~----PD~~~I~ei~L~s~GF~~a~~La~Kl~~l~~l~~e~ls~q~hyd--fgLRalksVL~~a~~l~ 564 (741)
.||..|..+.+.+ -|.-.|+++-|. | +-..||++++.+++-....+ -|. .++|.+.++.....+.+
T Consensus 1361 ALRNRFTEiwvp~m~D~~d~~~iv~~~l~---~-~~vdla~p~ve~~kw~a~~l----~~~~vISiRd~l~~VEFIn~~~ 1432 (4600)
T COG5271 1361 ALRNRFTEIWVPVMSDEADLIFIVLVDLR---F-GEVDLAKPSVETFKWLARSL----LYNDVISIRDLLLIVEFINRRE 1432 (4600)
T ss_pred HHhcccceEeecccccccchhhhhhhhhh---c-CcccccchHHHHHHHHHHHh----hccCceeHHHHHHHHHHHHHHH
Confidence 9999999998752 245555555543 3 35779999999988443322 233 45565544433222111
Q ss_pred hhhc----------------------cc--------hHHH---HHHHHHH------------------------hccCCC
Q psy17620 565 RAAL----------------------QL--------EESV---VLMRALR------------------------DMNLPK 587 (741)
Q Consensus 565 ~~~~----------------------~~--------~E~~---~l~ral~------------------------~~~lPk 587 (741)
-.+. .. +|.. +=+.++. ++-+|.
T Consensus 1433 i~d~~~~l~~~~smvfidalG~fst~~laen~~dl~s~r~~c~v~l~~L~g~~i~~~~~~~n~i~f~d~~~f~g~f~iP~ 1512 (4600)
T COG5271 1433 ILDLNLVLFNAVSMVFIDALGEFSTVALAENGLDLESERQRCFVWLEALEGAGIKGIEADVNAIYFEDERMFGGDFVIPY 1512 (4600)
T ss_pred hhhhhhHhhhhhhHHHHHHhcccchhHHhhcccchhHHHHHHHHHHHHhccCCceeeecccceeEecccceecccccccc
Confidence 0000 00 1111 1122221 123454
Q ss_pred cchhh---------------HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc-cccccc
Q psy17620 588 FVSED---------------VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYG 651 (741)
Q Consensus 588 l~~~D---------------v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t-~~eLyG 651 (741)
++... +..+.++|+++.+++|.|.||.|||+++..||+..+ .++.+||-.-.| ..+|||
T Consensus 1513 ~~~~~S~Ssf~l~spTT~~Nl~rVlRAmqv~kpilLEGsPGVGKTSlItaLAr~tG-----~kliRINLSeQTdL~DLfG 1587 (4600)
T COG5271 1513 LVEHHSSSSFDLESPTTTVNLRRVLRAMQVGKPILLEGSPGVGKTSLITALARKTG-----KKLIRINLSEQTDLCDLFG 1587 (4600)
T ss_pred ccccccCccccccCCchHHhHHHHHHHHhcCCceeecCCCCccHHHHHHHHHHHhc-----CceEEeeccccchHHHHhC
Confidence 43221 567889999999999999999999999999999864 467788876654 589999
Q ss_pred cccCCC--C--CcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCC-eeecCCCc
Q psy17620 652 VLNPET--R--DWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGE-RIRLLAHC 724 (741)
Q Consensus 652 ~~d~~t--~--eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGe-ri~l~~~~ 724 (741)
+.-|.. + -|.|..|-++|| +..|+++| .-+..+.+|.||++||..+...+|.-+ .+..+|++
T Consensus 1588 sd~Pve~~Gef~w~dapfL~amr-----------~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~Hpnf 1656 (4600)
T COG5271 1588 SDLPVEEGGEFRWMDAPFLHAMR-----------DGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNF 1656 (4600)
T ss_pred CCCCcccCceeEecccHHHHHhh-----------cCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCe
Confidence 998875 3 399999999998 45899999 667889999999999999999999765 46678887
Q ss_pred eEE
Q psy17620 725 QLL 727 (741)
Q Consensus 725 rli 727 (741)
|++
T Consensus 1657 rVF 1659 (4600)
T COG5271 1657 RVF 1659 (4600)
T ss_pred eee
Confidence 764
No 6
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=99.75 E-value=8.4e-19 Score=206.36 Aligned_cols=326 Identities=25% Similarity=0.447 Sum_probs=224.9
Q ss_pred cccccccccCCCCCceec-cchhH--HHHHHHHHHHc----ccCCC--C-C--C-------------------CCHHHHH
Q psy17620 364 SFEYGYEYMGLNGRLVIT-PLTDR--IYLTITQALSM----RLGAA--P-A--G-------------------MDFLAFG 412 (741)
Q Consensus 364 ~~~YgyEYlG~~~rLViT-PLTdR--c~~tl~~Al~~----~~GGa--p-~--~-------------------~d~~~~~ 412 (741)
.+|||+||. .+.-+|.+ ||.+| .+.++.-.... ++.|| | . | ..-+++.
T Consensus 1573 nLp~~~~y~-~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~v~vf~~ype~~SL~ 1651 (3164)
T COG5245 1573 NLPYGFEYY-PPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKPVFVFCCYPELASLR 1651 (3164)
T ss_pred CCccccccC-CCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCceEEEecCcchhhHH
Confidence 389999995 44666777 99998 55554444332 12232 2 1 1 2247889
Q ss_pred HHHHHhhhcCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccCCCCCCCCchHHH
Q psy17620 413 KILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESV 492 (741)
Q Consensus 413 ri~~Glaq~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNpgy~gr~eLP~nL 492 (741)
+|+- +.--|+..||||||++..+..++-...++... .++..|.+||-+|.+| |||..|
T Consensus 1652 ~Iye-a~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k--------------------~~~k~~lq~~y~y~pR-eLtR~l 1709 (3164)
T COG5245 1652 NIYE-AVLMGSYLCFDEFNRLSEETMSASVELYLSSK--------------------DKTKFFLQMNYGYKPR-ELTRSL 1709 (3164)
T ss_pred HHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--------------------HhhhhhcccccccChH-HHHHHH
Confidence 9998 77789999999999999999998766666543 3567789999999999 999999
Q ss_pred hhcce--eeeccCCCHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhhcCCccccchhhHHHHHH-HhhH--hHhh-
Q psy17620 493 KALFR--PVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLV-MAGE--LKRA- 566 (741)
Q Consensus 493 k~lFR--pvam~~PD~~~I~ei~L~s~GF~~a~~La~Kl~~l~~l~~e~ls~q~hydfgLRalksVL~-~a~~--l~~~- 566 (741)
++.|- .-....||..+|.--..- ..+.++.+++.-- ...-+.|.||+||+|++..... ..++ +...
T Consensus 1710 r~i~~yaeT~~~t~~~slI~~wy~e-----a~r~~~dRLV~qk---E~st~~q~ly~~~~~~~~e~~~g~i~e~~I~fS~ 1781 (3164)
T COG5245 1710 RAIFGYAETRIDTPDVSLIIDWYCE-----AIREKIDRLVQQK---ESSTSRQDLYDFGLRAIREMIAGHIGEAEITFSM 1781 (3164)
T ss_pred HHHHhHHhcCCCCCcHHHHHHHHHH-----HHHHHHHHHHHHH---hcchHHHHHHHHHHHhhhhhhhcccchhhhhHHH
Confidence 99998 667788999988754321 2455555555432 2234578999999999874322 1111 0000
Q ss_pred -------hccchHHHHHHHHHHh------ccCCCcchhh----HHHHHHHhhc-cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 567 -------ALQLEESVVLMRALRD------MNLPKFVSED----VVQMYETMLT-RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 567 -------~~~~~E~~~l~ral~~------~~lPkl~~~D----v~qL~e~l~~-r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
......-...+...+. .+.|-...+| ++...+.+.+ ..-.|+.|..+.||+.+.+..+
T Consensus 1782 Il~~g~~~l~k~dl~~fvEe~~K~F~sshl~v~~V~~~~~l~HiLr~~R~l~~vggh~~l~g~~~~g~~~~~efvc---- 1857 (3164)
T COG5245 1782 ILFFGMACLLKKDLAVFVEEVRKIFGSSHLDVEAVAYKDALLHILRSRRGLLVVGGHGVLKGVLIRGACDAREFVC---- 1857 (3164)
T ss_pred HHhccHHHHhhhhHHHHHHHHHHHhcccCCCCceeeeHHHHHHHHHHHHHHHHhccchhhhhhhhhhhHHHHHHHH----
Confidence 0001111122222222 2233333344 3344444433 2223455666666665555543
Q ss_pred cCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCCeEEEEcC-CCChhhhhhccccccCC
Q psy17620 629 VLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDG-DVDALWIENMNSVMDDN 707 (741)
Q Consensus 629 ~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfDG-~vd~~wiE~LNsvLDdn 707 (741)
.+|| .++-|++|.-|..+.+|.|-+...++|..-.. ....|+|+|| |+.+.|+|.||++||.|
T Consensus 1858 ---------wlN~--~~m~e~~~hr~~~~~Df~d~lk~~~~~~~~~~-----~r~Cl~I~Esi~~es~fLe~~N~LL~n~ 1921 (3164)
T COG5245 1858 ---------WLNP--RNMREIFGHRDELTGDFRDSLKVQDLRRNIHG-----GRECLFIFESIPVESSFLEDFNPLLDNN 1921 (3164)
T ss_pred ---------HhCc--cchhhhhcccccchhhHHHHHHHHHHhccccC-----CceEEEEecCCccchHHHHHhhhhhhcc
Confidence 2344 45579999999999999999999998865322 3568999999 99999999999999999
Q ss_pred ceeeccCC-CeeecCCCceEEEEeCCCCCCCCCC
Q psy17620 708 KILTLANG-ERIRLLAHCQLLFEIHPIQSDSHPR 740 (741)
Q Consensus 708 k~L~L~nG-eri~l~~~~rliFE~~~L~~aSPAt 740 (741)
+.+||.+| |++.+|.|.|.+||.+.|..-||||
T Consensus 1922 ~~~~lf~gne~~~I~~nlr~~~es~~L~~dTe~t 1955 (3164)
T COG5245 1922 RFLCLFSGNERIRIPENLRFVFESTSLEKDTEAT 1955 (3164)
T ss_pred ccchhccchhHHHHHHHHHhhhhccccccCCHHH
Confidence 99999999 9999999999999999999999985
No 7
>KOG1808|consensus
Probab=99.46 E-value=2.5e-13 Score=169.16 Aligned_cols=299 Identities=21% Similarity=0.276 Sum_probs=196.5
Q ss_pred HHHHHHHHHHhhhcCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEee-c--ceEEecCCceEEEeccCCC-C
Q psy17620 408 FLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFE-G--HDIIMNNKVGIFITMNPGY-A 483 (741)
Q Consensus 408 ~~~~~ri~~Glaq~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~-g--~~i~l~~~~~iFiTmNpgy-~ 483 (741)
+......+.-+...|-|...||.|..+.+.|-.+++-+.. ..-+..+ | +.+..||++.+|..|||++ .
T Consensus 199 f~~~~g~~~~~~~~g~w~lldeinla~~~~l~~i~~vl~~--------~~i~l~e~~d~~~l~~hp~f~~f~cmnp~td~ 270 (1856)
T KOG1808|consen 199 FVFVPGALVETISNGEWLLLDEINLASAETLELISQVLGK--------CSILLSERGDYTPLKIHPNFRIFACMNPATDV 270 (1856)
T ss_pred hhhchhhHHHHHhccchhhhhhhccchHHHHHHHHHhccC--------ceeeccccccccccCCCcchhhhhccCccchh
Confidence 3444445556788999999999999999999998766554 1111112 1 3567899999999999955 5
Q ss_pred CCCCchHHHhhcceeeeccCCCHH--HHHHHHHhhcCccchHHHHHHHHHHHHHHHHHh----hcCCccccchhhHHHHH
Q psy17620 484 GRTELPESVKALFRPVVCIVPDFE--LICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQL----SKQCHYDFGMRALKSVL 557 (741)
Q Consensus 484 gr~eLP~nLk~lFRpvam~~PD~~--~I~ei~L~s~GF~~a~~La~Kl~~l~~l~~e~l----s~q~hydfgLRalksVL 557 (741)
|+..+|...+..|+..++..|... .++-+..... .-......+++.+|.-.+... -..+|| .+|.+...|
T Consensus 271 gK~~l~~~~r~~~te~~v~~~~~~~~~~l~~~~~~~--~i~~e~v~~~~e~~~~~k~~~~~dg~~~~~~--s~r~l~raL 346 (1856)
T KOG1808|consen 271 GKRDLKPGKRNRFTEFSVHTSLEDADLSLSVVDKYI--AISSEPVRNIVELYLSAKSLSLVDGNQRPLY--SIRTLCRAL 346 (1856)
T ss_pred hhhhcCcchhcceEEEEEechhhhhhhhhhhhcccc--ccchhhHHhHHHHhhhccccccccccccchh--hhhhHHHHH
Confidence 999999999999999999877432 2222222222 122233333555555443322 012333 566666665
Q ss_pred HHhhHhHhhh-------------c---cchHHHHH----HHHHH-hccCCCcc--------------hhh----------
Q psy17620 558 VMAGELKRAA-------------L---QLEESVVL----MRALR-DMNLPKFV--------------SED---------- 592 (741)
Q Consensus 558 ~~a~~l~~~~-------------~---~~~E~~~l----~ral~-~~~lPkl~--------------~~D---------- 592 (741)
+..-.-.... + +..+..++ .++.. -..+|+-. .++
T Consensus 347 ~~v~~~~~~~~~~slyE~~~~sflt~le~~s~~~~~~l~~~~~~~~~q~P~~~~~~~~~i~~gs~~~~~~~~~i~T~~vq 426 (1856)
T KOG1808|consen 347 RIVLDSLPAEVDRSLYEAFCMSFLTQLEGESHKRLVKLIQRALLITKQVPASPRFEGYWIPSGSELTSEATHYIITPRVQ 426 (1856)
T ss_pred HHHHHhhhhhhhcchHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcccCCCCcccceeecCCCCccccccceeeccHHHH
Confidence 5432211110 0 11111111 11111 11223211 111
Q ss_pred --HHHHHHHhhcc-ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccc-cccCCCC--CcccChHH
Q psy17620 593 --VVQMYETMLTR-HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYG-VLNPETR--DWYDGLLS 666 (741)
Q Consensus 593 --v~qL~e~l~~r-~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG-~~d~~t~--eW~DGvls 666 (741)
...+-.+...+ .+++|.||++||||++++-|+.+.+. -.+.+.|+...+..++.| ++...++ .|++|++.
T Consensus 427 ~~la~~~~a~~~~~~pillqG~tssGKtsii~~la~~~g~----~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV 502 (1856)
T KOG1808|consen 427 KNLADLARAISSGKFPILLQGPTSSGKTSIIKELARATGK----NIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLV 502 (1856)
T ss_pred HHHHHHHHHHhcCCCCeEEecCcCcCchhHHHHHHHHhcc----CceehhccccchHHHHHHhhhcCCCCCeeeehhHHH
Confidence 22233444443 69999999999999999999999752 234455677778899999 4444444 69999999
Q ss_pred HHHHHhcCCCCCCCCCCeEEEEcC--CCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCC
Q psy17620 667 NIFRAVNKPLDPGSKERKYILFDG--DVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPI 733 (741)
Q Consensus 667 ~i~R~~~~~~~~~~~~~~WIVfDG--~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L 733 (741)
.++| +..|+|||| -+....+|.||.++|||+.|.+|+|.|..-++...++|-|.+-
T Consensus 503 ~Alr-----------~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~ 560 (1856)
T KOG1808|consen 503 QALR-----------NGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNP 560 (1856)
T ss_pred HHHH-----------hCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccC
Confidence 9999 448999997 3567899999999999999999999999999999999977653
No 8
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.25 E-value=5.5e-12 Score=119.95 Aligned_cols=115 Identities=20% Similarity=0.358 Sum_probs=88.1
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccC--CCCCcccChHHHHHHHhcCCCCCCCCC
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNP--ETRDWYDGLLSNIFRAVNKPLDPGSKE 682 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~--~t~eW~DGvls~i~R~~~~~~~~~~~~ 682 (741)
+|+|+||||+|||++++.+++.+. .++... --+...+.++|+|.+++ ...+|.||.+...++ .
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~---~~~~~i-~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-----------~ 65 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG---RPVIRI-NCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-----------K 65 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT---CEEEEE-E-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-----------E
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh---cceEEE-Eeccccccccceeeeeeccccccccccccccccc-----------c
Confidence 589999999999999999999983 233333 33445777999999987 456899999998888 3
Q ss_pred CeEEEEcCC--CChhhhhhccccccCCceeeccCCCeeecCC------CceEEEEeCCCC
Q psy17620 683 RKYILFDGD--VDALWIENMNSVMDDNKILTLANGERIRLLA------HCQLLFEIHPIQ 734 (741)
Q Consensus 683 ~~WIVfDG~--vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~------~~rliFE~~~L~ 734 (741)
..|+++|+- +++..++.|+++||+++......++.+..++ ++++|+.+..-.
T Consensus 66 ~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~ 125 (139)
T PF07728_consen 66 GGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD 125 (139)
T ss_dssp EEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST
T ss_pred eeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC
Confidence 489999954 5799999999999998887777777787776 489999888766
No 9
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.98 E-value=2.9e-09 Score=115.07 Aligned_cols=125 Identities=22% Similarity=0.279 Sum_probs=95.7
Q ss_pred HHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccccccccccc----CC--CCCcccChHHH
Q psy17620 594 VQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLN----PE--TRDWYDGLLSN 667 (741)
Q Consensus 594 ~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d----~~--t~eW~DGvls~ 667 (741)
..+...+..+..|+|.||||+|||++.+.+++.++ .+......++ .++..++.|..- .. ..+|.||.+..
T Consensus 55 ~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~---~~~~rV~~~~-~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~ 130 (327)
T TIGR01650 55 KAICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLN---WPCVRVNLDS-HVSRIDLVGKDAIVLKDGKQITEFRDGILPW 130 (327)
T ss_pred HHHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHC---CCeEEEEecC-CCChhhcCCCceeeccCCcceeEEecCcchh
Confidence 34555566788899999999999999999999975 3444333343 366688999732 11 14899999999
Q ss_pred HHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeecc-CCCeeecCCCceEEEEeCCC
Q psy17620 668 IFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLA-NGERIRLLAHCQLLFEIHPI 733 (741)
Q Consensus 668 i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~-nGeri~l~~~~rliFE~~~L 733 (741)
+++ .+.|++|| .-++|.-...||++||+.+.|+++ .|+.|..+|.+|+|.-....
T Consensus 131 A~~-----------~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~ 188 (327)
T TIGR01650 131 ALQ-----------HNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTI 188 (327)
T ss_pred HHh-----------CCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCC
Confidence 887 45899999 456888999999999999999987 56777777888888765544
No 10
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.94 E-value=6.9e-09 Score=109.90 Aligned_cols=132 Identities=17% Similarity=0.165 Sum_probs=104.6
Q ss_pred hhhcCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEee-----cceEEecCCceEEEeccC-CCCCCCCchHH
Q psy17620 418 LSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFE-----GHDIIMNNKVGIFITMNP-GYAGRTELPES 491 (741)
Q Consensus 418 laq~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~-----g~~i~l~~~~~iFiTmNp-gy~gr~eLP~n 491 (741)
++..|.|+++||+||++.++.+.+.+. +.. ..+.+. +..+.++|+|.+++|+|| .|+|..++|+.
T Consensus 102 A~~~g~~lllDEi~r~~~~~q~~Ll~~-------Le~--~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~a 172 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKPETNNVLLSV-------FEE--GVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDA 172 (262)
T ss_pred HHHcCCEEEEcchhhCCHHHHHHHHHH-------hcC--CeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHH
Confidence 345688999999999999998877433 322 233332 356789999999999998 59999999999
Q ss_pred HhhcceeeeccCCCHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhhcCCccccchhhHHHHHHHhhHh
Q psy17620 492 VKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGEL 563 (741)
Q Consensus 492 Lk~lFRpvam~~PD~~~I~ei~L~s~GF~~a~~La~Kl~~l~~l~~e~ls~q~hydfgLRalksVL~~a~~l 563 (741)
|+..|..+.+..||.+.-.+|.... |.-+..++.+++.++..++ +.+.++..|.|+.-.+.+.+...
T Consensus 173 L~~R~~~i~i~~P~~~~e~~Il~~~--~~~~~~~~~~iv~~~~~~R---~~~~~~~~~~r~~i~~~~~~~~~ 239 (262)
T TIGR02640 173 LLDRLITIFMDYPDIDTETAILRAK--TDVAEDSAATIVRLVREFR---ASGDEITSGLRASLMIAEVATQQ 239 (262)
T ss_pred HHhhcEEEECCCCCHHHHHHHHHHh--hCCCHHHHHHHHHHHHHHH---hhCCccCCcHHHHHHHHHHHHHc
Confidence 9999999999999998888876543 4567889999999999888 45677888988877776665554
No 11
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.86 E-value=1.4e-08 Score=107.64 Aligned_cols=122 Identities=16% Similarity=0.310 Sum_probs=92.7
Q ss_pred HHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccC-------------------
Q psy17620 595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNP------------------- 655 (741)
Q Consensus 595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~------------------- 655 (741)
++...+..+..|+|.||||+|||++.+.+++.+ |.++.....++ ..+..++.|.+.+
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~-~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~ 88 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR---DRPVMLINGDA-ELTTSDLVGSYAGYTRKKVHDQFIHNVVKLED 88 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCc-cCCHHHHhhhhcccchhhHHHHHHHHhhhhhc
Confidence 455667788999999999999999999999865 55655555554 4445677776532
Q ss_pred -CCCCcccChHHHHHHHhcCCCCCCCCCCeEEEEcC--CCChhhhhhccccccCCceeeccC----CCeeecCCCceEEE
Q psy17620 656 -ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDG--DVDALWIENMNSVMDDNKILTLAN----GERIRLLAHCQLLF 728 (741)
Q Consensus 656 -~t~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfDG--~vd~~wiE~LNsvLDdnk~L~L~n----Geri~l~~~~rliF 728 (741)
...+|.||.+..+++ .+.|+++|. .+++.....|+++|++ +.+++++ |+.+..++++|+|+
T Consensus 89 ~~~~~~~~g~l~~A~~-----------~g~~lllDEi~r~~~~~q~~Ll~~Le~-~~~~i~~~~~~~~~i~~~~~frvIa 156 (262)
T TIGR02640 89 IVRQNWVDNRLTLAVR-----------EGFTLVYDEFTRSKPETNNVLLSVFEE-GVLELPGKRGTSRYVDVHPEFRVIF 156 (262)
T ss_pred ccceeecCchHHHHHH-----------cCCEEEEcchhhCCHHHHHHHHHHhcC-CeEEccCCCCCCceEecCCCCEEEE
Confidence 113699999888776 236999994 4788999999999997 6788875 46788999999988
Q ss_pred EeCC
Q psy17620 729 EIHP 732 (741)
Q Consensus 729 E~~~ 732 (741)
-...
T Consensus 157 TsN~ 160 (262)
T TIGR02640 157 TSNP 160 (262)
T ss_pred eeCC
Confidence 6553
No 12
>KOG1808|consensus
Probab=98.80 E-value=2.1e-08 Score=126.17 Aligned_cols=331 Identities=22% Similarity=0.242 Sum_probs=198.9
Q ss_pred ccccccCCCCCceeccchhHHHHHHHHHHHcc------cCCCCC------------------------CCCHH-HHH---
Q psy17620 367 YGYEYMGLNGRLVITPLTDRIYLTITQALSMR------LGAAPA------------------------GMDFL-AFG--- 412 (741)
Q Consensus 367 YgyEYlG~~~rLViTPLTdRc~~tl~~Al~~~------~GGap~------------------------~~d~~-~~~--- 412 (741)
-|-|-.-+..-.|+||-..+--..+++|...+ .|++-+ .+|++ .+|
T Consensus 408 ~gs~~~~~~~~~i~T~~vq~~la~~~~a~~~~~~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~ 487 (1856)
T KOG1808|consen 408 SGSELTSEATHYIITPRVQKNLADLARAISSGKFPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYV 487 (1856)
T ss_pred CCCccccccceeeccHHHHHHHHHHHHHHhcCCCCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhh
Confidence 44445555666999999999999999999876 243322 35553 344
Q ss_pred -----------HHHHHhhhcCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeec-ceEEecCCceEEEeccC
Q psy17620 413 -----------KILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEG-HDIIMNNKVGIFITMNP 480 (741)
Q Consensus 413 -----------ri~~Glaq~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g-~~i~l~~~~~iFiTmNp 480 (741)
-.+.+++--|.|..|||+|+.+.+||.++ +..+..+.+-+..++ +.+..||++.+|.|.||
T Consensus 488 ~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~~dvL~aL-------nrllddnRel~ipe~~rlv~~h~~f~lfatqn~ 560 (1856)
T KOG1808|consen 488 ADDNGDLVFREGVLVQALRNGDWIVLDELNLAPHDVLEAL-------NRLLDDNRELFIPETQRLVKAHPEFMLFATQNP 560 (1856)
T ss_pred cCCCCCeeeehhHHHHHHHhCCEEEeccccccchHHHHHH-------HhhhhhhccccccccceeeccCcchhhhhhccC
Confidence 25778899999999999999999999987 344445566677775 56889999999999999
Q ss_pred C--CCCCCCchHHHhhcceeeecc---CCCHHHHHHHHHhhcCccchHHHHHHHHHHHHHHH--HHhh-----------c
Q psy17620 481 G--YAGRTELPESVKALFRPVVCI---VPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSK--EQLS-----------K 542 (741)
Q Consensus 481 g--y~gr~eLP~nLk~lFRpvam~---~PD~~~I~ei~L~s~GF~~a~~La~Kl~~l~~l~~--e~ls-----------~ 542 (741)
. |+||+.|-.+++..|-.+-+. .+.+..|.+ .+-..+...++|++..|.-.+ +++| .
T Consensus 561 ~~~y~grk~lsRa~~~rf~e~~f~~~~e~e~~~i~~-----~~~~i~~~~~~k~~~~~~~L~~~rqls~i~e~~~~~gtl 635 (1856)
T KOG1808|consen 561 PGTYGGRKILSRALRNRFIELHFDDIGEEELEEILE-----HRCGIPPSYEKKMVQVMRELSLRRQLSRIFEQKPSFGTL 635 (1856)
T ss_pred ccccchhhhhhhcccccchhhhhhhcCchhhhhhhc-----ccccCCchHHHHHHHHhhhhhhHHHHhhHHHhccccCCc
Confidence 5 999999999988887765443 333332222 233356788899998888553 3444 2
Q ss_pred CCccccchhh------HHHHHH------HhhHhHhh-----hccchH----HHHHHHHHHhccCCCcchhhHHHHHHHhh
Q psy17620 543 QCHYDFGMRA------LKSVLV------MAGELKRA-----ALQLEE----SVVLMRALRDMNLPKFVSEDVVQMYETML 601 (741)
Q Consensus 543 q~hydfgLRa------lksVL~------~a~~l~~~-----~~~~~E----~~~l~ral~~~~lPkl~~~Dv~qL~e~l~ 601 (741)
++|.+|.+|- -..-+. .+.+.+.. .....| ..+-..++.....|..... .+.-.-.+.
T Consensus 636 rd~f~w~~r~~e~~~~~~~~l~~~g~~~L~~r~r~~~~~~~v~~~~e~~~~~~~~~~~l~~~~t~~m~r~-~~~~~~~~~ 714 (1856)
T KOG1808|consen 636 RDLFRWLLRFTETIAESNDQLAENGYMLLSSRQRYEKEKRLVQQPLEKVMRKAVDKDQLSTVWTPGMTRL-TIEKALVLA 714 (1856)
T ss_pred HHHHHHHhhccccccchhhhhhhhhHHHhhhhhhccchhhhhhccchhhhHHHHHHHHHHhhcchhhhhh-hhhHHHHHH
Confidence 2344444430 000000 00000000 000000 0011111111122222111 111112234
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc------------cccccccc---CCCCCcccChHH
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV------------IELYGVLN---PETRDWYDGLLS 666 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~------------~eLyG~~d---~~t~eW~DGvls 666 (741)
....+ ++|++|||||++..+++.... ....+++-.+.+. ....|..+ ..-.+|+||+++
T Consensus 715 ~~~~~-~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ew~dglLi 788 (1856)
T KOG1808|consen 715 IKEQV-LVGLTGCGDTTVCQILAEKSG-----VALRILNAHEHTEAQRPNVLFRENLQHDEIREDKMLKDLFEWSDGLLI 788 (1856)
T ss_pred hhcch-hcccccccchhhhhhhhhccc-----ceeeeehhhhhhhhccccccccccchhhHhhhhhhhhccccccCccch
Confidence 45566 999999999999999887653 2233333333331 22233333 122589999999
Q ss_pred HHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccC-----CCeeecCCCceEE
Q psy17620 667 NIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLAN-----GERIRLLAHCQLL 727 (741)
Q Consensus 667 ~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~n-----Geri~l~~~~rli 727 (741)
..++.. +-++.| -+++....|.+|++|..-+.|.+.. .+.+...+...++
T Consensus 789 ~a~~~G-----------~~~l~Dei~la~dsvleRln~~Le~~rtL~~~e~~~a~~~~v~A~~~f~~~ 845 (1856)
T KOG1808|consen 789 GAQGVG-----------KQFLVDEISLAEDSVLERLNEVLEPDRTLLLLENQTAEEETVIAEEGFQLV 845 (1856)
T ss_pred hhhhcc-----------chhhhhccccchhhHHHHHHHHhCcccccccccccccchhceeecccchhh
Confidence 999854 334445 3566778999999998877777765 4555555554443
No 13
>PHA02244 ATPase-like protein
Probab=98.71 E-value=5.7e-08 Score=106.37 Aligned_cols=118 Identities=14% Similarity=0.256 Sum_probs=91.7
Q ss_pred HHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcC
Q psy17620 595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNK 674 (741)
Q Consensus 595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~ 674 (741)
.+-+.+..+.+|+|.||||||||++.+.++..++ . .++.+| ...+..++.|..+. .+.|.||.|...++
T Consensus 111 ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg---~--pfv~In-~l~d~~~L~G~i~~-~g~~~dgpLl~A~~---- 179 (383)
T PHA02244 111 DIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALD---L--DFYFMN-AIMDEFELKGFIDA-NGKFHETPFYEAFK---- 179 (383)
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhC---C--CEEEEe-cChHHHhhcccccc-cccccchHHHHHhh----
Confidence 4556778899999999999999999999999853 2 345555 22344567786654 35899999988876
Q ss_pred CCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCC
Q psy17620 675 PLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHP 732 (741)
Q Consensus 675 ~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~ 732 (741)
...|+++| +.+++.-...||++||+. .+.+. |+++..++++|+|+-...
T Consensus 180 -------~GgvLiLDEId~a~p~vq~~L~~lLd~r-~l~l~-g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 180 -------KGGLFFIDEIDASIPEALIIINSAIANK-FFDFA-DERVTAHEDFRVISAGNT 230 (383)
T ss_pred -------cCCEEEEeCcCcCCHHHHHHHHHHhccC-eEEec-CcEEecCCCEEEEEeeCC
Confidence 34799999 556788999999999875 66665 778999999999986654
No 14
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.54 E-value=7.1e-07 Score=96.74 Aligned_cols=133 Identities=19% Similarity=0.237 Sum_probs=98.3
Q ss_pred hhhcCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEee--cceEEecCCceEEEeccC-C-------CCCCCC
Q psy17620 418 LSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFE--GHDIIMNNKVGIFITMNP-G-------YAGRTE 487 (741)
Q Consensus 418 laq~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~--g~~i~l~~~~~iFiTmNp-g-------y~gr~e 487 (741)
+++.|.|++|||+|++++++++++-.. + +....+.+. ++.|..||.|.+|+|+|| | |.|...
T Consensus 131 A~~~g~illlDEin~a~p~~~~~L~~l-------L-E~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~ 202 (327)
T TIGR01650 131 ALQHNVALCFDEYDAGRPDVMFVIQRV-------L-EAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQ 202 (327)
T ss_pred HHhCCeEEEechhhccCHHHHHHHHHH-------h-ccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeec
Confidence 458999999999999999999886322 2 223445553 567878999999999999 4 999999
Q ss_pred chHHHhhcceee-eccCCCHHHHHHHHHhh-cCcc--chHHHHHHHHHHHHHHHHHh-hcCCccccchhhHHHHHH
Q psy17620 488 LPESVKALFRPV-VCIVPDFELICQIMLFS-EGFL--EAKVLAKKMAVLYKLSKEQL-SKQCHYDFGMRALKSVLV 558 (741)
Q Consensus 488 LP~nLk~lFRpv-am~~PD~~~I~ei~L~s-~GF~--~a~~La~Kl~~l~~l~~e~l-s~q~hydfgLRalksVL~ 558 (741)
||+.+...|.-+ .|.-|+.+.=.+|+... .|+. .++.+.++++.+-...++.. ......-.+-|++....+
T Consensus 203 l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~ 278 (327)
T TIGR01650 203 INQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAE 278 (327)
T ss_pred CCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHH
Confidence 999999999754 78889988888887654 3543 26789999999999888754 222222334455544443
No 15
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.26 E-value=5.6e-06 Score=93.12 Aligned_cols=149 Identities=17% Similarity=0.291 Sum_probs=100.1
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCC--CCeEEEEeCCCccccccccccc
Q psy17620 576 LMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLG--YPARTYTLNPKAVSVIELYGVL 653 (741)
Q Consensus 576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~--~~~~~~~inpka~t~~eLyG~~ 653 (741)
+..++.++.+| .+++..+...+..++.++++||||+|||++.+.|+..+..-. ..+..... +...+..++.|.+
T Consensus 170 ~~~~l~d~~i~---e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtF-HpsySYeDFI~G~ 245 (459)
T PRK11331 170 LEDALNDLFIP---ETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQF-HQSYSYEDFIQGY 245 (459)
T ss_pred HHHHhhcccCC---HHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEee-cccccHHHHhccc
Confidence 33444444333 233667888888999999999999999999999998874311 12223333 3345556666555
Q ss_pred cCC--CCCcccChHHHHHHHhcCCCCCCCCCCeEEEEc----CCCChhhhhhccccccCCc-----eeecc----CCCee
Q psy17620 654 NPE--TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD----GDVDALWIENMNSVMDDNK-----ILTLA----NGERI 718 (741)
Q Consensus 654 d~~--t~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD----G~vd~~wiE~LNsvLDdnk-----~L~L~----nGeri 718 (741)
-|. ...|.+|+|..+.+++..+ ...+.++++| |+++..+-|.+ ++||..+ .+.|+ +++++
T Consensus 246 rP~~vgy~~~~G~f~~~~~~A~~~----p~~~~vliIDEINRani~kiFGel~-~lLE~~~rg~~~~v~l~y~e~d~e~f 320 (459)
T PRK11331 246 RPNGVGFRRKDGIFYNFCQQAKEQ----PEKKYVFIIDEINRANLSKVFGEVM-MLMEHDKRGENWSVPLTYSENDEERF 320 (459)
T ss_pred CCCCCCeEecCchHHHHHHHHHhc----ccCCcEEEEehhhccCHHHhhhhhh-hhccccccccccceeeeccccccccc
Confidence 443 3578999999998887543 2367999999 66666666654 4565332 23333 35789
Q ss_pred ecCCCceEEEEeCCC
Q psy17620 719 RLLAHCQLLFEIHPI 733 (741)
Q Consensus 719 ~l~~~~rliFE~~~L 733 (741)
.+|+|++||--+.+-
T Consensus 321 ~iP~Nl~IIgTMNt~ 335 (459)
T PRK11331 321 YVPENVYIIGLMNTA 335 (459)
T ss_pred cCCCCeEEEEecCcc
Confidence 999999999887543
No 16
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.23 E-value=6e-05 Score=90.78 Aligned_cols=113 Identities=23% Similarity=0.215 Sum_probs=73.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc----cccccccccccCCCCCcccChHHHHHHHhcCCCCCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA----VSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPG 679 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka----~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~ 679 (741)
..++++||||+|||.+.+.|++.+. .+ ..++|... .+...|+|.-..-.+....|.++..+|+.
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~---~~--~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~------- 556 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALG---IE--LLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKH------- 556 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC---CC--cEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhC-------
Confidence 3689999999999999999999874 23 33333222 23567888531111234567888888742
Q ss_pred CCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCC
Q psy17620 680 SKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPI 733 (741)
Q Consensus 680 ~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L 733 (741)
...-++|| .-+++.....|-.+||++ .++-..|..+.+.+. +++=|+|+
T Consensus 557 --p~sVlllDEieka~~~v~~~LLq~ld~G-~ltd~~g~~vd~rn~--iiI~TsN~ 607 (758)
T PRK11034 557 --PHAVLLLDEIEKAHPDVFNLLLQVMDNG-TLTDNNGRKADFRNV--VLVMTTNA 607 (758)
T ss_pred --CCcEEEeccHhhhhHHHHHHHHHHHhcC-eeecCCCceecCCCc--EEEEeCCc
Confidence 34789999 446777778888888764 556667776655432 33434443
No 17
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.03 E-value=0.00013 Score=88.16 Aligned_cols=114 Identities=22% Similarity=0.232 Sum_probs=73.0
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeC--CCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCC
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN--PKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE 682 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~in--pka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~ 682 (741)
.++++||||+|||.+.+.|++.+. .+.....+. ....+...+.|....--+.=..|.++..+|+. .
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~---~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~---------p 553 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALG---VHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKH---------P 553 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhc---CCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhC---------C
Confidence 478999999999999999999873 222222211 22233445555531100111356788888742 4
Q ss_pred CeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCC
Q psy17620 683 RKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPI 733 (741)
Q Consensus 683 ~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L 733 (741)
..-++|| ..++|.....|-.+||+. .++-..|..+.+.+. +++-|+|+
T Consensus 554 ~~VvllDEieka~~~~~~~Ll~~ld~g-~~~d~~g~~vd~~~~--iii~Tsn~ 603 (731)
T TIGR02639 554 HCVLLLDEIEKAHPDIYNILLQVMDYA-TLTDNNGRKADFRNV--ILIMTSNA 603 (731)
T ss_pred CeEEEEechhhcCHHHHHHHHHhhccC-eeecCCCcccCCCCC--EEEECCCc
Confidence 5899999 557888888888899865 467777877766643 44445555
No 18
>PHA02244 ATPase-like protein
Probab=97.95 E-value=0.00014 Score=80.03 Aligned_cols=121 Identities=16% Similarity=0.276 Sum_probs=90.3
Q ss_pred HHHHHHhhhcCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccC---C----CCC
Q psy17620 412 GKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNP---G----YAG 484 (741)
Q Consensus 412 ~ri~~Glaq~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNp---g----y~g 484 (741)
|.++.. ...|.|+++||+|+++.+++..+...+ .. ..+.+.|..+..||+|.+++|.|| | |+|
T Consensus 172 gpLl~A-~~~GgvLiLDEId~a~p~vq~~L~~lL-------d~--r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G 241 (383)
T PHA02244 172 TPFYEA-FKKGGLFFIDEIDASIPEALIIINSAI-------AN--KFFDFADERVTAHEDFRVISAGNTLGKGADHIYVA 241 (383)
T ss_pred hHHHHH-hhcCCEEEEeCcCcCCHHHHHHHHHHh-------cc--CeEEecCcEEecCCCEEEEEeeCCCccCcccccCC
Confidence 445554 467899999999999999988763333 22 256677888999999999999999 3 568
Q ss_pred CCCchHHHhhcceeeeccCCCHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhhc-CCccccchhhH
Q psy17620 485 RTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSK-QCHYDFGMRAL 553 (741)
Q Consensus 485 r~eLP~nLk~lFRpvam~~PD~~~I~ei~L~s~GF~~a~~La~Kl~~l~~l~~e~ls~-q~hydfgLRal 553 (741)
+..||+.+...|..|.+.-|+ + +|..+.+ + +.+++.+-..++..+.. ...+.++.|.+
T Consensus 242 ~k~L~~AllDRFv~I~~dyp~-~--~E~~i~~-~-------~~~lv~~a~~lR~~~~~~~l~~~~StR~l 300 (383)
T PHA02244 242 RNKIDGATLDRFAPIEFDYDE-K--IEHLISN-G-------DEDLVNFVALLRHEMAEKGLDHVFSMRAI 300 (383)
T ss_pred CcccCHHHHhhcEEeeCCCCc-H--HHHHHhh-h-------HHHHHHHHHHHHHHHhcCCCCccccHHHH
Confidence 999999999999999999887 3 4544432 1 56888888888876532 23355666654
No 19
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.70 E-value=6.5e-05 Score=70.88 Aligned_cols=65 Identities=23% Similarity=0.263 Sum_probs=43.8
Q ss_pred cceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccC-CCCCCCCchHHHhhcc
Q psy17620 423 AWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNP-GYAGRTELPESVKALF 496 (741)
Q Consensus 423 aW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNp-gy~gr~eLP~nLk~lF 496 (741)
.+..+||+||.++.+.|++- .|+. ..++.++|.+.++.+.+.|++|+|| ++.|..+||+.+...|
T Consensus 64 ~ill~DEiNrappktQsAlL-------eam~--Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 64 NILLADEINRAPPKTQSALL-------EAME--ERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp SEEEEETGGGS-HHHHHHHH-------HHHH--HSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred ceeeecccccCCHHHHHHHH-------HHHH--cCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 37899999999999999873 3333 3478899999999999999999999 8899999999999877
No 20
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.60 E-value=5.5e-05 Score=71.81 Aligned_cols=69 Identities=30% Similarity=0.356 Sum_probs=45.4
Q ss_pred cCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecC------CceEEEeccCCCCCCCCchHHHhh
Q psy17620 421 CGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNN------KVGIFITMNPGYAGRTELPESVKA 494 (741)
Q Consensus 421 ~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~------~~~iFiTmNpgy~gr~eLP~nLk~ 494 (741)
.|.|+++||+|+++.++++.+- ..+..+.-.+.-.+..+..++ ++.+++||||...++.++++.|+.
T Consensus 65 ~~~il~lDEin~a~~~v~~~L~-------~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~ 137 (139)
T PF07728_consen 65 KGGILVLDEINRAPPEVLESLL-------SLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD 137 (139)
T ss_dssp EEEEEEESSCGG--HHHHHTTH-------HHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT
T ss_pred ceeEEEECCcccCCHHHHHHHH-------HHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh
Confidence 8999999999999999998873 334332211112234454444 599999999988899999999998
Q ss_pred cc
Q psy17620 495 LF 496 (741)
Q Consensus 495 lF 496 (741)
.|
T Consensus 138 Rf 139 (139)
T PF07728_consen 138 RF 139 (139)
T ss_dssp T-
T ss_pred hC
Confidence 87
No 21
>KOG0730|consensus
Probab=97.58 E-value=0.00052 Score=79.40 Aligned_cols=237 Identities=21% Similarity=0.301 Sum_probs=120.3
Q ss_pred HHHHHHHHHh--hhcCcceeecccccCCh------hhHHHHHHHHHHHHHHHhhcCceeEee--cceEEecCCce-----
Q psy17620 409 LAFGKILSGL--SQCGAWGCFDEFNRIDV------SVLSVISTQLLTIRTALLINATRFQFE--GHDIIMNNKVG----- 473 (741)
Q Consensus 409 ~~~~ri~~Gl--aq~GaW~cfDEfnrl~~------~vLSvva~qi~~I~~al~~~~~~~~~~--g~~i~l~~~~~----- 473 (741)
+-+.++|.-+ -+..+-.-.||++-+-. .|.+-+..|+.+..+.+....+.+.+. ++.-.+||...
T Consensus 264 ~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd 343 (693)
T KOG0730|consen 264 SNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFD 343 (693)
T ss_pred HHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCc
Confidence 4455565432 23367788899987653 358889999999998887666666654 23333444433
Q ss_pred --EEEeccCCCCCCCCchHHHhhcceeeeccCCCHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhhcCCccccchh
Q psy17620 474 --IFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMR 551 (741)
Q Consensus 474 --iFiTmNpgy~gr~eLP~nLk~lFRpvam~~PD~~~I~ei~L~s~GF~~a~~La~Kl~~l~~l~~e~ls~q~hydfgLR 551 (741)
++|.+ |+-.||.++ |+.++.-+... +-...-++--..+||..|. +..++..+.-+.. |
T Consensus 344 ~ev~Igi-P~~~~RldI---l~~l~k~~~~~--~~~~l~~iA~~thGyvGaD-----L~~l~~ea~~~~~---------r 403 (693)
T KOG0730|consen 344 REVEIGI-PGSDGRLDI---LRVLTKKMNLL--SDVDLEDIAVSTHGYVGAD-----LAALCREASLQAT---------R 403 (693)
T ss_pred ceeeecC-CCchhHHHH---HHHHHHhcCCc--chhhHHHHHHHccchhHHH-----HHHHHHHHHHHHh---------h
Confidence 34433 444445443 44444444333 2222222222345665332 2222221111100 0
Q ss_pred hHHHHHHHhhHhHhhhccchHHHHHHHHHHhccCCCcchhh---HHHHHHHh-------------------hccceEEEE
Q psy17620 552 ALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSED---VVQMYETM-------------------LTRHSTMIV 609 (741)
Q Consensus 552 alksVL~~a~~l~~~~~~~~E~~~l~ral~~~~lPkl~~~D---v~qL~e~l-------------------~~r~gv~lv 609 (741)
.....+..|.. +-.|. -+|-+. ..+|+..++| ..++.+.| .--.||+++
T Consensus 404 ~~~~~~~~A~~--~i~ps------a~Re~~-ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLly 474 (693)
T KOG0730|consen 404 RTLEIFQEALM--GIRPS------ALREIL-VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLY 474 (693)
T ss_pred hhHHHHHHHHh--cCCch------hhhhee-ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEE
Confidence 00001111110 00010 111111 4566666666 11221111 224599999
Q ss_pred ecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCCeEEEEc
Q psy17620 610 GPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD 689 (741)
Q Consensus 610 Gp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD 689 (741)
||||||||++.|+++..-. +|-=+++-.|||--|--+ .+-.+..+||++.+. .+..|.||
T Consensus 475 GPPGC~KT~lAkalAne~~----------~nFlsvkgpEL~sk~vGe----SEr~ir~iF~kAR~~------aP~IiFfD 534 (693)
T KOG0730|consen 475 GPPGCGKTLLAKALANEAG----------MNFLSVKGPELFSKYVGE----SERAIREVFRKARQV------APCIIFFD 534 (693)
T ss_pred CCCCcchHHHHHHHhhhhc----------CCeeeccCHHHHHHhcCc----hHHHHHHHHHHHhhc------CCeEEehh
Confidence 9999999999999998642 333455556665444221 133567778877653 34788888
Q ss_pred CCCChh
Q psy17620 690 GDVDAL 695 (741)
Q Consensus 690 G~vd~~ 695 (741)
.+|+.
T Consensus 535 -EiDsi 539 (693)
T KOG0730|consen 535 -EIDAL 539 (693)
T ss_pred -hHHhH
Confidence 34443
No 22
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.54 E-value=0.00022 Score=70.80 Aligned_cols=120 Identities=19% Similarity=0.271 Sum_probs=83.0
Q ss_pred HHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCC---CCCcccChHHH
Q psy17620 595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPE---TRDWYDGLLSN 667 (741)
Q Consensus 595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~---t~eW~DGvls~ 667 (741)
++-.......+|+|+|++||||+.+.+.+.+...+-+ -....+|..+++. .+|||..... ....+.|+|..
T Consensus 14 ~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~--~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~ 91 (168)
T PF00158_consen 14 QAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKN--GPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQ 91 (168)
T ss_dssp HHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTT--S-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHH
T ss_pred HHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhccc--CCeEEEehhhhhcchhhhhhhccccccccccccccCCceee
Confidence 3445556778999999999999999999988654322 3456777777764 5789986431 23456676654
Q ss_pred HHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620 668 IFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH 731 (741)
Q Consensus 668 i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~ 731 (741)
+ ..--++|| +.+++..-+.|-.+|++++...+.+.+ ..+.++|+|+-++
T Consensus 92 A-------------~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~--~~~~~~RiI~st~ 142 (168)
T PF00158_consen 92 A-------------NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDK--PVPVDVRIIASTS 142 (168)
T ss_dssp T-------------TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSS--EEE--EEEEEEES
T ss_pred c-------------cceEEeecchhhhHHHHHHHHHHHHhhchhccccccc--cccccceEEeecC
Confidence 2 33578899 668889999999999988777776555 4455899999876
No 23
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.26 E-value=0.0087 Score=73.55 Aligned_cols=114 Identities=24% Similarity=0.314 Sum_probs=69.6
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc----cccccccccccCCCCCcc-cChHHHHHHHhcCCCCCC
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA----VSVIELYGVLNPETRDWY-DGLLSNIFRAVNKPLDPG 679 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka----~t~~eLyG~~d~~t~eW~-DGvls~i~R~~~~~~~~~ 679 (741)
.++++||||+|||++.+.|++.+-.. ......++-.. .+...|+|.- |.--... .|.++..+|+
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~~~l~g~~-~gyvg~~~~~~l~~~~~~-------- 609 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTVSKLIGSP-PGYVGYNEGGQLTEAVRK-------- 609 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccHHHhcCCC-CcccCcCccchHHHHHHh--------
Confidence 57899999999999999999987321 22233333222 2334455542 1001122 3567777773
Q ss_pred CCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCC
Q psy17620 680 SKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPI 733 (741)
Q Consensus 680 ~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L 733 (741)
....-|+|| .-++|.....|-.+||+. .++-+.|..+... ++-+|+ |+|+
T Consensus 610 -~p~~VvllDeieka~~~v~~~Llq~le~g-~~~d~~g~~v~~~-~~i~I~-Tsn~ 661 (821)
T CHL00095 610 -KPYTVVLFDEIEKAHPDIFNLLLQILDDG-RLTDSKGRTIDFK-NTLIIM-TSNL 661 (821)
T ss_pred -CCCeEEEECChhhCCHHHHHHHHHHhccC-ceecCCCcEEecC-ceEEEE-eCCc
Confidence 234789999 346777777777777665 5667788888775 344444 4443
No 24
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.17 E-value=0.012 Score=72.70 Aligned_cols=115 Identities=23% Similarity=0.291 Sum_probs=72.8
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC----ccccccccccccCCCCCc-ccChHHHHHHHhcCCCCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK----AVSVIELYGVLNPETRDW-YDGLLSNIFRAVNKPLDP 678 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk----a~t~~eLyG~~d~~t~eW-~DGvls~i~R~~~~~~~~ 678 (741)
+.++++||||+|||++.+.|++.+..-+.+. .++|-. ..+...|+|.- |.-... ..|.++..+|+
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~--i~~d~s~~~~~~~~~~l~g~~-~g~~g~~~~g~l~~~v~~------- 665 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALAEFLFDDEDAM--VRIDMSEYMEKHSVARLIGAP-PGYVGYEEGGQLTEAVRR------- 665 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCCCCcE--EEEechhhcccchHHHhcCCC-CCccCcccccHHHHHHHc-------
Confidence 4688999999999999999999874333333 333322 22334566543 111111 24678877773
Q ss_pred CCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCC
Q psy17620 679 GSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPI 733 (741)
Q Consensus 679 ~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L 733 (741)
....-|+|| +.++|.....|-.+||+. .++-..|..+.+.+ + +|+=|+|+
T Consensus 666 --~p~~vlllDeieka~~~v~~~Ll~~l~~g-~l~d~~g~~vd~rn-~-iiI~TSn~ 717 (852)
T TIGR03346 666 --KPYSVVLFDEVEKAHPDVFNVLLQVLDDG-RLTDGQGRTVDFRN-T-VIIMTSNL 717 (852)
T ss_pred --CCCcEEEEeccccCCHHHHHHHHHHHhcC-ceecCCCeEEecCC-c-EEEEeCCc
Confidence 134689999 667888878888888766 45666777777654 3 44445555
No 25
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.17 E-value=0.0017 Score=60.08 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=27.0
Q ss_pred HHHHhhc--cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 596 MYETMLT--RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 596 L~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+...+.. .+.++|+||||+|||++.+.++..+.
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 3444444 67899999999999999999998875
No 26
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.10 E-value=0.0012 Score=72.38 Aligned_cols=117 Identities=16% Similarity=0.232 Sum_probs=81.5
Q ss_pred HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC-CccccccccccccCCC-------CCcccCh
Q psy17620 593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP-KAVSVIELYGVLNPET-------RDWYDGL 664 (741)
Q Consensus 593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp-ka~t~~eLyG~~d~~t-------~eW~DGv 664 (741)
+......+.....++|.||||+|||++.+.++++++ .+ ..+++. .-++..+++|.++... ..|.+|.
T Consensus 33 ~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~---~~--~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gp 107 (329)
T COG0714 33 IELALLALLAGGHVLLEGPPGVGKTLLARALARALG---LP--FVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGP 107 (329)
T ss_pred HHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHhC---CC--eEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCC
Confidence 444566777888999999999999999999999986 23 333332 3455688888875442 4688887
Q ss_pred HHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEE
Q psy17620 665 LSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLF 728 (741)
Q Consensus 665 ls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliF 728 (741)
+....+ ..+++| ...+|..--.|.++|++.+.---..++ +.+++.+.++.
T Consensus 108 l~~~~~-------------~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~-~~~~~~f~via 159 (329)
T COG0714 108 LFAAVR-------------VILLLDEINRAPPEVQNALLEALEERQVTVPGLTT-IRLPPPFIVIA 159 (329)
T ss_pred cccccc-------------eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCC-cCCCCCCEEEE
Confidence 654322 588888 667788888888888886444333443 77777665554
No 27
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.08 E-value=0.002 Score=67.27 Aligned_cols=109 Identities=19% Similarity=0.380 Sum_probs=68.8
Q ss_pred HHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhc
Q psy17620 594 VQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVN 673 (741)
Q Consensus 594 ~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~ 673 (741)
..+.+++..+.|..++||+|+|||..+|.|++++++ . +++.|... .-....++++++-+.
T Consensus 23 ~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG~---~--~~vfnc~~---------------~~~~~~l~ril~G~~ 82 (231)
T PF12774_consen 23 LTLTQALSLNLGGALSGPAGTGKTETIKDLARALGR---F--VVVFNCSE---------------QMDYQSLSRILKGLA 82 (231)
T ss_dssp HHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT-------EEEEETTS---------------SS-HHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhCC---e--EEEecccc---------------cccHHHHHHHHHHHh
Confidence 346677788899999999999999999999999753 3 34443221 122335778888665
Q ss_pred CCCCCCCCCCeEEEEcC--CCChhhh----hhcccc---c-cCCceeeccCCCeeecCCCceEEEEe
Q psy17620 674 KPLDPGSKERKYILFDG--DVDALWI----ENMNSV---M-DDNKILTLANGERIRLLAHCQLLFEI 730 (741)
Q Consensus 674 ~~~~~~~~~~~WIVfDG--~vd~~wi----E~LNsv---L-Ddnk~L~L~nGeri~l~~~~rliFE~ 730 (741)
. ..-|.+||. .++.+.+ +.+.++ + ...+.+++ .|+.|.+.+++.++.-+
T Consensus 83 ~-------~GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~-~g~~i~l~~~~~iFiT~ 141 (231)
T PF12774_consen 83 Q-------SGAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTL-EGQEIKLNPNCGIFITM 141 (231)
T ss_dssp H-------HT-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEE-TTCEEE--TT-EEEEEE
T ss_pred h-------cCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhccccccccc-CCCEEEEccceeEEEee
Confidence 4 458999993 3554322 222222 2 34556666 68999999998877644
No 28
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.04 E-value=0.0081 Score=65.82 Aligned_cols=109 Identities=26% Similarity=0.226 Sum_probs=82.0
Q ss_pred cceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecce-EEecCCceEEEeccC-CCCCCCCchHHHhhcc-eee
Q psy17620 423 AWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHD-IIMNNKVGIFITMNP-GYAGRTELPESVKALF-RPV 499 (741)
Q Consensus 423 aW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~-i~l~~~~~iFiTmNp-gy~gr~eLP~nLk~lF-Rpv 499 (741)
.-+.+||+||.++++.+++ ..++. ...++..|.. +.+++.+-+++|.|| .|.|..+||+.++..| -.+
T Consensus 114 ~ill~DEInra~p~~q~aL-------l~~l~--e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~ 184 (329)
T COG0714 114 VILLLDEINRAPPEVQNAL-------LEALE--ERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRI 184 (329)
T ss_pred eEEEEeccccCCHHHHHHH-------HHHHh--CcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEE
Confidence 5789999999999999987 34443 2367777777 999999999999999 6778999999999999 888
Q ss_pred eccCCCHHH-HHHHHHhhcCccc--hHHHHHHHHHHHHHHHHHh
Q psy17620 500 VCIVPDFEL-ICQIMLFSEGFLE--AKVLAKKMAVLYKLSKEQL 540 (741)
Q Consensus 500 am~~PD~~~-I~ei~L~s~GF~~--a~~La~Kl~~l~~l~~e~l 540 (741)
.+.-|+... ...++....|... .....+++++.....+.+.
T Consensus 185 ~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 228 (329)
T COG0714 185 YVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQK 228 (329)
T ss_pred ecCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHh
Confidence 888885444 4444444444333 4666777777766665443
No 29
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.02 E-value=0.0028 Score=64.46 Aligned_cols=88 Identities=18% Similarity=0.159 Sum_probs=46.2
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCCe
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERK 684 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~~ 684 (741)
-++++||+||||||+++.|...+........+..=+|.........+.+....-.+....+...++.+-.. .+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~------~pd 76 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQ------DPD 76 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcC------CcC
Confidence 47899999999999999988876532111111122232221111111111000112223456666654321 457
Q ss_pred EEEEcCCCChhhhh
Q psy17620 685 YILFDGDVDALWIE 698 (741)
Q Consensus 685 WIVfDG~vd~~wiE 698 (741)
+|++|-+-|++-++
T Consensus 77 ~ii~gEird~e~~~ 90 (198)
T cd01131 77 VILVGEMRDLETIR 90 (198)
T ss_pred EEEEcCCCCHHHHH
Confidence 99999887875443
No 30
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.00 E-value=0.0007 Score=62.75 Aligned_cols=69 Identities=17% Similarity=0.336 Sum_probs=43.1
Q ss_pred EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCCeE
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKY 685 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~~W 685 (741)
|+|+||||+|||++++.+++.++ ..++.++...+. .+..|.. ...+..+++++... ..+.-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~-----~~~~~i~~~~~~-~~~~~~~--------~~~i~~~~~~~~~~-----~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG-----FPFIEIDGSELI-SSYAGDS--------EQKIRDFFKKAKKS-----AKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT-----SEEEEEETTHHH-TSSTTHH--------HHHHHHHHHHHHHT-----STSEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcc-----cccccccccccc-ccccccc--------cccccccccccccc-----cccee
Confidence 68999999999999999999974 455666655544 2222221 11344555554322 13589
Q ss_pred EEEcCCCCh
Q psy17620 686 ILFDGDVDA 694 (741)
Q Consensus 686 IVfDG~vd~ 694 (741)
|++| ++|.
T Consensus 62 l~iD-e~d~ 69 (132)
T PF00004_consen 62 LFID-EIDK 69 (132)
T ss_dssp EEEE-TGGG
T ss_pred eeec-cchh
Confidence 9999 3443
No 31
>PRK08118 topology modulation protein; Reviewed
Probab=96.93 E-value=0.0015 Score=64.62 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.8
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-|+|+|||||||||+.+.|++.++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998863
No 32
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.86 E-value=0.009 Score=61.83 Aligned_cols=140 Identities=21% Similarity=0.312 Sum_probs=78.8
Q ss_pred HHHHHHHHhccCCCcchhh-HH-H---HHHHhhcc----ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc
Q psy17620 574 VVLMRALRDMNLPKFVSED-VV-Q---MYETMLTR----HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV 644 (741)
Q Consensus 574 ~~l~ral~~~~lPkl~~~D-v~-q---L~e~l~~r----~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~ 644 (741)
.-+-..+|--++-.++..+ +. + +.++...| ..++++||||+||||+.+++++.++ ..++..+-.++
T Consensus 12 ~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~-----~~~~~~sg~~i 86 (233)
T PF05496_consen 12 APLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG-----VNFKITSGPAI 86 (233)
T ss_dssp S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT-------EEEEECCC-
T ss_pred hhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC-----CCeEeccchhh
Confidence 3344555544455555544 21 1 33444333 3799999999999999999999874 23333332121
Q ss_pred ccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCce-eeccCC---Cee
Q psy17620 645 SVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKI-LTLANG---ERI 718 (741)
Q Consensus 645 t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~-L~L~nG---eri 718 (741)
. +-|=+..++..+. .+..+..| --+...--|.|-+.|+|.++ +.+.-| ..+
T Consensus 87 ~---------------k~~dl~~il~~l~--------~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~ 143 (233)
T PF05496_consen 87 E---------------KAGDLAAILTNLK--------EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSI 143 (233)
T ss_dssp ----------------SCHHHHHHHHT----------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEE
T ss_pred h---------------hHHHHHHHHHhcC--------CCcEEEEechhhccHHHHHHHHHHhccCeEEEEecccccccee
Confidence 1 0122445554331 34688888 44678888999999998876 555544 344
Q ss_pred ecC-CCceEEEEeCCCCCCCCCCC
Q psy17620 719 RLL-AHCQLLFEIHPIQSDSHPRR 741 (741)
Q Consensus 719 ~l~-~~~rliFE~~~L~~aSPAt~ 741 (741)
.++ |++.+|=-|+.....|+.-|
T Consensus 144 ~~~l~~FTligATTr~g~ls~pLr 167 (233)
T PF05496_consen 144 RINLPPFTLIGATTRAGLLSSPLR 167 (233)
T ss_dssp EEE----EEEEEESSGCCTSHCCC
T ss_pred eccCCCceEeeeeccccccchhHH
Confidence 443 45899999988887776543
No 33
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.84 E-value=0.00092 Score=68.23 Aligned_cols=112 Identities=20% Similarity=0.285 Sum_probs=72.9
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhccCCC----------------------CeEEEEeCCCccccccccccccCCCC
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGY----------------------PARTYTLNPKAVSVIELYGVLNPETR 658 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~----------------------~~~~~~inpka~t~~eLyG~~d~~t~ 658 (741)
.-.|+++++||||+|||++.+.+...+-.+.. ...-++--+.+.|...|.|.- .
T Consensus 20 aG~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg----~ 95 (206)
T PF01078_consen 20 AGGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGG----R 95 (206)
T ss_dssp HCC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEG----G
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCC----c
Confidence 35899999999999999999999987644310 011233445566667777763 2
Q ss_pred CcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEE
Q psy17620 659 DWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFE 729 (741)
Q Consensus 659 eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE 729 (741)
..+.|.++.+ .+-.+.+| ...++..+|.|-..|++.++-.-..|..+..|-++-++--
T Consensus 96 ~~~PGeislA-------------h~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a 155 (206)
T PF01078_consen 96 PPRPGEISLA-------------HRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAA 155 (206)
T ss_dssp GEEE-CGGGG-------------TTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEE
T ss_pred CCCcCHHHHh-------------cCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEE
Confidence 4566766542 45689999 7789999999999999987766668888998888766654
No 34
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.82 E-value=0.015 Score=62.31 Aligned_cols=132 Identities=21% Similarity=0.255 Sum_probs=78.0
Q ss_pred eeecccccCChhhHHHHHHH-HHHHHHHHhhcCceeEeecceEEecCCceEEEeccCCCCCCCCchHHHhhcceeeeccC
Q psy17620 425 GCFDEFNRIDVSVLSVISTQ-LLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIV 503 (741)
Q Consensus 425 ~cfDEfnrl~~~vLSvva~q-i~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNpgy~gr~eLP~nLk~lFRpvam~~ 503 (741)
..+|++|.-..+-=. +|+ ++-+++-+.. ..-+.....+..--.++.+..+|||+ +||..+|.-|...|+-+++..
T Consensus 104 ~fiDDlN~p~~d~yg--tq~~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~-~Gr~~is~R~~r~f~i~~~~~ 179 (272)
T PF12775_consen 104 LFIDDLNMPQPDKYG--TQPPIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPT-GGRNPISPRFLRHFNILNIPY 179 (272)
T ss_dssp EEEETTT-S---TTS----HHHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESST-TT--SHHHHHHTTEEEEE---
T ss_pred EEecccCCCCCCCCC--CcCHHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCC-CCCCCCChHHhhheEEEEecC
Confidence 446999987766422 222 3334444432 23222222233333467788999995 489999999999999999999
Q ss_pred CCHH---HH----HHHHHhhcCccc-----hHHHHHHHHHHHHHHHHHhhc---CCccccchhhHHHHHHHh
Q psy17620 504 PDFE---LI----CQIMLFSEGFLE-----AKVLAKKMAVLYKLSKEQLSK---QCHYDFGMRALKSVLVMA 560 (741)
Q Consensus 504 PD~~---~I----~ei~L~s~GF~~-----a~~La~Kl~~l~~l~~e~ls~---q~hydfgLRalksVL~~a 560 (741)
|+-+ .| .+..|...+|.. +..+....+.+|+.+++.+-+ ..||-|.||.+-.|+.-.
T Consensus 180 p~~~sl~~If~~il~~~l~~~~f~~~v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~FnlRDlsrv~qGi 251 (272)
T PF12775_consen 180 PSDESLNTIFSSILQSHLKNGGFPEDVQKLADKLVQATIELYQKIRQQFLPTPSKPHYTFNLRDLSRVFQGI 251 (272)
T ss_dssp -TCCHHHHHHHHHHHHHTCHTTSSGGGCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTSHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHHhhhcccCCCCccceeeccHHHHHHHHHHH
Confidence 9764 33 333344456743 566777778889988887743 479999999998887654
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.80 E-value=0.046 Score=66.48 Aligned_cols=68 Identities=22% Similarity=0.386 Sum_probs=42.3
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK 681 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~ 681 (741)
..+|++|+||||||||++.+.++..++ . ....+++ .++++.+--. ....+..+++.+.. .
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~---~--~fi~v~~-----~~l~~~~vGe----se~~i~~~f~~A~~------~ 545 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESG---A--NFIAVRG-----PEILSKWVGE----SEKAIREIFRKARQ------A 545 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcC---C--CEEEEeh-----HHHhhcccCc----HHHHHHHHHHHHHh------c
Confidence 356899999999999999999998763 2 2333332 2343332111 12245666665533 2
Q ss_pred CCeEEEEc
Q psy17620 682 ERKYILFD 689 (741)
Q Consensus 682 ~~~WIVfD 689 (741)
.+..|+||
T Consensus 546 ~p~iifiD 553 (733)
T TIGR01243 546 APAIIFFD 553 (733)
T ss_pred CCEEEEEE
Confidence 45789999
No 36
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.79 E-value=0.14 Score=59.16 Aligned_cols=112 Identities=23% Similarity=0.293 Sum_probs=65.1
Q ss_pred ceeccchhHHHHHHHHHHHcccCCC-------------CC-----CCCHHHHHHHHHHhhhc-CcceeecccccC--Chh
Q psy17620 378 LVITPLTDRIYLTITQALSMRLGAA-------------PA-----GMDFLAFGKILSGLSQC-GAWGCFDEFNRI--DVS 436 (741)
Q Consensus 378 LViTPLTdRc~~tl~~Al~~~~GGa-------------p~-----~~d~~~~~ri~~Glaq~-GaW~cfDEfnrl--~~~ 436 (741)
.|.|+.-+|+-..+.++-....+.. |. .-++...-+.+....+. .+-..|.+|++. +..
T Consensus 19 ~i~t~ee~r~~~~~~~~~~~~~~~~~~~W~~~~G~~~~~~~~~~~~~~p~~al~~i~~~~~~~~~~~vl~d~h~~~~~~~ 98 (489)
T CHL00195 19 YINTIEEDRLEYIIRKSIKLNLNRSIYSWDFVDGYTNNPNDNGFAKRNPLQALEFIEKLTPETPALFLLKDFNRFLNDIS 98 (489)
T ss_pred EEecCCHHHHHHHHHHHHHhcCCCceEEEeccCCCccCCCccCcccccHHHHHHHHHhcCCCCCcEEEEecchhhhcchH
Confidence 4567788888877766654221111 11 12444444566666542 357778888887 333
Q ss_pred hHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccCCCCCCCCchHHHhhcceeeeccCCCHHHHHHHH
Q psy17620 437 VLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIM 513 (741)
Q Consensus 437 vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNpgy~gr~eLP~nLk~lFRpvam~~PD~~~I~ei~ 513 (741)
+...++.+....+.. +.+-|+++ | .-++|+.|..++..+.+.-||.+-|.+++
T Consensus 99 ----~~r~l~~l~~~~~~~--------------~~~~i~~~--~----~~~~p~el~~~~~~~~~~lP~~~ei~~~l 151 (489)
T CHL00195 99 ----ISRKLRNLSRILKTQ--------------PKTIIIIA--S----ELNIPKELKDLITVLEFPLPTESEIKKEL 151 (489)
T ss_pred ----HHHHHHHHHHHHHhC--------------CCEEEEEc--C----CCCCCHHHHhceeEEeecCcCHHHHHHHH
Confidence 334444443333332 22223333 2 35899999999999999999988776553
No 37
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.69 E-value=0.0021 Score=70.60 Aligned_cols=113 Identities=23% Similarity=0.333 Sum_probs=75.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccC----CCCeE-----------------------EEEeCCCccccccccccccCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVL----GYPAR-----------------------TYTLNPKAVSVIELYGVLNPE 656 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~----~~~~~-----------------------~~~inpka~t~~eLyG~~d~~ 656 (741)
|++++.|+||+|||++.+.+++.+..+ +.++. -.+-=|-..|.+.|+|.+|-+
T Consensus 30 ~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~ 109 (334)
T PRK13407 30 GGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIE 109 (334)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhh
Confidence 789999999999999999999998432 11000 001134556778899987754
Q ss_pred ----CC--CcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEE
Q psy17620 657 ----TR--DWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLF 728 (741)
Q Consensus 657 ----t~--eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliF 728 (741)
++ .++.|.+.. .++--+++| ..+++.-.+.|-.+|++.....-..|.....|..+.++.
T Consensus 110 ~~l~~g~~~~~~G~l~~-------------A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviA 176 (334)
T PRK13407 110 RALTRGEKAFEPGLLAR-------------ANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVG 176 (334)
T ss_pred hhhhcCCeeecCCceEE-------------cCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEe
Confidence 22 356665421 123468888 457888888888888887765556777777777665554
Q ss_pred E
Q psy17620 729 E 729 (741)
Q Consensus 729 E 729 (741)
-
T Consensus 177 t 177 (334)
T PRK13407 177 S 177 (334)
T ss_pred c
Confidence 3
No 38
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.55 E-value=0.01 Score=72.97 Aligned_cols=114 Identities=23% Similarity=0.246 Sum_probs=76.4
Q ss_pred EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC----CccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP----KAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK 681 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp----ka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~ 681 (741)
++++||||+|||.+.+.|++.+-.- .-.+.++|- ...+...|.|.--.--+.=..|.++..+|+ .
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~---------~ 667 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRR---------K 667 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHh---------C
Confidence 7999999999999999999987321 123334432 223445565542000011146899988885 2
Q ss_pred CCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCC
Q psy17620 682 ERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPI 733 (741)
Q Consensus 682 ~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L 733 (741)
...-|+|| ..++|...+.|-.++|+. .|+-+.|..+.+.+ .-+|+ |+|+
T Consensus 668 p~svvllDEieka~~~v~~~Llq~ld~g-~l~d~~Gr~vd~~n-~iiI~-TSNl 718 (852)
T TIGR03345 668 PYSVVLLDEVEKAHPDVLELFYQVFDKG-VMEDGEGREIDFKN-TVILL-TSNA 718 (852)
T ss_pred CCcEEEEechhhcCHHHHHHHHHHhhcc-eeecCCCcEEeccc-cEEEE-eCCC
Confidence 34699999 678888888888999886 56888999888875 34444 4454
No 39
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.54 E-value=0.01 Score=64.58 Aligned_cols=37 Identities=22% Similarity=0.408 Sum_probs=29.3
Q ss_pred HHHHHHHhhccc--eEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 593 VVQMYETMLTRH--STMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 593 v~qL~e~l~~r~--gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
+.+|.+.+.... .++++||||+|||++.+.+++.+..
T Consensus 24 ~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 24 VERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 445556555554 7999999999999999999998753
No 40
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.52 E-value=0.0062 Score=68.69 Aligned_cols=114 Identities=13% Similarity=0.325 Sum_probs=62.9
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE 682 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~ 682 (741)
...++|+||||+|||++.+.|++.++ .+ ...++...++...+.|. | ..++++.+++...-... ...
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~---~p--f~~~da~~L~~~gyvG~-d------~e~~L~~~~~~~~~~l~--~a~ 181 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILN---VP--FAIADATTLTEAGYVGE-D------VENILLKLLQAADYDVE--KAQ 181 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcC---CC--eEEechhhccccccccc-c------HHHHHHHHHHhCcccHH--hcc
Confidence 46899999999999999999998763 23 33344333333333333 1 24667777764321111 123
Q ss_pred CeEEEEcCC--CCh--------------hhhhhccccccCCceeec-cCC-CeeecCCCceEEEEeCCC
Q psy17620 683 RKYILFDGD--VDA--------------LWIENMNSVMDDNKILTL-ANG-ERIRLLAHCQLLFEIHPI 733 (741)
Q Consensus 683 ~~WIVfDG~--vd~--------------~wiE~LNsvLDdnk~L~L-~nG-eri~l~~~~rliFE~~~L 733 (741)
+-.|+||.- +.+ ..-..|..+|| .....+ +.| .+.+. .-.+++-|+|+
T Consensus 182 ~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLe-G~~~~v~~~~gr~~~~--~~~i~i~TsNi 247 (413)
T TIGR00382 182 KGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIE-GTVANVPPQGGRKHPY--QEFIQIDTSNI 247 (413)
T ss_pred cceEEecccchhchhhccccccccccchhHHHHHHHHhh-ccceecccCCCccccC--CCeEEEEcCCc
Confidence 457888843 222 24445667774 444333 233 33322 33455556665
No 41
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.48 E-value=0.0027 Score=57.99 Aligned_cols=41 Identities=24% Similarity=0.428 Sum_probs=31.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS 645 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t 645 (741)
.+.++|+||||||||++.+.++..+...+ ..+..+++....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEcc
Confidence 46799999999999999999998876543 235556555544
No 42
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.46 E-value=0.0023 Score=67.22 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.4
Q ss_pred EEEEecCCCChhHHHHHHHHHhccCCC
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVLGY 632 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~~~ 632 (741)
|+++|+|||||||+.+.|++.+...+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~ 28 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNI 28 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 789999999999999999998865443
No 43
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.42 E-value=0.0026 Score=58.56 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.8
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.|+|+|||||||||+.+.|++.++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 378999999999999999999873
No 44
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.41 E-value=0.0053 Score=67.57 Aligned_cols=112 Identities=22% Similarity=0.290 Sum_probs=70.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccC----CCCeEE-------------------------------EEeCCCccccc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVL----GYPART-------------------------------YTLNPKAVSVI 647 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~----~~~~~~-------------------------------~~inpka~t~~ 647 (741)
..+|+|.|++|+||||+.+++++.+... +.+..+ .. =|-.++.+
T Consensus 25 ~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-lP~~~t~d 103 (337)
T TIGR02030 25 IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVD-LPLGATED 103 (337)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCC-CCCCCccc
Confidence 5679999999999999999999887321 111110 11 23445567
Q ss_pred cccccccCC----CC--CcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeee
Q psy17620 648 ELYGVLNPE----TR--DWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIR 719 (741)
Q Consensus 648 eLyG~~d~~----t~--eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~ 719 (741)
.|+|..|.. ++ .++.|++.. .++-.+++| ..+++.-...|-.+|+++..-.-..|....
T Consensus 104 ~l~G~~d~~~~l~~g~~~~~~GlL~~-------------A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~ 170 (337)
T TIGR02030 104 RVCGTLDIERALTEGVKAFEPGLLAR-------------ANRGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIR 170 (337)
T ss_pred ceecchhHhhHhhcCCEEeecCccee-------------ccCCEEEecChHhCCHHHHHHHHHHHHhCCeEEEECCEEEE
Confidence 889988732 22 345565431 234688999 557787777777788776443344566666
Q ss_pred cCCCceEEE
Q psy17620 720 LLAHCQLLF 728 (741)
Q Consensus 720 l~~~~rliF 728 (741)
.+..+.++-
T Consensus 171 ~~~r~ivia 179 (337)
T TIGR02030 171 HPARFVLVG 179 (337)
T ss_pred cCCCEEEEe
Confidence 665443333
No 45
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.34 E-value=0.0032 Score=63.19 Aligned_cols=46 Identities=28% Similarity=0.317 Sum_probs=33.1
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccccccc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELY 650 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLy 650 (741)
.-|.+.|++||||||..+.|++.++..|..+. ..-.|..-...+++
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~-~~~~~~~~~~~~~i 49 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVL-FTREPGGTPIGEKI 49 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE-EEeCCCCChHHHHH
Confidence 34889999999999999999999987666553 33445443334433
No 46
>PRK07261 topology modulation protein; Provisional
Probab=96.27 E-value=0.0075 Score=59.87 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEEecCCCChhHHHHHHHHHh
Q psy17620 606 TMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~ 627 (741)
|+|+|+|||||||+.+.|++.+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998775
No 47
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.22 E-value=0.014 Score=62.84 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=49.0
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCCe
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERK 684 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~~ 684 (741)
.++++||||+|||++.+.++..+.. + ...+ +|.... .-|.+...++... ...
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~~---~--~~~~----------~~~~~~-----~~~~l~~~l~~~~--------~~~ 83 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGV---N--LKIT----------SGPALE-----KPGDLAAILTNLE--------EGD 83 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC---C--EEEe----------ccchhc-----CchhHHHHHHhcc--------cCC
Confidence 5899999999999999999887631 2 2222 222111 1123444454331 346
Q ss_pred EEEEc--CCCChhhhhhccccccCCcee
Q psy17620 685 YILFD--GDVDALWIENMNSVMDDNKIL 710 (741)
Q Consensus 685 WIVfD--G~vd~~wiE~LNsvLDdnk~L 710 (741)
.+++| -.+++...|.|.+++++.+..
T Consensus 84 vl~iDEi~~l~~~~~e~l~~~~~~~~~~ 111 (305)
T TIGR00635 84 VLFIDEIHRLSPAVEELLYPAMEDFRLD 111 (305)
T ss_pred EEEEehHhhhCHHHHHHhhHHHhhhhee
Confidence 89999 335666778888888876644
No 48
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.21 E-value=0.0099 Score=67.23 Aligned_cols=116 Identities=13% Similarity=0.289 Sum_probs=62.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK 681 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~ 681 (741)
....++++||||||||++.+.|++.+. .....++...++...+.|. | .+.++..+++...... ...
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~-----~pf~~id~~~l~~~gyvG~-d------~e~~l~~l~~~~~~~~--~~a 172 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARILD-----VPFAIADATTLTEAGYVGE-D------VENILLKLLQAADYDV--EKA 172 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhC-----CCceecchhhcccCCcccc-h------HHHHHHHHHHhccccH--HHc
Confidence 356899999999999999999998763 2344455544443333333 1 1234444443321111 122
Q ss_pred CCeEEEEcCC--CCh--------------hhhhhccccccCCceeecc-CCCeeecCCCceEEEEeCCC
Q psy17620 682 ERKYILFDGD--VDA--------------LWIENMNSVMDDNKILTLA-NGERIRLLAHCQLLFEIHPI 733 (741)
Q Consensus 682 ~~~WIVfDG~--vd~--------------~wiE~LNsvLDdnk~L~L~-nGeri~l~~~~rliFE~~~L 733 (741)
.+..|++|.- +++ ..-..|-.+|| ....++| +|.+.. +..-.+++-|+|+
T Consensus 173 ~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Le-g~~~~v~~~gg~~~-~~~~~~~i~t~ni 239 (412)
T PRK05342 173 QRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILE-GTVASVPPQGGRKH-PQQEFIQVDTTNI 239 (412)
T ss_pred CCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHh-cCeEEeCCCCCcCc-CCCCeEEeccCCc
Confidence 4578888821 211 13356677786 5566654 333222 2233344444444
No 49
>KOG0736|consensus
Probab=96.17 E-value=0.021 Score=67.49 Aligned_cols=28 Identities=25% Similarity=0.579 Sum_probs=24.0
Q ss_pred hhccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 600 MLTRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
+..|.||+|+||||+|||-+.|+.|--.
T Consensus 702 lrkRSGILLYGPPGTGKTLlAKAVATEc 729 (953)
T KOG0736|consen 702 LRKRSGILLYGPPGTGKTLLAKAVATEC 729 (953)
T ss_pred ccccceeEEECCCCCchHHHHHHHHhhc
Confidence 4558999999999999999999887654
No 50
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.13 E-value=0.06 Score=65.87 Aligned_cols=119 Identities=17% Similarity=0.220 Sum_probs=62.0
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc-ccccccccccCCCCCcc---cChHHHHHHHhcCCCCCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV-SVIELYGVLNPETRDWY---DGLLSNIFRAVNKPLDPG 679 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~-t~~eLyG~~d~~t~eW~---DGvls~i~R~~~~~~~~~ 679 (741)
..++++||||+|||++.+.+++++.. ....++.... +..++.|.. +.|. .|-+...++++..
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~~-----~~~~i~~~~~~~~~~i~g~~----~~~~g~~~g~i~~~l~~~~~----- 413 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALNR-----KFVRFSLGGVRDEAEIRGHR----RTYVGAMPGRIIQGLKKAKT----- 413 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcC-----CeEEEeCCCcccHHHHcCCC----CceeCCCCchHHHHHHHhCc-----
Confidence 36899999999999999999999742 2333433222 234455532 1222 4555566665422
Q ss_pred CCCCeEEEEcC-----C-CChhhhhhccccccC--Cceeecc-CCCeeecCCCceEEEEeCCCCCCCCC
Q psy17620 680 SKERKYILFDG-----D-VDALWIENMNSVMDD--NKILTLA-NGERIRLLAHCQLLFEIHPIQSDSHP 739 (741)
Q Consensus 680 ~~~~~WIVfDG-----~-vd~~wiE~LNsvLDd--nk~L~L~-nGeri~l~~~~rliFE~~~L~~aSPA 739 (741)
.+..|+||- + ....-...|-.+||+ |+.+.=. -|..+.++ ++-+|+-+..+....||
T Consensus 414 --~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s-~v~~I~TtN~~~~i~~~ 479 (775)
T TIGR00763 414 --KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLS-KVIFIATANSIDTIPRP 479 (775)
T ss_pred --CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccC-CEEEEEecCCchhCCHH
Confidence 223899992 1 111113445566664 3222111 12223322 44455555555555554
No 51
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.11 E-value=0.0072 Score=71.45 Aligned_cols=110 Identities=19% Similarity=0.176 Sum_probs=79.0
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCC----CC--CcccChHHHHHHHhcCCCCC
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPE----TR--DWYDGLLSNIFRAVNKPLDP 678 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~----t~--eW~DGvls~i~R~~~~~~~~ 678 (741)
+|+|.|++|+|||++.+.+++.+.. ...+..+.+ ..+.+.|+|.+|-. ++ .|+.|++..
T Consensus 18 ~vLl~G~~GtgKs~lar~l~~~~~~---~~pfv~i~~-~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~----------- 82 (589)
T TIGR02031 18 GVAIRARAGTGKTALARALAEILPP---IMPFVELPL-GVTEDRLIGGIDVEESLAGGQRVTQPGLLDE----------- 82 (589)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhCCc---CCCeEecCc-ccchhhcccchhhhhhhhcCcccCCCCCeee-----------
Confidence 7999999999999999999988643 122444554 57789999998632 12 456665532
Q ss_pred CCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCC
Q psy17620 679 GSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHP 732 (741)
Q Consensus 679 ~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~ 732 (741)
.++--+++| ..+++.-...|-.+|++...-.-..|.....|..+++|- +++
T Consensus 83 --A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIA-t~n 135 (589)
T TIGR02031 83 --APRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIA-TYD 135 (589)
T ss_pred --CCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEE-ecC
Confidence 133477888 557888888888899877654445788888888898885 444
No 52
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.09 E-value=0.0044 Score=58.60 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=21.0
Q ss_pred EEEEecCCCChhHHHHHHHHHhc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
|+++|||||||||+.+.|++.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999998763
No 53
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.06 E-value=0.024 Score=66.25 Aligned_cols=121 Identities=17% Similarity=0.235 Sum_probs=81.6
Q ss_pred HHhhccceEEEEecCCCChhHHHHHHHHHhc------cCCCCeEEEEeCCCcccc----ccccccccCC-C---CCcccC
Q psy17620 598 ETMLTRHSTMIVGPTGGGKSVVINALVKTST------VLGYPARTYTLNPKAVSV----IELYGVLNPE-T---RDWYDG 663 (741)
Q Consensus 598 e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~------~~~~~~~~~~inpka~t~----~eLyG~~d~~-t---~eW~DG 663 (741)
..-....+|+|.|++||||+.+.+.+...+. .....-....+|..+++. .+|||+-+.+ | +.-+.|
T Consensus 237 ~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~G 316 (538)
T PRK15424 237 LYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAG 316 (538)
T ss_pred HHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCC
Confidence 3445688999999999999999999988721 011223456677666653 6789975422 1 123344
Q ss_pred hHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC-CC
Q psy17620 664 LLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH-PI 733 (741)
Q Consensus 664 vls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~-~L 733 (741)
+|.. ..+--++|| |.+++..-..|-.+|++.....+.+.. ..+-++|+|+-++ ||
T Consensus 317 l~e~-------------A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~--~~~~dvRiIaat~~~L 374 (538)
T PRK15424 317 LFEI-------------AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQ--PVPVDVRVISATHCDL 374 (538)
T ss_pred chhc-------------cCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCc--eeccceEEEEecCCCH
Confidence 4421 133469999 778899999999999988777665544 4566899999764 44
No 54
>PF05729 NACHT: NACHT domain
Probab=96.04 E-value=0.016 Score=55.64 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=23.8
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLG 631 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~ 631 (741)
+-++|+|+||+|||++.+.++..+...+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 3588999999999999999998876543
No 55
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.03 E-value=0.018 Score=71.00 Aligned_cols=114 Identities=23% Similarity=0.304 Sum_probs=71.2
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC----ccccccccccccCCCCCcc-cChHHHHHHHhcCCCCCC
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK----AVSVIELYGVLNPETRDWY-DGLLSNIFRAVNKPLDPG 679 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk----a~t~~eLyG~~d~~t~eW~-DGvls~i~R~~~~~~~~~ 679 (741)
.++++||||+|||++.+.|++.+..-+.+. ..++.. ..+...|+|.- |...... .|.++..+|+
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~--i~id~se~~~~~~~~~LiG~~-pgy~g~~~~g~l~~~v~~-------- 668 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSDDAM--VRIDMSEFMEKHSVSRLVGAP-PGYVGYEEGGYLTEAVRR-------- 668 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCcE--EEEEhHHhhhhhhHHHHhCCC-CcccccchhHHHHHHHHh--------
Confidence 588999999999999999998874322232 333322 23445678753 1111122 3567766663
Q ss_pred CCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCC
Q psy17620 680 SKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPI 733 (741)
Q Consensus 680 ~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L 733 (741)
....-++|| +.+++.....|-.+||+++ ++-..|..+.+.+. +|+=|+|+
T Consensus 669 -~p~~vLllDEieka~~~v~~~Ll~ile~g~-l~d~~gr~vd~rn~--iiI~TSN~ 720 (857)
T PRK10865 669 -RPYSVILLDEVEKAHPDVFNILLQVLDDGR-LTDGQGRTVDFRNT--VVIMTSNL 720 (857)
T ss_pred -CCCCeEEEeehhhCCHHHHHHHHHHHhhCc-eecCCceEEeeccc--EEEEeCCc
Confidence 134689999 5567877777778887764 45566777776543 33335555
No 56
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.01 E-value=0.014 Score=64.57 Aligned_cols=117 Identities=22% Similarity=0.237 Sum_probs=67.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCC----CCeE-------------------------------EEEeCCCcccccc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLG----YPAR-------------------------------TYTLNPKAVSVIE 648 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~----~~~~-------------------------------~~~inpka~t~~e 648 (741)
.||+|.|++|+|||++.+.+.+.+...+ .+.. +..+ |-..+.+.
T Consensus 39 ~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-p~~~ted~ 117 (350)
T CHL00081 39 GGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQNGETIETEKIKIPMVDL-PLGATEDR 117 (350)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhcccccccceeccccceec-CCCCchhh
Confidence 4899999999999999999988765321 1111 1111 33457788
Q ss_pred ccccccCCCCCcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceE
Q psy17620 649 LYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQL 726 (741)
Q Consensus 649 LyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rl 726 (741)
|+|.+|.+. .+..|.. .++..-- ...++--+++| +.+++.-...|-.+|++...-.-..|.....|..+.+
T Consensus 118 l~G~iD~~~-al~~g~~--~~~~GlL----~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiv 190 (350)
T CHL00081 118 VCGTIDIEK-ALTEGVK--AFEPGLL----AKANRGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPARFVL 190 (350)
T ss_pred ccCcccHHH-HhhcCcc--cccCCee----eecCCCEEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEE
Confidence 999988753 3444421 1110000 12245688888 5577776666666776543222234555555554444
Q ss_pred EE
Q psy17620 727 LF 728 (741)
Q Consensus 727 iF 728 (741)
+.
T Consensus 191 ia 192 (350)
T CHL00081 191 VG 192 (350)
T ss_pred Ee
Confidence 43
No 57
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.00 E-value=0.024 Score=67.70 Aligned_cols=120 Identities=10% Similarity=0.101 Sum_probs=79.1
Q ss_pred HHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCCCCCcccChHHHHHH
Q psy17620 595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPETRDWYDGLLSNIFR 670 (741)
Q Consensus 595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~t~eW~DGvls~i~R 670 (741)
++-.......+|+|.|++||||+++.+.+......-+ -....+|..+++. .+|||+.......-.-|.|.
T Consensus 340 ~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~--~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~---- 413 (638)
T PRK11388 340 FGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAA--GPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFE---- 413 (638)
T ss_pred HHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccC--CCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCcee----
Confidence 3444556788999999999999999999988754322 2355677666653 67999873322222223221
Q ss_pred HhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620 671 AVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH 731 (741)
Q Consensus 671 ~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~ 731 (741)
....--+++| +.+++.--+.|-.+|+++....+.+... .+-++|+|+-++
T Consensus 414 ---------~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~--~~~~~riI~~t~ 465 (638)
T PRK11388 414 ---------LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRL--IPVDVRVIATTT 465 (638)
T ss_pred ---------ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCce--EEeeEEEEEecc
Confidence 1123468888 6678888888888998776666644443 344688888654
No 58
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.00 E-value=0.0066 Score=63.68 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=29.1
Q ss_pred EEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc
Q psy17620 608 IVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS 645 (741)
Q Consensus 608 lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t 645 (741)
++|||||||||..+.+.+-+...|.++.+.-++|.+-.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~ 38 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVEN 38 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcc
Confidence 68999999999999999999988888888889998764
No 59
>PRK06526 transposase; Provisional
Probab=95.95 E-value=0.0061 Score=64.52 Aligned_cols=88 Identities=14% Similarity=0.186 Sum_probs=50.6
Q ss_pred hhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCC
Q psy17620 600 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPG 679 (741)
Q Consensus 600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~ 679 (741)
+..+++++++||||+|||.+...++......|.++.+ .+..++...+.. .+.+|-+...++++.
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f-------~t~~~l~~~l~~---~~~~~~~~~~l~~l~------ 158 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF-------ATAAQWVARLAA---AHHAGRLQAELVKLG------ 158 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh-------hhHHHHHHHHHH---HHhcCcHHHHHHHhc------
Confidence 3457899999999999999999998776554544322 122222222211 123444445555442
Q ss_pred CCCCeEEEEc--C--CCChhhhhhcccccc
Q psy17620 680 SKERKYILFD--G--DVDALWIENMNSVMD 705 (741)
Q Consensus 680 ~~~~~WIVfD--G--~vd~~wiE~LNsvLD 705 (741)
....+|+| | +.++.+.+-|..+++
T Consensus 159 --~~dlLIIDD~g~~~~~~~~~~~L~~li~ 186 (254)
T PRK06526 159 --RYPLLIVDEVGYIPFEPEAANLFFQLVS 186 (254)
T ss_pred --cCCEEEEcccccCCCCHHHHHHHHHHHH
Confidence 23577888 3 234555555555554
No 60
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.95 E-value=0.012 Score=57.97 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=31.2
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 643 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka 643 (741)
.++++||||+||||+...++..+...|.++.+...++.-
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 468999999999999999999887766666666666543
No 61
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.94 E-value=0.03 Score=65.32 Aligned_cols=117 Identities=19% Similarity=0.304 Sum_probs=80.3
Q ss_pred HHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCC----CCCcccChHHHHH
Q psy17620 598 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPE----TRDWYDGLLSNIF 669 (741)
Q Consensus 598 e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~----t~eW~DGvls~i~ 669 (741)
..-....+|+|.|++||||+.+.+.+.....+-+ -....+|..+++. .+|||+-+.+ .+.-+.|+|..
T Consensus 230 ~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~--~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~-- 305 (526)
T TIGR02329 230 LYARSDATVLILGESGTGKELVAQAIHQLSGRRD--FPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEA-- 305 (526)
T ss_pred HHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCC--CCEEEeccccCChhHHHHHhcCCcccccccccccccccchhh--
Confidence 4445788999999999999999999987653322 2355677666653 5789975321 11123343321
Q ss_pred HHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620 670 RAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH 731 (741)
Q Consensus 670 R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~ 731 (741)
...--++|| +.+++..-..|-.+|.++....+.+.+ ..+-++|+|+-++
T Consensus 306 -----------A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~--~~~~dvRiIaat~ 356 (526)
T TIGR02329 306 -----------AHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTE--PVPVDVRVVAATH 356 (526)
T ss_pred -----------cCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCc--eeeecceEEeccC
Confidence 133458999 778888889999999988777775555 4456789998764
No 62
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.94 E-value=0.02 Score=62.75 Aligned_cols=107 Identities=20% Similarity=0.285 Sum_probs=62.2
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKER 683 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~ 683 (741)
+.++++||||+|||++.+.+++.++. . ...++ |.... ..|.+..+++... ..
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~~---~--~~~~~----------~~~~~-----~~~~l~~~l~~l~--------~~ 103 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMGV---N--IRITS----------GPALE-----KPGDLAAILTNLE--------EG 103 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhCC---C--eEEEe----------ccccc-----ChHHHHHHHHhcc--------cC
Confidence 47899999999999999999998742 2 11111 11100 1234555555432 34
Q ss_pred eEEEEc--CCCChhhhhhccccccCCceee-ccCCC-----eeecCCCceEEEEeCCCCCCCCC
Q psy17620 684 KYILFD--GDVDALWIENMNSVMDDNKILT-LANGE-----RIRLLAHCQLLFEIHPIQSDSHP 739 (741)
Q Consensus 684 ~WIVfD--G~vd~~wiE~LNsvLDdnk~L~-L~nGe-----ri~l~~~~rliFE~~~L~~aSPA 739 (741)
..+++| ..+.+..-|.+.+.+++.+... +.+|. ++.+|+ +.+|.-++.....+|+
T Consensus 104 ~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~-~~li~at~~~~~l~~~ 166 (328)
T PRK00080 104 DVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP-FTLIGATTRAGLLTSP 166 (328)
T ss_pred CEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCC-ceEEeecCCcccCCHH
Confidence 688998 3344555667777777765432 33322 223343 6677766665555543
No 63
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.02 Score=68.77 Aligned_cols=112 Identities=25% Similarity=0.314 Sum_probs=79.1
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC----cccccccccc----ccCCCCCcccChHHHHHHHhcCCC
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK----AVSVIELYGV----LNPETRDWYDGLLSNIFRAVNKPL 676 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk----a~t~~eLyG~----~d~~t~eW~DGvls~i~R~~~~~~ 676 (741)
+.+++||||.|||.+.+.|+..+- |-.....++|-. ..|.+.|.|. +--+ .-|.|+-.+|+
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lf--g~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGye----eGG~LTEaVRr----- 591 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALF--GDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYE----EGGQLTEAVRR----- 591 (786)
T ss_pred EEEeeCCCcccHHHHHHHHHHHhc--CCCccceeechHHHHHHHHHHHHhCCCCCCceec----cccchhHhhhc-----
Confidence 456799999999999999999974 222333444322 2344556554 2111 25799999983
Q ss_pred CCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCCC
Q psy17620 677 DPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPIQ 734 (741)
Q Consensus 677 ~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L~ 734 (741)
+...-|+|| -=++|....-|-.||||+ .||=+.|..+.+.+. +|+=|+|+.
T Consensus 592 ----~PySViLlDEIEKAHpdV~nilLQVlDdG-rLTD~~Gr~VdFrNt--iIImTSN~G 644 (786)
T COG0542 592 ----KPYSVILLDEIEKAHPDVFNLLLQVLDDG-RLTDGQGRTVDFRNT--IIIMTSNAG 644 (786)
T ss_pred ----CCCeEEEechhhhcCHHHHHHHHHHhcCC-eeecCCCCEEeccee--EEEEecccc
Confidence 356799999 336788888888999886 678889999998876 666666664
No 64
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.91 E-value=0.045 Score=60.47 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=25.4
Q ss_pred HHHHhhcc-ceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 596 MYETMLTR-HSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 596 L~e~l~~r-~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
+.+.+..+ --+++.|||||||||+++.+...+..
T Consensus 114 l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 114 LRELAERPRGLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred HHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 33444333 45679999999999999999887653
No 65
>PLN03025 replication factor C subunit; Provisional
Probab=95.91 E-value=0.039 Score=60.20 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.9
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.++++||||+|||++.+.+++.+.
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999999873
No 66
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.90 E-value=0.017 Score=66.18 Aligned_cols=124 Identities=13% Similarity=0.154 Sum_probs=71.9
Q ss_pred HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHh
Q psy17620 593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAV 672 (741)
Q Consensus 593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~ 672 (741)
+..+...+..+..|+|.||||+|||++.+.|+++...-+ +.... +-...+..+++|..+... .=.+|-+.....
T Consensus 29 I~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~--~~~fttp~DLfG~l~i~~-~~~~g~f~r~~~-- 102 (498)
T PRK13531 29 IRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYL--MTRFSTPEEVFGPLSIQA-LKDEGRYQRLTS-- 102 (498)
T ss_pred HHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHhcccC-cceee--eeeecCcHHhcCcHHHhh-hhhcCchhhhcC--
Confidence 445667778899999999999999999999999875322 21111 111113469999752100 001233321111
Q ss_pred cCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620 673 NKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH 731 (741)
Q Consensus 673 ~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~ 731 (741)
+.-....-+++| +...+.--..|-.+|.+. ..+. .|+..++|. ++|+=.+
T Consensus 103 -----G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er-~~t~-g~~~~~lp~--rfiv~AT 154 (498)
T PRK13531 103 -----GYLPEAEIVFLDEIWKAGPAILNTLLTAINER-RFRN-GAHEEKIPM--RLLVTAS 154 (498)
T ss_pred -----CccccccEEeecccccCCHHHHHHHHHHHHhC-eEec-CCeEEeCCC--cEEEEEC
Confidence 101123488889 667777766676777554 3443 566677664 4544443
No 67
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.89 E-value=0.026 Score=67.49 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=25.4
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
..|.++++||+|+||||+.+.|++.+..
T Consensus 37 L~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 37 LHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3789999999999999999999999863
No 68
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.85 E-value=0.019 Score=57.37 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=25.7
Q ss_pred EEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVLGYPART 636 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~ 636 (741)
|.|.|+|||||||+.+.|++.+...|.++.+
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~ 32 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVV 32 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 6799999999999999999998765554443
No 69
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.80 E-value=0.023 Score=63.88 Aligned_cols=28 Identities=29% Similarity=0.536 Sum_probs=25.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
..|++++.||+|+|||++.+.+++++..
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4689999999999999999999998743
No 70
>PRK06762 hypothetical protein; Provisional
Probab=95.77 E-value=0.013 Score=57.23 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=27.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS 645 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t 645 (741)
.-|+++|+|||||||+.+.|++.+. ..+..+++..+-
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~-----~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLG-----RGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEecHHHHH
Confidence 3578999999999999999998872 134455554443
No 71
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.74 E-value=0.033 Score=58.45 Aligned_cols=123 Identities=17% Similarity=0.200 Sum_probs=64.2
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCC--CC-cccC---hHHHHHH---Hhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPET--RD-WYDG---LLSNIFR---AVN 673 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t--~e-W~DG---vls~i~R---~~~ 673 (741)
-..++++|++|||||+++..|...+... --.++.+-| ....++|+++-|+- .. =.|+ .+..... +..
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~--f~~I~l~t~--~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~ 88 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHK--FDHIFLITP--EYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYI 88 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhccc--CCEEEEEec--CCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHh
Confidence 3478899999999999999887765432 133455555 33355666553321 00 0122 2222222 111
Q ss_pred C-CCCCCCCCCeEEEEcCCCChhhhhhccccccCCcee-eccCCCeeecCCCceEEEEeCCCCCCCCCCC
Q psy17620 674 K-PLDPGSKERKYILFDGDVDALWIENMNSVMDDNKIL-TLANGERIRLLAHCQLLFEIHPIQSDSHPRR 741 (741)
Q Consensus 674 ~-~~~~~~~~~~WIVfDG~vd~~wiE~LNsvLDdnk~L-~L~nGeri~l~~~~rliFE~~~L~~aSPAt~ 741 (741)
. ........+.-||||--.+. . + -++... .+.+|... ++.++|=+++-.+..|.+|
T Consensus 89 ~k~~~~k~~~~~LiIlDD~~~~-~---~----k~~~l~~~~~~gRH~----~is~i~l~Q~~~~lp~~iR 146 (241)
T PF04665_consen 89 KKSPQKKNNPRFLIILDDLGDK-K---L----KSKILRQFFNNGRHY----NISIIFLSQSYFHLPPNIR 146 (241)
T ss_pred hhhcccCCCCCeEEEEeCCCCc-h---h----hhHHHHHHHhccccc----ceEEEEEeeecccCCHHHh
Confidence 1 11111245789999943331 1 1 111011 12356544 4678888888877777766
No 72
>PRK08233 hypothetical protein; Provisional
Probab=95.74 E-value=0.013 Score=57.82 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.9
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-|.|.|+|||||||+.+.|++.+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3567889999999999999999874
No 73
>PRK08181 transposase; Validated
Probab=95.73 E-value=0.086 Score=56.36 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=29.3
Q ss_pred hhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620 600 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPART 636 (741)
Q Consensus 600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~ 636 (741)
...+.+++++||||+|||.+...++......|..+.+
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f 139 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLF 139 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceee
Confidence 4567789999999999999999999876555555433
No 74
>PF13173 AAA_14: AAA domain
Probab=95.72 E-value=0.018 Score=54.07 Aligned_cols=86 Identities=23% Similarity=0.363 Sum_probs=51.5
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK 681 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~ 681 (741)
++..++|.||.|+||||+++.+++.+. .+-.+..+|-.... ..+..+ .+ +...+++... .
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~---~~~~~~------~~--~~~~~~~~~~------~ 60 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPR---DRRLAD------PD--LLEYFLELIK------P 60 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHH---HHHHhh------hh--hHHHHHHhhc------c
Confidence 367899999999999999999987753 11122222211111 011111 11 3344443311 2
Q ss_pred CCeEEEEc-CCCChhhhhhccccccCC
Q psy17620 682 ERKYILFD-GDVDALWIENMNSVMDDN 707 (741)
Q Consensus 682 ~~~WIVfD-G~vd~~wiE~LNsvLDdn 707 (741)
...+|++| -.--|.|.+.++.+.|+.
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~ 87 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNG 87 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhc
Confidence 56899999 334578999999999965
No 75
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=95.65 E-value=0.029 Score=64.99 Aligned_cols=117 Identities=18% Similarity=0.233 Sum_probs=74.4
Q ss_pred HhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeE----------------------EEEeCCCccccccccccccCC
Q psy17620 599 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPAR----------------------TYTLNPKAVSVIELYGVLNPE 656 (741)
Q Consensus 599 ~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~----------------------~~~inpka~t~~eLyG~~d~~ 656 (741)
.....|.++++||||||||++.+.+...+..+..... .++--+.+.+...++|.-
T Consensus 207 aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg--- 283 (499)
T TIGR00368 207 AAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGG--- 283 (499)
T ss_pred hccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCc---
Confidence 3445788999999999999999999876543321100 001111223333444421
Q ss_pred CCCcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCC
Q psy17620 657 TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHP 732 (741)
Q Consensus 657 t~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~ 732 (741)
...+.|.++. ..+-.+++| -.+++.-.+.|...|++..+-.-..|-.+..|.++++|.-++.
T Consensus 284 -~~~~pG~i~l-------------A~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Np 347 (499)
T TIGR00368 284 -PIPLPGEISL-------------AHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNP 347 (499)
T ss_pred -cccchhhhhc-------------cCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCC
Confidence 1124454421 234588889 4468888999999999876544456666778999999998764
No 76
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.65 E-value=0.036 Score=52.72 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=23.4
Q ss_pred EEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVLGYPA 634 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~ 634 (741)
++|+||||+|||++.+.++......+.++
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v 30 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKV 30 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEE
Confidence 68999999999999999988775544443
No 77
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.65 E-value=0.011 Score=61.78 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=26.9
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEE
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTY 637 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~ 637 (741)
...++|+||+|||||++.+.++......|..+.+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~ 79 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYV 79 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 35899999999999999999998765444444333
No 78
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.64 E-value=0.019 Score=67.80 Aligned_cols=126 Identities=18% Similarity=0.306 Sum_probs=66.2
Q ss_pred HHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEE-EEeCC-----Cc--cc---cccccccccCCCCCcccCh-
Q psy17620 597 YETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPART-YTLNP-----KA--VS---VIELYGVLNPETRDWYDGL- 664 (741)
Q Consensus 597 ~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~-~~inp-----ka--~t---~~eLyG~~d~~t~eW~DGv- 664 (741)
++.-+..|..+++||+|+||||+.+.|++++...+..... ....| .+ +. ..+++ .+|+.+ .-|+
T Consensus 32 l~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDvi-EIdAas---~~gVD 107 (700)
T PRK12323 32 LEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYI-EMDAAS---NRGVD 107 (700)
T ss_pred HHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcce-Eecccc---cCCHH
Confidence 3333457899999999999999999999998642100000 00000 00 00 01111 223321 1222
Q ss_pred -HHHHHHHhcCCCCCCCCCCeEEEEcCCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCCCCCCCC
Q psy17620 665 -LSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPIQSDSHP 739 (741)
Q Consensus 665 -ls~i~R~~~~~~~~~~~~~~WIVfDG~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L~~aSPA 739 (741)
+..++...... ......|.+|+| ++|..=.+..|.+|- +| | .-|+++.|||-+++.....|.
T Consensus 108 dIReLie~~~~~--P~~gr~KViIID-Eah~Ls~~AaNALLK-----TL---E--EPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 108 EMAQLLDKAVYA--PTAGRFKVYMID-EVHMLTNHAFNAMLK-----TL---E--EPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred HHHHHHHHHHhc--hhcCCceEEEEE-ChHhcCHHHHHHHHH-----hh---c--cCCCCceEEEEeCChHhhhhH
Confidence 22223222111 113467899999 355544466676652 11 1 135678888888887766543
No 79
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.59 E-value=0.01 Score=54.57 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.8
Q ss_pred EEEEecCCCChhHHHHHHHHHh
Q psy17620 606 TMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~ 627 (741)
|+|.|+|||||||+.+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999985
No 80
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.55 E-value=0.055 Score=57.62 Aligned_cols=37 Identities=19% Similarity=0.408 Sum_probs=28.2
Q ss_pred HHHHHHHhhccce-EEEEecCCCChhHHHHHHHHHhcc
Q psy17620 593 VVQMYETMLTRHS-TMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 593 v~qL~e~l~~r~g-v~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
+..|.+++...+| |++.||+||||||+++.+...+..
T Consensus 69 ~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 69 LEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 3445566655555 789999999999999998877643
No 81
>COG3911 Predicted ATPase [General function prediction only]
Probab=95.54 E-value=0.011 Score=57.11 Aligned_cols=83 Identities=19% Similarity=0.322 Sum_probs=47.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCccc-ChHHHHHHHhcCCCCCCCCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYD-GLLSNIFRAVNKPLDPGSKE 682 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~D-Gvls~i~R~~~~~~~~~~~~ 682 (741)
.-++|.|-||+||||++..|+.+=- ..+...--..+-.+..-|..+ .-|+| |.|..++-.+..........
T Consensus 10 ~~fIltGgpGaGKTtLL~aLa~~Gf-----atvee~~r~ii~~es~~gg~~---lPW~D~~afael~~~~~l~q~r~~~~ 81 (183)
T COG3911 10 KRFILTGGPGAGKTTLLAALARAGF-----ATVEEAGRDIIALESAQGGTA---LPWTDPGAFAELVGLQRLRQTRSAAV 81 (183)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHcCc-----eeeccchhhHHHHHHhcCCCc---CCccChHHHHHHHHHHHHHHhhcccc
Confidence 3678999999999999999998721 111112122233344445332 34988 45555443221110011235
Q ss_pred CeEEEEc-CCCCh
Q psy17620 683 RKYILFD-GDVDA 694 (741)
Q Consensus 683 ~~WIVfD-G~vd~ 694 (741)
.--+.|| |++|+
T Consensus 82 ~~~vFfDR~~~da 94 (183)
T COG3911 82 GGRVFFDRGPPDA 94 (183)
T ss_pred cCceeeccCcHHH
Confidence 5689999 88876
No 82
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.53 E-value=0.033 Score=54.70 Aligned_cols=101 Identities=21% Similarity=0.275 Sum_probs=58.8
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccccccccc--ccCCC--------------CCcccC--
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGV--LNPET--------------RDWYDG-- 663 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~--~d~~t--------------~eW~DG-- 663 (741)
..+-+.+.|+||+||||++.-+++.+...|.++- -.+-|+.-.-...-|+ .|-+| +-=+.|
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg-Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~ 82 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG-GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN 82 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceee-eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence 3567899999999999999999998876543210 0011111111111111 01111 111223
Q ss_pred ------hHHHHHHHhcCCCCCCCCCCeEEEEc--CCC---ChhhhhhccccccCCcee
Q psy17620 664 ------LLSNIFRAVNKPLDPGSKERKYILFD--GDV---DALWIENMNSVMDDNKIL 710 (741)
Q Consensus 664 ------vls~i~R~~~~~~~~~~~~~~WIVfD--G~v---d~~wiE~LNsvLDdnk~L 710 (741)
+...++|++.. ...-||.| ||+ .+.+.+.+..+|++.|-|
T Consensus 83 v~~le~i~~~al~rA~~-------~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpl 133 (179)
T COG1618 83 VEGLEEIAIPALRRALE-------EADVIIIDEIGPMELKSKKFREAVEEVLKSGKPL 133 (179)
T ss_pred HHHHHHHhHHHHHHHhh-------cCCEEEEecccchhhccHHHHHHHHHHhcCCCcE
Confidence 34455555543 24699999 887 678999999999776633
No 83
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.52 E-value=0.03 Score=61.53 Aligned_cols=120 Identities=19% Similarity=0.234 Sum_probs=77.7
Q ss_pred HHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCC-C--CCcccChHHH
Q psy17620 595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPE-T--RDWYDGLLSN 667 (741)
Q Consensus 595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~-t--~eW~DGvls~ 667 (741)
++........+|+|.|++||||+++.+.+.....+-+. ....+|..+++. .+|||+-... | ..-..|.+..
T Consensus 14 ~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~--pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~ 91 (329)
T TIGR02974 14 QVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQG--PLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFER 91 (329)
T ss_pred HHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCC--CeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhh
Confidence 45555667889999999999999999998876543322 345566665543 5678864211 0 1122343321
Q ss_pred HHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620 668 IFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH 731 (741)
Q Consensus 668 i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~ 731 (741)
...--+++| +.+++..-..|-.+|++...-.+.+.. ..+.++|+|+-++
T Consensus 92 -------------a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~--~~~~~~RiI~at~ 142 (329)
T TIGR02974 92 -------------ADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQ--TLQVDVRLVCATN 142 (329)
T ss_pred -------------CCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCc--eeccceEEEEech
Confidence 233568899 567888888888888887655554333 4567799999774
No 84
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.50 E-value=0.044 Score=64.92 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=26.2
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
...|..++.||+|+||||+.+.|++++..
T Consensus 36 rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 36 RLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45688999999999999999999999864
No 85
>KOG1533|consensus
Probab=95.50 E-value=0.012 Score=60.87 Aligned_cols=41 Identities=27% Similarity=0.557 Sum_probs=35.8
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV 644 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~ 644 (741)
-|.+++|||||||||-..-..+.++.+|+++-+.-++|.--
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd 43 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPAND 43 (290)
T ss_pred cceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCccc
Confidence 47899999999999999999999999999888888887643
No 86
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.48 E-value=0.073 Score=57.35 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+.++++||+|+|||++.+.+++.+.
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3589999999999999999998864
No 87
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.45 E-value=0.065 Score=62.36 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=26.3
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
...|..+++||+|+||||+.+.+++++..
T Consensus 36 ~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 36 YLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45788999999999999999999999864
No 88
>PRK13808 adenylate kinase; Provisional
Probab=95.44 E-value=0.023 Score=62.31 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=21.3
Q ss_pred EEEEecCCCChhHHHHHHHHHhc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
|+|+|||||||||.-+.|++.++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~yg 25 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYG 25 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998864
No 89
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.43 E-value=0.12 Score=60.55 Aligned_cols=125 Identities=15% Similarity=0.223 Sum_probs=72.1
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccC-----CCCeEEEEeCCCcc--c----ccccccccc-CCCC-----------C
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVL-----GYPARTYTLNPKAV--S----VIELYGVLN-PETR-----------D 659 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~-----~~~~~~~~inpka~--t----~~eLyG~~d-~~t~-----------e 659 (741)
.+.|+|+||||+|||++.+.+.+...+. +..-....+|..+. + .+.++|+.+ |... +
T Consensus 86 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~ 165 (531)
T TIGR02902 86 PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQ 165 (531)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCccc
Confidence 4689999999999999999987643221 11123344554321 1 235566532 2100 0
Q ss_pred cccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeec-----cCCCe----------eecCC
Q psy17620 660 WYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTL-----ANGER----------IRLLA 722 (741)
Q Consensus 660 W~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L-----~nGer----------i~l~~ 722 (741)
=+.|.++ ...+.-+++| +.+++...+.|-.+|+|.+...- ++++. -..|.
T Consensus 166 ~~~G~l~-------------~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (531)
T TIGR02902 166 PKPGAVT-------------RAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPA 232 (531)
T ss_pred ccCchhh-------------ccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCccc
Confidence 0112111 2345789999 67888888888888877654432 11111 13466
Q ss_pred CceEEEEeC-CCCCCCCCC
Q psy17620 723 HCQLLFEIH-PIQSDSHPR 740 (741)
Q Consensus 723 ~~rliFE~~-~L~~aSPAt 740 (741)
++|+|+-|+ ++....||-
T Consensus 233 d~rlI~ATt~~p~~L~paL 251 (531)
T TIGR02902 233 DFRLIGATTRNPEEIPPAL 251 (531)
T ss_pred ceEEEEEecCCcccCChHH
Confidence 788888765 566666664
No 90
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.38 E-value=0.0071 Score=61.35 Aligned_cols=85 Identities=18% Similarity=0.298 Sum_probs=46.5
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccc-----ccccc--------ccCCCCCcccChHHHH
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI-----ELYGV--------LNPETRDWYDGLLSNI 668 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~-----eLyG~--------~d~~t~eW~DGvls~i 668 (741)
....+++.|+||||||++++.+...+. ...+..|||..+-.. ++... ..+....|.+.++..+
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~----~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a 89 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFG----GGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYA 89 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-----TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhcc----CCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 445788999999999999999988763 234556776654321 11111 1111124666666666
Q ss_pred HHHhcCCCCCCCCCCeEEEEcCCC-Chhhhhhcc
Q psy17620 669 FRAVNKPLDPGSKERKYILFDGDV-DALWIENMN 701 (741)
Q Consensus 669 ~R~~~~~~~~~~~~~~WIVfDG~v-d~~wiE~LN 701 (741)
+. .+.=|||||.. ++.+...+-
T Consensus 90 ~~-----------~~~nii~E~tl~~~~~~~~~~ 112 (199)
T PF06414_consen 90 IE-----------NRYNIIFEGTLSNPSKLRKLI 112 (199)
T ss_dssp HH-----------CT--EEEE--TTSSHHHHHHH
T ss_pred HH-----------cCCCEEEecCCCChhHHHHHH
Confidence 65 34568889887 456766443
No 91
>PRK04195 replication factor C large subunit; Provisional
Probab=95.35 E-value=0.073 Score=61.56 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=23.3
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.++++|+||||+|||++.+.+++.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999999886
No 92
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.33 E-value=0.028 Score=60.82 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.|.++++||||+|||++.+.+++.+
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 4566679999999999999998875
No 93
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.30 E-value=0.015 Score=58.18 Aligned_cols=87 Identities=18% Similarity=0.361 Sum_probs=55.0
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCC
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGS 680 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~ 680 (741)
...+++++.||||+|||.+...++..+-..|.++.+. +..+|+..+.. .+.+|-....++++..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~-------~~~~L~~~l~~---~~~~~~~~~~~~~l~~------ 108 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI-------TASDLLDELKQ---SRSDGSYEELLKRLKR------ 108 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE-------EHHHHHHHHHC---CHCCTTHCHHHHHHHT------
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe-------ecCceeccccc---cccccchhhhcCcccc------
Confidence 4577999999999999999999988765556555443 34566666542 2456656666776643
Q ss_pred CCCeEEEEc--C--CCChhhhhhcccccc
Q psy17620 681 KERKYILFD--G--DVDALWIENMNSVMD 705 (741)
Q Consensus 681 ~~~~WIVfD--G--~vd~~wiE~LNsvLD 705 (741)
..-+|+| | +.+....+.|..++|
T Consensus 109 --~dlLilDDlG~~~~~~~~~~~l~~ii~ 135 (178)
T PF01695_consen 109 --VDLLILDDLGYEPLSEWEAELLFEIID 135 (178)
T ss_dssp --SSCEEEETCTSS---HHHHHCTHHHHH
T ss_pred --ccEecccccceeeecccccccchhhhh
Confidence 2588999 3 345556666666665
No 94
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.29 E-value=0.012 Score=60.45 Aligned_cols=26 Identities=31% Similarity=0.563 Sum_probs=21.8
Q ss_pred hccceEEEEecCCCChhHHHHHHHHH
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.....|.++|||||||||+++++..-
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34567899999999999999998753
No 95
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.27 E-value=0.088 Score=56.62 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=31.1
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccC-C-CCeEEEEeCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVL-G-YPARTYTLNP 641 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~-~-~~~~~~~inp 641 (741)
...++++||+|+||||++..|+..+... | .++.+...+|
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3468899999999999999999887654 4 5666666666
No 96
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=95.26 E-value=0.17 Score=60.37 Aligned_cols=101 Identities=17% Similarity=0.303 Sum_probs=55.2
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCC-C----CeEEEEeCCCcccc------ccccccccCCCCCcccChHHH---H
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLG-Y----PARTYTLNPKAVSV------IELYGVLNPETRDWYDGLLSN---I 668 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~-~----~~~~~~inpka~t~------~eLyG~~d~~t~eW~DGvls~---i 668 (741)
...++|+|||||||||+.+.+.+...... . ......+|...+.. ..++|... +..... .
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~-------~~~~~~a~~~ 247 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVH-------DPIYQGARRD 247 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCcc-------HHHHHHHHHH
Confidence 45699999999999999999987654321 1 12344444333221 23455431 222111 1
Q ss_pred HHHhcCCC--CC--CCCCCeEEEEc--CCCChhhhhhccccccCCcee
Q psy17620 669 FRAVNKPL--DP--GSKERKYILFD--GDVDALWIENMNSVMDDNKIL 710 (741)
Q Consensus 669 ~R~~~~~~--~~--~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L 710 (741)
+....... .+ ......-+++| +.+|+.-.+.|-.+|++.+.+
T Consensus 248 l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~ 295 (615)
T TIGR02903 248 LAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVE 295 (615)
T ss_pred HHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEE
Confidence 11111000 00 01123479999 567888888888888775543
No 97
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.25 E-value=0.014 Score=56.89 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=24.1
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....|+|+|+|||||||+-+.|++.++
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999999874
No 98
>PRK06217 hypothetical protein; Validated
Probab=95.24 E-value=0.024 Score=56.66 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.7
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-|+|.|+|||||||+.+.|++.++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 389999999999999999998863
No 99
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.22 E-value=0.027 Score=61.88 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=41.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc-ccccccc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV-SVIELYG 651 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~-t~~eLyG 651 (741)
..+.|-|.|+|||||||+++.|...+...|.++-+..++|.+. +-..+.|
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallg 105 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILG 105 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhc
Confidence 4567889999999999999999999988888899999999874 2233444
No 100
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.19 E-value=0.064 Score=58.36 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=26.9
Q ss_pred HHHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 597 YETMLTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 597 ~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..++..+..++++||+||||||+++.|.+.+.
T Consensus 138 ~~~v~~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 138 RLAIASRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred HHHhhCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 34556788999999999999999999987764
No 101
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.18 E-value=0.075 Score=58.34 Aligned_cols=121 Identities=18% Similarity=0.218 Sum_probs=75.2
Q ss_pred HHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc----cccccccccCC-CCC--cccChHH
Q psy17620 594 VQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGVLNPE-TRD--WYDGLLS 666 (741)
Q Consensus 594 ~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t----~~eLyG~~d~~-t~e--W~DGvls 666 (741)
.++........+|+|+|++||||+++.+.+......-+. ....+|..+++ ..++||.-... ++. =.-|.+
T Consensus 20 ~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~--pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l- 96 (326)
T PRK11608 20 EQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQG--PFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRF- 96 (326)
T ss_pred HHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCC--CeEEEeCCCCCHHHHHHHHccccccccCCcccccCCch-
Confidence 345566677889999999999999999998865433222 34566666665 35678754211 000 012332
Q ss_pred HHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620 667 NIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH 731 (741)
Q Consensus 667 ~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~ 731 (741)
.+ ...--+++| +.+++.--+.|-.+++++....+...+ ..+.++|+|+-++
T Consensus 97 ---~~---------a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~--~~~~~~RiI~~s~ 149 (326)
T PRK11608 97 ---ER---------ADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQ--PLQVNVRLVCATN 149 (326)
T ss_pred ---hc---------cCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCc--eeeccEEEEEeCc
Confidence 11 122357888 456777777888888887655443333 5556789998653
No 102
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.18 E-value=0.044 Score=62.29 Aligned_cols=95 Identities=22% Similarity=0.309 Sum_probs=56.3
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc--cCCCCeEEEEeCCCccc-cccc--ccccc--CCCCCcccChHHHHHHHhcCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST--VLGYPARTYTLNPKAVS-VIEL--YGVLN--PETRDWYDGLLSNIFRAVNKP 675 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~--~~~~~~~~~~inpka~t-~~eL--yG~~d--~~t~eW~DGvls~i~R~~~~~ 675 (741)
...++++||+|+||||++-.|+..+. .-|.++.+...+|.-.. .++| |+... |........=+...+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC--
Confidence 45789999999999999999988876 33456666666664211 1222 22210 0000111122344444332
Q ss_pred CCCCCCCCeEEEEcCC----CChhhhhhcccccc
Q psy17620 676 LDPGSKERKYILFDGD----VDALWIENMNSVMD 705 (741)
Q Consensus 676 ~~~~~~~~~WIVfDG~----vd~~wiE~LNsvLD 705 (741)
...+|++|.+ .|+.-++.|..+++
T Consensus 299 ------~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 299 ------DCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred ------CCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 3589999944 56677777877776
No 103
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.17 E-value=0.026 Score=62.88 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=24.7
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..|++++.||+|+||||+.+.+++.+.
T Consensus 37 ~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 37 IHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 458899999999999999999999975
No 104
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.14 E-value=0.038 Score=59.59 Aligned_cols=88 Identities=24% Similarity=0.348 Sum_probs=55.5
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhccCC-------------------CCeEEEEeCCCccccccccccccCCCCCcc
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTSTVLG-------------------YPARTYTLNPKAVSVIELYGVLNPETRDWY 661 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~-------------------~~~~~~~inpka~t~~eLyG~~d~~t~eW~ 661 (741)
...|.+++.||||+|||+....|++.+...+ .+..++.+||.......
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~------------- 88 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID------------- 88 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc-------------
Confidence 4567899999999999999999999875321 22456666665433211
Q ss_pred cChHHHHHHHhcCCCC--CCCCCCeEEEEcCCCChhhhhhccccc
Q psy17620 662 DGLLSNIFRAVNKPLD--PGSKERKYILFDGDVDALWIENMNSVM 704 (741)
Q Consensus 662 DGvls~i~R~~~~~~~--~~~~~~~WIVfDG~vd~~wiE~LNsvL 704 (741)
+....+|++..... +.....+-|++| ++|..-.+.-|.++
T Consensus 89 --i~~~~vr~~~~~~~~~~~~~~~kviiid-ead~mt~~A~nall 130 (325)
T COG0470 89 --IIVEQVRELAEFLSESPLEGGYKVVIID-EADKLTEDAANALL 130 (325)
T ss_pred --chHHHHHHHHHHhccCCCCCCceEEEeC-cHHHHhHHHHHHHH
Confidence 44555666543221 112567899999 56665555555543
No 105
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.14 E-value=0.032 Score=61.12 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=30.6
Q ss_pred HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
...|..++..+..++++|+|||||||+++.|...+
T Consensus 134 ~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 134 ASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44567777888999999999999999999999876
No 106
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.14 E-value=0.013 Score=60.85 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=22.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
..-|.|+|||||||||+++.+......
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 345889999999999999998876543
No 107
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.13 E-value=0.075 Score=62.08 Aligned_cols=119 Identities=17% Similarity=0.237 Sum_probs=74.3
Q ss_pred HHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccC---CCCCcccChHHHH
Q psy17620 596 MYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNP---ETRDWYDGLLSNI 668 (741)
Q Consensus 596 L~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~---~t~eW~DGvls~i 668 (741)
+-.......+|+|.|++||||+.+.+.+..+..+-+. ....+|..+++. .+|||+... ...+.+.|+|..
T Consensus 220 ~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~--pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~- 296 (520)
T PRK10820 220 ARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKK--PFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQ- 296 (520)
T ss_pred HHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCC--CeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhh-
Confidence 3344556789999999999999999998776433222 344567666654 478987531 112445665542
Q ss_pred HHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620 669 FRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH 731 (741)
Q Consensus 669 ~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~ 731 (741)
+ ..--+++| +.+++.--..|-.+|.++..-.+ |+.-..+.++|+|+-++
T Consensus 297 ---a---------~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~vRiI~st~ 347 (520)
T PRK10820 297 ---A---------NGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRV--GEDHEVHVDVRVICATQ 347 (520)
T ss_pred ---c---------CCCEEEEeChhhCCHHHHHHHHHHHhcCCcccC--CCCcceeeeeEEEEecC
Confidence 1 22458888 55677666677777776644333 33333455788888553
No 108
>KOG3062|consensus
Probab=95.12 E-value=0.031 Score=57.42 Aligned_cols=50 Identities=22% Similarity=0.324 Sum_probs=34.6
Q ss_pred CCcccChHHHHHHHhcCCCCCCCCCCeE----EEEcCCCChhhhhhccccccCCceee
Q psy17620 658 RDWYDGLLSNIFRAVNKPLDPGSKERKY----ILFDGDVDALWIENMNSVMDDNKILT 711 (741)
Q Consensus 658 ~eW~DGvls~i~R~~~~~~~~~~~~~~W----IVfDG~vd~~wiE~LNsvLDdnk~L~ 711 (741)
..|.|++|..++++.-++.. .++| +.+=++.++.-++.+-++|=+||-+.
T Consensus 128 ~gy~~e~le~L~~RyEeP~s----~NRWDsPLf~ll~~~~~~~~~~I~~al~~nk~~~ 181 (281)
T KOG3062|consen 128 DGYDDELLEALVQRYEEPNS----RNRWDSPLFTLLPDVITLPIDDILKALFENKPLP 181 (281)
T ss_pred CCCCHHHHHHHHHHhhCCCc----cccccCcceEEecccCCCcHHHHHHHHhcCCCCC
Confidence 34999999999999865432 3344 22334667777888888888888743
No 109
>KOG1534|consensus
Probab=95.11 E-value=0.017 Score=58.73 Aligned_cols=44 Identities=25% Similarity=0.512 Sum_probs=38.2
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS 645 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t 645 (741)
.+-++++.||+||||||-.+.+......+|+..++.-++|.+..
T Consensus 2 m~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~ 45 (273)
T KOG1534|consen 2 MRYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEH 45 (273)
T ss_pred CceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHh
Confidence 35689999999999999999999988888998888888887643
No 110
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.11 E-value=0.034 Score=60.36 Aligned_cols=36 Identities=33% Similarity=0.529 Sum_probs=30.8
Q ss_pred HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...|..++..+..++++||+||||||+.+.|.+.+.
T Consensus 122 ~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 122 RDVLREAVLARKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 344667778889999999999999999999998864
No 111
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.10 E-value=0.069 Score=59.39 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=24.9
Q ss_pred HHhh-ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 598 ETML-TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 598 e~l~-~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+.+. .+--|+++||+||||||+++.|.+.+.
T Consensus 128 ~~~~~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 128 DAIAPQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred HHHhccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3444 345688999999999999999998874
No 112
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.10 E-value=0.019 Score=48.13 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.6
Q ss_pred EEEEecCCCChhHHHHHHHHHh
Q psy17620 606 TMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~ 627 (741)
+.+.|++||||||+.+.|++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999987
No 113
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.10 E-value=0.054 Score=60.43 Aligned_cols=105 Identities=18% Similarity=0.248 Sum_probs=57.8
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhc-cCC-CCeEEEEeCCCccc-cccc--ccccc--CCCCCcccChHHHHHHHhc
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTST-VLG-YPARTYTLNPKAVS-VIEL--YGVLN--PETRDWYDGLLSNIFRAVN 673 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~-~~~-~~~~~~~inpka~t-~~eL--yG~~d--~~t~eW~DGvls~i~R~~~ 673 (741)
.....++++||+|+||||++..|+..+. ..| .++-+...++--+. .++| ||..- |....=..+-+...++++.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 3466889999999999999999998653 233 23333333332111 1122 22211 1100112223455555442
Q ss_pred CCCCCCCCCCeEEEEc----CCCChhhhhhcccccc----CCceeecc
Q psy17620 674 KPLDPGSKERKYILFD----GDVDALWIENMNSVMD----DNKILTLA 713 (741)
Q Consensus 674 ~~~~~~~~~~~WIVfD----G~vd~~wiE~LNsvLD----dnk~L~L~ 713 (741)
+...|++| .+.|....|.+..+.. ....|+|+
T Consensus 215 --------~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLs 254 (374)
T PRK14722 215 --------NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLN 254 (374)
T ss_pred --------CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEec
Confidence 34799999 3457777777766532 23467766
No 114
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.10 E-value=0.032 Score=66.28 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=42.8
Q ss_pred hccCCCcchhh-------HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620 582 DMNLPKFVSED-------VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 643 (741)
Q Consensus 582 ~~~lPkl~~~D-------v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka 643 (741)
+..+|....++ ...+..++..++.++++||||+|||++.+.+++.+..-......+..||.-
T Consensus 9 ~~~~~~~~~~~viG~~~a~~~l~~a~~~~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~ 77 (608)
T TIGR00764 9 EIPVPERLIDQVIGQEEAVEIIKKAAKQKRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPED 77 (608)
T ss_pred ccCcchhhHhhccCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCC
Confidence 44566655555 233555666778999999999999999999999886432223345666644
No 115
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.09 E-value=0.021 Score=57.31 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=28.6
Q ss_pred HHHHHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-|...+..+..++++||+||||||+++.|...+.
T Consensus 17 ~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 17 YLWLAVEARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3555666788899999999999999999998764
No 116
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.08 E-value=0.067 Score=59.78 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=31.1
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV 644 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~ 644 (741)
..++|+||||+|||++++.+.+.+...+..+.+..+|....
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 46899999999999999999987755443455666665443
No 117
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.08 E-value=0.014 Score=58.54 Aligned_cols=24 Identities=29% Similarity=0.605 Sum_probs=21.3
Q ss_pred ceEEEEecCCCChhHHHHHHHHHh
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
..++|+||+||||||+.+.|+..+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 368899999999999999998764
No 118
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.04 E-value=0.017 Score=57.23 Aligned_cols=25 Identities=28% Similarity=0.427 Sum_probs=22.0
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-|+++|||||||||+.+.|++.++
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999998763
No 119
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.03 E-value=0.1 Score=60.76 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=79.0
Q ss_pred HHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCC-CC--CcccChHHH
Q psy17620 595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPE-TR--DWYDGLLSN 667 (741)
Q Consensus 595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~-t~--eW~DGvls~ 667 (741)
++-..-....+|+|.|++||||+.+.+.+.....+.+. ....+|..+++. .+|||..... ++ .-+.|.+.
T Consensus 202 ~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~--p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~- 278 (509)
T PRK05022 202 EIEVVAASDLNVLILGETGVGKELVARAIHAASPRADK--PLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFE- 278 (509)
T ss_pred HHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCC--CeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchh-
Confidence 44455567889999999999999999999987544333 355666666653 5789865321 00 11233321
Q ss_pred HHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620 668 IFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH 731 (741)
Q Consensus 668 i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~ 731 (741)
....-.++|| +.+++.--..|-.+|+++..-.+.+.. ..+.++|+|+-++
T Consensus 279 ------------~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~--~~~~~~RiI~~t~ 330 (509)
T PRK05022 279 ------------LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDR--SLRVDVRVIAATN 330 (509)
T ss_pred ------------hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCc--ceecceEEEEecC
Confidence 1233568999 667887778888888887665554443 4455789998775
No 120
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.01 E-value=0.015 Score=60.79 Aligned_cols=26 Identities=27% Similarity=0.495 Sum_probs=22.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..-|.|+|||||||||++++++.-..
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44688999999999999999998754
No 121
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.01 E-value=0.02 Score=53.19 Aligned_cols=98 Identities=17% Similarity=0.297 Sum_probs=48.5
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccC---CCCeEE-EEeCCCccccccccccc----cCCCCC--cccChHHHHHHH
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVL---GYPART-YTLNPKAVSVIELYGVL----NPETRD--WYDGLLSNIFRA 671 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~---~~~~~~-~~inpka~t~~eLyG~~----d~~t~e--W~DGvls~i~R~ 671 (741)
.+..++|+||||+|||++++.+++.+... ..+..+ +...|...+...++..+ ...... =.+-+...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45678999999999999999999986431 002222 22223333344443332 111111 112223333333
Q ss_pred hcCCCCCCCCCCeEEEEcCC--C-Chhhhhhcccccc
Q psy17620 672 VNKPLDPGSKERKYILFDGD--V-DALWIENMNSVMD 705 (741)
Q Consensus 672 ~~~~~~~~~~~~~WIVfDG~--v-d~~wiE~LNsvLD 705 (741)
+... ...-||+|.- + +...++.|-+++|
T Consensus 83 l~~~------~~~~lviDe~~~l~~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 83 LDRR------RVVLLVIDEADHLFSDEFLEFLRSLLN 113 (131)
T ss_dssp HHHC------TEEEEEEETTHHHHTHHHHHHHHHHTC
T ss_pred HHhc------CCeEEEEeChHhcCCHHHHHHHHHHHh
Confidence 3221 2268999942 4 6667777777666
No 122
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.025 Score=64.00 Aligned_cols=118 Identities=21% Similarity=0.323 Sum_probs=78.5
Q ss_pred HHHHhhccceEEEEecCCCChhHHHHHHHHHhccC---------------C-----CC---eEEEEeCCCcccccccccc
Q psy17620 596 MYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL---------------G-----YP---ARTYTLNPKAVSVIELYGV 652 (741)
Q Consensus 596 L~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~---------------~-----~~---~~~~~inpka~t~~eLyG~ 652 (741)
|..+---.|+++++||||||||.+.+-|...+-.+ + .+ ..-++--+.+.|+..|.|.
T Consensus 191 leiAAAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGG 270 (490)
T COG0606 191 LEIAAAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSASLAALVGG 270 (490)
T ss_pred HHHHHhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCCccCCCccchHHHHhCC
Confidence 44555669999999999999999998877654322 1 11 1223344555666777666
Q ss_pred ccCCCCCcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEe
Q psy17620 653 LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEI 730 (741)
Q Consensus 653 ~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~ 730 (741)
. +.-..|-++ ..++--+.+| +......+|.|..=|.+++...=-.|-.+..|-++.+++-+
T Consensus 271 G----~~p~PGeIs-------------LAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~Am 333 (490)
T COG0606 271 G----GVPRPGEIS-------------LAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQLVAAM 333 (490)
T ss_pred C----CCCCCCcee-------------eecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhc
Confidence 5 122333222 2355688889 67777888888888887766665567778888887777754
No 123
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.00 E-value=0.017 Score=57.17 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.8
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-++|+|||||||||+.+.|+..+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999998864
No 124
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.97 E-value=0.015 Score=63.80 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=21.5
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-+.|+|||||||||+++++|.-..
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 488999999999999999998654
No 125
>PRK03839 putative kinase; Provisional
Probab=94.94 E-value=0.019 Score=57.03 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.9
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-|+|+|+|||||||+-+.|++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999874
No 126
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.94 E-value=0.019 Score=57.00 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=21.1
Q ss_pred EEEEecCCCChhHHHHHHHHHhc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
|+++|||||||||+.+.|++.++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999864
No 127
>PRK14530 adenylate kinase; Provisional
Probab=94.90 E-value=0.02 Score=58.67 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.6
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-|+|+|||||||||+.+.|++.++
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999999874
No 128
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.90 E-value=0.036 Score=56.38 Aligned_cols=39 Identities=26% Similarity=0.362 Sum_probs=29.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK 642 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk 642 (741)
+.+++|||+|+||||.+--|+..+...+.++-....+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 468999999999999999999887655666666666544
No 129
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.88 E-value=0.021 Score=54.70 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.8
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.|+|+|+|||||||+.+.|++.++
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998874
No 130
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.87 E-value=0.057 Score=65.71 Aligned_cols=26 Identities=23% Similarity=0.569 Sum_probs=23.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.+|++|+||||||||++.+.+++.+.
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~ 237 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAG 237 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhC
Confidence 46999999999999999999998763
No 131
>smart00350 MCM minichromosome maintenance proteins.
Probab=94.86 E-value=0.27 Score=57.38 Aligned_cols=86 Identities=22% Similarity=0.321 Sum_probs=59.4
Q ss_pred cCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccCCCCCC----------CCchH
Q psy17620 421 CGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGR----------TELPE 490 (741)
Q Consensus 421 ~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNpgy~gr----------~eLP~ 490 (741)
.|.-+|+||||+++.+..+.+. .++..+.-++.-.|....++..|.+.+|+||-+ |+ -.||+
T Consensus 300 ~~Gil~iDEi~~l~~~~q~~L~-------e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~-g~y~~~~~~~~n~~l~~ 371 (509)
T smart00350 300 DNGVCCIDEFDKMDDSDRTAIH-------EAMEQQTISIAKAGITTTLNARCSVLAAANPIG-GRYDPKLTPEENIDLPA 371 (509)
T ss_pred CCCEEEEechhhCCHHHHHHHH-------HHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCC-cccCCCcChhhccCCCh
Confidence 3557899999999998877763 344333223344688888999999999999954 32 28999
Q ss_pred HHhhcceeeec--cCCCHH---HHHHHHH
Q psy17620 491 SVKALFRPVVC--IVPDFE---LICQIML 514 (741)
Q Consensus 491 nLk~lFRpvam--~~PD~~---~I~ei~L 514 (741)
.|-+.|==+.. ..||.+ .|++-.+
T Consensus 372 ~lLsRFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 372 PILSRFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred HHhCceeeEEEecCCCChHHHHHHHHHHH
Confidence 99999944333 356654 4444443
No 132
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.86 E-value=0.03 Score=62.01 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=31.1
Q ss_pred HHHHhhc--cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620 596 MYETMLT--RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 643 (741)
Q Consensus 596 L~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka 643 (741)
|..++.. -++.|+.||||+||||+-+++++..+ .....+|.-.
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~-----~~f~~~sAv~ 83 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN-----AAFEALSAVT 83 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC-----CceEEecccc
Confidence 3444443 45899999999999999999999864 3455555433
No 133
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=94.83 E-value=0.029 Score=66.99 Aligned_cols=111 Identities=20% Similarity=0.236 Sum_probs=73.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccC----C--------------------------CCeEEEEeCCCccccccccccc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVL----G--------------------------YPARTYTLNPKAVSVIELYGVL 653 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~----~--------------------------~~~~~~~inpka~t~~eLyG~~ 653 (741)
.+|+|.|++|+|||++.+.|++.+-.+ | .+..+..+ |-..+...|+|..
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~-p~~~t~~~l~G~~ 104 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNL-PLGATEDRVVGSL 104 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeC-CCCCcHHHcCCcc
Confidence 689999999999999999999987311 0 01112223 4556778899987
Q ss_pred cCC----CCC--cccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCce
Q psy17620 654 NPE----TRD--WYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQ 725 (741)
Q Consensus 654 d~~----t~e--W~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~r 725 (741)
|.. +++ .+.|++.. ..+--+++| ..+++.-.+.|-.+|+++..-.-..|.....+..+.
T Consensus 105 d~~~~l~~g~~~~~~G~L~~-------------A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~ 171 (633)
T TIGR02442 105 DIERALREGEKAFQPGLLAE-------------AHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFV 171 (633)
T ss_pred cHHHHhhcCCeeecCcceee-------------cCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeE
Confidence 642 112 23443321 234578888 447888888888888877655455677777777777
Q ss_pred EEE
Q psy17620 726 LLF 728 (741)
Q Consensus 726 liF 728 (741)
+|.
T Consensus 172 lIa 174 (633)
T TIGR02442 172 LIG 174 (633)
T ss_pred EEE
Confidence 776
No 134
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.82 E-value=0.033 Score=54.94 Aligned_cols=36 Identities=31% Similarity=0.551 Sum_probs=30.8
Q ss_pred hhHHHHHHHhhccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 591 EDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 591 ~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
+.+.+|.+.+.. +.++++|+||+||||+++.|....
T Consensus 24 ~g~~~l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG-KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC-CEEEEECCCCCCHHHHHHHHHhhc
Confidence 337778888877 999999999999999999998763
No 135
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.80 E-value=0.029 Score=46.39 Aligned_cols=23 Identities=39% Similarity=0.732 Sum_probs=21.0
Q ss_pred eEEEEecCCCChhHHHHHHHHHh
Q psy17620 605 STMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
..+|.||+||||||++.++.-++
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999988776
No 136
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.78 E-value=0.023 Score=60.20 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=24.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLG 631 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~ 631 (741)
..++++||||||||++.+.+++.+..++
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 4689999999999999999999876554
No 137
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.77 E-value=0.045 Score=59.93 Aligned_cols=34 Identities=21% Similarity=0.519 Sum_probs=29.2
Q ss_pred HHHHHHhhccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 594 VQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 594 ~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.-|..++..+..++++|+|||||||+.+.|...+
T Consensus 139 ~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 139 EAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 3456677788999999999999999999999875
No 138
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.77 E-value=0.019 Score=56.01 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.7
Q ss_pred EEEEecCCCChhHHHHHHHHHhc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
++|+||+||||||+.+.|++.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 47899999999999999998864
No 139
>PRK09862 putative ATP-dependent protease; Provisional
Probab=94.76 E-value=0.041 Score=63.71 Aligned_cols=115 Identities=15% Similarity=0.217 Sum_probs=75.4
Q ss_pred hhccceEEEEecCCCChhHHHHHHHHHhccCCCCe--E--------------------EEEeCCCccccccccccccCCC
Q psy17620 600 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPA--R--------------------TYTLNPKAVSVIELYGVLNPET 657 (741)
Q Consensus 600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~--~--------------------~~~inpka~t~~eLyG~~d~~t 657 (741)
....|.++++||+|||||++.+.+...+....... . .++--|.+.|..-|+|.=
T Consensus 207 a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg---- 282 (506)
T PRK09862 207 AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGG---- 282 (506)
T ss_pred ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCC----
Confidence 34578899999999999999999987764332110 1 111122233333444431
Q ss_pred CCcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620 658 RDWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH 731 (741)
Q Consensus 658 ~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~ 731 (741)
...+.|.++. .++-.+++| ...++.-.+.|...|++...-.-..|..+..|.++++|.-+.
T Consensus 283 ~~~~pG~l~~-------------A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~N 345 (506)
T PRK09862 283 AIPGPGEISL-------------AHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMN 345 (506)
T ss_pred ceehhhHhhh-------------ccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeec
Confidence 0123343332 245689999 557888999999999988776666777788899999987665
No 140
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.73 E-value=0.095 Score=57.85 Aligned_cols=40 Identities=25% Similarity=0.269 Sum_probs=29.6
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccC----CCCeEEEEeCCCc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVL----GYPARTYTLNPKA 643 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~----~~~~~~~~inpka 643 (741)
..++|+||||+|||++++.+.+.+... +.++....+|...
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 579999999999999999998876432 2235566666544
No 141
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=94.73 E-value=0.055 Score=61.71 Aligned_cols=119 Identities=16% Similarity=0.281 Sum_probs=84.4
Q ss_pred HHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCCCCCcccChHHHHHHH-h
Q psy17620 598 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPETRDWYDGLLSNIFRA-V 672 (741)
Q Consensus 598 e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~t~eW~DGvls~i~R~-~ 672 (741)
..-.+.-.|+|.|+|||||-.+-+.+.+...+-+.| ...+|..+++. .||||+-- +-++.+ .++ .
T Consensus 159 kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~P--FVavNcaAip~~l~ESELFGhek---GAFTGA-----~~~r~ 228 (464)
T COG2204 159 KVAPSDASVLITGESGTGKELVARAIHQASPRAKGP--FIAVNCAAIPENLLESELFGHEK---GAFTGA-----ITRRI 228 (464)
T ss_pred HHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCC--ceeeecccCCHHHHHHHhhcccc---cCcCCc-----ccccC
Confidence 344668899999999999999999999887665444 45678888876 67999841 222221 111 1
Q ss_pred cCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620 673 NKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH 731 (741)
Q Consensus 673 ~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~ 731 (741)
..- +..+.--+.+| |+++..-=-.|=.||.+...-.+.+.+.|+. ++|+|--|+
T Consensus 229 G~f---E~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~v--dvRiIaaT~ 284 (464)
T COG2204 229 GRF---EQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKV--DVRIIAATN 284 (464)
T ss_pred cce---eEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccce--eeEEEeecC
Confidence 000 12344678999 8898888888889999888888877776554 788987664
No 142
>PLN02842 nucleotide kinase
Probab=94.72 E-value=0.048 Score=62.84 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.2
Q ss_pred EEEecCCCChhHHHHHHHHHhc
Q psy17620 607 MIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 607 ~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
||.|+|||||||..+.|++.++
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg 22 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFG 22 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999998874
No 143
>PRK10536 hypothetical protein; Provisional
Probab=94.72 E-value=0.059 Score=57.06 Aligned_cols=125 Identities=14% Similarity=0.207 Sum_probs=72.4
Q ss_pred HHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCC-----CCcccChHH----
Q psy17620 596 MYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPET-----RDWYDGLLS---- 666 (741)
Q Consensus 596 L~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t-----~eW~DGvls---- 666 (741)
+...+..+.-|++.||+|||||++...++...- +...+...++.-..++..+.+|++ |-+ ..|---+..
T Consensus 67 ~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l-~~~~~~kIiI~RP~v~~ge~LGfL-PG~~~eK~~p~~~pi~D~L~~ 144 (262)
T PRK10536 67 YLKAIESKQLIFATGEAGCGKTWISAAKAAEAL-IHKDVDRIIVTRPVLQADEDLGFL-PGDIAEKFAPYFRPVYDVLVR 144 (262)
T ss_pred HHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHH-hcCCeeEEEEeCCCCCchhhhCcC-CCCHHHHHHHHHHHHHHHHHH
Confidence 444566677899999999999999888877421 122355444444456778888876 322 124222211
Q ss_pred --------HHHHH-hcC-------CCCCCCCCCeEEEEc--CCCChhhhhhccccccCCce-eeccCCCeeecCC
Q psy17620 667 --------NIFRA-VNK-------PLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKI-LTLANGERIRLLA 722 (741)
Q Consensus 667 --------~i~R~-~~~-------~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~-L~L~nGeri~l~~ 722 (741)
..++. ... -.++.+-...+||+| --+++.-+..+.|-+.+|.. +.+.+-..|-+|+
T Consensus 145 ~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~~GD~~QiD~p~ 219 (262)
T PRK10536 145 RLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLPR 219 (262)
T ss_pred HhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCEEEEeCChhhccCCC
Confidence 11110 000 012334567899999 45778777777777766644 4455555555553
No 144
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.72 E-value=0.023 Score=62.75 Aligned_cols=28 Identities=29% Similarity=0.590 Sum_probs=25.4
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
.+..+.|+|||||||||+.+.|++.++.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3678999999999999999999999865
No 145
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.71 E-value=0.024 Score=51.65 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=20.0
Q ss_pred EEEEecCCCChhHHHHHHHHHh
Q psy17620 606 TMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~ 627 (741)
|+|+|++|+||||+++.|..-.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999764
No 146
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.70 E-value=0.018 Score=54.62 Aligned_cols=104 Identities=16% Similarity=0.291 Sum_probs=53.6
Q ss_pred EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccccccccc--ccCCCC--CcccChHHHHHHHhcCCCCCCCC
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGV--LNPETR--DWYDGLLSNIFRAVNKPLDPGSK 681 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~--~d~~t~--eW~DGvls~i~R~~~~~~~~~~~ 681 (741)
|+|.|+||.|||++.+.|++++. ....-....|. +...++.|. +|+.++ +|..|.+-
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~---~~f~RIq~tpd-llPsDi~G~~v~~~~~~~f~~~~GPif--------------- 62 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG---LSFKRIQFTPD-LLPSDILGFPVYDQETGEFEFRPGPIF--------------- 62 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-----EEEEE--TT---HHHHHEEEEEETTTTEEEEEE-TT----------------
T ss_pred EeeECCCccHHHHHHHHHHHHcC---CceeEEEecCC-CCcccceeeeeeccCCCeeEeecChhh---------------
Confidence 78999999999999999999974 23322223444 445777776 455443 34555321
Q ss_pred CCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620 682 ERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH 731 (741)
Q Consensus 682 ~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~ 731 (741)
..++++| .-..|.---.|-.+|.+. .+++ .|+..++|+.+.+|---.
T Consensus 63 -~~ill~DEiNrappktQsAlLeam~Er-~Vt~-~g~~~~lp~pf~ViATqN 111 (131)
T PF07726_consen 63 -TNILLADEINRAPPKTQSALLEAMEER-QVTI-DGQTYPLPDPFFVIATQN 111 (131)
T ss_dssp -SSEEEEETGGGS-HHHHHHHHHHHHHS-EEEE-TTEEEE--SS-EEEEEE-
T ss_pred -hceeeecccccCCHHHHHHHHHHHHcC-eEEe-CCEEEECCCcEEEEEecC
Confidence 2478888 445554333333334333 2232 577888888776654333
No 147
>PF13245 AAA_19: Part of AAA domain
Probab=94.70 E-value=0.047 Score=47.01 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=25.7
Q ss_pred HhhccceEEEEecCCCChh-HHHHHHHHHhccCC-CCeEEEEeCCCccc
Q psy17620 599 TMLTRHSTMIVGPTGGGKS-VVINALVKTSTVLG-YPARTYTLNPKAVS 645 (741)
Q Consensus 599 ~l~~r~gv~lvGp~gsGKT-t~~~~L~~a~~~~~-~~~~~~~inpka~t 645 (741)
.+...+.++|.|||||||| ++.+.++......+ .+-.+.++.|.--.
T Consensus 6 al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~a 54 (76)
T PF13245_consen 6 ALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAA 54 (76)
T ss_pred HHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHH
Confidence 3342344556999999999 55566555552111 13345555554433
No 148
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=94.70 E-value=0.058 Score=54.72 Aligned_cols=48 Identities=25% Similarity=0.440 Sum_probs=34.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccC--CCCeEEEEeCCCcccccccc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVL--GYPARTYTLNPKAVSVIELY 650 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~--~~~~~~~~inpka~t~~eLy 650 (741)
...++++|+||||||++++++..++-.. ...++++.++||......+.
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k~~~l~~~~ 87 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPKGSDLAPLA 87 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSCCGGGT
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCCccccchhh
Confidence 4479999999999999999988877542 35788999999966554443
No 149
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.65 E-value=0.025 Score=52.03 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.0
Q ss_pred cceEEEEecCCCChhHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALV 624 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~ 624 (741)
...+.|+|||||||||+.+++.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4679999999999999999986
No 150
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.64 E-value=0.023 Score=56.30 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=23.1
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
+...||.|-||+|+||||+++.|-.-+
T Consensus 35 ~aGECvvL~G~SG~GKStllr~LYaNY 61 (235)
T COG4778 35 NAGECVVLHGPSGSGKSTLLRSLYANY 61 (235)
T ss_pred cCccEEEeeCCCCCcHHHHHHHHHhcc
Confidence 456689999999999999999987654
No 151
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.64 E-value=0.032 Score=59.70 Aligned_cols=29 Identities=24% Similarity=0.574 Sum_probs=24.2
Q ss_pred HhhccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 599 TMLTRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 599 ~l~~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.+..+++|+|+||+|||||++++.....+
T Consensus 29 l~~~~~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 29 LLSNGRPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp HHHCTEEEEEESSTTSSHHHHHHHHHHCS
T ss_pred HHHcCCcEEEECCCCCchhHHHHhhhccC
Confidence 34679999999999999999998865543
No 152
>KOG0741|consensus
Probab=94.64 E-value=0.044 Score=62.45 Aligned_cols=32 Identities=25% Similarity=0.525 Sum_probs=25.7
Q ss_pred HHhhccc--eEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 598 ETMLTRH--STMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 598 e~l~~r~--gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
+.+...| |++|+||||+|||.+.+-+.+.++.
T Consensus 249 e~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNA 282 (744)
T KOG0741|consen 249 EQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNA 282 (744)
T ss_pred HHcCccceeeEEEECCCCCChhHHHHHHHHHhcC
Confidence 3344444 9999999999999999998888764
No 153
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.62 E-value=0.024 Score=54.20 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=20.2
Q ss_pred EEEEecCCCChhHHHHHHHHHh
Q psy17620 606 TMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~ 627 (741)
++|+|||||||||+.+.|++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 6899999999999999999875
No 154
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.60 E-value=0.039 Score=58.24 Aligned_cols=52 Identities=29% Similarity=0.417 Sum_probs=36.9
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc-ccccccccc
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA-VSVIELYGV 652 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka-~t~~eLyG~ 652 (741)
..-+.|-+.||||+||||++..|...+..-|.++-+..++|.+ .|-.-|.|.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGD 79 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGD 79 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccccc
Confidence 3456788999999999999999999998888899999999986 555677775
No 155
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.57 E-value=0.045 Score=55.21 Aligned_cols=28 Identities=32% Similarity=0.574 Sum_probs=25.1
Q ss_pred EEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVLGYP 633 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~ 633 (741)
|.|.|||||||||+.+.|+..++..+.+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 6799999999999999999999876654
No 156
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.56 E-value=0.032 Score=61.73 Aligned_cols=74 Identities=19% Similarity=0.197 Sum_probs=45.9
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCC
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGS 680 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~ 680 (741)
..-.++.|.||||||||.+.+.+++.++. ++-.++..+|++.+=-++ .-.+-.+++.+..... .+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~----------~~i~vsa~eL~sk~vGEs----Ek~IR~~F~~A~~~a~-~~ 210 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI----------EPIVMSAGELESENAGEP----GKLIRQRYREAADIIK-KK 210 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC----------CeEEEEHHHhhcCcCCcH----HHHHHHHHHHHHHHhh-cc
Confidence 45568999999999999999999998742 233445566665552111 1234445554432110 12
Q ss_pred CCCeEEEEc
Q psy17620 681 KERKYILFD 689 (741)
Q Consensus 681 ~~~~WIVfD 689 (741)
..+.-|++|
T Consensus 211 ~aPcVLFID 219 (413)
T PLN00020 211 GKMSCLFIN 219 (413)
T ss_pred CCCeEEEEe
Confidence 356888888
No 157
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.55 E-value=0.04 Score=54.74 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=29.1
Q ss_pred EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 643 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka 643 (741)
|.+.|+.||||||+.+.|++.+...|..+ ...-.|..
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v-~~~~~~~~ 39 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEV-VLTREPGG 39 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeE-EEEeCCCC
Confidence 78999999999999999999997666554 33344554
No 158
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.52 E-value=0.058 Score=57.84 Aligned_cols=60 Identities=23% Similarity=0.314 Sum_probs=49.9
Q ss_pred HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc-ccccccccc
Q psy17620 593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA-VSVIELYGV 652 (741)
Q Consensus 593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka-~t~~eLyG~ 652 (741)
+..+|.....-|-|-+.|+||+||||++..|..-+..-|..|-+..|+|.+ .|-.-+.|.
T Consensus 41 l~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 41 LRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 344555556677899999999999999999999998889899999999988 455777775
No 159
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.52 E-value=0.018 Score=58.91 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.1
Q ss_pred hccceEEEEecCCCChhHHHHHHHHH
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.....++|+|||||||||+++.|.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34567889999999999999999764
No 160
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.028 Score=61.42 Aligned_cols=124 Identities=15% Similarity=0.265 Sum_probs=67.4
Q ss_pred HHHHHhhcc--ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHh
Q psy17620 595 QMYETMLTR--HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAV 672 (741)
Q Consensus 595 qL~e~l~~r--~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~ 672 (741)
.||+.+... .||+|+||||+|||.+.|+.|...+. ..+.++- +||--.|= -+| ++++|++
T Consensus 175 ElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A----tFIrvvg------SElVqKYi------GEG--aRlVRel 236 (406)
T COG1222 175 ELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA----TFIRVVG------SELVQKYI------GEG--ARLVREL 236 (406)
T ss_pred HHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc----eEEEecc------HHHHHHHh------ccc--hHHHHHH
Confidence 467776664 59999999999999999998876432 2222221 22221221 133 6777776
Q ss_pred cCCCCCCCCCCeEEEEcCCCChhhhhhccccccCC----cee--eccCCCeeecCCCceEEEEeCCCCCCCCC
Q psy17620 673 NKPLDPGSKERKYILFDGDVDALWIENMNSVMDDN----KIL--TLANGERIRLLAHCQLLFEIHPIQSDSHP 739 (741)
Q Consensus 673 ~~~~~~~~~~~~WIVfDG~vd~~wiE~LNsvLDdn----k~L--~L~nGeri~l~~~~rliFE~~~L~~aSPA 739 (741)
..-.. .+.+..|.+| .+|+.=.-..++--... ++| -|+.-+=+.-..++++|+-|.-..-.=||
T Consensus 237 F~lAr--ekaPsIIFiD-EIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPA 306 (406)
T COG1222 237 FELAR--EKAPSIIFID-EIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPA 306 (406)
T ss_pred HHHHh--hcCCeEEEEe-chhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChh
Confidence 43221 2456788888 44443222221110000 010 01112223446788899888877766666
No 161
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.49 E-value=0.061 Score=51.78 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=28.0
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCeE-EEEeCC
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPAR-TYTLNP 641 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~-~~~inp 641 (741)
.|+++|+++|||||+++.|.+.+...|..+- +....|
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 4789999999999999999999887776554 444444
No 162
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=94.49 E-value=0.052 Score=60.86 Aligned_cols=123 Identities=17% Similarity=0.179 Sum_probs=83.2
Q ss_pred HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCC---CCCcccChH
Q psy17620 593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPE---TRDWYDGLL 665 (741)
Q Consensus 593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~---t~eW~DGvl 665 (741)
+.|+-..-.....|++.|+||+||+.+-+.+...-.+.. ..-...+|..+++. .+|||+---+ ..+=+-|+|
T Consensus 91 ~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~-~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glf 169 (403)
T COG1221 91 REQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRA-EAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLF 169 (403)
T ss_pred HHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhccc-CCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchh
Confidence 334444445677999999999999999999985544421 12233444444443 4589863110 112234444
Q ss_pred HHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620 666 SNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH 731 (741)
Q Consensus 666 s~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~ 731 (741)
. ..+..-+.+| |++.++--|.|=++||++-.-.+.+ .=+.+.++|+++-|+
T Consensus 170 e-------------~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~--~~~~~~dVRli~AT~ 222 (403)
T COG1221 170 E-------------QANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGG--SQPRPVDVRLICATT 222 (403)
T ss_pred e-------------ecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCC--CCCcCCCceeeeccc
Confidence 2 2355789999 8899999999999999987666744 667889999999876
No 163
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.48 E-value=0.23 Score=55.54 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=23.1
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.+-.++++|||||||||+++.|...+.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445678999999999999999988774
No 164
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.47 E-value=0.023 Score=57.41 Aligned_cols=28 Identities=29% Similarity=0.545 Sum_probs=23.8
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....-+.|+|||||||||+.+.|++.+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3456789999999999999999998753
No 165
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.47 E-value=0.034 Score=54.66 Aligned_cols=28 Identities=21% Similarity=0.493 Sum_probs=19.5
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
..+.++|+|++|+|||++++.+...+..
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3567999999999999999988877654
No 166
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.44 E-value=0.09 Score=61.93 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=25.9
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
...|..+++||+|+|||++.+.+++++..
T Consensus 36 ~~~hayLf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 36 KISHAYLFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45788999999999999999999999864
No 167
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.42 E-value=0.024 Score=60.58 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=25.8
Q ss_pred EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS 645 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t 645 (741)
|+|+|-|||||||..+.|++.+...+. .+++++-.++.
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~--~v~~i~~~~~~ 41 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGK--EVVIISDDSLG 41 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT----EEEE-THHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCC--EEEEEcccccc
Confidence 789999999999999999999887443 44555544433
No 168
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.42 E-value=0.092 Score=62.65 Aligned_cols=28 Identities=25% Similarity=0.479 Sum_probs=25.3
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
..|+++++||+|+|||++.+.|++++..
T Consensus 37 l~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 37 LHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 3589999999999999999999999764
No 169
>PRK14531 adenylate kinase; Provisional
Probab=94.41 E-value=0.033 Score=55.66 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-|+++|||||||||+.+.|++.++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999864
No 170
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.39 E-value=0.048 Score=61.33 Aligned_cols=26 Identities=23% Similarity=0.592 Sum_probs=23.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..||+|+||||||||++.+.++..++
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~ 190 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETN 190 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhC
Confidence 56899999999999999999998764
No 171
>PRK13949 shikimate kinase; Provisional
Probab=94.39 E-value=0.032 Score=55.27 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=22.3
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.|+|+|++||||||+-+.|++.++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999874
No 172
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=94.37 E-value=0.029 Score=58.14 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=19.5
Q ss_pred ccceEEEEecCCCChhHHHHHHH
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALV 624 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~ 624 (741)
..+-++++|+||+||||+.+.|+
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcC
Confidence 34669999999999999988774
No 173
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.37 E-value=0.027 Score=54.40 Aligned_cols=22 Identities=36% Similarity=0.729 Sum_probs=19.9
Q ss_pred eEEEEecCCCChhHHHHHHHHH
Q psy17620 605 STMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a 626 (741)
-|||+||+||||||+.+.|.+.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999998764
No 174
>PRK14532 adenylate kinase; Provisional
Probab=94.34 E-value=0.031 Score=55.88 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.7
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.|+++|||||||||+-+.|++.++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998763
No 175
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.33 E-value=0.038 Score=60.86 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=28.0
Q ss_pred HHHHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 596 MYETMLTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 596 L~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
|..++..+..++++|+|||||||+++.|...+.
T Consensus 153 L~~~v~~~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 153 LEHAVISKKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 334566788999999999999999999988764
No 176
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.32 E-value=0.19 Score=60.68 Aligned_cols=120 Identities=18% Similarity=0.265 Sum_probs=75.7
Q ss_pred HHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc----cccccccccCC-CCCc--ccChHHH
Q psy17620 595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGVLNPE-TRDW--YDGLLSN 667 (741)
Q Consensus 595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t----~~eLyG~~d~~-t~eW--~DGvls~ 667 (741)
|+-.......+|+|.|++|||||.+.+.+......-+. ....+|..+++ ..++||..... ++.. .-|.+
T Consensus 391 ~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~--~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l-- 466 (686)
T PRK15429 391 QVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNR--RMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRF-- 466 (686)
T ss_pred HHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCC--CeEEEecccCChhHhhhhhcCcccccccccccchhhHH--
Confidence 44445567789999999999999999998876543333 34445555544 35688864321 1111 11222
Q ss_pred HHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620 668 IFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH 731 (741)
Q Consensus 668 i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~ 731 (741)
.. ..+--+++| +.+++..-+.|-.+|++...-.+.+.. ..+.++|+|+-++
T Consensus 467 --e~---------a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~--~~~~~~RiI~~t~ 519 (686)
T PRK15429 467 --EL---------ADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNK--IIQTDVRLIAATN 519 (686)
T ss_pred --Hh---------cCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCC--cccceEEEEEeCC
Confidence 11 123468888 667888888888888887655554443 4456788888764
No 177
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=94.32 E-value=0.055 Score=60.19 Aligned_cols=26 Identities=23% Similarity=0.592 Sum_probs=23.2
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..|++|+||||||||++.+.+++.+.
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCC
Confidence 46899999999999999999998764
No 178
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=94.32 E-value=0.03 Score=51.08 Aligned_cols=46 Identities=15% Similarity=0.178 Sum_probs=32.1
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIEL 649 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eL 649 (741)
+++++.||||+|||+++-.++..+...+....+.++.|...-..+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~ 46 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQV 46 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHH
Confidence 3689999999999999888887765443334556666666444433
No 179
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.30 E-value=0.046 Score=55.38 Aligned_cols=23 Identities=30% Similarity=0.640 Sum_probs=17.8
Q ss_pred eEEEEecCCCChhHHHHHHHHHh
Q psy17620 605 STMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
-.+|.||||||||+++..+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 38999999999998777766666
No 180
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.30 E-value=0.034 Score=61.41 Aligned_cols=31 Identities=26% Similarity=0.575 Sum_probs=26.6
Q ss_pred HHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 598 ETMLTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 598 e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.+...+..++++||+||||||+.+.|...+.
T Consensus 157 ~~v~~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred HHHHcCCeEEEECCCCccHHHHHHHHHcccC
Confidence 4456688899999999999999999988764
No 181
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.28 E-value=0.034 Score=50.85 Aligned_cols=80 Identities=18% Similarity=0.248 Sum_probs=45.5
Q ss_pred EEEEecCCCChhHHHHHHHHHhc-cCC------CCe--EEEEeCCCccccccccccccCCC-CCcccChHHHHHHHhcCC
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST-VLG------YPA--RTYTLNPKAVSVIELYGVLNPET-RDWYDGLLSNIFRAVNKP 675 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~-~~~------~~~--~~~~inpka~t~~eLyG~~d~~t-~eW~DGvls~i~R~~~~~ 675 (741)
|+|+|+||+||||+++.|.+.-. ..+ ... ..+.++...+..-+.-|..++.. ..|.. .+..+++.. ..
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~-~~~~~~~~~-~~ 79 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGK-EIRKFLEQI-SK 79 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHH-HHHHHHHHH-CT
T ss_pred EEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHH-HHHHHHHHH-HH
Confidence 78999999999999999996311 111 111 12234555555555556544321 11221 445566666 22
Q ss_pred CCCCCCCCeEEEEcCCC
Q psy17620 676 LDPGSKERKYILFDGDV 692 (741)
Q Consensus 676 ~~~~~~~~~WIVfDG~v 692 (741)
.+--++|+|+.-
T Consensus 80 -----~d~ii~vv~~~~ 91 (116)
T PF01926_consen 80 -----SDLIIYVVDASN 91 (116)
T ss_dssp -----ESEEEEEEETTS
T ss_pred -----CCEEEEEEECCC
Confidence 245888899544
No 182
>PRK07667 uridine kinase; Provisional
Probab=94.26 E-value=0.068 Score=54.04 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=30.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN 640 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~in 640 (741)
+--|.|.|++||||||+.+.|++.++..|.++.....+
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~D 54 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHID 54 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 44678999999999999999999998777666555444
No 183
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.25 E-value=0.042 Score=54.36 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=25.3
Q ss_pred hhccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 600 MLTRHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
++...-|+++|++||||||+.+.|++.+..
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 344557899999999999999999998864
No 184
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.25 E-value=0.024 Score=62.62 Aligned_cols=23 Identities=22% Similarity=0.575 Sum_probs=20.5
Q ss_pred EEEEecCCCChhHHHHHHHHHhc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+-|.|||||||||+++++|.--.
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 66999999999999999998643
No 185
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.22 E-value=0.034 Score=53.27 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEecCCCChhHHHHHHHHHhc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
++++|+|||||||+.+.|++.++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcC
Confidence 68999999999999999998853
No 186
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.22 E-value=0.22 Score=49.75 Aligned_cols=28 Identities=32% Similarity=0.466 Sum_probs=24.8
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...|..++.||+|+|||++.+.+++.+.
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 3457899999999999999999999874
No 187
>KOG0743|consensus
Probab=94.22 E-value=0.036 Score=62.31 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=29.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 643 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka 643 (741)
++|=+|+||||+|||+++-++|+-+ ...++.++-.+
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L-----~ydIydLeLt~ 270 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL-----NYDIYDLELTE 270 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc-----CCceEEeeecc
Confidence 6799999999999999999999987 35666665433
No 188
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.21 E-value=0.029 Score=55.41 Aligned_cols=24 Identities=38% Similarity=0.646 Sum_probs=21.2
Q ss_pred ceEEEEecCCCChhHHHHHHHHHh
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.-++|+||+||||||+.+.|++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 357899999999999999999864
No 189
>PRK13768 GTPase; Provisional
Probab=94.21 E-value=0.058 Score=57.04 Aligned_cols=40 Identities=25% Similarity=0.420 Sum_probs=35.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 643 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka 643 (741)
..+++.||+|+||||+...++.++...|.++.+..++|.+
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~ 42 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAV 42 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCcc
Confidence 3688999999999999999999998888888888888865
No 190
>PRK06893 DNA replication initiation factor; Validated
Probab=94.20 E-value=0.047 Score=56.73 Aligned_cols=34 Identities=21% Similarity=0.126 Sum_probs=26.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPART 636 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~ 636 (741)
+..++|+||||+|||.+.+.++..+...+.++.+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y 72 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIY 72 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEE
Confidence 4467999999999999999999886544444433
No 191
>PF13479 AAA_24: AAA domain
Probab=94.19 E-value=0.094 Score=53.90 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=18.3
Q ss_pred cceEEEEecCCCChhHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINAL 623 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L 623 (741)
..-++|+|+||+|||++...+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 457899999999999987776
No 192
>PRK02496 adk adenylate kinase; Provisional
Probab=94.17 E-value=0.037 Score=55.13 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=21.2
Q ss_pred EEEEecCCCChhHHHHHHHHHhc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
++++|||||||||+.+.|++.++
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998864
No 193
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.16 E-value=0.057 Score=51.62 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=29.3
Q ss_pred HHHHHhhccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
+|-+.+.....+.|.|+.|+||||+.+.+++++..
T Consensus 14 ~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 14 AFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 45555666778999999999999999999999753
No 194
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.15 E-value=0.036 Score=55.26 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=21.1
Q ss_pred EEEEecCCCChhHHHHHHHHHhc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
|+|.|||||||||+.+.|++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999863
No 195
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=94.14 E-value=0.71 Score=56.61 Aligned_cols=90 Identities=19% Similarity=0.220 Sum_probs=51.0
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc-cccccccccccCCCCCc---ccChHHHHHHHhcCCCCCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA-VSVIELYGVLNPETRDW---YDGLLSNIFRAVNKPLDPG 679 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka-~t~~eLyG~~d~~t~eW---~DGvls~i~R~~~~~~~~~ 679 (741)
..++++||||+|||++.+.++++++. + ..+++-.. .+..++.|.- +.| ..|-+...++++..
T Consensus 350 ~~i~l~GppG~GKTtl~~~ia~~l~~---~--~~~i~~~~~~d~~~i~g~~----~~~~g~~~G~~~~~l~~~~~----- 415 (784)
T PRK10787 350 PILCLVGPPGVGKTSLGQSIAKATGR---K--YVRMALGGVRDEAEIRGHR----RTYIGSMPGKLIQKMAKVGV----- 415 (784)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC---C--EEEEEcCCCCCHHHhccch----hccCCCCCcHHHHHHHhcCC-----
Confidence 36899999999999999999998742 2 33333222 2234454442 122 34555555554321
Q ss_pred CCCCeEEEEcCC--CChh----hhhhccccccCCce
Q psy17620 680 SKERKYILFDGD--VDAL----WIENMNSVMDDNKI 709 (741)
Q Consensus 680 ~~~~~WIVfDG~--vd~~----wiE~LNsvLDdnk~ 709 (741)
.+.-|++|-- +.+. -...|-.+||++.-
T Consensus 416 --~~~villDEidk~~~~~~g~~~~aLlevld~~~~ 449 (784)
T PRK10787 416 --KNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQN 449 (784)
T ss_pred --CCCEEEEEChhhcccccCCCHHHHHHHHhccccE
Confidence 2346888821 1111 14566677776433
No 196
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=94.13 E-value=0.082 Score=60.79 Aligned_cols=121 Identities=17% Similarity=0.271 Sum_probs=86.4
Q ss_pred HHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCCCCCcccChHHHHHHHhc
Q psy17620 598 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPETRDWYDGLLSNIFRAVN 673 (741)
Q Consensus 598 e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~t~eW~DGvls~i~R~~~ 673 (741)
..-.+...|+|+|+||+||....+...++..+-+.| ...||..|++. +||||+- .|.||=+-+...
T Consensus 263 r~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~P--FIaiNCaAiPe~LlESELFGye--------~GAFTGA~~~GK 332 (560)
T COG3829 263 RIAKTDSTVLILGESGTGKELFARAIHNLSPRANGP--FIAINCAAIPETLLESELFGYE--------KGAFTGASKGGK 332 (560)
T ss_pred hhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCC--eEEEecccCCHHHHHHHHhCcC--------CccccccccCCC
Confidence 344567799999999999999999988876554333 56788888775 8999985 455555544211
Q ss_pred CCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620 674 KPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH 731 (741)
Q Consensus 674 ~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~ 731 (741)
.-. -+-.++--|.+| |+++...=--|-.||.+.....+.+-+.++. .+|+|--|.
T Consensus 333 ~Gl-fE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~v--DVRIIAATN 389 (560)
T COG3829 333 PGL-FELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPV--DVRIIAATN 389 (560)
T ss_pred Ccc-eeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceee--EEEEEeccC
Confidence 000 012244579999 9998877777888999999999987775554 688887664
No 197
>PRK09183 transposase/IS protein; Provisional
Probab=94.11 E-value=0.3 Score=51.92 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=28.1
Q ss_pred hhccceEEEEecCCCChhHHHHHHHHHhccCCCCeE
Q psy17620 600 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPAR 635 (741)
Q Consensus 600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~ 635 (741)
+.....++|+||||+|||++...++......|..+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~ 134 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVR 134 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 455678999999999999999999876544454443
No 198
>PRK06851 hypothetical protein; Provisional
Probab=94.09 E-value=0.56 Score=52.32 Aligned_cols=46 Identities=20% Similarity=0.432 Sum_probs=35.3
Q ss_pred HHHHHHHh--hccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEE
Q psy17620 593 VVQMYETM--LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT 638 (741)
Q Consensus 593 v~qL~e~l--~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~ 638 (741)
...+++.+ ..++-++|.|+||+||||+++.++++....|..+.++.
T Consensus 202 ~~s~~~~l~~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~h 249 (367)
T PRK06851 202 AVDFVPSLTEGVKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYH 249 (367)
T ss_pred HHhhHHhHhcccceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 44455444 34678999999999999999999998877777666554
No 199
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.07 E-value=0.098 Score=61.26 Aligned_cols=120 Identities=16% Similarity=0.230 Sum_probs=73.7
Q ss_pred HHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCCC-C--CcccChHHH
Q psy17620 595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPET-R--DWYDGLLSN 667 (741)
Q Consensus 595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~t-~--eW~DGvls~ 667 (741)
++........+|+|.|++||||+++.+.+......-+. ....+|..+++. .+|||+....- + ..+-|.+.
T Consensus 211 ~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~--pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~- 287 (534)
T TIGR01817 211 QARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKR--PFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFE- 287 (534)
T ss_pred HHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCC--CeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCccc-
Confidence 34444467889999999999999999999987543332 355566655543 57788652110 0 01122211
Q ss_pred HHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620 668 IFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH 731 (741)
Q Consensus 668 i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~ 731 (741)
...+--++|| +.+++.--..|-.+|++...-.+.+.. ..+.++|+|+-++
T Consensus 288 ------------~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~--~~~~~~riI~~s~ 339 (534)
T TIGR01817 288 ------------LADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNR--TLKVDVRLVAATN 339 (534)
T ss_pred ------------ccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCc--eEeecEEEEEeCC
Confidence 1233468888 456777677777788776554443333 4455788888653
No 200
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.07 E-value=0.04 Score=55.29 Aligned_cols=94 Identities=18% Similarity=0.264 Sum_probs=49.9
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCe-EEEEeCCCccccccccc-----cccCCCCCc-ccChHHHHHHHhcCCCC
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPA-RTYTLNPKAVSVIELYG-----VLNPETRDW-YDGLLSNIFRAVNKPLD 677 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~-~~~~inpka~t~~eLyG-----~~d~~t~eW-~DGvls~i~R~~~~~~~ 677 (741)
-|+|+|||||||||..+.|++.+. .++ ..-.+...++....=.| ++|. ++| -|++...++++.-...+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~---i~hlstgd~~r~~~~~~t~lg~~~k~~i~~--g~lv~d~i~~~~v~~rl~~~d 76 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG---LPHLDTGDILRAAIAERTELGEEIKKYIDK--GELVPDEIVNGLVKERLDEAD 76 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CcEEcHhHHhHhhhccCChHHHHHHHHHHc--CCccchHHHHHHHHHHHHhhc
Confidence 479999999999999999999853 221 11222222222222222 1332 344 44455566665433211
Q ss_pred CCCCCCeEEEEcCCCChhhhhhccccccC
Q psy17620 678 PGSKERKYILFDGDVDALWIENMNSVMDD 706 (741)
Q Consensus 678 ~~~~~~~WIVfDG~vd~~wiE~LNsvLDd 706 (741)
....+|.++=|-...-.+.+...|.+
T Consensus 77 ---~~~~~I~dg~PR~~~qa~~l~r~l~~ 102 (178)
T COG0563 77 ---CKAGFILDGFPRTLCQARALKRLLKE 102 (178)
T ss_pred ---ccCeEEEeCCCCcHHHHHHHHHHHHH
Confidence 11235544445555666666666544
No 201
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.06 E-value=0.04 Score=54.60 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.3
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-++|.|+|||||||+.+.|++.+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4689999999999999999998864
No 202
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.06 E-value=0.064 Score=58.13 Aligned_cols=42 Identities=26% Similarity=0.405 Sum_probs=35.5
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 643 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka 643 (741)
..+.|.++||+||||||++..|...+...|.++.+..++|.+
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 466888999999999999999999987777777777777665
No 203
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=94.05 E-value=0.17 Score=53.73 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=26.6
Q ss_pred HHHHHHHhhc----cceEEEEecCCCChhHHHHHHHHH
Q psy17620 593 VVQMYETMLT----RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 593 v~qL~e~l~~----r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
+.++.+.+.. .+.|.|+|++|+|||++.+.++..
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccc
Confidence 4455555544 678889999999999999888766
No 204
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.03 E-value=0.076 Score=61.45 Aligned_cols=37 Identities=22% Similarity=0.442 Sum_probs=29.7
Q ss_pred HHHHHHHhhccce-EEEEecCCCChhHHHHHHHHHhcc
Q psy17620 593 VVQMYETMLTRHS-TMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 593 v~qL~e~l~~r~g-v~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
+..|.+++..++| |+++||+||||||.+..+...+..
T Consensus 231 ~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l~~ 268 (486)
T TIGR02533 231 LSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLNT 268 (486)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhccCC
Confidence 5567777777887 579999999999999987666643
No 205
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=94.02 E-value=0.055 Score=60.45 Aligned_cols=114 Identities=23% Similarity=0.284 Sum_probs=0.0
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccC----CCCeEEEEeCC------------------------------Ccccccccc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVL----GYPARTYTLNP------------------------------KAVSVIELY 650 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~----~~~~~~~~inp------------------------------ka~t~~eLy 650 (741)
|++|-|+.|+||||+.+.|+..|-.. |.+..+..-+| -.-|.+.+.
T Consensus 40 gvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvv 119 (423)
T COG1239 40 GALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLV 119 (423)
T ss_pred eeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhhc
Q ss_pred ccccCCC------CCcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCC
Q psy17620 651 GVLNPET------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLA 722 (741)
Q Consensus 651 G~~d~~t------~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~ 722 (741)
|++|+.. ..++.|+|.++=| -.+-+| +.+|......|-.++-...--.=..|-.|..|-
T Consensus 120 GslDi~ka~~~g~~af~PGlLa~AnR-------------GIlYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa 186 (423)
T COG1239 120 GSLDIEKALEEGPKAFQPGLLARANR-------------GILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPA 186 (423)
T ss_pred cccCHHHHHhcCccccCCcchhhccC-------------CEEEEeccccccHHHHHHHHHHHHhCCceeeeCceeeccCc
Q ss_pred CceEEEEeC
Q psy17620 723 HCQLLFEIH 731 (741)
Q Consensus 723 ~~rliFE~~ 731 (741)
++=+|.-+.
T Consensus 187 ~fvligTmN 195 (423)
T COG1239 187 RFLLIGTMN 195 (423)
T ss_pred cEEEEeecC
No 206
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.02 E-value=0.052 Score=63.20 Aligned_cols=35 Identities=26% Similarity=0.531 Sum_probs=26.4
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 643 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka 643 (741)
-.+|.|||||||||++++|++.++ ..+. ...||-.
T Consensus 47 iLlLtGP~G~GKtttv~~La~elg---~~v~-Ew~np~~ 81 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKELG---FEVQ-EWINPVS 81 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CeeE-EecCCCC
Confidence 578899999999999999999874 3332 2356654
No 207
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.02 E-value=0.043 Score=51.89 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=21.0
Q ss_pred EEEEecCCCChhHHHHHHHHHhc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
|.|+|+|||||||+.+.|++.++
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998863
No 208
>KOG0745|consensus
Probab=94.01 E-value=0.059 Score=60.20 Aligned_cols=87 Identities=14% Similarity=0.356 Sum_probs=59.4
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK 681 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~ 681 (741)
....|+|+||+|||||-+.++||+.++ |-+.+.+.-.+|-.-+-|. =.+-++.+++..+.-+.+ +.
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~ld-----VPfaIcDcTtLTQAGYVGe-------DVEsvi~KLl~~A~~nVe--kA 290 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVLD-----VPFAICDCTTLTQAGYVGE-------DVESVIQKLLQEAEYNVE--KA 290 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHhC-----CCeEEecccchhhcccccc-------cHHHHHHHHHHHccCCHH--HH
Confidence 356899999999999999999999974 4455556566665544443 356788888887754432 33
Q ss_pred CCeEEEEcCCCChhh--hhhcccc
Q psy17620 682 ERKYILFDGDVDALW--IENMNSV 703 (741)
Q Consensus 682 ~~~WIVfDG~vd~~w--iE~LNsv 703 (741)
.+-.+++| .+|-.- .|.+|+.
T Consensus 291 QqGIVflD-EvDKi~~~~~~i~~~ 313 (564)
T KOG0745|consen 291 QQGIVFLD-EVDKITKKAESIHTS 313 (564)
T ss_pred hcCeEEEe-hhhhhcccCcccccc
Confidence 44567777 566543 5667665
No 209
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.00 E-value=0.034 Score=56.24 Aligned_cols=28 Identities=25% Similarity=0.525 Sum_probs=24.2
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.....|+++|||||||||+++.++.-+.
T Consensus 29 a~ge~vv~lGpSGcGKTTLLnl~AGf~~ 56 (259)
T COG4525 29 ASGELVVVLGPSGCGKTTLLNLIAGFVT 56 (259)
T ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCcC
Confidence 3566899999999999999999998764
No 210
>PRK13947 shikimate kinase; Provisional
Probab=94.00 E-value=0.042 Score=53.80 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=22.1
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.|+|+|+|||||||+-+.|++.++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999874
No 211
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.97 E-value=0.063 Score=58.78 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=31.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP 641 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp 641 (741)
.+.++++||+|+||||++..|+..+...|.++.+...++
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 457889999999999999999999876666666655555
No 212
>KOG0744|consensus
Probab=93.97 E-value=0.041 Score=59.42 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=25.2
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..++-++|.||||+|||++.|.|++-++
T Consensus 175 t~NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeeeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 4578899999999999999999999875
No 213
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.96 E-value=0.098 Score=45.06 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=25.7
Q ss_pred EEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVLGYPART 636 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~ 636 (741)
+.+.|.+|+|||++...|+..+.+.|.++-.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~ 32 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLL 32 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 5788999999999999999999876655433
No 214
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.95 E-value=0.042 Score=55.39 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEEecCCCChhHHHHHHHHHh
Q psy17620 606 TMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~ 627 (741)
|.|.||+||||||+.+.|+..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 215
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.93 E-value=0.089 Score=54.02 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=19.6
Q ss_pred EEEEecCCCChhHHHHHHHHHh
Q psy17620 606 TMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~ 627 (741)
+++.|+||||||+.++.+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999998873
No 216
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.92 E-value=0.046 Score=54.59 Aligned_cols=26 Identities=35% Similarity=0.700 Sum_probs=23.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
++.++|+||+|||||++.+.|.+...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 56899999999999999999998764
No 217
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.92 E-value=0.046 Score=58.81 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=26.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGY 632 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~ 632 (741)
.+++++.||||||||++.+.+++.+..+|.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 458999999999999999999998876653
No 218
>KOG0733|consensus
Probab=93.91 E-value=0.039 Score=63.84 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=23.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-.||+|.||||||||.+.++++.-+.
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel~ 248 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGELG 248 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhcC
Confidence 34999999999999999999998763
No 219
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.059 Score=58.12 Aligned_cols=59 Identities=19% Similarity=0.385 Sum_probs=39.2
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHh
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAV 672 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~ 672 (741)
....|+|+||||||||-+.++|++.++ |....-+.-++|-.-+-|. =.+-++.+++..+
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~Ln-----VPFaiADATtLTEAGYVGE-------DVENillkLlqaa 154 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKILN-----VPFAIADATTLTEAGYVGE-------DVENILLKLLQAA 154 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHhC-----CCeeeccccchhhccccch-------hHHHHHHHHHHHc
Confidence 456799999999999999999999984 3344445455554444443 2344555555544
No 220
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.91 E-value=0.054 Score=66.29 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=26.2
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
...|..++.||+|+||||+.+.|++.+..
T Consensus 35 ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 35 RINHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 45789999999999999999999999864
No 221
>PRK06696 uridine kinase; Validated
Probab=93.89 E-value=0.059 Score=55.66 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=26.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPA 634 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~ 634 (741)
..-|.|.|+|||||||+.+.|++.+...|.++
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v 53 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPV 53 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 34678999999999999999999997655443
No 222
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.88 E-value=0.069 Score=51.73 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.7
Q ss_pred EEEEecCCCChhHHHHHHHHHhccCC
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVLG 631 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~~ 631 (741)
|+++|+|||||||+.+.|++.+...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g 27 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRG 27 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 78999999999999999999885433
No 223
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.84 E-value=0.32 Score=55.32 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=30.8
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP 641 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp 641 (741)
..|+++|++|+||||...-|+..+...|.++-+...+|
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 46899999999999999999998876676665555554
No 224
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.83 E-value=0.034 Score=52.21 Aligned_cols=26 Identities=38% Similarity=0.584 Sum_probs=22.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++|+....
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 45688999999999999999987754
No 225
>KOG0738|consensus
Probab=93.83 E-value=0.066 Score=59.13 Aligned_cols=24 Identities=29% Similarity=0.655 Sum_probs=21.1
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
-.||+++||||+|||.+.|+++.-
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATE 268 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATE 268 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHh
Confidence 459999999999999999888754
No 226
>KOG0727|consensus
Probab=93.83 E-value=0.051 Score=56.74 Aligned_cols=33 Identities=21% Similarity=0.562 Sum_probs=27.5
Q ss_pred HHHHHhhc--cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 595 QMYETMLT--RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 595 qL~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
+||+.+.. -+||+++||||||||.+.|..+...
T Consensus 179 ~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 179 DLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred HHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 57777655 5699999999999999999988653
No 227
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.81 E-value=0.051 Score=57.65 Aligned_cols=34 Identities=32% Similarity=0.521 Sum_probs=27.5
Q ss_pred HHHhhccceEEEEecCCCChhHHHHHHHHHhccC
Q psy17620 597 YETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL 630 (741)
Q Consensus 597 ~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~ 630 (741)
...+..+..|++.||+||||||+++.|...+...
T Consensus 121 ~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 121 RSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp HHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred hhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 3344567889999999999999999999876543
No 228
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.81 E-value=0.045 Score=49.93 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.9
Q ss_pred EEEEecCCCChhHHHHHHHHHhc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
|.|.||||+|||++.+.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998865
No 229
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.81 E-value=0.064 Score=54.11 Aligned_cols=26 Identities=23% Similarity=0.520 Sum_probs=22.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..-++|+||||+||||++|.+.....
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhc
Confidence 44688999999999999999998754
No 230
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.81 E-value=0.046 Score=54.28 Aligned_cols=26 Identities=31% Similarity=0.600 Sum_probs=23.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...|+|+|++||||||+.+.|++.++
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 45699999999999999999998763
No 231
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.80 E-value=0.041 Score=56.04 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
..-|.|+|+|||||||+.+.|++.+
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4467899999999999999999987
No 232
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.78 E-value=0.15 Score=56.75 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=24.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
.|+++++||+|+|||++.+.+++.+..
T Consensus 39 ~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 39 AQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 468999999999999999999888754
No 233
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.77 E-value=0.074 Score=55.10 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=21.7
Q ss_pred EEEEecCCCChhHHHHHHHHHhcc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
|.|.||+||||||+.+.|+..+..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999999864
No 234
>PRK00698 tmk thymidylate kinase; Validated
Probab=93.76 E-value=0.071 Score=53.64 Aligned_cols=30 Identities=30% Similarity=0.258 Sum_probs=25.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYP 633 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~ 633 (741)
.-|.+.|+.||||||+.+.|++.+...|..
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~ 33 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQQGRD 33 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCc
Confidence 468899999999999999999998765533
No 235
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.73 E-value=0.11 Score=51.28 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=27.8
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEE
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYT 638 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~ 638 (741)
.+.++|++||||||+++.|...+...|.++-+..
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK 36 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIK 36 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 5789999999999999999999877665554333
No 236
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=93.71 E-value=0.088 Score=51.09 Aligned_cols=38 Identities=29% Similarity=0.485 Sum_probs=31.8
Q ss_pred EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 643 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka 643 (741)
+.++|++||||||+.+.++..+...|.++.+...+|..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~ 39 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSS 39 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC
Confidence 67899999999999999999988777777776667643
No 237
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.70 E-value=0.036 Score=58.66 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=23.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
..-+-|+||.||||||++|++++.+..
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p 54 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKP 54 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 456789999999999999999998763
No 238
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=93.67 E-value=0.053 Score=54.55 Aligned_cols=115 Identities=18% Similarity=0.343 Sum_probs=57.4
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc-----cCCCCeEEEEe---CCCccccccccccccCCCCCcccChHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST-----VLGYPARTYTL---NPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVN 673 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~-----~~~~~~~~~~i---npka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~ 673 (741)
.+..|+|+||+|||||+++..|..-.. .+ .+...+.+ ..+.+..-++-|+-- -+..++..+.. ..
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~~~~~~~~~~~~lvD~PGH~r-----lr~~~~~~~~~-~~ 74 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIAYNVNNSKGKKLRLVDIPGHPR-----LRSKLLDELKY-LS 74 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEECCGSSTCGTCECEEEETT-HC-----CCHHHHHHHHH-HG
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCceEEeecCCCCEEEEEECCCcHH-----HHHHHHHhhhc-hh
Confidence 367899999999999999999987521 11 11122222 233444455555532 22233333211 11
Q ss_pred CCCCCCCCCCeEEEEcCCCCh----hhhhhccccccCCceeeccCCCeeecCCCceEE--EEeCCCCCCCCC
Q psy17620 674 KPLDPGSKERKYILFDGDVDA----LWIENMNSVMDDNKILTLANGERIRLLAHCQLL--FEIHPIQSDSHP 739 (741)
Q Consensus 674 ~~~~~~~~~~~WIVfDG~vd~----~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rli--FE~~~L~~aSPA 739 (741)
....-..|.|+-.++ .-+|.|..||-+.... +..+.++ +-=+|+..|-|+
T Consensus 75 ------~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~----------~~~~piLIacNK~Dl~~A~~~ 130 (181)
T PF09439_consen 75 ------NAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQ----------KNKPPILIACNKQDLFTAKPP 130 (181)
T ss_dssp ------GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCC----------TT--EEEEEEE-TTSTT---H
T ss_pred ------hCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhc----------cCCCCEEEEEeCccccccCCH
Confidence 124578889987653 4788888887543211 2233343 334577777664
No 239
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=93.67 E-value=0.1 Score=52.95 Aligned_cols=88 Identities=18% Similarity=0.311 Sum_probs=45.5
Q ss_pred eEEEEecCCCChhHHHHHHHHH--hccCCCCeEEEEeCCCccc-cccccccccCC-CCCcccChHHHHHHHhcCCCCCCC
Q psy17620 605 STMIVGPTGGGKSVVINALVKT--STVLGYPARTYTLNPKAVS-VIELYGVLNPE-TRDWYDGLLSNIFRAVNKPLDPGS 680 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a--~~~~~~~~~~~~inpka~t-~~eLyG~~d~~-t~eW~DGvls~i~R~~~~~~~~~~ 680 (741)
.++|.||.||||||+++++..+ +...|..+.... ...+. .+++|-.++.. +-...-+-|+.-+|+...... ..
T Consensus 30 ~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~--~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g~~~~~~i~~-~~ 106 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE--GSSLPVFENIFADIGDEQSIEQSLSTFSSHMKNIARILQ-HA 106 (200)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc--cccCcCccEEEEecCchhhhhcCcchHHHHHHHHHHHHH-hC
Confidence 5999999999999999998832 223343222110 00111 23444333321 112222345555555422111 12
Q ss_pred CCCeEEEEcCC---CChh
Q psy17620 681 KERKYILFDGD---VDAL 695 (741)
Q Consensus 681 ~~~~WIVfDG~---vd~~ 695 (741)
..++++++|-| .|+.
T Consensus 107 ~~p~llllDEp~~glD~~ 124 (200)
T cd03280 107 DPDSLVLLDELGSGTDPV 124 (200)
T ss_pred CCCcEEEEcCCCCCCCHH
Confidence 36789999966 4554
No 240
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=93.66 E-value=0.17 Score=57.71 Aligned_cols=121 Identities=18% Similarity=0.292 Sum_probs=83.1
Q ss_pred hhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc----cccccccccCCCCCcccChHHHHHHHhcCC
Q psy17620 600 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGVLNPETRDWYDGLLSNIFRAVNKP 675 (741)
Q Consensus 600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t----~~eLyG~~d~~t~eW~DGvls~i~R~~~~~ 675 (741)
..+...|+|.|+||+||..+.+++.....+-..| ...+|..|++ -+||||+. -|.||-++++=.-.
T Consensus 243 A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kP--fV~~NCAAlPesLlESELFGHe--------KGAFTGA~~~r~Gr 312 (550)
T COG3604 243 AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKP--FVKLNCAALPESLLESELFGHE--------KGAFTGAINTRRGR 312 (550)
T ss_pred hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCC--ceeeeccccchHHHHHHHhccc--------ccccccchhccCcc
Confidence 3567899999999999999999988876554443 3445655555 48999996 46677666532110
Q ss_pred CCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC-CCC
Q psy17620 676 LDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH-PIQ 734 (741)
Q Consensus 676 ~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~-~L~ 734 (741)
-+-.+.--+.+| |++....=--|-.||-+.-.=.+.+...|+. .+|+|.-|. ||.
T Consensus 313 --FElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikV--DVRiIAATNRDL~ 370 (550)
T COG3604 313 --FELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKV--DVRVIAATNRDLE 370 (550)
T ss_pred --eeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEE--EEEEEeccchhHH
Confidence 012355678899 9998887777777777655555655555554 589998875 543
No 241
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.64 E-value=0.075 Score=61.28 Aligned_cols=27 Identities=33% Similarity=0.602 Sum_probs=24.3
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
.|+++++||||+||||+.+.+++.+..
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 467899999999999999999999754
No 242
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.63 E-value=0.077 Score=56.79 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=32.3
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP 641 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp 641 (741)
.+.++++||+|+||||+...|+..+...|.++-+...++
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 467889999999999999999988877676666666665
No 243
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.61 E-value=0.053 Score=55.29 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.9
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-|.|+||+||||||+.+.|+..+.
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567999999999999999998875
No 244
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.61 E-value=0.1 Score=53.81 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=26.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYP 633 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~ 633 (741)
...+++|+||+|+|||++.+.++......+.+
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~ 72 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRN 72 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCc
Confidence 45689999999999999999999876443433
No 245
>PRK06547 hypothetical protein; Provisional
Probab=93.58 E-value=0.055 Score=53.93 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
..-|+|.|++||||||+.+.|++.+
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456777999999999999999885
No 246
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=93.58 E-value=0.18 Score=52.89 Aligned_cols=78 Identities=19% Similarity=0.377 Sum_probs=48.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE 682 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~ 682 (741)
-+.|+|.|+.|+|||+++|.+...+...| .++.-+....+ +-+..++..+.. .+.
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L------------------~~l~~l~~~l~~-----~~~ 106 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDL------------------GDLPELLDLLRD-----RPY 106 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHh------------------ccHHHHHHHHhc-----CCC
Confidence 45688899999999999999999887655 33333332221 124555555432 234
Q ss_pred CeEEEEc----CCCChhhhhhccccccC
Q psy17620 683 RKYILFD----GDVDALWIENMNSVMDD 706 (741)
Q Consensus 683 ~~WIVfD----G~vd~~wiE~LNsvLDd 706 (741)
+-.|.+| .+-|+.+ -.|-|+||.
T Consensus 107 kFIlf~DDLsFe~~d~~y-k~LKs~LeG 133 (249)
T PF05673_consen 107 KFILFCDDLSFEEGDTEY-KALKSVLEG 133 (249)
T ss_pred CEEEEecCCCCCCCcHHH-HHHHHHhcC
Confidence 4566666 2224444 567788874
No 247
>KOG0733|consensus
Probab=93.57 E-value=0.069 Score=61.87 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=45.2
Q ss_pred HHHHhhc--cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhc
Q psy17620 596 MYETMLT--RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVN 673 (741)
Q Consensus 596 L~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~ 673 (741)
+|+.+.. -.||+|+||||||||-+.|+.|+--. +|--++.-.||+--|-- --.+++|+..
T Consensus 536 ~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag----------~NFisVKGPELlNkYVG--------ESErAVR~vF 597 (802)
T KOG0733|consen 536 LFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAG----------ANFISVKGPELLNKYVG--------ESERAVRQVF 597 (802)
T ss_pred HHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhcc----------CceEeecCHHHHHHHhh--------hHHHHHHHHH
Confidence 5666554 45999999999999999888776532 22234444556544422 1244555543
Q ss_pred CCCCCCCCCCeEEEEc
Q psy17620 674 KPLDPGSKERKYILFD 689 (741)
Q Consensus 674 ~~~~~~~~~~~WIVfD 689 (741)
.... ...+.-|.||
T Consensus 598 qRAR--~saPCVIFFD 611 (802)
T KOG0733|consen 598 QRAR--ASAPCVIFFD 611 (802)
T ss_pred HHhh--cCCCeEEEec
Confidence 2211 2356899999
No 248
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.56 E-value=0.19 Score=58.27 Aligned_cols=106 Identities=21% Similarity=0.246 Sum_probs=59.1
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccC--CCCeEEEEeCCCcccc-ccc--cccccCC--CCCcccChHHHHHHHhcC
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVL--GYPARTYTLNPKAVSV-IEL--YGVLNPE--TRDWYDGLLSNIFRAVNK 674 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~--~~~~~~~~inpka~t~-~eL--yG~~d~~--t~eW~DGvls~i~R~~~~ 674 (741)
....++|+||+|+||||+...|+..+... +.++.+...++.-+.. +++ ||..... .....++-+..++++..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~- 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR- 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc-
Confidence 45678899999999999999998865443 2345555555433321 222 2221110 11133445666666542
Q ss_pred CCCCCCCCCeEEEEcCC----CChhhhhhcc---ccccCCceeeccCC
Q psy17620 675 PLDPGSKERKYILFDGD----VDALWIENMN---SVMDDNKILTLANG 715 (741)
Q Consensus 675 ~~~~~~~~~~WIVfDG~----vd~~wiE~LN---svLDdnk~L~L~nG 715 (741)
...+|++|.+ -|...++.|. ........|.++.+
T Consensus 428 -------~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAt 468 (559)
T PRK12727 428 -------DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPAN 468 (559)
T ss_pred -------cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECC
Confidence 3579999933 4555554442 22344556666543
No 249
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.55 E-value=0.1 Score=52.11 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=24.8
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPA 634 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~ 634 (741)
-+.++|++||||||+++.|...+...|..+
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l~~~g~~v 37 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPALCARGIRP 37 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHHhhcCCeE
Confidence 467999999999999999999887655443
No 250
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.55 E-value=0.053 Score=55.40 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.9
Q ss_pred EEEEecCCCChhHHHHHHHHHhc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
|+|+|||||||||+.+.|++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998764
No 251
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.53 E-value=0.083 Score=54.81 Aligned_cols=32 Identities=31% Similarity=0.323 Sum_probs=26.6
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPA 634 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~ 634 (741)
..-+.|.||+||||||+.+.|+..+...+..+
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 44678999999999999999999987655443
No 252
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.53 E-value=0.064 Score=54.47 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=26.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPART 636 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~ 636 (741)
++.++|.||||||||++++.+.+++...|.++..
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~ 51 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIG 51 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 3467788999999999999999988776544433
No 253
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.49 E-value=0.056 Score=56.38 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.6
Q ss_pred EEEEecCCCChhHHHHHHHHHhc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
|+|+|||||||||+-+.|++.++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999874
No 254
>PRK14527 adenylate kinase; Provisional
Probab=93.47 E-value=0.058 Score=54.24 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=22.1
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-++++|||||||||..+.|++.++
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999998764
No 255
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.46 E-value=0.21 Score=61.53 Aligned_cols=37 Identities=14% Similarity=0.381 Sum_probs=30.7
Q ss_pred HHHHHHHhhc--cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 593 VVQMYETMLT--RHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 593 v~qL~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
+.++.+.+.. ..+++|+||||+|||++++.|+..+..
T Consensus 188 i~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~ 226 (821)
T CHL00095 188 IERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVN 226 (821)
T ss_pred HHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 7777777744 458999999999999999999987643
No 256
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.46 E-value=0.094 Score=53.65 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=24.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
....++|+||+|+|||++.+.++.....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4568999999999999999999887643
No 257
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=93.44 E-value=0.058 Score=52.00 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=19.4
Q ss_pred EEecCCCChhHHHHHHHHHhc
Q psy17620 608 IVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 608 lvGp~gsGKTt~~~~L~~a~~ 628 (741)
|+|||||||||+.+.|++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~ 21 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG 21 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT
T ss_pred CcCCCCCChHHHHHHHHHhcC
Confidence 689999999999999999874
No 258
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.44 E-value=0.23 Score=54.64 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=26.7
Q ss_pred hhccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 600 MLTRHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
-...|+.++.||+|+||+++.+.+++++..
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 456789999999999999999999999853
No 259
>PRK04040 adenylate kinase; Provisional
Probab=93.44 E-value=0.062 Score=54.27 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.8
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-|+|+|+|||||||+.+.|++.+.
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999999873
No 260
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.42 E-value=0.056 Score=54.49 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=21.3
Q ss_pred ceEEEEecCCCChhHHHHHHHHHh
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
..++|+|||||||||+.+.|.+..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 358999999999999999998764
No 261
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.41 E-value=0.052 Score=56.42 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=21.1
Q ss_pred ceEEEEecCCCChhHHHHHHHHHh
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.-|.|+||+|+||||++|+|....
T Consensus 31 E~VaiIG~SGaGKSTLLR~lngl~ 54 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNGLV 54 (258)
T ss_pred cEEEEECCCCCcHHHHHHHHhccc
Confidence 357899999999999999999854
No 262
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.41 E-value=0.086 Score=55.48 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=23.9
Q ss_pred Hhhccc-eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 599 TMLTRH-STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 599 ~l~~r~-gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.+..+. .++|+||+|+||||+.+.+.+.+.
T Consensus 38 ~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 38 GLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 334434 588999999999999999988765
No 263
>PRK10436 hypothetical protein; Provisional
Probab=93.39 E-value=0.42 Score=55.00 Aligned_cols=37 Identities=24% Similarity=0.522 Sum_probs=28.1
Q ss_pred HHHHHHHhhccce-EEEEecCCCChhHHHHHHHHHhcc
Q psy17620 593 VVQMYETMLTRHS-TMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 593 v~qL~e~l~~r~g-v~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
+..+.+++...+| |++.|||||||||.+..+.+.+..
T Consensus 207 ~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~~ 244 (462)
T PRK10436 207 LAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTLNT 244 (462)
T ss_pred HHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHhhCC
Confidence 4556666766776 669999999999998777666654
No 264
>KOG0991|consensus
Probab=93.37 E-value=0.078 Score=54.96 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.0
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.+-..+++.||||+||||++.+|+..+
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 334467899999999999999999885
No 265
>PRK14528 adenylate kinase; Provisional
Probab=93.37 E-value=0.063 Score=53.99 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=21.6
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-+++.|||||||||+.+.|++.++
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998864
No 266
>PRK00625 shikimate kinase; Provisional
Probab=93.35 E-value=0.064 Score=53.52 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.8
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.|+|+|.|||||||+-+.|++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998864
No 267
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.34 E-value=0.06 Score=53.47 Aligned_cols=106 Identities=19% Similarity=0.296 Sum_probs=53.7
Q ss_pred EEEEecCCCChhHHHHHHHHHhccCCCCe-----------------EEEEeCCCccccccccccccCCCCCc---ccChH
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVLGYPA-----------------RTYTLNPKAVSVIELYGVLNPETRDW---YDGLL 665 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~-----------------~~~~inpka~t~~eLyG~~d~~t~eW---~DGvl 665 (741)
++|.|+||+||||+++-+.+.+...+.++ .+..+... ....+...+. .... +.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g---~~~~la~~~~-~~~~~vgky~v~ 77 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSG---EEAILARVDF-RSGPRVGKYFVD 77 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS----EEEEEETTS-S-SCECTTCEE-
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceEEEEEEECcCC---Cccccccccc-cccccCCCEEEc
Confidence 78999999999999999999885433221 11122100 0111222220 0111 12233
Q ss_pred HHHHHHhcCC-CCCCCCCCeEEEEc--CCC---ChhhhhhccccccCCcee--eccCC
Q psy17620 666 SNIFRAVNKP-LDPGSKERKYILFD--GDV---DALWIENMNSVMDDNKIL--TLANG 715 (741)
Q Consensus 666 s~i~R~~~~~-~~~~~~~~~WIVfD--G~v---d~~wiE~LNsvLDdnk~L--~L~nG 715 (741)
...+-+.... .+.......+||+| |++ .+.|.+.+..+||.++-+ +++..
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~ 135 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLDSNKPVIGVVHKR 135 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHCTTSEEEEE--SS
T ss_pred HHHHHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 3333332111 11000245799999 886 578999999999977543 44444
No 268
>PRK13764 ATPase; Provisional
Probab=93.33 E-value=0.1 Score=61.59 Aligned_cols=31 Identities=29% Similarity=0.434 Sum_probs=26.7
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTSTVLG 631 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~ 631 (741)
..+.+++++|||||||||+.+.|+..+...+
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~~~~ 285 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYADMG 285 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 4578999999999999999999998876543
No 269
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.32 E-value=0.12 Score=50.64 Aligned_cols=29 Identities=41% Similarity=0.670 Sum_probs=24.4
Q ss_pred EEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVLGYPA 634 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~ 634 (741)
+.++|++||||||+++.|...+...|.++
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V 30 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRV 30 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 67899999999999999999987655443
No 270
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.31 E-value=0.059 Score=60.80 Aligned_cols=27 Identities=26% Similarity=0.591 Sum_probs=23.8
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...||+|+||||||||++.+.++....
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 356999999999999999999998753
No 271
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.29 E-value=0.15 Score=55.92 Aligned_cols=28 Identities=14% Similarity=0.168 Sum_probs=25.7
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...|+.++.||+|+|||++.+.+++++.
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 5678999999999999999999999974
No 272
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.29 E-value=0.052 Score=62.92 Aligned_cols=27 Identities=22% Similarity=0.555 Sum_probs=24.3
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...|++|+||||||||++.+.+++.+.
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 457999999999999999999998874
No 273
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=93.27 E-value=0.25 Score=50.77 Aligned_cols=126 Identities=14% Similarity=0.214 Sum_probs=45.3
Q ss_pred HHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc---cccccccccccCCCCCcccChH-------
Q psy17620 596 MYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA---VSVIELYGVLNPETRDWYDGLL------- 665 (741)
Q Consensus 596 L~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka---~t~~eLyG~~d~~t~eW~DGvl------- 665 (741)
..+++....-|++.||+|||||.+.-..+..+-.-|.--++....|-. -+..-|-|..+.....|-..+.
T Consensus 12 ~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~ 91 (205)
T PF02562_consen 12 ALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELF 91 (205)
T ss_dssp HHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS
T ss_pred HHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 345555788999999999999988544443221113323344444433 2223344544333334533322
Q ss_pred -----HHHHHHhc------CCCCCCCCCCeEEEEcC--CCChh-hhhhccccccCCceeeccCCCeeecC
Q psy17620 666 -----SNIFRAVN------KPLDPGSKERKYILFDG--DVDAL-WIENMNSVMDDNKILTLANGERIRLL 721 (741)
Q Consensus 666 -----s~i~R~~~------~~~~~~~~~~~WIVfDG--~vd~~-wiE~LNsvLDdnk~L~L~nGeri~l~ 721 (741)
..++.+.. .-.++.+-++.+|++|- .+.+. +-.-|..+=++.|++++.+-..+..|
T Consensus 92 ~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 92 GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp -TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE--------
T ss_pred ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcccCCCcEEEEecCceeecCC
Confidence 22221110 00123344678999993 34553 33333343345566666554444443
No 274
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.26 E-value=0.27 Score=53.59 Aligned_cols=86 Identities=21% Similarity=0.349 Sum_probs=54.2
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK 681 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~ 681 (741)
...|++|.||+|+|||.+..+++..+...|.++.+..+ .+++-.+- ..+.||-+...++.+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~-------~~l~~~lk---~~~~~~~~~~~l~~l~-------- 216 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF-------PEFIRELK---NSISDGSVKEKIDAVK-------- 216 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH-------HHHHHHHH---HHHhcCcHHHHHHHhc--------
Confidence 35699999999999999999999998766666554433 12322221 1234554556666553
Q ss_pred CCeEEEEc--CCC-Chhhh--hhcccccc
Q psy17620 682 ERKYILFD--GDV-DALWI--ENMNSVMD 705 (741)
Q Consensus 682 ~~~WIVfD--G~v-d~~wi--E~LNsvLD 705 (741)
....+|+| |-- -..|. |-|..+++
T Consensus 217 ~~dlLiIDDiG~e~~s~~~~~~ll~~Il~ 245 (306)
T PRK08939 217 EAPVLMLDDIGAEQMSSWVRDEVLGVILQ 245 (306)
T ss_pred CCCEEEEecCCCccccHHHHHHHHHHHHH
Confidence 34699999 432 23464 34566665
No 275
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.25 E-value=0.1 Score=57.27 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=23.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.|+.+++||+|+|||++.+.+++++.
T Consensus 36 ~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 36 AHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 47889999999999999999999974
No 276
>PRK06761 hypothetical protein; Provisional
Probab=93.25 E-value=0.082 Score=56.83 Aligned_cols=33 Identities=24% Similarity=0.212 Sum_probs=27.0
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPART 636 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~ 636 (741)
+-+++.|+|||||||+.+.|++.+...|..+..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 468999999999999999999998765544443
No 277
>PF12846 AAA_10: AAA-like domain
Probab=93.22 E-value=0.094 Score=55.47 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=22.2
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVL 630 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~ 630 (741)
..++++|+||||||++++.+...+-..
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~ 28 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRR 28 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 457889999999999999988765443
No 278
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.21 E-value=0.071 Score=53.07 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=23.2
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..++|+|++|+||||+=+.|+++++
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~ 27 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALN 27 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcC
Confidence 4689999999999999999999985
No 279
>CHL00181 cbbX CbbX; Provisional
Probab=93.21 E-value=0.069 Score=57.59 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.8
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLG 631 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~ 631 (741)
.+++.||||+|||++.+.+++.+..+|
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g 87 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLG 87 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 489999999999999999999876554
No 280
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.16 E-value=0.069 Score=54.78 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=21.3
Q ss_pred EEEEecCCCChhHHHHHHHHHhc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
|+|.|||||||||+.+.|++.++
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998864
No 281
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.14 E-value=0.068 Score=54.86 Aligned_cols=26 Identities=31% Similarity=0.644 Sum_probs=22.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.+...-+.|||||||||++++|....
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHHHhhc
Confidence 45677899999999999999988653
No 282
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.13 E-value=0.078 Score=52.79 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=57.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKER 683 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~ 683 (741)
-.++++||||+|||.+.+.|++.+.. +......++|-...+. .-|. +-.++..+........ ....
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~-----~~~~------~~~~~~l~~~~~~~v~--~~~~ 69 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE-----GDDV------ESSVSKLLGSPPGYVG--AEEG 69 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS-----HHHC------SCHCHHHHHHTTCHHH--HHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc-----cchH------Hhhhhhhhhcccceee--ccch
Confidence 36889999999999999999999852 2233555555444443 0000 1112222221100000 0011
Q ss_pred eEEEEcCC--CCh-----------hhhhhccccccCCceeeccCCCeeecCC
Q psy17620 684 KYILFDGD--VDA-----------LWIENMNSVMDDNKILTLANGERIRLLA 722 (741)
Q Consensus 684 ~WIVfDG~--vd~-----------~wiE~LNsvLDdnk~L~L~nGeri~l~~ 722 (741)
--|+||-- +++ ..-..|-.+||+ ..++-..|..+.+.+
T Consensus 70 gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~-g~~~d~~g~~vd~~n 120 (171)
T PF07724_consen 70 GVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEG-GTLTDSYGRTVDTSN 120 (171)
T ss_dssp TEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHH-SEEEETTCCEEEGTT
T ss_pred hhhhhHHHhhccccccccchhhHHHHHHHHHHHhcc-cceecccceEEEeCC
Confidence 28888822 455 555566666775 466777887777654
No 283
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=93.10 E-value=0.35 Score=57.14 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=29.0
Q ss_pred HHHHHHHhhccceE-EEEecCCCChhHHHHHHHHHhcc
Q psy17620 593 VVQMYETMLTRHST-MIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 593 v~qL~e~l~~r~gv-~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
+..+.+++...+|+ +++|||||||||.+..+.+.++.
T Consensus 305 ~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~~~~ 342 (564)
T TIGR02538 305 KALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILNT 342 (564)
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHhhCC
Confidence 55677777777775 69999999999999887777653
No 284
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.02 E-value=0.11 Score=58.53 Aligned_cols=26 Identities=31% Similarity=0.608 Sum_probs=23.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.++|+|+||||+|||++.+.|++.++
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~ 72 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLAN 72 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999874
No 285
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.02 E-value=0.11 Score=51.26 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=28.2
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 643 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka 643 (741)
..+.++|+|||||||+.+.|+..+...|. .+..++...
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~--~v~~id~D~ 42 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGY--PVEVLDGDA 42 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCC--eEEEEcCcc
Confidence 46789999999999999999998864433 334444443
No 286
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=93.01 E-value=0.1 Score=58.69 Aligned_cols=183 Identities=20% Similarity=0.326 Sum_probs=104.5
Q ss_pred cccccCCCCCceeccchhHHHHHHHHHHHcccCCCCCCCCHHHHHHHHHHhhhcCcceeeccc--ccCChhhHHHHHHHH
Q psy17620 368 GYEYMGLNGRLVITPLTDRIYLTITQALSMRLGAAPAGMDFLAFGKILSGLSQCGAWGCFDEF--NRIDVSVLSVISTQL 445 (741)
Q Consensus 368 gyEYlG~~~rLViTPLTdRc~~tl~~Al~~~~GGap~~~d~~~~~ri~~Glaq~GaW~cfDEf--nrl~~~vLSvva~qi 445 (741)
.++|++...+..-+ -.++.|--=|.++|++-|-.|-+- --.-|.|-.-. + .-++.+-|+-+|..|
T Consensus 127 ev~yl~p~~~~~~~-~ie~fFd~~TMSvHLKeg~~P~aK-----------~GkpG~~k~v~-l~d~pl~~~ele~ia~eI 193 (604)
T COG1855 127 EVEYLEPVEEPEEV-RIEEFFDEETMSVHLKEGVPPMAK-----------KGKPGEWKLVR-LSDKPLTREELEEIAREI 193 (604)
T ss_pred eEEEeCCccchhhc-cHHHhcCCcceEEeeccCCCcccc-----------cCCCCcEEEEE-cCCccCCHHHHHHHHHHH
Confidence 35788885554444 567777777888888888777511 12335553320 0 012233344443332
Q ss_pred HHHHHHHhhcCceeEee--cceEEecCCceEEEeccCCCCCCCCchHHHhhcceeeeccCCCHHHHHHHHHhhcCccchH
Q psy17620 446 LTIRTALLINATRFQFE--GHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAK 523 (741)
Q Consensus 446 ~~I~~al~~~~~~~~~~--g~~i~l~~~~~iFiTmNpgy~gr~eLP~nLk~lFRpvam~~PD~~~I~ei~L~s~GF~~a~ 523 (741)
|..|-+...+.+.++ |.+|--..++.|-||--| +.-+-|+ ..-|||.-.
T Consensus 194 --i~~a~~~~~sfIEi~r~GatVvQlrn~RIvIarPP-fSd~~EI-----TavRPvvk~--------------------- 244 (604)
T COG1855 194 --IERAKRDPDSFIEIDRPGATVVQLRNYRIVIARPP-FSDRWEI-----TAVRPVVKL--------------------- 244 (604)
T ss_pred --HHHHhhCcCceEEEccCCceEEEeccEEEEEecCC-CCCceEE-----EEEeeeEEe---------------------
Confidence 234555555556665 677766788999999866 3333333 123443310
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccccchhhHHHHHHHhhHhHhhhccchHHHHHHHHHHhccCCCcchhhHHHHHHHhh-c
Q psy17620 524 VLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSEDVVQMYETML-T 602 (741)
Q Consensus 524 ~La~Kl~~l~~l~~e~ls~q~hydfgLRalksVL~~a~~l~~~~~~~~E~~~l~ral~~~~lPkl~~~Dv~qL~e~l~-~ 602 (741)
+-.+| || +| .|.+-|. .
T Consensus 245 ------------------~ledY--~L--------------------~d----------------------kl~eRL~er 262 (604)
T COG1855 245 ------------------SLEDY--GL--------------------SD----------------------KLKERLEER 262 (604)
T ss_pred ------------------chhhc--CC--------------------CH----------------------HHHHHHHhh
Confidence 00122 21 11 2223232 4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeE------EEEeCCCcccccccccccc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPAR------TYTLNPKAVSVIELYGVLN 654 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~------~~~inpka~t~~eLyG~~d 654 (741)
-.||++.||||+||||....|++-+...|.-++ --.+.|...-...|+|.+.
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy~~~GkiVKTmEsPRDl~v~~eITQYs~l~g~me 320 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFYASQGKIVKTMESPRDLQVSPEITQYSPLEGDME 320 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHHHhcCcEEeeccCcccccCChhhhhcccccCchh
Confidence 679999999999999999999999988775332 2334455555577888764
No 287
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=92.99 E-value=0.14 Score=56.55 Aligned_cols=36 Identities=28% Similarity=0.476 Sum_probs=28.6
Q ss_pred HHH-HHHHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 593 VVQ-MYETMLTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 593 v~q-L~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+.+ |..++..+..++++|++||||||+++.|...+.
T Consensus 167 ~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i~ 203 (340)
T TIGR03819 167 VARLLRAIVAARLAFLISGGTGSGKTTLLSALLALVA 203 (340)
T ss_pred HHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHccCC
Confidence 344 344556788999999999999999999887654
No 288
>PRK05439 pantothenate kinase; Provisional
Probab=92.96 E-value=0.2 Score=54.58 Aligned_cols=28 Identities=21% Similarity=0.112 Sum_probs=24.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVL 630 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~ 630 (741)
..-|.|.|+|||||||+.+.|+..++..
T Consensus 86 ~~iIgIaG~~gsGKSTla~~L~~~l~~~ 113 (311)
T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQALLSRW 113 (311)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 3357799999999999999999988754
No 289
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.92 E-value=0.11 Score=58.16 Aligned_cols=106 Identities=19% Similarity=0.219 Sum_probs=58.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc-ccccccccccCC--C--CCcccChHHHHHHHhcCCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV-SVIELYGVLNPE--T--RDWYDGLLSNIFRAVNKPLD 677 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~-t~~eLyG~~d~~--t--~eW~DGvls~i~R~~~~~~~ 677 (741)
...|+|+||+|+||||.+..|+..+...|.++-+...+|.-+ ..++|-.+.+.. . -.-.+.-+...++.+...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~-- 318 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE-- 318 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc--
Confidence 357889999999999999999988876566666666665432 223332211100 0 001223344555544321
Q ss_pred CCCCCCeEEEEcCC----CChhhhhhcccccc----CCceeecc
Q psy17620 678 PGSKERKYILFDGD----VDALWIENMNSVMD----DNKILTLA 713 (741)
Q Consensus 678 ~~~~~~~WIVfDG~----vd~~wiE~LNsvLD----dnk~L~L~ 713 (741)
.....|+.|.+ -|..-++.|..+++ +...|+|+
T Consensus 319 ---~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLs 359 (436)
T PRK11889 319 ---ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLS 359 (436)
T ss_pred ---cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEEC
Confidence 12468888843 23444555555543 34455554
No 290
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=92.92 E-value=0.064 Score=50.45 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=19.0
Q ss_pred EEEEecCCCChhHHHHHHHHH
Q psy17620 606 TMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a 626 (741)
|.++|++|+||||+++.|...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999998764
No 291
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=92.89 E-value=0.081 Score=52.96 Aligned_cols=25 Identities=28% Similarity=0.650 Sum_probs=22.2
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
+..++|+|||||||+|+.+.|.+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3578999999999999999998874
No 292
>PRK06851 hypothetical protein; Provisional
Probab=92.87 E-value=0.13 Score=57.17 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=27.6
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPA 634 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~ 634 (741)
..+.++|.|+||+||||+++.+.+++...|..+
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~V 61 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDV 61 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 466789999999999999999999987655443
No 293
>PRK12377 putative replication protein; Provisional
Probab=92.87 E-value=0.12 Score=54.60 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=28.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPART 636 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~ 636 (741)
..++++.||||+|||.+...++..+..-|..+.+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~ 134 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIV 134 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEE
Confidence 4689999999999999999999988765655543
No 294
>PLN02200 adenylate kinase family protein
Probab=92.86 E-value=0.08 Score=55.40 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=22.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..-++|+|+|||||||+.+.|++.++
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45689999999999999999998764
No 295
>PTZ00301 uridine kinase; Provisional
Probab=92.85 E-value=0.12 Score=53.23 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.6
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-|.|.|+|||||||+.+.|++.+.
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHH
Confidence 4578999999999999999987764
No 296
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.84 E-value=0.066 Score=52.25 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=17.8
Q ss_pred EEEEecCCCChhHHHHHHHHH
Q psy17620 606 TMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a 626 (741)
|.|.|++||||||+++.|++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999977
No 297
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=92.83 E-value=0.21 Score=56.73 Aligned_cols=117 Identities=19% Similarity=0.256 Sum_probs=73.0
Q ss_pred HHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc----cccccccccCC-CC--CcccChHHHHHH
Q psy17620 598 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGVLNPE-TR--DWYDGLLSNIFR 670 (741)
Q Consensus 598 e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t----~~eLyG~~d~~-t~--eW~DGvls~i~R 670 (741)
+......+|+|.|++|+||+++.+.+......-+. ....+|..+++ ..+|||..... ++ .-..|.+.
T Consensus 157 ~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~--~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---- 230 (445)
T TIGR02915 157 KIAPSDITVLLLGESGTGKEVLARALHQLSDRKDK--RFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIE---- 230 (445)
T ss_pred HHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCC--CeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCcee----
Confidence 44456789999999999999999998876543222 24566666654 35677764211 00 11122211
Q ss_pred HhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620 671 AVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH 731 (741)
Q Consensus 671 ~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~ 731 (741)
...+--++|| +.+++..-..|-.+|.++..-.+...+ ..+.++|+|+-++
T Consensus 231 ---------~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~--~~~~~~rii~~~~ 282 (445)
T TIGR02915 231 ---------YAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGRE--EIPVDVRIVCATN 282 (445)
T ss_pred ---------ECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCc--eeeeceEEEEecC
Confidence 1123457888 557888888888888877655544433 4556889988664
No 298
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.83 E-value=0.079 Score=53.23 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHHh
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.-++|.||||+||||+++.|.+..
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 347899999999999999999886
No 299
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=92.83 E-value=0.067 Score=54.47 Aligned_cols=27 Identities=30% Similarity=0.589 Sum_probs=23.2
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+.+.|+||+||||||++++++..+.
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 355688999999999999999998753
No 300
>PRK06620 hypothetical protein; Validated
Probab=92.82 E-value=0.08 Score=54.61 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=20.9
Q ss_pred ceEEEEecCCCChhHHHHHHHHHh
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
..++|+||||||||++.+++++..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 459999999999999999877654
No 301
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.81 E-value=0.13 Score=61.18 Aligned_cols=47 Identities=23% Similarity=0.460 Sum_probs=35.3
Q ss_pred hccCCCcchhh-------HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 582 DMNLPKFVSED-------VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 582 ~~~lPkl~~~D-------v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+..+|....++ +..|......++.++++||||+|||++.+.+++.+.
T Consensus 22 ~~~~~~~~~~~vigq~~a~~~L~~~~~~~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 22 DIEVPERLIDQVIGQEHAVEVIKKAAKQRRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ecccCcccHHHcCChHHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 34455544444 334556667788999999999999999999998864
No 302
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=92.81 E-value=0.087 Score=52.62 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.2
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+.++|++||||||+.+.|+..+.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4588999999999999999998764
No 303
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=92.81 E-value=0.22 Score=48.04 Aligned_cols=47 Identities=23% Similarity=0.371 Sum_probs=29.9
Q ss_pred HHHHhhccceEEEEecCCCChhHHHHHHHHH-hccCCCCeEEEEeCCCc
Q psy17620 596 MYETMLTRHSTMIVGPTGGGKSVVINALVKT-STVLGYPARTYTLNPKA 643 (741)
Q Consensus 596 L~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a-~~~~~~~~~~~~inpka 643 (741)
.++.+...+.+++.||+|+|||.++-..+-. +.. +.+..+.++.|..
T Consensus 7 ~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~-~~~~~~lii~P~~ 54 (169)
T PF00270_consen 7 AIEAIISGKNVLISAPTGSGKTLAYILPALNRLQE-GKDARVLIIVPTR 54 (169)
T ss_dssp HHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHT-TSSSEEEEEESSH
T ss_pred HHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhcc-CCCceEEEEeecc
Confidence 4455556677999999999999998754432 211 1223555566644
No 304
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=92.78 E-value=0.069 Score=50.80 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=29.0
Q ss_pred HHHHHHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 594 VQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 594 ~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.|+.+....+.+|+|.|++||||+++.+.+.....
T Consensus 12 ~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 12 RQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp HHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred HHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 36777778899999999999999999998887643
No 305
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.77 E-value=0.28 Score=59.79 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=30.3
Q ss_pred HHHHHHHhhc--cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 593 VVQMYETMLT--RHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 593 v~qL~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
+.++.+.+.. ...++|+||||+|||++.+.|+..+..
T Consensus 191 i~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 191 LERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 6677776654 458999999999999999999998643
No 306
>PRK06921 hypothetical protein; Provisional
Probab=92.77 E-value=0.32 Score=51.86 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=27.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccC-CCCe
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVL-GYPA 634 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~-~~~~ 634 (741)
...+++++||||+|||.+...+++.+... |..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v 149 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPV 149 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceE
Confidence 46789999999999999999999887554 4443
No 307
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.74 E-value=0.15 Score=52.78 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=26.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEe
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTL 639 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~i 639 (741)
.+++|.||+|+|||.+++.++..........++..+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~ 70 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL 70 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceee
Confidence 479999999999999999999887654333344333
No 308
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.70 E-value=0.13 Score=59.76 Aligned_cols=25 Identities=28% Similarity=0.640 Sum_probs=22.6
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
..|++|+||||||||++.+.++...
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999998764
No 309
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.70 E-value=0.39 Score=52.80 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=29.0
Q ss_pred HHHHHhhccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
+.++.-...|+.++.||+|+||+++.+.+++++..
T Consensus 16 ~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC 50 (325)
T PRK06871 16 QAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC 50 (325)
T ss_pred HHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC
Confidence 34444456899999999999999999999999853
No 310
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.67 E-value=0.085 Score=53.83 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.8
Q ss_pred eEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
=|++.|+|||||||..+-|+++++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHH
Confidence 3789999999999999999999874
No 311
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=92.66 E-value=0.15 Score=48.17 Aligned_cols=35 Identities=14% Similarity=0.389 Sum_probs=29.5
Q ss_pred HHHHHhhccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 595 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 595 qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
.|-+.+.....|+|.|+-|+||||..|.++++++.
T Consensus 7 ~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 7 KLAQILKPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp HHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred HHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 45677788889999999999999999999999853
No 312
>KOG0054|consensus
Probab=92.66 E-value=0.17 Score=64.59 Aligned_cols=124 Identities=23% Similarity=0.344 Sum_probs=76.8
Q ss_pred hhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccc--------------ccc----ccCCCCCcc
Q psy17620 600 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIEL--------------YGV----LNPETRDWY 661 (741)
Q Consensus 600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eL--------------yG~----~d~~t~eW~ 661 (741)
.+-+.-|-|||.|||||||++.+|-+-....+..+.+--+|-..+...+| =|. +||- .+++
T Consensus 1163 I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf-~e~s 1241 (1381)
T KOG0054|consen 1163 IKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF-DEYS 1241 (1381)
T ss_pred EcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcc-cccC
Confidence 34456688999999999999999988765433233332233333333332 122 4663 5777
Q ss_pred cChHHHHHHHhcC-----CC---------C-CCC----------------CCCeEEEEc---CCCChh------------
Q psy17620 662 DGLLSNIFRAVNK-----PL---------D-PGS----------------KERKYILFD---GDVDAL------------ 695 (741)
Q Consensus 662 DGvls~i~R~~~~-----~~---------~-~~~----------------~~~~WIVfD---G~vd~~------------ 695 (741)
|.-+=.++.++.- .. + |++ .+.|.+|+| -.||+.
T Consensus 1242 D~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~ 1321 (1381)
T KOG0054|consen 1242 DDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREE 1321 (1381)
T ss_pred HHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHH
Confidence 7655444444310 00 1 111 357999999 346643
Q ss_pred --------hhhhccccccCCceeeccCCCeeecCCCc
Q psy17620 696 --------WIENMNSVMDDNKILTLANGERIRLLAHC 724 (741)
Q Consensus 696 --------wiE~LNsvLDdnk~L~L~nGeri~l~~~~ 724 (741)
-...||||+|-.|+|.|.+|+.......-
T Consensus 1322 F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1322 FKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPA 1358 (1381)
T ss_pred hcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChH
Confidence 34678999999999999999988765443
No 313
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.65 E-value=0.085 Score=54.57 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=24.1
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
....+.|+||+||||||++++|+..+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 57 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLERP 57 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4567889999999999999999987643
No 314
>PRK08727 hypothetical protein; Validated
Probab=92.64 E-value=0.14 Score=53.49 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=26.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPART 636 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~ 636 (741)
...++|+||+|+|||.+.+.++.+....|.++.+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y 74 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAY 74 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 4579999999999999999998876554544433
No 315
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=92.64 E-value=0.091 Score=51.18 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.0
Q ss_pred eEEEEecCCCChhHHHHHHHHHh
Q psy17620 605 STMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
-|+|.|++||||||+.+.|++.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999875
No 316
>KOG1970|consensus
Probab=92.61 E-value=0.14 Score=58.94 Aligned_cols=44 Identities=27% Similarity=0.317 Sum_probs=31.2
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccccccccc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGV 652 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~ 652 (741)
-.+|.||+||||||.+++|++.++ .+ ...-+||-.....+..+.
T Consensus 112 iLLltGPsGcGKSTtvkvLskelg---~~-~~Ew~Npi~~~~~~~~h~ 155 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTVKVLSKELG---YQ-LIEWSNPINLKEPENLHN 155 (634)
T ss_pred EEEEeCCCCCCchhHHHHHHHhhC---ce-eeeecCCccccccccccc
Confidence 566899999999999999999874 22 234566666554444443
No 317
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=92.57 E-value=0.089 Score=60.02 Aligned_cols=27 Identities=22% Similarity=0.582 Sum_probs=23.7
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...||+|+||||||||++.+.++..+.
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~ 242 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETS 242 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 356899999999999999999998753
No 318
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.57 E-value=0.081 Score=52.95 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.2
Q ss_pred cceEEEEecCCCChhHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALV 624 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~ 624 (741)
..-+.|+||+||||||+++++.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4467899999999999999985
No 319
>PRK13975 thymidylate kinase; Provisional
Probab=92.55 E-value=0.097 Score=52.46 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-|++.|++||||||+.+.|++.+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999999985
No 320
>PRK14974 cell division protein FtsY; Provisional
Probab=92.54 E-value=0.12 Score=56.99 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=27.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPART 636 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~ 636 (741)
...++++||+|+||||.+..|+..+...|.++-+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~l 173 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVI 173 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 3578899999999999999999988766554444
No 321
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=92.53 E-value=0.08 Score=51.43 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=21.3
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
+.-|+++|++|+||||+++.+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 456999999999999999999864
No 322
>PLN02796 D-glycerate 3-kinase
Probab=92.51 E-value=0.15 Score=56.15 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=23.9
Q ss_pred EEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVLGYP 633 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~ 633 (741)
|-|+|++||||||+.+.|...+...+..
T Consensus 103 IGI~G~sGSGKSTLa~~L~~lL~~~g~~ 130 (347)
T PLN02796 103 IGISAPQGCGKTTLVFALVYLFNATGRR 130 (347)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcccCCc
Confidence 7899999999999999999998654433
No 323
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=92.49 E-value=0.088 Score=56.56 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHHh
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.-|+++|+|||||||+.+.|++.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 458899999999999999999886
No 324
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=92.49 E-value=0.084 Score=54.20 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=23.1
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++++....
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 355788999999999999999998653
No 325
>KOG2228|consensus
Probab=92.47 E-value=0.19 Score=54.76 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=36.8
Q ss_pred hhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc
Q psy17620 600 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS 645 (741)
Q Consensus 600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t 645 (741)
+...+.|+++||.|||||.++..-..-....|.+.-...+||.-.+
T Consensus 46 ~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~ 91 (408)
T KOG2228|consen 46 HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQT 91 (408)
T ss_pred hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchh
Confidence 4557899999999999999987754444556777888899998777
No 326
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.47 E-value=0.078 Score=54.22 Aligned_cols=27 Identities=37% Similarity=0.548 Sum_probs=23.3
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++++..+.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 355788999999999999999998764
No 327
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=92.47 E-value=0.088 Score=52.19 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.2
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|.||+||||||+.|.++...+
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhccC
Confidence 34578999999999999999997654
No 328
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=92.46 E-value=0.13 Score=58.58 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=31.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP 641 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp 641 (741)
...|+++|++|+||||+...|+..+...|.++.+...++
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 457899999999999999999998877666666555554
No 329
>KOG0055|consensus
Probab=92.46 E-value=0.092 Score=65.60 Aligned_cols=33 Identities=30% Similarity=0.474 Sum_probs=28.4
Q ss_pred HhhccceEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620 599 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLG 631 (741)
Q Consensus 599 ~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~ 631 (741)
.....+.|-||||+||||||++..|.+-+...+
T Consensus 1012 ~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~ 1044 (1228)
T KOG0055|consen 1012 SIRAGQTVALVGPSGSGKSTVISLLERFYDPDA 1044 (1228)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 345678999999999999999999999987653
No 330
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.40 E-value=0.15 Score=57.38 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=29.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhcc----CCCCeEEEEeCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTV----LGYPARTYTLNP 641 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~----~~~~~~~~~inp 641 (741)
..|+++||+|+||||.+.-|+..+.. -|.++.+..+++
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt 216 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN 216 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC
Confidence 47889999999999999999987653 245666666665
No 331
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.40 E-value=0.11 Score=50.94 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+.++|+|++||||||+-+.|++.++
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999874
No 332
>PRK14526 adenylate kinase; Provisional
Probab=92.38 E-value=0.1 Score=53.76 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.9
Q ss_pred EEEEecCCCChhHHHHHHHHHhc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
++|+|||||||||..+.|++.++
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~ 25 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELN 25 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998764
No 333
>PRK13946 shikimate kinase; Provisional
Probab=92.35 E-value=0.11 Score=52.03 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...|+|+|.+||||||+-+.|++.++
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999999874
No 334
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.34 E-value=0.11 Score=61.69 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=25.9
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
...|+++++||+|+||||+.+.+++++..
T Consensus 35 rl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 35 RLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34689999999999999999999999864
No 335
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=92.34 E-value=0.081 Score=55.03 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=23.2
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 455788999999999999999997653
No 336
>PRK01184 hypothetical protein; Provisional
Probab=92.31 E-value=0.1 Score=51.97 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=17.0
Q ss_pred eEEEEecCCCChhHHHHHHHHH
Q psy17620 605 STMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a 626 (741)
-|+|+|||||||||+-+ +++.
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 47899999999999876 4443
No 337
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=92.31 E-value=0.1 Score=50.18 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.4
Q ss_pred eEEEEecCCCChhHHHHHHHHH
Q psy17620 605 STMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a 626 (741)
-|+++|++|+||||+++.+...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998753
No 338
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.31 E-value=0.092 Score=53.45 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=21.2
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-+.|+||+||||||++++++..+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999998654
No 339
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.31 E-value=0.16 Score=56.76 Aligned_cols=100 Identities=13% Similarity=0.038 Sum_probs=59.3
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc-ccc--cccccCCC--CCcccChHHHHHHHhcCCC
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV-IEL--YGVLNPET--RDWYDGLLSNIFRAVNKPL 676 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~-~eL--yG~~d~~t--~eW~DGvls~i~R~~~~~~ 676 (741)
....++++||+|+||||++..|+..+...|.++-+...+|--... ++| |+...... ..-...-+..+++.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~-- 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY-- 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh--
Confidence 356789999999999999999998775556666666676653311 122 22211100 00011223444444421
Q ss_pred CCCCCCCeEEEEcCC----CChhhhhhccccccC
Q psy17620 677 DPGSKERKYILFDGD----VDALWIENMNSVMDD 706 (741)
Q Consensus 677 ~~~~~~~~WIVfDG~----vd~~wiE~LNsvLDd 706 (741)
......|+.|.+ .|..+++-|..+++.
T Consensus 283 ---~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~ 313 (407)
T PRK12726 283 ---VNCVDHILIDTVGRNYLAEESVSEISAYTDV 313 (407)
T ss_pred ---cCCCCEEEEECCCCCccCHHHHHHHHHHhhc
Confidence 123579999933 578888888776653
No 340
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=92.30 E-value=0.1 Score=48.98 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=19.1
Q ss_pred EEEEecCCCChhHHHHHHHHH
Q psy17620 606 TMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a 626 (741)
|+++|++|+||||+++.+...
T Consensus 3 i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998755
No 341
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=92.29 E-value=0.097 Score=49.61 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=18.9
Q ss_pred EEEEecCCCChhHHHHHHHHH
Q psy17620 606 TMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a 626 (741)
|+++|++|+|||++++.+...
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998754
No 342
>PRK08356 hypothetical protein; Provisional
Probab=92.29 E-value=0.1 Score=52.78 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=18.6
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q psy17620 605 STMIVGPTGGGKSVVINALVK 625 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~ 625 (741)
-++|+|||||||||+.+.|.+
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477999999999999999953
No 343
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.27 E-value=0.25 Score=57.54 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=24.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
.|.++++||||+||||+.+.+++++..
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 477899999999999999999999864
No 344
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=92.26 E-value=0.1 Score=49.58 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.4
Q ss_pred eEEEEecCCCChhHHHHHHHHH
Q psy17620 605 STMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a 626 (741)
-|+++|++|+||||+++.+...
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998753
No 345
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=92.26 E-value=0.46 Score=57.78 Aligned_cols=99 Identities=14% Similarity=0.236 Sum_probs=54.4
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc---ccccccccCCC----CCcccChHHHHHHHhc
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVLNPET----RDWYDGLLSNIFRAVN 673 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~---~eLyG~~d~~t----~eW~DGvls~i~R~~~ 673 (741)
..+.-++|.|+||+||||+++.+.+++...+....+....|..-.. .+.-|. ...| ..|..+-.. .+ +
T Consensus 336 ~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~-~a~Tih~lL~~~~~~~~--~~--~ 410 (720)
T TIGR01448 336 IQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGL-TASTIHRLLGYGPDTFR--HN--H 410 (720)
T ss_pred HhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCC-ccccHHHHhhccCCccc--hh--h
Confidence 3456788999999999999999999887765223444455542221 222221 1111 011111000 00 0
Q ss_pred CCCCCCCCCCeEEEEc--CCCChhhhhhccccccCC
Q psy17620 674 KPLDPGSKERKYILFD--GDVDALWIENMNSVMDDN 707 (741)
Q Consensus 674 ~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdn 707 (741)
. ........+|.| +-+|......|-+.+.++
T Consensus 411 ~---~~~~~~~llIvDEaSMvd~~~~~~Ll~~~~~~ 443 (720)
T TIGR01448 411 L---EDPIDCDLLIVDESSMMDTWLALSLLAALPDH 443 (720)
T ss_pred h---hccccCCEEEEeccccCCHHHHHHHHHhCCCC
Confidence 0 012345799999 778887777765555433
No 346
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.25 E-value=0.11 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.0
Q ss_pred EEEEecCCCChhHHHHHHHHHhc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
|-+-|||||||||+-+.|++.++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 66889999999999999999874
No 347
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=92.25 E-value=0.14 Score=55.26 Aligned_cols=28 Identities=21% Similarity=0.117 Sum_probs=23.6
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVL 630 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~ 630 (741)
..-|.|.||+||||||+.+.|...+...
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3456799999999999999999888644
No 348
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.25 E-value=0.085 Score=53.90 Aligned_cols=27 Identities=22% Similarity=0.466 Sum_probs=23.1
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345678999999999999999998754
No 349
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.24 E-value=0.087 Score=53.41 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=23.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...-+.|+||+||||||++++++..+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345688999999999999999998654
No 350
>PRK04182 cytidylate kinase; Provisional
Probab=92.23 E-value=0.11 Score=51.02 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.6
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.|.|.|++||||||+-+.|++.++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999998863
No 351
>PRK07952 DNA replication protein DnaC; Validated
Probab=92.19 E-value=0.16 Score=53.57 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=27.2
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeE
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPAR 635 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~ 635 (741)
.+++|.|+||+|||.+...++..+...|.++.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~ 131 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVL 131 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 58999999999999999999998876555543
No 352
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.18 E-value=0.084 Score=52.88 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=23.8
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.....+.|+||+||||||++++++..+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 3456788999999999999999998754
No 353
>PRK14529 adenylate kinase; Provisional
Probab=92.18 E-value=0.11 Score=53.91 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.6
Q ss_pred EEEEecCCCChhHHHHHHHHHhc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
|+|+|||||||||..+.|++.++
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78999999999999999999875
No 354
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=92.18 E-value=0.097 Score=50.02 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=19.2
Q ss_pred EEEEecCCCChhHHHHHHHHH
Q psy17620 606 TMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a 626 (741)
|+++|++|+||||+++.+...
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999998755
No 355
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=92.16 E-value=0.1 Score=49.31 Aligned_cols=23 Identities=43% Similarity=0.501 Sum_probs=19.9
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|.++|++|+||||+++.+.+.
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999998653
No 356
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=92.14 E-value=0.089 Score=56.59 Aligned_cols=24 Identities=38% Similarity=0.657 Sum_probs=21.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
+-.+||+|++|+||||.+++|..+
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~ 27 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNS 27 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhc
Confidence 447999999999999999999876
No 357
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=92.14 E-value=0.091 Score=53.16 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=23.2
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345688999999999999999998764
No 358
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.13 E-value=0.091 Score=53.56 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=23.1
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++++..+.
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345688999999999999999998754
No 359
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.12 E-value=0.1 Score=53.10 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=22.8
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345678999999999999999998653
No 360
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.11 E-value=0.13 Score=59.06 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=24.6
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
.|..+++||+|+||||+.+.+++++..
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 567999999999999999999999864
No 361
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=92.10 E-value=0.096 Score=53.61 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=23.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345688999999999999999987754
No 362
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=92.08 E-value=0.17 Score=49.71 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=26.6
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeE
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPAR 635 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~ 635 (741)
..|.+.|.|||||||+-+.|.+.+...|.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~ 34 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVY 34 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 35789999999999999999999987765543
No 363
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.08 E-value=0.13 Score=58.15 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.9
Q ss_pred ceEEEEecCCCChhHHHHHHHHHh
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
+.++|+||||+||||+.+.+++..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998875
No 364
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.07 E-value=0.093 Score=53.50 Aligned_cols=27 Identities=19% Similarity=0.434 Sum_probs=23.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345688999999999999999998653
No 365
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=92.06 E-value=0.31 Score=53.00 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=25.2
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...|..+++||.|+|||++.+.+++++.
T Consensus 24 ~~~ha~Lf~G~~G~Gk~~la~~~a~~l~ 51 (313)
T PRK05564 24 RFSHAHIIVGEDGIGKSLLAKEIALKIL 51 (313)
T ss_pred CCCceEEeECCCCCCHHHHHHHHHHHHc
Confidence 4578999999999999999999999874
No 366
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.06 E-value=0.094 Score=53.32 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=22.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++|+..+.
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44678999999999999999998754
No 367
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.03 E-value=0.1 Score=54.96 Aligned_cols=27 Identities=19% Similarity=0.491 Sum_probs=21.9
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...-+.++|||||||||++|....-..
T Consensus 26 ~gef~vliGpSGsGKTTtLkMINrLie 52 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTLKMINRLIE 52 (309)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhcccC
Confidence 344578999999999999999876653
No 368
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=92.02 E-value=0.1 Score=53.02 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=23.4
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455688999999999999999998764
No 369
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.02 E-value=0.11 Score=51.42 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=23.2
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||+.++|+..+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 355688999999999999999998754
No 370
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.01 E-value=0.097 Score=51.99 Aligned_cols=27 Identities=22% Similarity=0.529 Sum_probs=23.1
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 355778999999999999999997654
No 371
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=91.99 E-value=0.11 Score=49.35 Aligned_cols=19 Identities=42% Similarity=0.546 Sum_probs=18.1
Q ss_pred EEEEecCCCChhHHHHHHH
Q psy17620 606 TMIVGPTGGGKSVVINALV 624 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~ 624 (741)
|.|+|++|+||||+++.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT 20 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 6899999999999999998
No 372
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.99 E-value=0.18 Score=54.18 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=24.6
Q ss_pred Hhhccce-EEEEecCCCChhHHHHHHHHHhccC
Q psy17620 599 TMLTRHS-TMIVGPTGGGKSVVINALVKTSTVL 630 (741)
Q Consensus 599 ~l~~r~g-v~lvGp~gsGKTt~~~~L~~a~~~~ 630 (741)
......| |++.|||||||||.+-.+...+++-
T Consensus 120 ~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~ 152 (353)
T COG2805 120 LAESPRGLILVTGPTGSGKSTTLAAMIDYINKH 152 (353)
T ss_pred HHhCCCceEEEeCCCCCcHHHHHHHHHHHHhcc
Confidence 3445555 5577999999999998888887754
No 373
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=91.98 E-value=0.23 Score=46.27 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=33.8
Q ss_pred EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV 644 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~ 644 (741)
+++.|.+|+|||++...|+..+...+.++.+...+|.++
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~~~~ 40 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADPDDL 40 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCchhh
Confidence 789999999999999999999887777888888888444
No 374
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=91.97 E-value=0.11 Score=52.12 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=22.9
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++++..+.
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345688999999999999999998654
No 375
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.96 E-value=0.41 Score=57.03 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=24.6
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..|..+++||+|+|||++.+.+++.+.
T Consensus 38 l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 38 LAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999975
No 376
>KOG0989|consensus
Probab=91.96 E-value=0.22 Score=53.63 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.2
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-.+++||||+|||++++++++++.
T Consensus 59 ~~LFyGPpGTGKTStalafar~L~ 82 (346)
T KOG0989|consen 59 HYLFYGPPGTGKTSTALAFARALN 82 (346)
T ss_pred eEEeeCCCCCcHhHHHHHHHHHhc
Confidence 345799999999999999999975
No 377
>PRK13948 shikimate kinase; Provisional
Probab=91.95 E-value=0.11 Score=52.30 Aligned_cols=29 Identities=21% Similarity=0.103 Sum_probs=24.6
Q ss_pred hhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 600 MLTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+.-...|+|+|.+||||||+-+.|++.++
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34446799999999999999999999864
No 378
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.94 E-value=0.11 Score=54.36 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.2
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..++-|+|+|||||||+.++|+.-..
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 34677999999999999999998654
No 379
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=91.92 E-value=0.14 Score=49.99 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=20.9
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.+||++.||||+||||+...|.+.
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 579999999999999998777665
No 380
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.92 E-value=0.11 Score=53.97 Aligned_cols=27 Identities=30% Similarity=0.524 Sum_probs=23.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345688999999999999999998754
No 381
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.88 E-value=0.099 Score=54.24 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=23.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 345688999999999999999997653
No 382
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=91.88 E-value=0.12 Score=60.41 Aligned_cols=29 Identities=28% Similarity=0.511 Sum_probs=25.6
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccC
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVL 630 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~ 630 (741)
.+..+.|+||||+|||++.+.|++++...
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 35678899999999999999999998754
No 383
>PRK08116 hypothetical protein; Validated
Probab=91.87 E-value=0.25 Score=52.80 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=27.1
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPA 634 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~ 634 (741)
.+.|++|.|++|+|||.+...+++.+...+.++
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v 145 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPV 145 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 346899999999999999999999876545444
No 384
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=91.86 E-value=0.13 Score=49.66 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.0
Q ss_pred eEEEEecCCCChhHHHHHHHHHh
Q psy17620 605 STMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.|+++|++|+||||+++.|....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhc
Confidence 37899999999999999987653
No 385
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=91.85 E-value=0.12 Score=49.43 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.5
Q ss_pred eEEEEecCCCChhHHHHHHHHH
Q psy17620 605 STMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a 626 (741)
-|+++|++|+||||+++.|...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 386
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=91.85 E-value=0.1 Score=53.14 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=23.2
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345688999999999999999998754
No 387
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=91.85 E-value=0.17 Score=51.23 Aligned_cols=35 Identities=17% Similarity=0.470 Sum_probs=27.4
Q ss_pred HHHHHHhhc--cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 594 VQMYETMLT--RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 594 ~qL~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.+|.+.+.. .+.++|+||.|+|||++++.+...+.
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 344444444 57899999999999999999888763
No 388
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=91.85 E-value=0.13 Score=54.14 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.1
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..-+.|+||+|||||++++++...+.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~ 50 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG 50 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 34578999999999999999987753
No 389
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=91.85 E-value=0.1 Score=53.43 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.1
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++++..+.
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345678999999999999999998754
No 390
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.83 E-value=0.1 Score=54.45 Aligned_cols=46 Identities=20% Similarity=0.115 Sum_probs=29.6
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIEL 649 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eL 649 (741)
..+-++|||||||||++|.+..-+....-.+.+.--|-..++..++
T Consensus 35 ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~ 80 (263)
T COG1127 35 EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEEL 80 (263)
T ss_pred cEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHH
Confidence 3567999999999999999887765433333333333334444333
No 391
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.82 E-value=0.098 Score=53.66 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=22.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++|+..+.
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44678999999999999999998753
No 392
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=91.81 E-value=0.1 Score=53.39 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.6
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..-+.|+||+||||||++++++....
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44588999999999999999998754
No 393
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.78 E-value=0.2 Score=50.75 Aligned_cols=28 Identities=36% Similarity=0.431 Sum_probs=23.9
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLG 631 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~ 631 (741)
..+.++|++||||||+.+.|+..+...|
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~~l~~~~ 52 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEALHELG 52 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 4678999999999999999999875443
No 394
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=91.75 E-value=0.2 Score=50.15 Aligned_cols=26 Identities=42% Similarity=0.572 Sum_probs=23.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
....++++|.||+||||+++.|....
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999998763
No 395
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.74 E-value=0.11 Score=52.23 Aligned_cols=25 Identities=24% Similarity=0.515 Sum_probs=21.7
Q ss_pred ccceEEEEecCCCChhHHHHHHHHH
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
....+.|+||+||||||++++|+..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3557889999999999999999864
No 396
>smart00350 MCM minichromosome maintenance proteins.
Probab=91.74 E-value=0.6 Score=54.44 Aligned_cols=107 Identities=24% Similarity=0.379 Sum_probs=59.8
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccccccccc--ccCCCCCcc--cChHHHHHHHhcCCCCCCC
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGV--LNPETRDWY--DGLLSNIFRAVNKPLDPGS 680 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~--~d~~t~eW~--DGvls~i~R~~~~~~~~~~ 680 (741)
.|+|+|+||+|||++.+.+++...+ ..++. -+..+...|-+. .|+.+++|. .|.+. .
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r-----~~~~~-~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~-------------~ 298 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPR-----AVYTT-GKGSSAVGLTAAVTRDPETREFTLEGGALV-------------L 298 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCc-----ceEcC-CCCCCcCCccccceEccCcceEEecCccEE-------------e
Confidence 6999999999999999999987532 11111 001111122221 233445553 33221 1
Q ss_pred CCCeEEEEc--CCCChhhhhhccccccCCceeecc-CCCeeecCCCceEEEEeC
Q psy17620 681 KERKYILFD--GDVDALWIENMNSVMDDNKILTLA-NGERIRLLAHCQLLFEIH 731 (741)
Q Consensus 681 ~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~-nGeri~l~~~~rliFE~~ 731 (741)
.++--+++| ..+++.-...|..+|++. .+++. .|....++..+++|.-+.
T Consensus 299 A~~Gil~iDEi~~l~~~~q~~L~e~me~~-~i~i~k~G~~~~l~~~~~viAa~N 351 (509)
T smart00350 299 ADNGVCCIDEFDKMDDSDRTAIHEAMEQQ-TISIAKAGITTTLNARCSVLAAAN 351 (509)
T ss_pred cCCCEEEEechhhCCHHHHHHHHHHHhcC-EEEEEeCCEEEEecCCcEEEEEeC
Confidence 234577777 345666667777777654 33333 466666666666665444
No 397
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=91.74 E-value=0.21 Score=57.10 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=27.3
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN 640 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~in 640 (741)
.+++|+||||+|||.+.+.++..+...+....+..++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4799999999999999999998865433233344443
No 398
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=91.73 E-value=0.12 Score=50.95 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=22.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..-+.|+||+||||||++++|+..+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC
Confidence 44688999999999999999998764
No 399
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=91.72 E-value=0.12 Score=53.15 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=22.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
...+.|+||+||||||++++++..+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4467899999999999999999987
No 400
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=91.71 E-value=0.12 Score=49.18 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.2
Q ss_pred eEEEEecCCCChhHHHHHHHHH
Q psy17620 605 STMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a 626 (741)
-|+++|+||+||||+++.|...
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998753
No 401
>PRK06835 DNA replication protein DnaC; Validated
Probab=91.68 E-value=0.19 Score=55.33 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=27.9
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCeE
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPAR 635 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~ 635 (741)
.+++++++||||+|||.+..++++.+-.-|..|.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~ 215 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVI 215 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 3589999999999999999999998765554443
No 402
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.68 E-value=0.11 Score=53.29 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++++..+.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45688999999999999999998653
No 403
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=91.65 E-value=0.14 Score=52.11 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.1
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
...++|+||+||||||++++++...
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH
Confidence 4578999999999999999998764
No 404
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=91.63 E-value=0.11 Score=52.71 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=22.9
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++++..+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 355688999999999999999987653
No 405
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=91.62 E-value=0.89 Score=51.95 Aligned_cols=112 Identities=14% Similarity=0.117 Sum_probs=67.1
Q ss_pred cCcceeecccccCChhh-HHHHHHHHHHHHHHHhhcCceeE--e---ecceEEecCCceEEEeccCCCCCCCCchHHHhh
Q psy17620 421 CGAWGCFDEFNRIDVSV-LSVISTQLLTIRTALLINATRFQ--F---EGHDIIMNNKVGIFITMNPGYAGRTELPESVKA 494 (741)
Q Consensus 421 ~GaW~cfDEfnrl~~~v-LSvva~qi~~I~~al~~~~~~~~--~---~g~~i~l~~~~~iFiTmNpgy~gr~eLP~nLk~ 494 (741)
.+.++++||+||.+.+- ..-+ +..+..-.+...-.+. + +++.+.+.+++.|+.|||....+-..+-..|+.
T Consensus 272 ~~~vliIDEINRani~kiFGel---~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR 348 (459)
T PRK11331 272 KKYVFIIDEINRANLSKVFGEV---MMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR 348 (459)
T ss_pred CCcEEEEehhhccCHHHhhhhh---hhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh
Confidence 57999999999998653 3333 2222211111111111 1 134678889999999999865555578899999
Q ss_pred cceeeeccCCCH--HHHHHHHHhhcCc--cchHHHHHHHHHHHHHHH
Q psy17620 495 LFRPVVCIVPDF--ELICQIMLFSEGF--LEAKVLAKKMAVLYKLSK 537 (741)
Q Consensus 495 lFRpvam~~PD~--~~I~ei~L~s~GF--~~a~~La~Kl~~l~~l~~ 537 (741)
.|+-|.|. ||+ ..+-..+ ...+- .....+++++..+-+..+
T Consensus 349 RF~fi~i~-p~~~~~~~~~~l-~~~~~~~~~~~~l~~~l~~LN~~I~ 393 (459)
T PRK11331 349 RFSFIDIE-PGFDTPQFRNFL-LNKKAEPSFVESLCQKMNELNQEIS 393 (459)
T ss_pred hhheEEec-CCCChHHHHHHH-HhcccCchhHHHHHHHHHHHHHHHH
Confidence 99888876 443 3333333 33332 123556666666655554
No 406
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.61 E-value=0.17 Score=59.25 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=28.0
Q ss_pred HHHHHhh---ccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 595 QMYETML---TRHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 595 qL~e~l~---~r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
+|...+. ..|..+++||+|+||||+.+.+++.+..
T Consensus 27 ~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 27 SLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444443 3577999999999999999999999863
No 407
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=91.59 E-value=0.12 Score=53.23 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=23.5
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455789999999999999999998764
No 408
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=91.59 E-value=0.12 Score=53.08 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++|+..+.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45688999999999999999998754
No 409
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=91.59 E-value=0.14 Score=50.21 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
+-|+|+|++|+||||+++.+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999998854
No 410
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.58 E-value=0.12 Score=52.11 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..-+.|+||+||||||++++|+..+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44678999999999999999998754
No 411
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.58 E-value=0.097 Score=54.87 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=23.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
...++|+|++||||||+++.|+..+..
T Consensus 30 Ge~~~i~G~nGsGKSTL~~~l~GLl~p 56 (235)
T COG1122 30 GERVLLIGPNGSGKSTLLKLLNGLLKP 56 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCcCcC
Confidence 447899999999999999999988754
No 412
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=91.55 E-value=0.12 Score=53.57 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=22.9
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 345688999999999999999997653
No 413
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=91.54 E-value=0.12 Score=53.62 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=22.3
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
....+.|+||+||||||++++|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568899999999999999999863
No 414
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=91.53 E-value=0.57 Score=55.52 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=24.8
Q ss_pred HHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 598 ETMLTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 598 e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.....++-.+|.|+||+||||++..+..++.
T Consensus 155 ~~al~~~~~vitGgpGTGKTt~v~~ll~~l~ 185 (586)
T TIGR01447 155 ALALKSNFSLITGGPGTGKTTTVARLLLALV 185 (586)
T ss_pred HHHhhCCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3444577889999999999999988877654
No 415
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=91.51 E-value=0.12 Score=52.76 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=23.1
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 345688999999999999999988754
No 416
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=91.51 E-value=0.13 Score=53.96 Aligned_cols=25 Identities=32% Similarity=0.654 Sum_probs=22.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
...+.|+||+||||||++++|+...
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 32 NQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568899999999999999999764
No 417
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.50 E-value=0.22 Score=54.62 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=30.7
Q ss_pred HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+.-|..+...+..+++.|-+||||||++++|.....
T Consensus 163 a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~ 198 (355)
T COG4962 163 AKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFID 198 (355)
T ss_pred HHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCC
Confidence 344777888899999999999999999999987653
No 418
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=91.49 E-value=0.14 Score=49.69 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
+..|+++|+||+||||+++.|.+.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcC
Confidence 456889999999999999999764
No 419
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=91.48 E-value=0.12 Score=53.57 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=23.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345688999999999999999998754
No 420
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=91.47 E-value=0.14 Score=49.39 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=19.3
Q ss_pred EEEEecCCCChhHHHHHHHHH
Q psy17620 606 TMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a 626 (741)
|+++|++|+||||+++.|...
T Consensus 3 i~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998765
No 421
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=91.46 E-value=0.14 Score=49.11 Aligned_cols=21 Identities=33% Similarity=0.725 Sum_probs=19.1
Q ss_pred EEEEecCCCChhHHHHHHHHH
Q psy17620 606 TMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a 626 (741)
++++|++|+||||+++.|...
T Consensus 3 i~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998754
No 422
>PRK09087 hypothetical protein; Validated
Probab=91.44 E-value=0.15 Score=53.03 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=21.3
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
...++|+||+|||||++.+.+++..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc
Confidence 3459999999999999999888653
No 423
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=91.44 E-value=0.12 Score=53.84 Aligned_cols=27 Identities=26% Similarity=0.527 Sum_probs=23.2
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455788999999999999999998753
No 424
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.43 E-value=0.37 Score=59.64 Aligned_cols=37 Identities=24% Similarity=0.497 Sum_probs=29.9
Q ss_pred HHHHHHHhhc--cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 593 VVQMYETMLT--RHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 593 v~qL~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
+.++.+.+.. ..+++|+||||+|||++++.|+..+..
T Consensus 196 i~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 196 IRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred HHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 5666665544 358999999999999999999998743
No 425
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=91.43 E-value=0.14 Score=49.75 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
|.-|+++|++|+|||++++.+..-
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~ 24 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKD 24 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999988763
No 426
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=91.42 E-value=0.14 Score=47.55 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=19.9
Q ss_pred eEEEEecCCCChhHHHHHHHHHh
Q psy17620 605 STMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
-|.++|++|+||||+++.+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999987653
No 427
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.42 E-value=0.39 Score=55.08 Aligned_cols=41 Identities=17% Similarity=0.360 Sum_probs=30.9
Q ss_pred chhhHHHHHHHhhccceEE-EEecCCCChhHHHHHHHHHhcc
Q psy17620 589 VSEDVVQMYETMLTRHSTM-IVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 589 ~~~Dv~qL~e~l~~r~gv~-lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
...+..++.+.+..-||++ +.|||||||||..-.+.+.++.
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 3344677888888889876 5699999999887766665543
No 428
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.39 E-value=0.13 Score=50.68 Aligned_cols=27 Identities=33% Similarity=0.624 Sum_probs=23.6
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++++..+.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 456788999999999999999998764
No 429
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=91.36 E-value=0.21 Score=55.20 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=25.2
Q ss_pred EEEEecCCCChhHHHHHHHHHhc-cCCCCeEE
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST-VLGYPART 636 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~-~~~~~~~~ 636 (741)
++++|++|+||||+.+.|+..+. ..|.++.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~ 33 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAV 33 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEE
Confidence 47899999999999999999986 45655443
No 430
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=91.36 E-value=0.3 Score=54.57 Aligned_cols=80 Identities=15% Similarity=0.248 Sum_probs=44.2
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc-cccccccc-c----CCCCCcccC-hHHHHHHHhcCCCC
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYGVL-N----PETRDWYDG-LLSNIFRAVNKPLD 677 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t-~~eLyG~~-d----~~t~eW~DG-vls~i~R~~~~~~~ 677 (741)
.++++||||+|||+..+.+.+.+..-.....+..||..... .-+.|..+ + +-...|.-. ++..++.....
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~--- 120 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSK--- 120 (366)
T ss_pred cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHh---
Confidence 49999999999999999999887643222323444433222 23333322 1 112234332 33444433322
Q ss_pred CCCCCCeEEEEc
Q psy17620 678 PGSKERKYILFD 689 (741)
Q Consensus 678 ~~~~~~~WIVfD 689 (741)
......||+|
T Consensus 121 --~~~~~IvvLD 130 (366)
T COG1474 121 --KGKTVIVILD 130 (366)
T ss_pred --cCCeEEEEEc
Confidence 2466888898
No 431
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.35 E-value=0.13 Score=49.44 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=22.9
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++++....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 455788999999999999999987653
No 432
>PRK15453 phosphoribulokinase; Provisional
Probab=91.35 E-value=0.21 Score=53.62 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=24.9
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGY 632 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~ 632 (741)
+.-|.|.|+|||||||+.+.|+..+...+.
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if~~~~~ 34 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIFRRENI 34 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 446779999999999999999988875543
No 433
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.34 E-value=0.14 Score=50.19 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=22.9
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++++....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345688999999999999999987754
No 434
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=91.33 E-value=0.25 Score=52.71 Aligned_cols=67 Identities=18% Similarity=0.315 Sum_probs=41.3
Q ss_pred EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeC--CC--ccccc----------cccccccCCCCCcccChHHHHHHH
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN--PK--AVSVI----------ELYGVLNPETRDWYDGLLSNIFRA 671 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~in--pk--a~t~~----------eLyG~~d~~t~eW~DGvls~i~R~ 671 (741)
|.+.|+|||||||+.+.+.+.+...|.++.+...+ .+ -.+++ .=|-+++|+..+|. +|...+++
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~d--lL~~~l~~ 79 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFD--LLEELFRT 79 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHH--HHHHHHHH
Confidence 57899999999999999999987665443222211 11 01111 12334557766663 67777777
Q ss_pred hcC
Q psy17620 672 VNK 674 (741)
Q Consensus 672 ~~~ 674 (741)
+.+
T Consensus 80 L~~ 82 (277)
T cd02029 80 YGE 82 (277)
T ss_pred HHc
Confidence 643
No 435
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.32 E-value=0.12 Score=53.68 Aligned_cols=27 Identities=19% Similarity=0.506 Sum_probs=23.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345688999999999999999998753
No 436
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.32 E-value=0.13 Score=52.09 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=23.2
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...-+.|+||+||||||++++++....
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 455788999999999999999988653
No 437
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=91.31 E-value=0.15 Score=51.54 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.9
Q ss_pred EEEEecCCCChhHHHHHHHHHhc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
|.|.|+|||||||+.+.|++.+.
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999863
No 438
>PRK10908 cell division protein FtsE; Provisional
Probab=91.31 E-value=0.14 Score=52.64 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=23.3
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456788999999999999999997653
No 439
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=91.30 E-value=0.13 Score=53.02 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=23.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+....
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 355788999999999999999998653
No 440
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.29 E-value=0.18 Score=58.51 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=25.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
.|++++.||+|+||||+.+.+++++..
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 479999999999999999999999864
No 441
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=91.28 E-value=0.14 Score=52.89 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=23.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345688999999999999999998754
No 442
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=91.23 E-value=0.14 Score=50.85 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=22.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++|+....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 45688999999999999999998754
No 443
>PRK05642 DNA replication initiation factor; Validated
Probab=91.21 E-value=0.26 Score=51.46 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=24.1
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYP 633 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~ 633 (741)
.+++|+||+|+|||.+.+.++......+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~ 75 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEP 75 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCc
Confidence 578999999999999999998776443433
No 444
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.20 E-value=0.14 Score=52.72 Aligned_cols=26 Identities=42% Similarity=0.709 Sum_probs=22.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.+.+.|+||+||||||++++|+..+.
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 44588999999999999999998754
No 445
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.19 E-value=0.15 Score=50.71 Aligned_cols=25 Identities=36% Similarity=0.643 Sum_probs=21.5
Q ss_pred ccceEEEEecCCCChhHHHHHHHHH
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
....|-||||+||||||++-+|+.-
T Consensus 35 ~Ge~vaiVG~SGSGKSTLl~vlAGL 59 (228)
T COG4181 35 RGETVAIVGPSGSGKSTLLAVLAGL 59 (228)
T ss_pred CCceEEEEcCCCCcHHhHHHHHhcC
Confidence 3457889999999999999999864
No 446
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.18 E-value=0.28 Score=48.46 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=23.0
Q ss_pred EEEEecCCCChhHHHHHHHHHhccCCCCeEEEE
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYT 638 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~ 638 (741)
++|.||||+|||++...++....+.|.++.+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 689999999999987665554434455554443
No 447
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=91.17 E-value=0.48 Score=46.48 Aligned_cols=75 Identities=21% Similarity=0.258 Sum_probs=48.8
Q ss_pred EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCCeE
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKY 685 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~~W 685 (741)
.+.-+..|+||||+--.|+.++...|.++.....+|..-+...+++.-. ....+...+++.. .....+
T Consensus 3 ~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~~~~------~~~~l~~~~~~~~------~~~yD~ 70 (169)
T cd02037 3 AVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWRGPM------KMGAIKQFLTDVD------WGELDY 70 (169)
T ss_pred EEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHhCcc------hHHHHHHHHHHhh------cCCCCE
Confidence 3566889999999999999999988999888888887654333221110 1112333333221 124579
Q ss_pred EEEcCCC
Q psy17620 686 ILFDGDV 692 (741)
Q Consensus 686 IVfDG~v 692 (741)
||+|.|-
T Consensus 71 VIiD~pp 77 (169)
T cd02037 71 LVIDMPP 77 (169)
T ss_pred EEEeCCC
Confidence 9999774
No 448
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=91.16 E-value=0.14 Score=52.83 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=23.6
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++++..+.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 456788999999999999999998754
No 449
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=91.16 E-value=0.14 Score=53.06 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=23.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 355788999999999999999997653
No 450
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=91.16 E-value=0.18 Score=48.38 Aligned_cols=21 Identities=38% Similarity=0.703 Sum_probs=19.2
Q ss_pred EEEEecCCCChhHHHHHHHHH
Q psy17620 606 TMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a 626 (741)
|+++|++|+|||++++.+...
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLING 22 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999998864
No 451
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.15 E-value=0.13 Score=52.59 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.6
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+.|+||+||||||++++|+..+.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 6789999999999999999998754
No 452
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.15 E-value=0.15 Score=50.91 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.3
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345688999999999999999998764
No 453
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.15 E-value=0.14 Score=52.22 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=22.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++|+..+.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 45688999999999999999998754
No 454
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=91.14 E-value=0.13 Score=54.27 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=22.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++|+..+.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44688999999999999999998754
No 455
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=91.12 E-value=0.13 Score=53.17 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.6
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 355788999999999999999998765
No 456
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=91.10 E-value=0.17 Score=52.36 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.5
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.|.|.||+||||||+.+.|++.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998764
No 457
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=91.10 E-value=0.27 Score=50.72 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.8
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+.+.|+|.||||||+..+.|...+.
T Consensus 24 ~H~~I~G~TGsGKS~~~~~ll~~l~ 48 (229)
T PF01935_consen 24 RHIAIFGTTGSGKSNTVKVLLEELL 48 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556889999999999999998876
No 458
>KOG3347|consensus
Probab=91.09 E-value=0.18 Score=49.07 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=35.9
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccC
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNP 655 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~ 655 (741)
..+..++|.|-||+||||+-+.|++... .....| -+-+.-++||+.||.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~-----~~~i~i-sd~vkEn~l~~gyDE 53 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTG-----LEYIEI-SDLVKENNLYEGYDE 53 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhC-----CceEeh-hhHHhhhcchhcccc
Confidence 3567899999999999999999998753 122222 234455789999885
No 459
>KOG0731|consensus
Probab=91.07 E-value=0.13 Score=61.76 Aligned_cols=31 Identities=26% Similarity=0.595 Sum_probs=24.6
Q ss_pred HHHHhhc--cceEEEEecCCCChhHHHHHHHHH
Q psy17620 596 MYETMLT--RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 596 L~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
-|+-+-+ -+||+|+||||||||.+.|+.|.-
T Consensus 335 ~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE 367 (774)
T KOG0731|consen 335 QYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE 367 (774)
T ss_pred HHHHcCCcCcCceEEECCCCCcHHHHHHHHhcc
Confidence 3454533 569999999999999999988764
No 460
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=91.07 E-value=0.15 Score=49.19 Aligned_cols=21 Identities=33% Similarity=0.659 Sum_probs=19.0
Q ss_pred EEEEecCCCChhHHHHHHHHH
Q psy17620 606 TMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a 626 (741)
|+++|++|+||||+++.+...
T Consensus 3 i~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999998754
No 461
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=91.05 E-value=0.21 Score=56.44 Aligned_cols=26 Identities=31% Similarity=0.608 Sum_probs=23.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.+.++++||||+|||++.+.|++.+.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~ 75 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999863
No 462
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=91.05 E-value=0.14 Score=50.31 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=23.3
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...-+.|+||+||||||++++++..+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 455788999999999999999998754
No 463
>PLN02674 adenylate kinase
Probab=91.04 E-value=0.17 Score=53.36 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=22.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..|+|.|||||||||.-+.|++.++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcC
Confidence 5699999999999999999998764
No 464
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=91.04 E-value=0.14 Score=50.94 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=22.9
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...-+.|+||+||||||++++++....
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345678999999999999999988654
No 465
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=91.02 E-value=0.13 Score=53.90 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=23.5
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+....
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456789999999999999999998754
No 466
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=90.99 E-value=0.18 Score=53.29 Aligned_cols=24 Identities=33% Similarity=0.663 Sum_probs=20.9
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-+-|+||.|+||||++|++...+.
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGll~ 55 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGLLK 55 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 467999999999999999988654
No 467
>PHA02774 E1; Provisional
Probab=90.99 E-value=0.57 Score=54.85 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=23.3
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+.+++++||||+|||.+.-.|++.+.
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999999988863
No 468
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.98 E-value=0.14 Score=52.49 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=23.5
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++++..+.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 456788999999999999999998754
No 469
>PRK13973 thymidylate kinase; Provisional
Probab=90.95 E-value=0.26 Score=50.60 Aligned_cols=38 Identities=29% Similarity=0.370 Sum_probs=29.6
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 643 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka 643 (741)
=|.+.|+.||||||..+.|++.+...|.++ +..=.|..
T Consensus 5 ~IviEG~dGsGKtTq~~~l~~~l~~~g~~~-~~~~~p~~ 42 (213)
T PRK13973 5 FITFEGGEGAGKSTQIRLLAERLRAAGYDV-LVTREPGG 42 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeE-EEEECCCC
Confidence 467899999999999999999998766554 33345654
No 470
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=90.94 E-value=0.15 Score=53.37 Aligned_cols=26 Identities=31% Similarity=0.629 Sum_probs=22.4
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
....+.|+||+||||||++++++...
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 28 ENQVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 35568899999999999999999854
No 471
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=90.93 E-value=0.16 Score=48.58 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHHH
Q psy17620 605 STMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a 626 (741)
-++++|++|+|||++++.|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 472
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.93 E-value=0.14 Score=53.28 Aligned_cols=27 Identities=19% Similarity=0.490 Sum_probs=22.9
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345678999999999999999998654
No 473
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.92 E-value=0.15 Score=52.00 Aligned_cols=26 Identities=19% Similarity=0.498 Sum_probs=22.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..-+.|+||+||||||++++++....
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45678999999999999999998754
No 474
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=90.91 E-value=0.16 Score=53.42 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=22.6
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++|+..+.
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 44688999999999999999998754
No 475
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.90 E-value=0.14 Score=51.86 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..-+.|+||+||||||++++++..+.
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44578999999999999999998754
No 476
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=90.89 E-value=0.2 Score=49.58 Aligned_cols=26 Identities=31% Similarity=0.509 Sum_probs=22.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..-.+|+||.|+||||++.++.-++.
T Consensus 19 ~g~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 35678999999999999999988875
No 477
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=90.89 E-value=0.15 Score=53.65 Aligned_cols=27 Identities=37% Similarity=0.649 Sum_probs=23.1
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+....
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl~~ 55 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRMHE 55 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 345688999999999999999998753
No 478
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.89 E-value=0.17 Score=53.39 Aligned_cols=26 Identities=38% Similarity=0.561 Sum_probs=22.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++|+..+.
T Consensus 38 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 38 NEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 45688999999999999999998753
No 479
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.88 E-value=0.15 Score=53.37 Aligned_cols=27 Identities=26% Similarity=0.537 Sum_probs=23.1
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++++..+.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 345688999999999999999998753
No 480
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.88 E-value=0.14 Score=53.33 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=23.1
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345688999999999999999998754
No 481
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=90.86 E-value=0.17 Score=49.06 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHHH
Q psy17620 605 STMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a 626 (741)
-|+++|++|+|||++++.+...
T Consensus 5 ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 5 KLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999998754
No 482
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=90.86 E-value=0.15 Score=53.33 Aligned_cols=27 Identities=22% Similarity=0.516 Sum_probs=22.9
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345688999999999999999998753
No 483
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=90.86 E-value=0.14 Score=52.68 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=23.4
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 355788999999999999999998764
No 484
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=90.85 E-value=0.17 Score=48.75 Aligned_cols=23 Identities=17% Similarity=0.505 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+++|++|+||||+++.+...
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~ 30 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQG 30 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999998753
No 485
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.85 E-value=0.15 Score=51.93 Aligned_cols=27 Identities=41% Similarity=0.630 Sum_probs=22.9
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...-+.|+||+||||||++++|+..+.
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345688999999999999999998754
No 486
>KOG0482|consensus
Probab=90.82 E-value=1.4 Score=50.56 Aligned_cols=135 Identities=24% Similarity=0.370 Sum_probs=85.0
Q ss_pred cCcceeecccccCChhhHHH----HHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccCCCCC---------CCC
Q psy17620 421 CGAWGCFDEFNRIDVSVLSV----ISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAG---------RTE 487 (741)
Q Consensus 421 ~GaW~cfDEfnrl~~~vLSv----va~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNpgy~g---------r~e 487 (741)
-|.-+|+|||+.+...---+ +-||--+|.. -|-.-.||-.|+|.+..||-|.. .-.
T Consensus 439 D~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaK-----------AGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~ 507 (721)
T KOG0482|consen 439 DGGICCIDEFDKMDESDRTAIHEVMEQQTISIAK-----------AGINTTLNARTSILAAANPAYGRYNPRRSPEQNIN 507 (721)
T ss_pred cCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhh-----------hccccchhhhHHhhhhcCccccccCcccChhHhcC
Confidence 35679999999998764333 3344333321 14444788999999999997642 136
Q ss_pred chHHHhhcceeeecc--CCCHH---HHHHHHHhhc--------Cc--------------------cchHHHHHHHHHHHH
Q psy17620 488 LPESVKALFRPVVCI--VPDFE---LICQIMLFSE--------GF--------------------LEAKVLAKKMAVLYK 534 (741)
Q Consensus 488 LP~nLk~lFRpvam~--~PD~~---~I~ei~L~s~--------GF--------------------~~a~~La~Kl~~l~~ 534 (741)
||..|-+.|--+.++ .||.. .+|+-+.+-+ +| .-+..|+..++..|-
T Consensus 508 LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv 587 (721)
T KOG0482|consen 508 LPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYITGAYV 587 (721)
T ss_pred CcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Confidence 999999999888776 45442 2232222211 11 124567788888776
Q ss_pred HHHH-HhhcCCccccchhhHHHHHHHhhHhHhh
Q psy17620 535 LSKE-QLSKQCHYDFGMRALKSVLVMAGELKRA 566 (741)
Q Consensus 535 l~~e-~ls~q~hydfgLRalksVL~~a~~l~~~ 566 (741)
..+. .-++.+|---.-|.+.++|+.+.++.|-
T Consensus 588 ~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarL 620 (721)
T KOG0482|consen 588 ELRREARSSKDFTYTTPRTLLGILRLSTALARL 620 (721)
T ss_pred HHHHHhhccCCCcccCHHHHHHHHHHHHHHHHh
Confidence 5553 3334344334679999999988776653
No 487
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=90.80 E-value=0.17 Score=51.12 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=23.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++++....
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345688999999999999999998753
No 488
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=90.79 E-value=0.16 Score=48.47 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.8
Q ss_pred EEEEecCCCChhHHHHHHHHH
Q psy17620 606 TMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a 626 (741)
|+++|++|+|||++++.+...
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 689999999999999998754
No 489
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=90.78 E-value=0.18 Score=51.82 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=23.4
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++++..+.
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455788999999999999999998764
No 490
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=90.78 E-value=0.16 Score=53.70 Aligned_cols=26 Identities=27% Similarity=0.569 Sum_probs=22.8
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
....+.|+||+||||||++++|+..+
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45568899999999999999999875
No 491
>PLN02165 adenylate isopentenyltransferase
Probab=90.78 E-value=0.17 Score=55.51 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=22.0
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.++|+||||||||++...|++.++
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcC
Confidence 588999999999999999999865
No 492
>PRK00098 GTPase RsgA; Reviewed
Probab=90.77 E-value=0.22 Score=53.96 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=28.3
Q ss_pred HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
+..|.+.+. ...++++|+||+||||+++.|....
T Consensus 155 i~~L~~~l~-gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 155 LDELKPLLA-GKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred HHHHHhhcc-CceEEEECCCCCCHHHHHHHHhCCc
Confidence 666777665 6688999999999999999998654
No 493
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=90.76 E-value=0.17 Score=48.35 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.3
Q ss_pred eEEEEecCCCChhHHHHHHHHH
Q psy17620 605 STMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a 626 (741)
-|+++|++|+||||+++.+...
T Consensus 2 ki~liG~~~~GKSsli~~l~~~ 23 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYD 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998654
No 494
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=90.76 E-value=0.59 Score=57.06 Aligned_cols=79 Identities=18% Similarity=0.269 Sum_probs=45.3
Q ss_pred EEEEecCCCChhHHHHHHHHHhccC----CCC-eEEEEeCCCccc-c--------ccccccccCCCCCcccChHHHHHHH
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVL----GYP-ARTYTLNPKAVS-V--------IELYGVLNPETRDWYDGLLSNIFRA 671 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~----~~~-~~~~~inpka~t-~--------~eLyG~~d~~t~eW~DGvls~i~R~ 671 (741)
++|.|+||+|||++++.+.+.+... +.+ +.+..||.-.+. . .+|.|.. |.++--...++..+++.
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~-P~~GlsS~evLerLF~~ 862 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKK-PPNALNSFKILDRLFNQ 862 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCC-CCccccHHHHHHHHHhh
Confidence 5699999999999999988776421 223 566677753322 1 2333432 32221233355666654
Q ss_pred hcCCCCCCCCCCeEEEEc
Q psy17620 672 VNKPLDPGSKERKYILFD 689 (741)
Q Consensus 672 ~~~~~~~~~~~~~WIVfD 689 (741)
.... ......||+|
T Consensus 863 L~k~----~r~v~IIILD 876 (1164)
T PTZ00112 863 NKKD----NRNVSILIID 876 (1164)
T ss_pred hhcc----cccceEEEee
Confidence 4221 2234689999
No 495
>KOG2749|consensus
Probab=90.75 E-value=0.3 Score=53.51 Aligned_cols=39 Identities=28% Similarity=0.341 Sum_probs=29.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP 641 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp 641 (741)
...||+|||+.+||||+.++|..---+.|.++.+..++|
T Consensus 103 GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDv 141 (415)
T KOG2749|consen 103 GPRVMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDV 141 (415)
T ss_pred CCEEEEECCCccchHHHHHHHHHHHHHcCCcceEEEcCC
Confidence 568999999999999999999987655565444443333
No 496
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=90.74 E-value=0.17 Score=48.87 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=19.8
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+++|++|+||||+++.+...
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~ 26 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSG 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45889999999999999998653
No 497
>PRK12288 GTPase RsgA; Reviewed
Probab=90.74 E-value=0.23 Score=55.10 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=27.5
Q ss_pred HHHHHHHhhccceEEEEecCCCChhHHHHHHHHH
Q psy17620 593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
+..|.+.+. ...++++|+||+||||+++.|...
T Consensus 196 ideL~~~L~-~ki~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 196 LEELEAALT-GRISIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred HHHHHHHHh-hCCEEEECCCCCCHHHHHHHhccc
Confidence 667777775 456899999999999999999865
No 498
>PRK10867 signal recognition particle protein; Provisional
Probab=90.73 E-value=0.28 Score=55.98 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=31.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccC-CCCeEEEEeCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVL-GYPARTYTLNPK 642 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~-~~~~~~~~inpk 642 (741)
...|+++|++||||||..--|+..+... |.++-+...++.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 3578999999999999999999887766 666665555543
No 499
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=90.73 E-value=0.26 Score=54.23 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=25.3
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...|..+++||+|+||+++.+.+++++.
T Consensus 26 ~l~ha~Lf~G~~G~gk~~~a~~la~~l~ 53 (329)
T PRK08058 26 RLSHAYLFEGAKGTGKKATALWLAKSLF 53 (329)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHC
Confidence 4578999999999999999999999974
No 500
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=90.72 E-value=0.16 Score=52.51 Aligned_cols=27 Identities=33% Similarity=0.570 Sum_probs=23.2
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+....
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 355788999999999999999988754
Done!