Query psy17620
Match_columns 741
No_of_seqs 418 out of 1758
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 18:44:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17620.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17620hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 4E-144 1E-148 1399.1 41.3 550 155-740 222-1044(3245)
2 4akg_A Glutathione S-transfera 100.0 1E-128 4E-133 1253.0 43.3 548 155-740 281-1062(2695)
3 3vkg_A Dynein heavy chain, cyt 99.9 1.3E-25 4.5E-30 293.3 5.0 162 1-182 389-578 (3245)
4 4akg_A Glutathione S-transfera 99.8 2E-22 6.8E-27 262.7 2.2 155 1-182 446-619 (2695)
5 1r6b_X CLPA protein; AAA+, N-t 98.5 6.8E-07 2.3E-11 106.4 16.0 111 605-731 490-606 (758)
6 1qvr_A CLPB protein; coiled co 98.1 1.6E-05 5.5E-10 96.0 12.7 113 604-730 589-708 (854)
7 3pxi_A Negative regulator of g 98.0 5.9E-06 2E-10 98.4 8.7 104 605-731 523-628 (758)
8 1g8p_A Magnesium-chelatase 38 97.4 8.1E-05 2.8E-09 79.3 5.0 116 602-731 44-195 (350)
9 2r44_A Uncharacterized protein 97.4 0.0011 3.9E-08 70.3 13.8 86 422-516 110-197 (331)
10 4fcw_A Chaperone protein CLPB; 97.4 0.00049 1.7E-08 72.0 10.0 115 604-732 48-169 (311)
11 3nbx_X ATPase RAVA; AAA+ ATPas 97.3 0.0004 1.4E-08 78.8 8.9 134 586-733 22-159 (500)
12 3t15_A Ribulose bisphosphate c 97.1 0.00017 5.8E-09 76.0 3.0 120 603-739 36-171 (293)
13 2r44_A Uncharacterized protein 97.1 0.00093 3.2E-08 70.9 8.8 133 577-731 18-158 (331)
14 3pfi_A Holliday junction ATP-d 97.1 0.00038 1.3E-08 74.0 5.8 106 604-738 56-169 (338)
15 2bjv_A PSP operon transcriptio 97.1 0.00061 2.1E-08 70.0 7.1 117 598-731 24-149 (265)
16 2chg_A Replication factor C sm 97.1 0.00084 2.9E-08 65.4 7.8 98 594-706 27-128 (226)
17 1ojl_A Transcriptional regulat 97.1 0.0011 3.7E-08 70.3 8.9 115 600-731 22-145 (304)
18 3k1j_A LON protease, ATP-depen 96.9 0.0014 4.9E-08 75.9 8.1 36 593-628 50-85 (604)
19 1hqc_A RUVB; extended AAA-ATPa 96.9 0.0033 1.1E-07 66.1 10.0 110 603-739 38-154 (324)
20 3syl_A Protein CBBX; photosynt 96.9 0.0016 5.6E-08 68.0 7.6 87 603-707 67-166 (309)
21 3jvv_A Twitching mobility prot 96.8 0.0032 1.1E-07 68.3 9.7 97 600-703 119-217 (356)
22 3n70_A Transport activator; si 96.7 0.0027 9.1E-08 59.3 7.4 37 597-633 18-54 (145)
23 1um8_A ATP-dependent CLP prote 96.7 0.00079 2.7E-08 73.0 3.6 92 602-707 71-178 (376)
24 3f9v_A Minichromosome maintena 96.6 0.0016 5.5E-08 75.4 6.0 110 605-733 329-444 (595)
25 3co5_A Putative two-component 96.6 0.0012 4.2E-08 61.6 4.0 76 600-706 24-101 (143)
26 3h4m_A Proteasome-activating n 96.5 0.0025 8.5E-08 65.8 6.2 28 601-628 49-76 (285)
27 2plr_A DTMP kinase, probable t 96.5 0.0042 1.4E-07 60.7 7.4 28 604-631 5-32 (213)
28 1njg_A DNA polymerase III subu 96.5 0.0071 2.4E-07 59.3 9.0 34 595-628 34-70 (250)
29 3ec2_A DNA replication protein 96.5 0.0014 4.9E-08 63.1 3.7 26 603-628 38-63 (180)
30 3f8t_A Predicted ATPase involv 96.4 0.02 6.9E-07 64.1 12.9 133 422-565 301-464 (506)
31 3cf2_A TER ATPase, transitiona 96.4 0.071 2.4E-06 63.6 18.0 71 603-694 511-581 (806)
32 3b9p_A CG5977-PA, isoform A; A 96.4 0.0054 1.8E-07 63.8 7.4 26 603-628 54-79 (297)
33 1jbk_A CLPB protein; beta barr 96.3 0.0048 1.7E-07 58.4 6.5 37 593-629 31-69 (195)
34 3pxg_A Negative regulator of g 96.3 0.0079 2.7E-07 67.5 9.2 98 593-710 189-293 (468)
35 2chq_A Replication factor C sm 96.3 0.0036 1.2E-07 65.2 5.8 24 605-628 40-63 (319)
36 3hws_A ATP-dependent CLP prote 96.3 0.00043 1.5E-08 74.8 -1.4 97 602-713 50-162 (363)
37 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0025 8.6E-08 65.6 4.4 30 604-633 5-34 (260)
38 2r62_A Cell division protease 96.1 0.017 5.7E-07 59.1 9.6 26 603-628 44-69 (268)
39 3pxi_A Negative regulator of g 96.1 0.01 3.5E-07 70.5 9.0 98 593-710 189-293 (758)
40 3m6a_A ATP-dependent protease 96.1 0.017 5.9E-07 66.0 10.5 124 603-739 108-240 (543)
41 2p65_A Hypothetical protein PF 95.9 0.0073 2.5E-07 57.2 5.5 37 593-629 31-69 (187)
42 2eyu_A Twitching motility prot 95.9 0.014 4.7E-07 60.5 7.8 29 601-629 23-51 (261)
43 4eaq_A DTMP kinase, thymidylat 95.9 0.0029 9.8E-08 64.2 2.6 99 603-703 26-142 (229)
44 2qby_B CDC6 homolog 3, cell di 95.9 0.0063 2.2E-07 65.3 5.2 26 603-628 45-70 (384)
45 1fnn_A CDC6P, cell division co 95.8 0.02 6.8E-07 61.3 9.0 95 605-705 46-150 (389)
46 3hu3_A Transitional endoplasmi 95.8 0.0035 1.2E-07 70.9 3.1 68 602-689 237-304 (489)
47 3cf2_A TER ATPase, transitiona 95.8 0.013 4.6E-07 69.8 8.1 26 603-628 238-263 (806)
48 1kag_A SKI, shikimate kinase I 95.8 0.0046 1.6E-07 58.7 3.4 26 603-628 4-29 (173)
49 1iqp_A RFCS; clamp loader, ext 95.8 0.0058 2E-07 63.9 4.4 34 595-628 36-71 (327)
50 1nks_A Adenylate kinase; therm 95.8 0.0072 2.5E-07 58.0 4.8 31 605-635 3-33 (194)
51 4b4t_L 26S protease subunit RP 95.8 0.01 3.4E-07 66.1 6.3 33 596-628 206-240 (437)
52 3lv8_A DTMP kinase, thymidylat 95.8 0.011 3.8E-07 60.4 6.2 101 603-703 27-148 (236)
53 1lv7_A FTSH; alpha/beta domain 95.7 0.013 4.4E-07 59.7 6.5 38 602-644 44-81 (257)
54 1lvg_A Guanylate kinase, GMP k 95.7 0.0052 1.8E-07 60.6 3.3 27 602-628 3-29 (198)
55 3bos_A Putative DNA replicatio 95.7 0.013 4.5E-07 58.0 6.3 33 602-634 51-83 (242)
56 3dzd_A Transcriptional regulat 95.7 0.026 8.9E-07 61.3 9.1 116 598-731 147-271 (368)
57 2w58_A DNAI, primosome compone 95.7 0.015 5.1E-07 56.8 6.5 31 604-634 55-85 (202)
58 1sxj_B Activator 1 37 kDa subu 95.6 0.011 3.8E-07 61.5 5.7 23 606-628 45-67 (323)
59 2c95_A Adenylate kinase 1; tra 95.6 0.0088 3E-07 57.8 4.5 31 598-628 4-34 (196)
60 4b4t_J 26S protease regulatory 95.6 0.01 3.4E-07 65.4 5.4 34 595-628 172-207 (405)
61 2ewv_A Twitching motility prot 95.6 0.021 7.2E-07 62.1 8.0 90 602-698 135-225 (372)
62 1kgd_A CASK, peripheral plasma 95.6 0.0062 2.1E-07 58.9 3.3 26 603-628 5-30 (180)
63 3kb2_A SPBC2 prophage-derived 95.6 0.0062 2.1E-07 57.4 3.2 24 605-628 3-26 (173)
64 4b4t_K 26S protease regulatory 95.5 0.0079 2.7E-07 66.8 4.5 27 602-628 205-231 (428)
65 2v1u_A Cell division control p 95.5 0.015 5.2E-07 62.0 6.5 42 602-643 43-88 (387)
66 1ixz_A ATP-dependent metallopr 95.5 0.013 4.5E-07 59.5 5.7 27 602-628 48-74 (254)
67 1qhx_A CPT, protein (chloramph 95.5 0.0064 2.2E-07 58.0 3.0 25 604-628 4-28 (178)
68 1ofh_A ATP-dependent HSL prote 95.5 0.014 4.7E-07 60.5 5.8 39 602-645 49-87 (310)
69 1kht_A Adenylate kinase; phosp 95.4 0.011 3.7E-07 56.8 4.5 29 604-632 4-32 (192)
70 4b4t_M 26S protease regulatory 95.4 0.0089 3E-07 66.5 4.4 27 602-628 214-240 (434)
71 2x8a_A Nuclear valosin-contain 95.4 0.0065 2.2E-07 63.3 3.1 27 602-628 43-69 (274)
72 3cf0_A Transitional endoplasmi 95.4 0.014 4.9E-07 61.2 5.7 27 602-628 48-74 (301)
73 3c8u_A Fructokinase; YP_612366 95.4 0.012 3.9E-07 58.3 4.6 40 603-642 22-61 (208)
74 2qz4_A Paraplegin; AAA+, SPG7, 95.3 0.013 4.3E-07 59.4 4.9 27 602-628 38-64 (262)
75 3vfd_A Spastin; ATPase, microt 95.3 0.025 8.7E-07 61.5 7.6 67 603-689 148-214 (389)
76 3tr0_A Guanylate kinase, GMP k 95.3 0.008 2.7E-07 58.6 3.2 26 602-627 6-31 (205)
77 3a00_A Guanylate kinase, GMP k 95.3 0.011 3.6E-07 57.5 3.9 25 604-628 2-26 (186)
78 1ny5_A Transcriptional regulat 95.3 0.037 1.3E-06 60.4 8.6 117 598-731 155-280 (387)
79 1zp6_A Hypothetical protein AT 95.2 0.0074 2.5E-07 58.2 2.7 24 603-626 9-32 (191)
80 2zan_A Vacuolar protein sortin 95.2 0.041 1.4E-06 61.2 9.0 68 603-689 167-234 (444)
81 4b4t_I 26S protease regulatory 95.2 0.017 5.7E-07 64.1 5.7 33 596-628 207-241 (437)
82 3f9v_A Minichromosome maintena 95.2 0.024 8.3E-07 65.5 7.4 87 421-515 391-491 (595)
83 3vaa_A Shikimate kinase, SK; s 95.2 0.01 3.6E-07 58.1 3.7 27 602-628 24-50 (199)
84 2z0h_A DTMP kinase, thymidylat 95.2 0.014 4.9E-07 56.3 4.6 30 606-635 3-32 (197)
85 1np6_A Molybdopterin-guanine d 95.2 0.021 7.1E-07 55.6 5.6 41 603-643 6-46 (174)
86 1jr3_A DNA polymerase III subu 95.2 0.043 1.5E-06 58.4 8.7 27 603-629 38-64 (373)
87 1ye8_A Protein THEP1, hypothet 95.2 0.0099 3.4E-07 57.9 3.3 24 605-628 2-25 (178)
88 3d8b_A Fidgetin-like protein 1 95.1 0.023 8E-07 61.1 6.5 26 602-627 116-141 (357)
89 3trf_A Shikimate kinase, SK; a 95.1 0.011 3.9E-07 56.7 3.6 26 603-628 5-30 (185)
90 2rhm_A Putative kinase; P-loop 95.1 0.01 3.6E-07 57.1 3.3 26 603-628 5-30 (193)
91 1ypw_A Transitional endoplasmi 95.1 0.097 3.3E-06 62.7 12.3 87 409-513 284-381 (806)
92 3e1s_A Exodeoxyribonuclease V, 95.1 0.036 1.2E-06 63.8 8.3 93 602-710 203-309 (574)
93 3uie_A Adenylyl-sulfate kinase 95.1 0.011 3.6E-07 58.1 3.3 27 603-629 25-51 (200)
94 3lw7_A Adenylate kinase relate 95.1 0.01 3.6E-07 55.6 3.1 23 604-627 2-24 (179)
95 1xjc_A MOBB protein homolog; s 95.1 0.021 7E-07 55.4 5.2 40 604-643 5-44 (169)
96 2qor_A Guanylate kinase; phosp 95.1 0.0093 3.2E-07 58.7 2.8 27 602-628 11-37 (204)
97 1ly1_A Polynucleotide kinase; 95.0 0.01 3.5E-07 56.3 3.0 22 604-625 3-24 (181)
98 3cm0_A Adenylate kinase; ATP-b 95.0 0.012 4.2E-07 56.4 3.5 26 603-628 4-29 (186)
99 1sxj_E Activator 1 40 kDa subu 95.0 0.042 1.4E-06 58.3 7.9 24 603-627 37-60 (354)
100 2bbw_A Adenylate kinase 4, AK4 95.0 0.012 4.2E-07 59.6 3.6 33 596-628 19-52 (246)
101 3pvs_A Replication-associated 95.0 0.028 9.4E-07 62.8 6.7 25 604-628 51-75 (447)
102 1cke_A CK, MSSA, protein (cyti 95.0 0.012 4.1E-07 58.4 3.4 25 603-627 5-29 (227)
103 1nn5_A Similar to deoxythymidy 95.0 0.02 6.8E-07 56.1 4.9 31 604-634 10-40 (215)
104 3te6_A Regulatory protein SIR3 95.0 0.02 7E-07 61.0 5.3 43 603-645 45-92 (318)
105 4eun_A Thermoresistant glucoki 95.0 0.012 4.1E-07 57.7 3.3 24 604-627 30-53 (200)
106 1ex7_A Guanylate kinase; subst 95.0 0.011 3.8E-07 58.2 3.0 24 604-627 2-25 (186)
107 3t61_A Gluconokinase; PSI-biol 95.0 0.012 4.3E-07 57.5 3.4 24 605-628 20-43 (202)
108 3upu_A ATP-dependent DNA helic 94.9 0.023 8E-07 63.3 5.8 30 603-632 45-74 (459)
109 1s96_A Guanylate kinase, GMP k 94.9 0.013 4.5E-07 59.0 3.4 29 600-628 13-41 (219)
110 3tau_A Guanylate kinase, GMP k 94.9 0.012 4.2E-07 58.2 3.0 26 603-628 8-33 (208)
111 2j41_A Guanylate kinase; GMP, 94.9 0.012 4.3E-07 57.2 3.1 25 603-627 6-30 (207)
112 1knq_A Gluconate kinase; ALFA/ 94.8 0.014 4.8E-07 55.6 3.3 24 604-627 9-32 (175)
113 3iij_A Coilin-interacting nucl 94.8 0.013 4.6E-07 56.1 3.2 26 603-628 11-36 (180)
114 1via_A Shikimate kinase; struc 94.8 0.014 4.9E-07 55.7 3.3 24 605-628 6-29 (175)
115 2pbr_A DTMP kinase, thymidylat 94.8 0.022 7.6E-07 54.7 4.7 32 605-636 2-33 (195)
116 1xwi_A SKD1 protein; VPS4B, AA 94.8 0.024 8.3E-07 60.2 5.4 25 603-627 45-69 (322)
117 1iy2_A ATP-dependent metallopr 94.8 0.012 4.2E-07 60.8 3.1 27 602-628 72-98 (278)
118 3eie_A Vacuolar protein sortin 94.8 0.024 8.1E-07 60.1 5.3 26 603-628 51-76 (322)
119 1znw_A Guanylate kinase, GMP k 94.8 0.014 4.8E-07 57.6 3.4 28 601-628 18-45 (207)
120 2yvu_A Probable adenylyl-sulfa 94.8 0.021 7.1E-07 55.1 4.4 31 604-634 14-44 (186)
121 2kjq_A DNAA-related protein; s 94.8 0.023 8E-07 53.5 4.7 30 602-631 35-64 (149)
122 4b4t_H 26S protease regulatory 94.8 0.016 5.6E-07 64.7 4.1 27 602-628 242-268 (467)
123 2wwf_A Thymidilate kinase, put 94.8 0.023 8E-07 55.5 4.8 33 603-635 10-42 (212)
124 2bdt_A BH3686; alpha-beta prot 94.8 0.014 4.6E-07 56.5 3.0 23 605-627 4-26 (189)
125 2pt7_A CAG-ALFA; ATPase, prote 94.7 0.04 1.4E-06 59.0 6.8 29 600-628 168-196 (330)
126 2qp9_X Vacuolar protein sortin 94.7 0.023 7.9E-07 61.2 5.0 26 603-628 84-109 (355)
127 3u61_B DNA polymerase accessor 94.7 0.028 9.4E-07 59.2 5.5 34 603-641 48-81 (324)
128 2jaq_A Deoxyguanosine kinase; 94.7 0.016 5.4E-07 56.2 3.3 24 605-628 2-25 (205)
129 1a5t_A Delta prime, HOLB; zinc 94.7 0.061 2.1E-06 57.3 8.2 28 602-629 23-50 (334)
130 3sop_A Neuronal-specific septi 94.7 0.016 5.5E-07 60.2 3.5 25 604-628 3-27 (270)
131 3asz_A Uridine kinase; cytidin 94.7 0.017 5.8E-07 56.8 3.5 24 605-628 8-31 (211)
132 1z6g_A Guanylate kinase; struc 94.7 0.015 5.2E-07 58.2 3.1 26 602-627 22-47 (218)
133 2bwj_A Adenylate kinase 5; pho 94.7 0.021 7E-07 55.3 4.0 29 600-628 9-37 (199)
134 1e6c_A Shikimate kinase; phosp 94.5 0.018 6.3E-07 54.4 3.2 24 605-628 4-27 (173)
135 3fb4_A Adenylate kinase; psych 94.5 0.018 6.2E-07 56.8 3.3 23 606-628 3-25 (216)
136 1tev_A UMP-CMP kinase; ploop, 94.5 0.019 6.4E-07 55.2 3.3 25 604-628 4-28 (196)
137 1zak_A Adenylate kinase; ATP:A 94.4 0.02 6.8E-07 57.0 3.4 25 604-628 6-30 (222)
138 1in4_A RUVB, holliday junction 94.4 0.026 8.7E-07 60.2 4.4 25 604-628 52-76 (334)
139 1qf9_A UMP/CMP kinase, protein 94.4 0.021 7.2E-07 54.7 3.4 24 605-628 8-31 (194)
140 2iyv_A Shikimate kinase, SK; t 94.4 0.021 7.1E-07 54.8 3.3 24 605-628 4-27 (184)
141 3ney_A 55 kDa erythrocyte memb 94.4 0.021 7E-07 56.8 3.3 26 603-628 19-44 (197)
142 1r6b_X CLPA protein; AAA+, N-t 94.4 0.16 5.6E-06 60.0 11.7 37 593-629 195-233 (758)
143 3dl0_A Adenylate kinase; phosp 94.3 0.02 6.8E-07 56.6 3.0 23 606-628 3-25 (216)
144 2f1r_A Molybdopterin-guanine d 94.3 0.02 6.9E-07 55.5 3.0 39 604-642 3-41 (171)
145 1zuh_A Shikimate kinase; alpha 94.3 0.024 8.2E-07 53.6 3.5 25 604-628 8-32 (168)
146 1gtv_A TMK, thymidylate kinase 94.3 0.011 3.7E-07 58.1 1.1 27 605-631 2-28 (214)
147 2vli_A Antibiotic resistance p 94.3 0.018 6.1E-07 55.0 2.5 25 604-628 6-30 (183)
148 1qvr_A CLPB protein; coiled co 94.3 0.1 3.5E-06 62.8 9.6 52 593-644 179-237 (854)
149 2pt5_A Shikimate kinase, SK; a 94.2 0.023 8E-07 53.4 3.3 24 605-628 2-25 (168)
150 2cdn_A Adenylate kinase; phosp 94.2 0.023 7.8E-07 55.5 3.3 24 605-628 22-45 (201)
151 1zd8_A GTP:AMP phosphotransfer 94.2 0.022 7.4E-07 56.9 3.2 25 604-628 8-32 (227)
152 2pez_A Bifunctional 3'-phospho 94.2 0.037 1.3E-06 52.9 4.7 30 604-633 6-35 (179)
153 1d2n_A N-ethylmaleimide-sensit 94.2 0.024 8.2E-07 58.2 3.5 85 602-705 63-159 (272)
154 1rz3_A Hypothetical protein rb 94.2 0.037 1.3E-06 54.4 4.6 34 604-637 23-56 (201)
155 1aky_A Adenylate kinase; ATP:A 94.1 0.024 8.2E-07 56.3 3.3 25 604-628 5-29 (220)
156 4gp7_A Metallophosphoesterase; 94.1 0.021 7.1E-07 54.8 2.7 19 604-622 10-28 (171)
157 1sxj_D Activator 1 41 kDa subu 94.1 0.034 1.2E-06 58.7 4.5 51 593-643 46-99 (353)
158 1rj9_A FTSY, signal recognitio 94.1 0.036 1.2E-06 58.7 4.7 34 604-637 103-136 (304)
159 1l8q_A Chromosomal replication 94.1 0.033 1.1E-06 58.7 4.3 29 603-631 37-65 (324)
160 2ze6_A Isopentenyl transferase 94.0 0.025 8.6E-07 58.0 3.3 24 605-628 3-26 (253)
161 3uk6_A RUVB-like 2; hexameric 94.0 0.027 9.2E-07 60.1 3.6 25 604-628 71-95 (368)
162 2qgz_A Helicase loader, putati 94.0 0.063 2.2E-06 56.7 6.4 34 603-636 152-186 (308)
163 2v54_A DTMP kinase, thymidylat 94.0 0.022 7.4E-07 55.4 2.6 25 603-627 4-28 (204)
164 4e22_A Cytidylate kinase; P-lo 94.0 0.025 8.5E-07 57.9 3.2 26 603-628 27-52 (252)
165 1gvn_B Zeta; postsegregational 94.0 0.025 8.7E-07 59.2 3.2 24 604-627 34-57 (287)
166 1y63_A LMAJ004144AAA protein; 94.0 0.027 9.3E-07 54.4 3.2 23 604-626 11-33 (184)
167 1tue_A Replication protein E1; 93.9 0.024 8E-07 56.9 2.7 26 602-627 57-82 (212)
168 3e70_C DPA, signal recognition 93.9 0.046 1.6E-06 58.5 5.1 38 603-640 129-166 (328)
169 1e4v_A Adenylate kinase; trans 93.9 0.03 1E-06 55.4 3.4 24 605-628 2-25 (214)
170 3b85_A Phosphate starvation-in 93.9 0.04 1.4E-06 55.0 4.3 27 600-626 19-45 (208)
171 1ukz_A Uridylate kinase; trans 93.8 0.028 9.7E-07 54.8 3.0 24 605-628 17-40 (203)
172 3sr0_A Adenylate kinase; phosp 93.8 0.03 1E-06 55.8 3.3 24 605-628 2-25 (206)
173 2qby_A CDC6 homolog 1, cell di 93.8 0.04 1.4E-06 58.5 4.4 27 603-629 45-71 (386)
174 1htw_A HI0065; nucleotide-bind 93.8 0.031 1.1E-06 53.3 3.2 25 603-627 33-57 (158)
175 3b9q_A Chloroplast SRP recepto 93.7 0.043 1.5E-06 58.0 4.5 31 603-633 100-130 (302)
176 2www_A Methylmalonic aciduria 93.7 0.049 1.7E-06 58.6 4.9 41 604-644 75-115 (349)
177 3umf_A Adenylate kinase; rossm 93.7 0.034 1.2E-06 56.1 3.4 26 603-628 29-54 (217)
178 3lnc_A Guanylate kinase, GMP k 93.7 0.02 7E-07 57.3 1.8 24 604-627 28-52 (231)
179 1jjv_A Dephospho-COA kinase; P 93.7 0.026 9E-07 55.2 2.5 21 605-625 4-24 (206)
180 2xb4_A Adenylate kinase; ATP-b 93.7 0.033 1.1E-06 55.7 3.3 24 605-628 2-25 (223)
181 2if2_A Dephospho-COA kinase; a 93.7 0.032 1.1E-06 54.4 3.1 22 605-627 3-24 (204)
182 3be4_A Adenylate kinase; malar 93.7 0.035 1.2E-06 55.2 3.4 24 605-628 7-30 (217)
183 2orw_A Thymidine kinase; TMTK, 93.6 0.054 1.9E-06 52.8 4.7 59 682-740 76-149 (184)
184 1sxj_C Activator 1 40 kDa subu 93.6 0.053 1.8E-06 57.6 4.8 23 606-628 49-71 (340)
185 2i3b_A HCR-ntpase, human cance 93.5 0.037 1.3E-06 54.4 3.3 24 605-628 3-26 (189)
186 4edh_A DTMP kinase, thymidylat 93.5 0.061 2.1E-06 53.9 4.8 99 604-703 7-125 (213)
187 3tif_A Uncharacterized ABC tra 93.5 0.028 9.5E-07 57.1 2.3 26 603-628 31-56 (235)
188 1m7g_A Adenylylsulfate kinase; 93.5 0.048 1.6E-06 53.8 4.0 31 603-633 25-56 (211)
189 1w36_D RECD, exodeoxyribonucle 93.5 0.19 6.5E-06 58.1 9.6 43 600-642 161-205 (608)
190 1vma_A Cell division protein F 93.4 0.063 2.2E-06 56.8 5.1 39 603-641 104-142 (306)
191 2px0_A Flagellar biosynthesis 93.4 0.065 2.2E-06 56.4 5.1 41 603-643 105-146 (296)
192 2v9p_A Replication protein E1; 93.4 0.038 1.3E-06 58.6 3.3 28 600-627 123-150 (305)
193 4a74_A DNA repair and recombin 93.4 0.038 1.3E-06 54.5 3.1 26 602-627 24-49 (231)
194 2p5t_B PEZT; postsegregational 93.4 0.029 9.8E-07 57.3 2.3 25 604-628 33-57 (253)
195 2qm8_A GTPase/ATPase; G protei 93.4 0.061 2.1E-06 57.6 4.9 42 603-644 55-96 (337)
196 3kta_A Chromosome segregation 93.3 0.043 1.5E-06 52.5 3.3 24 605-628 28-51 (182)
197 1p9r_A General secretion pathw 93.2 0.081 2.8E-06 58.5 5.8 35 596-630 159-194 (418)
198 2c9o_A RUVB-like 1; hexameric 93.2 0.043 1.5E-06 61.2 3.6 26 603-628 63-88 (456)
199 1ak2_A Adenylate kinase isoenz 93.2 0.043 1.5E-06 55.1 3.3 25 604-628 17-41 (233)
200 2pcj_A ABC transporter, lipopr 93.2 0.034 1.2E-06 56.0 2.5 25 604-628 31-55 (224)
201 2oap_1 GSPE-2, type II secreti 93.2 0.046 1.6E-06 62.1 3.8 32 597-628 254-285 (511)
202 3r20_A Cytidylate kinase; stru 93.2 0.049 1.7E-06 55.5 3.6 27 602-628 8-34 (233)
203 2ce7_A Cell division protein F 93.2 0.083 2.8E-06 59.4 5.8 25 603-627 49-73 (476)
204 3tlx_A Adenylate kinase 2; str 93.2 0.065 2.2E-06 54.4 4.5 26 603-628 29-54 (243)
205 3nwj_A ATSK2; P loop, shikimat 93.1 0.059 2E-06 55.4 4.2 26 603-628 48-73 (250)
206 1g41_A Heat shock protein HSLU 93.1 0.05 1.7E-06 60.6 3.9 26 603-628 50-75 (444)
207 2ehv_A Hypothetical protein PH 93.1 0.04 1.4E-06 55.1 2.8 25 601-625 28-52 (251)
208 2gza_A Type IV secretion syste 93.1 0.059 2E-06 58.3 4.2 31 599-629 171-201 (361)
209 1sxj_A Activator 1 95 kDa subu 93.0 0.12 4E-06 58.6 6.9 38 603-645 77-114 (516)
210 3aez_A Pantothenate kinase; tr 93.0 0.046 1.6E-06 58.0 3.3 28 603-630 90-117 (312)
211 2jeo_A Uridine-cytidine kinase 93.0 0.047 1.6E-06 55.3 3.3 25 604-628 26-50 (245)
212 2onk_A Molybdate/tungstate ABC 93.0 0.042 1.4E-06 56.1 2.8 25 604-628 25-49 (240)
213 2qt1_A Nicotinamide riboside k 93.0 0.041 1.4E-06 54.0 2.6 24 604-627 22-45 (207)
214 2cbz_A Multidrug resistance-as 93.0 0.033 1.1E-06 56.7 2.0 26 603-628 31-56 (237)
215 2w0m_A SSO2452; RECA, SSPF, un 93.0 0.07 2.4E-06 52.4 4.4 34 603-636 23-56 (235)
216 3p32_A Probable GTPase RV1496/ 93.0 0.08 2.7E-06 57.0 5.1 42 603-644 79-120 (355)
217 2og2_A Putative signal recogni 93.0 0.067 2.3E-06 58.0 4.5 32 603-634 157-188 (359)
218 3foz_A TRNA delta(2)-isopenten 92.9 0.079 2.7E-06 56.3 4.9 25 604-628 11-35 (316)
219 1oix_A RAS-related protein RAB 92.9 0.051 1.7E-06 52.6 3.1 24 604-627 30-53 (191)
220 3exa_A TRNA delta(2)-isopenten 92.9 0.069 2.4E-06 56.9 4.3 25 604-628 4-28 (322)
221 1vht_A Dephospho-COA kinase; s 92.9 0.05 1.7E-06 53.7 3.1 23 603-625 4-26 (218)
222 2dhr_A FTSH; AAA+ protein, hex 92.9 0.081 2.8E-06 59.8 5.1 25 603-627 64-88 (499)
223 1sq5_A Pantothenate kinase; P- 92.8 0.083 2.8E-06 55.7 4.9 25 604-628 81-105 (308)
224 1uf9_A TT1252 protein; P-loop, 92.8 0.054 1.9E-06 52.4 3.2 24 603-626 8-31 (203)
225 2f9l_A RAB11B, member RAS onco 92.7 0.054 1.8E-06 52.5 3.0 23 604-626 6-28 (199)
226 4tmk_A Protein (thymidylate ki 92.6 0.092 3.1E-06 52.6 4.6 100 604-703 4-126 (213)
227 1mv5_A LMRA, multidrug resista 92.5 0.045 1.5E-06 55.8 2.3 26 603-628 28-53 (243)
228 1sgw_A Putative ABC transporte 92.5 0.046 1.6E-06 54.9 2.3 26 603-628 35-60 (214)
229 3a8t_A Adenylate isopentenyltr 92.5 0.082 2.8E-06 56.8 4.4 24 605-628 42-65 (339)
230 2p67_A LAO/AO transport system 92.5 0.11 3.8E-06 55.6 5.4 42 603-644 56-97 (341)
231 1b0u_A Histidine permease; ABC 92.5 0.046 1.6E-06 56.5 2.3 25 604-628 33-57 (262)
232 1g6h_A High-affinity branched- 92.5 0.047 1.6E-06 56.2 2.3 25 604-628 34-58 (257)
233 3gfo_A Cobalt import ATP-bindi 92.5 0.047 1.6E-06 57.0 2.3 25 604-628 35-59 (275)
234 2ff7_A Alpha-hemolysin translo 92.4 0.047 1.6E-06 55.9 2.3 26 603-628 35-60 (247)
235 2yv5_A YJEQ protein; hydrolase 92.4 0.083 2.8E-06 55.6 4.3 34 592-627 155-188 (302)
236 4g1u_C Hemin import ATP-bindin 92.4 0.048 1.6E-06 56.5 2.4 26 603-628 37-62 (266)
237 1ji0_A ABC transporter; ATP bi 92.4 0.048 1.7E-06 55.5 2.3 25 604-628 33-57 (240)
238 2yhs_A FTSY, cell division pro 92.4 0.085 2.9E-06 59.5 4.4 34 603-636 293-326 (503)
239 3kl4_A SRP54, signal recogniti 92.4 0.094 3.2E-06 58.2 4.7 40 603-642 97-136 (433)
240 2z4s_A Chromosomal replication 92.4 0.066 2.3E-06 59.5 3.5 27 603-629 130-156 (440)
241 2d2e_A SUFC protein; ABC-ATPas 92.4 0.058 2E-06 55.3 2.8 23 604-626 30-52 (250)
242 3ake_A Cytidylate kinase; CMP 92.3 0.071 2.4E-06 51.8 3.3 24 605-628 4-27 (208)
243 2zu0_C Probable ATP-dependent 92.3 0.06 2E-06 55.8 2.8 24 603-626 46-69 (267)
244 2ce2_X GTPase HRAS; signaling 92.2 0.073 2.5E-06 48.8 3.1 23 604-626 4-26 (166)
245 2pze_A Cystic fibrosis transme 92.2 0.052 1.8E-06 54.8 2.3 26 603-628 34-59 (229)
246 1z2a_A RAS-related protein RAB 92.2 0.07 2.4E-06 49.3 3.0 23 604-626 6-28 (168)
247 2ghi_A Transport protein; mult 92.2 0.052 1.8E-06 56.0 2.3 26 603-628 46-71 (260)
248 3v9p_A DTMP kinase, thymidylat 92.2 0.086 2.9E-06 53.4 3.8 40 603-643 25-68 (227)
249 3fvq_A Fe(3+) IONS import ATP- 92.2 0.063 2.2E-06 58.2 3.0 25 604-628 31-55 (359)
250 1svm_A Large T antigen; AAA+ f 92.2 0.08 2.7E-06 57.7 3.8 27 601-627 167-193 (377)
251 2olj_A Amino acid ABC transpor 92.1 0.054 1.9E-06 56.1 2.3 26 603-628 50-75 (263)
252 2ius_A DNA translocase FTSK; n 92.1 0.15 5.2E-06 57.7 6.1 45 603-647 167-213 (512)
253 2grj_A Dephospho-COA kinase; T 92.1 0.08 2.7E-06 52.1 3.4 23 605-627 14-36 (192)
254 1zu4_A FTSY; GTPase, signal re 92.1 0.12 4.1E-06 55.0 5.1 40 603-642 105-144 (320)
255 2dyk_A GTP-binding protein; GT 92.1 0.074 2.5E-06 48.8 3.0 22 605-626 3-24 (161)
256 2ixe_A Antigen peptide transpo 92.1 0.056 1.9E-06 56.2 2.3 26 603-628 45-70 (271)
257 1kao_A RAP2A; GTP-binding prot 92.0 0.076 2.6E-06 48.8 3.0 23 604-626 4-26 (167)
258 1vpl_A ABC transporter, ATP-bi 92.0 0.057 2E-06 55.7 2.3 26 603-628 41-66 (256)
259 1ltq_A Polynucleotide kinase; 92.0 0.07 2.4E-06 55.4 3.0 23 604-626 3-25 (301)
260 2wji_A Ferrous iron transport 92.0 0.073 2.5E-06 49.9 2.8 23 604-626 4-26 (165)
261 3dm5_A SRP54, signal recogniti 91.9 0.13 4.3E-06 57.3 5.1 40 603-642 100-139 (443)
262 1odf_A YGR205W, hypothetical 3 91.9 0.078 2.7E-06 55.7 3.2 26 604-629 32-57 (290)
263 2qi9_C Vitamin B12 import ATP- 91.9 0.061 2.1E-06 55.2 2.3 25 604-628 27-51 (249)
264 1g16_A RAS-related protein SEC 91.8 0.086 2.9E-06 48.8 3.1 23 604-626 4-26 (170)
265 2ihy_A ABC transporter, ATP-bi 91.8 0.061 2.1E-06 56.2 2.3 25 604-628 48-72 (279)
266 3llm_A ATP-dependent RNA helic 91.8 0.11 3.8E-06 52.1 4.2 48 596-643 69-119 (235)
267 2b8t_A Thymidine kinase; deoxy 91.8 0.44 1.5E-05 48.0 8.6 99 603-708 12-117 (223)
268 1uj2_A Uridine-cytidine kinase 91.8 0.082 2.8E-06 53.8 3.2 24 605-628 24-47 (252)
269 3crm_A TRNA delta(2)-isopenten 91.8 0.078 2.7E-06 56.6 3.1 25 604-628 6-30 (323)
270 3tqc_A Pantothenate kinase; bi 91.8 0.12 4.1E-06 55.1 4.6 25 605-629 94-118 (321)
271 2nq2_C Hypothetical ABC transp 91.8 0.056 1.9E-06 55.6 1.9 26 603-628 31-56 (253)
272 1z47_A CYSA, putative ABC-tran 91.7 0.073 2.5E-06 57.6 2.8 26 603-628 41-66 (355)
273 2yz2_A Putative ABC transporte 91.7 0.064 2.2E-06 55.5 2.3 26 603-628 33-58 (266)
274 1u8z_A RAS-related protein RAL 91.7 0.087 3E-06 48.4 3.0 23 604-626 5-27 (168)
275 1ek0_A Protein (GTP-binding pr 91.7 0.087 3E-06 48.6 3.0 23 604-626 4-26 (170)
276 2zej_A Dardarin, leucine-rich 91.7 0.067 2.3E-06 51.1 2.3 22 604-625 3-24 (184)
277 1lw7_A Transcriptional regulat 91.7 0.068 2.3E-06 57.7 2.5 26 603-628 170-195 (365)
278 1a7j_A Phosphoribulokinase; tr 91.6 0.078 2.7E-06 55.6 2.9 30 604-633 6-35 (290)
279 3rlf_A Maltose/maltodextrin im 91.6 0.075 2.6E-06 58.0 2.8 25 604-628 30-54 (381)
280 2yyz_A Sugar ABC transporter, 91.6 0.076 2.6E-06 57.6 2.8 25 604-628 30-54 (359)
281 1z0j_A RAB-22, RAS-related pro 91.6 0.089 3.1E-06 48.7 3.0 23 604-626 7-29 (170)
282 1wms_A RAB-9, RAB9, RAS-relate 91.6 0.088 3E-06 49.2 3.0 23 604-626 8-30 (177)
283 2ged_A SR-beta, signal recogni 91.6 0.088 3E-06 50.3 3.0 24 603-626 48-71 (193)
284 2it1_A 362AA long hypothetical 91.6 0.077 2.6E-06 57.6 2.8 25 604-628 30-54 (362)
285 1z08_A RAS-related protein RAB 91.6 0.092 3.2E-06 48.6 3.0 23 604-626 7-29 (170)
286 1c1y_A RAS-related protein RAP 91.5 0.093 3.2E-06 48.4 3.0 23 604-626 4-26 (167)
287 1hv8_A Putative ATP-dependent 91.5 0.41 1.4E-05 50.1 8.4 67 576-642 17-83 (367)
288 1u0j_A DNA replication protein 91.5 0.095 3.3E-06 54.4 3.3 25 603-627 104-128 (267)
289 1ky3_A GTP-binding protein YPT 91.4 0.095 3.2E-06 49.1 3.0 24 603-626 8-31 (182)
290 4ag6_A VIRB4 ATPase, type IV s 91.4 0.13 4.4E-06 55.9 4.4 39 602-642 34-72 (392)
291 1g29_1 MALK, maltose transport 91.4 0.082 2.8E-06 57.6 2.8 25 604-628 30-54 (372)
292 2qag_B Septin-6, protein NEDD5 91.4 0.072 2.5E-06 59.0 2.4 21 606-626 45-65 (427)
293 3ld9_A DTMP kinase, thymidylat 91.4 0.12 4.3E-06 52.1 4.0 44 605-648 23-67 (223)
294 2fn4_A P23, RAS-related protei 91.4 0.1 3.5E-06 48.8 3.1 23 604-626 10-32 (181)
295 1v43_A Sugar-binding transport 91.4 0.083 2.9E-06 57.5 2.8 25 604-628 38-62 (372)
296 3hjn_A DTMP kinase, thymidylat 91.4 0.16 5.5E-06 50.0 4.7 39 606-645 3-41 (197)
297 2erx_A GTP-binding protein DI- 91.3 0.094 3.2E-06 48.5 2.8 22 604-625 4-25 (172)
298 2npi_A Protein CLP1; CLP1-PCF1 91.3 0.09 3.1E-06 58.8 3.1 27 602-628 137-163 (460)
299 3q72_A GTP-binding protein RAD 91.3 0.094 3.2E-06 48.5 2.8 21 605-625 4-24 (166)
300 1yrb_A ATP(GTP)binding protein 91.3 0.18 6E-06 51.0 5.1 39 605-644 16-54 (262)
301 1u0l_A Probable GTPase ENGC; p 91.3 0.13 4.4E-06 54.1 4.1 34 593-627 160-193 (301)
302 2wjg_A FEOB, ferrous iron tran 91.3 0.094 3.2E-06 49.8 2.8 23 604-626 8-30 (188)
303 2gj8_A MNME, tRNA modification 91.3 0.099 3.4E-06 49.5 3.0 23 604-626 5-27 (172)
304 2nzj_A GTP-binding protein REM 91.3 0.096 3.3E-06 48.8 2.8 23 604-626 5-27 (175)
305 3nh6_A ATP-binding cassette SU 91.3 0.045 1.5E-06 58.0 0.6 26 603-628 80-105 (306)
306 2pjz_A Hypothetical protein ST 91.3 0.076 2.6E-06 54.9 2.3 25 603-627 30-54 (263)
307 1cr0_A DNA primase/helicase; R 91.3 0.15 5.2E-06 52.9 4.6 36 601-636 33-69 (296)
308 3gd7_A Fusion complex of cysti 91.2 0.09 3.1E-06 57.6 3.0 26 603-628 47-72 (390)
309 1r2q_A RAS-related protein RAB 91.2 0.11 3.6E-06 48.1 3.0 23 604-626 7-29 (170)
310 2qen_A Walker-type ATPase; unk 91.2 0.16 5.4E-06 53.1 4.7 35 593-627 21-55 (350)
311 1f2t_A RAD50 ABC-ATPase; DNA d 91.1 0.12 4E-06 48.6 3.3 23 605-627 25-47 (149)
312 1upt_A ARL1, ADP-ribosylation 91.1 0.086 2.9E-06 48.9 2.3 26 601-626 5-30 (171)
313 3q85_A GTP-binding protein REM 91.1 0.1 3.5E-06 48.4 2.8 21 605-625 4-24 (169)
314 2y8e_A RAB-protein 6, GH09086P 91.1 0.11 3.9E-06 48.4 3.1 24 603-626 14-37 (179)
315 2bbs_A Cystic fibrosis transme 91.0 0.077 2.6E-06 55.7 2.1 25 604-628 65-89 (290)
316 3bc1_A RAS-related protein RAB 91.0 0.11 3.8E-06 49.1 3.0 23 604-626 12-34 (195)
317 1pui_A ENGB, probable GTP-bind 91.0 0.062 2.1E-06 52.2 1.2 24 603-626 26-49 (210)
318 3d3q_A TRNA delta(2)-isopenten 91.0 0.11 3.7E-06 55.9 3.2 25 604-628 8-32 (340)
319 4dsu_A GTPase KRAS, isoform 2B 90.9 0.12 3.9E-06 48.9 3.0 24 603-626 4-27 (189)
320 3clv_A RAB5 protein, putative; 90.9 0.11 3.9E-06 49.2 3.0 23 604-626 8-30 (208)
321 1j8m_F SRP54, signal recogniti 90.9 0.19 6.4E-06 52.9 4.9 40 603-642 98-137 (297)
322 2wsm_A Hydrogenase expression/ 90.8 0.23 7.8E-06 48.7 5.2 26 603-628 30-55 (221)
323 1svi_A GTP-binding protein YSX 90.8 0.11 3.9E-06 49.4 3.0 24 603-626 23-46 (195)
324 2qnr_A Septin-2, protein NEDD5 90.8 0.1 3.5E-06 54.9 2.8 24 603-626 18-41 (301)
325 1r8s_A ADP-ribosylation factor 90.8 0.12 4.1E-06 47.6 3.0 21 606-626 3-23 (164)
326 3d31_A Sulfate/molybdate ABC t 90.8 0.07 2.4E-06 57.6 1.5 25 604-628 27-51 (348)
327 1q3t_A Cytidylate kinase; nucl 90.8 0.12 4.2E-06 51.8 3.3 24 605-628 18-41 (236)
328 1nrj_B SR-beta, signal recogni 90.8 0.12 4E-06 50.6 3.0 25 603-627 12-36 (218)
329 1z0f_A RAB14, member RAS oncog 90.7 0.12 4.2E-06 48.1 3.0 23 604-626 16-38 (179)
330 3tui_C Methionine import ATP-b 90.7 0.1 3.6E-06 56.6 2.8 25 604-628 55-79 (366)
331 1ls1_A Signal recognition part 90.7 0.22 7.6E-06 52.2 5.2 41 603-643 98-138 (295)
332 1ypw_A Transitional endoplasmi 90.7 0.14 4.8E-06 61.3 4.1 26 602-627 237-262 (806)
333 3tw8_B RAS-related protein RAB 90.6 0.11 3.9E-06 48.4 2.7 22 604-625 10-31 (181)
334 1g8p_A Magnesium-chelatase 38 90.6 2 6.7E-05 45.0 12.6 76 422-507 145-222 (350)
335 2bme_A RAB4A, RAS-related prot 90.6 0.13 4.5E-06 48.5 3.1 24 603-626 10-33 (186)
336 2v3c_C SRP54, signal recogniti 90.6 0.12 4.1E-06 57.4 3.3 39 604-642 100-138 (432)
337 2cxx_A Probable GTP-binding pr 90.6 0.12 4.3E-06 48.8 3.0 22 605-626 3-24 (190)
338 2cvh_A DNA repair and recombin 90.6 0.12 4.2E-06 50.4 3.0 24 602-625 19-42 (220)
339 2lkc_A Translation initiation 90.5 0.12 4.2E-06 48.3 2.8 24 603-626 8-31 (178)
340 2g6b_A RAS-related protein RAB 90.5 0.13 4.5E-06 48.2 3.0 24 603-626 10-33 (180)
341 2efe_B Small GTP-binding prote 90.5 0.13 4.6E-06 48.2 3.0 23 604-626 13-35 (181)
342 2a9k_A RAS-related protein RAL 90.5 0.13 4.5E-06 48.3 3.0 24 603-626 18-41 (187)
343 2oil_A CATX-8, RAS-related pro 90.4 0.13 4.4E-06 49.1 3.0 23 604-626 26-48 (193)
344 1tq4_A IIGP1, interferon-induc 90.4 0.15 5.2E-06 56.2 3.8 26 602-627 68-93 (413)
345 2hxs_A RAB-26, RAS-related pro 90.4 0.13 4.4E-06 48.2 2.8 23 604-626 7-29 (178)
346 3pqc_A Probable GTP-binding pr 90.4 0.13 4.6E-06 48.7 3.0 23 604-626 24-46 (195)
347 1m7b_A RND3/RHOE small GTP-bin 90.4 0.14 4.8E-06 48.6 3.1 24 603-626 7-30 (184)
348 4b3f_X DNA-binding protein smu 90.4 0.23 7.7E-06 57.8 5.4 35 597-631 199-233 (646)
349 1n0w_A DNA repair protein RAD5 90.4 0.13 4.5E-06 51.1 3.0 25 602-626 23-47 (243)
350 3con_A GTPase NRAS; structural 90.3 0.14 4.7E-06 48.7 3.0 23 604-626 22-44 (190)
351 2qmh_A HPR kinase/phosphorylas 90.3 0.13 4.4E-06 51.3 2.7 26 603-628 34-59 (205)
352 2f6r_A COA synthase, bifunctio 90.2 0.14 4.8E-06 53.2 3.2 21 605-625 77-97 (281)
353 1qde_A EIF4A, translation init 90.2 0.65 2.2E-05 45.5 7.9 44 576-620 25-68 (224)
354 2bov_A RAla, RAS-related prote 90.1 0.14 4.9E-06 49.1 3.0 23 604-626 15-37 (206)
355 3zvl_A Bifunctional polynucleo 90.1 0.1 3.5E-06 57.5 2.2 25 603-627 258-282 (416)
356 1oxx_K GLCV, glucose, ABC tran 90.1 0.071 2.4E-06 57.6 0.8 25 604-628 32-56 (353)
357 2rcn_A Probable GTPase ENGC; Y 90.1 0.13 4.4E-06 55.7 2.8 26 602-627 214-239 (358)
358 2gf0_A GTP-binding protein DI- 90.1 0.15 5.2E-06 48.6 3.1 24 603-626 8-31 (199)
359 2dr3_A UPF0273 protein PH0284; 90.1 0.23 8E-06 49.3 4.6 33 602-634 22-54 (247)
360 3kkq_A RAS-related protein M-R 90.0 0.15 5.2E-06 48.1 3.0 23 604-626 19-41 (183)
361 1m2o_B GTP-binding protein SAR 90.0 0.16 5.3E-06 48.9 3.1 24 603-626 23-46 (190)
362 2gno_A DNA polymerase III, gam 90.0 0.35 1.2E-05 51.0 6.1 107 603-738 18-127 (305)
363 2h92_A Cytidylate kinase; ross 90.0 0.16 5.3E-06 50.1 3.2 25 604-628 4-28 (219)
364 2ga8_A Hypothetical 39.9 kDa p 90.0 0.16 5.4E-06 54.9 3.4 26 603-628 24-49 (359)
365 1mh1_A RAC1; GTP-binding, GTPa 89.9 0.16 5.3E-06 47.8 3.0 23 604-626 6-28 (186)
366 3t1o_A Gliding protein MGLA; G 89.9 0.16 5.4E-06 48.2 3.0 25 604-628 15-39 (198)
367 2gf9_A RAS-related protein RAB 89.8 0.16 5.5E-06 48.4 3.0 23 604-626 23-45 (189)
368 1w5s_A Origin recognition comp 89.8 0.2 6.9E-06 53.8 4.1 26 603-628 50-77 (412)
369 2fg5_A RAB-22B, RAS-related pr 89.8 0.17 5.7E-06 48.5 3.1 24 603-626 23-46 (192)
370 1vec_A ATP-dependent RNA helic 89.8 0.75 2.6E-05 44.3 7.9 46 575-621 13-58 (206)
371 3t5g_A GTP-binding protein RHE 89.8 0.17 5.9E-06 47.6 3.1 23 604-626 7-29 (181)
372 1moz_A ARL1, ADP-ribosylation 89.7 0.12 4.2E-06 48.6 2.1 22 603-624 18-39 (183)
373 1nij_A Hypothetical protein YJ 89.7 0.15 5.2E-06 54.0 3.0 24 604-627 5-28 (318)
374 2ffh_A Protein (FFH); SRP54, s 89.7 0.28 9.5E-06 54.3 5.2 41 603-643 98-138 (425)
375 2bcg_Y Protein YP2, GTP-bindin 89.7 0.17 5.9E-06 48.9 3.1 23 604-626 9-31 (206)
376 1z06_A RAS-related protein RAB 89.6 0.17 5.8E-06 48.2 3.0 23 604-626 21-43 (189)
377 3lxx_A GTPase IMAP family memb 89.6 0.15 5.3E-06 51.0 2.8 23 604-626 30-52 (239)
378 1vg8_A RAS-related protein RAB 89.6 0.17 5.8E-06 48.8 3.0 24 603-626 8-31 (207)
379 2r8r_A Sensor protein; KDPD, P 89.6 0.32 1.1E-05 49.2 5.1 40 603-642 6-45 (228)
380 3bwd_D RAC-like GTP-binding pr 89.6 0.17 5.9E-06 47.4 3.0 24 603-626 8-31 (182)
381 3dz8_A RAS-related protein RAB 89.5 0.18 6.2E-06 48.2 3.1 23 605-627 25-47 (191)
382 3tkl_A RAS-related protein RAB 89.5 0.17 5.9E-06 48.1 3.0 23 604-626 17-39 (196)
383 2j37_W Signal recognition part 89.5 0.29 1E-05 55.4 5.3 38 604-641 102-139 (504)
384 2axn_A 6-phosphofructo-2-kinas 89.5 0.23 7.8E-06 56.4 4.4 31 603-633 35-65 (520)
385 2qag_C Septin-7; cell cycle, c 89.5 0.12 4E-06 57.2 2.0 23 605-627 33-55 (418)
386 1x3s_A RAS-related protein RAB 89.4 0.18 6.1E-06 47.9 3.0 24 603-626 15-38 (195)
387 3ihw_A Centg3; RAS, centaurin, 89.4 0.18 6.2E-06 48.3 3.0 24 603-626 20-43 (184)
388 1fzq_A ADP-ribosylation factor 89.4 0.17 5.7E-06 48.2 2.8 24 603-626 16-39 (181)
389 1zd9_A ADP-ribosylation factor 89.4 0.18 6.2E-06 48.2 3.0 24 603-626 22-45 (188)
390 3oes_A GTPase rhebl1; small GT 89.4 0.19 6.4E-06 48.6 3.1 24 603-626 24-47 (201)
391 2vp4_A Deoxynucleoside kinase; 89.3 0.1 3.5E-06 52.4 1.2 23 604-626 21-43 (230)
392 3lda_A DNA repair protein RAD5 89.3 0.47 1.6E-05 52.0 6.6 25 602-626 177-201 (400)
393 2a5j_A RAS-related protein RAB 89.2 0.19 6.3E-06 48.1 3.0 22 605-626 23-44 (191)
394 2iwr_A Centaurin gamma 1; ANK 89.2 0.14 5E-06 47.9 2.1 23 604-626 8-30 (178)
395 2atv_A RERG, RAS-like estrogen 89.2 0.19 6.5E-06 48.3 3.0 24 603-626 28-51 (196)
396 2xxa_A Signal recognition part 89.2 0.31 1.1E-05 54.0 5.1 40 604-643 101-141 (433)
397 3t5d_A Septin-7; GTP-binding p 89.1 0.17 5.9E-06 52.1 2.8 22 604-625 9-30 (274)
398 3c5c_A RAS-like protein 12; GD 89.1 0.19 6.7E-06 48.0 3.0 23 604-626 22-44 (187)
399 1nlf_A Regulatory protein REPA 89.1 0.21 7.1E-06 51.5 3.4 28 601-628 28-55 (279)
400 3cph_A RAS-related protein SEC 89.1 0.19 6.6E-06 48.6 3.0 24 603-626 20-43 (213)
401 2fna_A Conserved hypothetical 89.1 0.28 9.6E-06 51.3 4.5 34 593-628 22-55 (357)
402 3reg_A RHO-like small GTPase; 89.0 0.2 6.8E-06 48.0 3.0 24 603-626 23-46 (194)
403 1zbd_A Rabphilin-3A; G protein 89.0 0.19 6.4E-06 48.4 2.8 23 604-626 9-31 (203)
404 2iut_A DNA translocase FTSK; n 89.0 0.3 1E-05 55.9 4.9 44 603-646 214-259 (574)
405 1f6b_A SAR1; gtpases, N-termin 89.0 0.18 6E-06 49.0 2.6 23 603-625 25-47 (198)
406 3k53_A Ferrous iron transport 89.0 0.17 5.7E-06 52.0 2.6 24 604-627 4-27 (271)
407 3qf7_A RAD50; ABC-ATPase, ATPa 89.0 0.2 6.7E-06 54.2 3.3 23 605-627 25-47 (365)
408 2ocp_A DGK, deoxyguanosine kin 89.0 0.2 6.9E-06 50.3 3.1 24 605-628 4-27 (241)
409 2p5s_A RAS and EF-hand domain 89.0 0.2 6.7E-06 48.4 3.0 24 603-626 28-51 (199)
410 1zj6_A ADP-ribosylation factor 89.0 0.2 6.8E-06 47.6 3.0 23 603-625 16-38 (187)
411 4hlc_A DTMP kinase, thymidylat 88.9 0.35 1.2E-05 47.9 4.8 40 606-647 5-44 (205)
412 2fv8_A H6, RHO-related GTP-bin 88.9 0.21 7.2E-06 48.6 3.1 25 602-626 24-48 (207)
413 2ew1_A RAS-related protein RAB 88.9 0.21 7.2E-06 48.8 3.1 23 604-626 27-49 (201)
414 3eph_A TRNA isopentenyltransfe 88.9 0.21 7.2E-06 54.9 3.4 25 604-628 3-27 (409)
415 1ksh_A ARF-like protein 2; sma 88.8 0.19 6.4E-06 47.6 2.7 25 602-626 17-41 (186)
416 1e9r_A Conjugal transfer prote 88.8 0.26 9.1E-06 54.1 4.2 38 603-642 53-90 (437)
417 2h17_A ADP-ribosylation factor 88.8 0.2 6.8E-06 47.4 2.8 24 603-626 21-44 (181)
418 2hf9_A Probable hydrogenase ni 88.7 0.4 1.4E-05 47.0 5.1 25 604-628 39-63 (226)
419 3cr8_A Sulfate adenylyltranfer 88.7 0.16 5.6E-06 58.1 2.5 27 603-629 369-395 (552)
420 2fh5_B SR-beta, signal recogni 88.7 0.21 7.2E-06 48.6 3.0 24 603-626 7-30 (214)
421 3cnl_A YLQF, putative uncharac 88.7 0.28 9.7E-06 50.5 4.1 33 594-626 89-122 (262)
422 3cbq_A GTP-binding protein REM 88.7 0.16 5.6E-06 49.1 2.1 22 604-625 24-45 (195)
423 2cjw_A GTP-binding protein GEM 88.6 0.22 7.4E-06 48.1 3.0 23 604-626 7-29 (192)
424 1gwn_A RHO-related GTP-binding 88.6 0.22 7.7E-06 48.7 3.1 24 603-626 28-51 (205)
425 2fu5_C RAS-related protein RAB 88.6 0.14 4.7E-06 48.4 1.5 23 604-626 9-31 (183)
426 3qks_A DNA double-strand break 88.6 0.24 8.1E-06 48.9 3.3 25 604-628 24-48 (203)
427 3b5x_A Lipid A export ATP-bind 88.6 0.14 4.9E-06 58.8 1.9 27 602-628 368-394 (582)
428 3dkp_A Probable ATP-dependent 88.5 1 3.4E-05 44.9 8.0 44 576-620 40-83 (245)
429 2o52_A RAS-related protein RAB 88.5 0.22 7.6E-06 48.2 3.0 23 603-625 25-47 (200)
430 3tmk_A Thymidylate kinase; pho 88.4 0.25 8.6E-06 49.6 3.4 27 603-629 5-31 (216)
431 2b6h_A ADP-ribosylation factor 88.3 0.22 7.6E-06 47.9 2.8 22 603-624 29-50 (192)
432 1qhl_A Protein (cell division 88.2 0.082 2.8E-06 53.6 -0.4 23 606-628 30-52 (227)
433 2gco_A H9, RHO-related GTP-bin 88.2 0.25 8.6E-06 47.7 3.1 24 603-626 25-48 (201)
434 1bif_A 6-phosphofructo-2-kinas 88.1 0.35 1.2E-05 54.0 4.7 31 603-633 39-69 (469)
435 3euj_A Chromosome partition pr 88.1 0.24 8.1E-06 55.8 3.3 25 604-628 30-54 (483)
436 2q3h_A RAS homolog gene family 88.1 0.23 8E-06 47.7 2.8 25 602-626 19-43 (201)
437 2il1_A RAB12; G-protein, GDP, 88.1 0.22 7.6E-06 47.7 2.7 22 604-625 27-48 (192)
438 2atx_A Small GTP binding prote 88.1 0.26 8.9E-06 47.0 3.1 23 604-626 19-41 (194)
439 2gxq_A Heat resistant RNA depe 88.0 1.2 4.2E-05 42.8 8.0 45 576-621 12-56 (207)
440 1ko7_A HPR kinase/phosphatase; 88.0 0.52 1.8E-05 50.0 5.6 51 576-626 96-167 (314)
441 4bas_A ADP-ribosylation factor 87.9 0.23 8E-06 47.3 2.7 25 602-626 16-40 (199)
442 2j1l_A RHO-related GTP-binding 87.9 0.25 8.5E-06 48.4 3.0 23 603-625 34-56 (214)
443 1t9h_A YLOQ, probable GTPase E 87.8 0.12 4.1E-06 54.8 0.6 25 603-627 173-197 (307)
444 2h57_A ADP-ribosylation factor 87.8 0.21 7.1E-06 47.6 2.3 25 603-627 21-45 (190)
445 2hup_A RAS-related protein RAB 87.8 0.28 9.4E-06 47.6 3.1 24 603-626 29-52 (201)
446 2f7s_A C25KG, RAS-related prot 87.7 0.25 8.5E-06 48.2 2.8 23 604-626 26-48 (217)
447 3tqf_A HPR(Ser) kinase; transf 87.7 0.3 1E-05 47.6 3.3 24 603-626 16-39 (181)
448 3lxw_A GTPase IMAP family memb 87.6 0.22 7.6E-06 50.5 2.4 24 603-626 21-44 (247)
449 3hr8_A Protein RECA; alpha and 87.6 0.41 1.4E-05 51.8 4.6 32 603-634 61-92 (356)
450 2x77_A ADP-ribosylation factor 87.6 0.21 7.1E-06 47.5 2.1 23 602-624 21-43 (189)
451 2j0v_A RAC-like GTP-binding pr 87.4 0.3 1E-05 47.4 3.1 23 604-626 10-32 (212)
452 2qu8_A Putative nucleolar GTP- 87.3 0.26 8.7E-06 48.9 2.7 24 603-626 29-52 (228)
453 3b60_A Lipid A export ATP-bind 87.3 0.2 6.8E-06 57.6 2.1 26 603-628 369-394 (582)
454 3iby_A Ferrous iron transport 87.3 0.25 8.6E-06 50.6 2.6 22 605-626 3-24 (256)
455 3llu_A RAS-related GTP-binding 87.2 0.29 1E-05 47.0 3.0 23 603-625 20-42 (196)
456 4gzl_A RAS-related C3 botulinu 87.1 0.32 1.1E-05 47.2 3.1 24 603-626 30-53 (204)
457 3ber_A Probable ATP-dependent 87.0 1.4 4.9E-05 44.4 8.1 45 576-621 54-98 (249)
458 2xtp_A GTPase IMAP family memb 86.9 0.31 1E-05 49.4 3.0 24 603-626 22-45 (260)
459 3cpj_B GTP-binding protein YPT 86.9 0.31 1.1E-05 48.0 3.0 23 604-626 14-36 (223)
460 1q0u_A Bstdead; DEAD protein, 86.8 0.94 3.2E-05 44.4 6.5 66 576-642 15-81 (219)
461 2yl4_A ATP-binding cassette SU 86.8 0.21 7.1E-06 57.6 1.8 26 603-628 370-395 (595)
462 3b1v_A Ferrous iron uptake tra 86.7 0.3 1E-05 50.6 2.8 23 604-626 4-26 (272)
463 3fht_A ATP-dependent RNA helic 86.7 1.2 4.2E-05 47.3 7.8 67 576-643 36-105 (412)
464 3qf4_B Uncharacterized ABC tra 86.7 0.21 7.2E-06 57.6 1.8 27 602-628 380-406 (598)
465 3k9g_A PF-32 protein; ssgcid, 86.6 1.6 5.6E-05 44.1 8.4 34 609-643 34-67 (267)
466 3nbx_X ATPase RAVA; AAA+ ATPas 86.6 7.9 0.00027 43.5 14.6 85 417-513 105-192 (500)
467 1x6v_B Bifunctional 3'-phospho 86.6 0.44 1.5E-05 55.2 4.4 29 605-633 54-82 (630)
468 1pzn_A RAD51, DNA repair and r 86.6 0.34 1.2E-05 52.0 3.3 26 602-627 130-155 (349)
469 1p5z_B DCK, deoxycytidine kina 86.6 0.15 5.1E-06 52.1 0.5 25 604-628 25-49 (263)
470 3a1s_A Iron(II) transport prot 86.5 0.28 9.7E-06 50.2 2.5 23 604-626 6-28 (258)
471 1yqt_A RNAse L inhibitor; ATP- 86.4 0.3 1E-05 55.7 2.8 27 602-628 46-72 (538)
472 3q3j_B RHO-related GTP-binding 86.4 0.35 1.2E-05 47.5 3.0 24 603-626 27-50 (214)
473 3iuy_A Probable ATP-dependent 86.2 0.81 2.8E-05 45.1 5.6 46 576-622 31-76 (228)
474 1h65_A Chloroplast outer envel 86.2 0.55 1.9E-05 48.1 4.5 24 603-626 39-62 (270)
475 3gmt_A Adenylate kinase; ssgci 86.1 0.43 1.5E-05 48.4 3.6 24 605-628 10-33 (230)
476 2dpy_A FLII, flagellum-specifi 86.1 0.35 1.2E-05 53.7 3.1 27 602-628 156-182 (438)
477 3fmo_B ATP-dependent RNA helic 86.0 1.4 4.8E-05 45.9 7.6 44 576-620 103-148 (300)
478 2obl_A ESCN; ATPase, hydrolase 86.0 0.37 1.3E-05 51.8 3.1 26 603-628 71-96 (347)
479 2oxc_A Probable ATP-dependent 85.9 1.8 6.1E-05 42.8 8.0 45 576-621 35-79 (230)
480 2yc2_C IFT27, small RAB-relate 85.8 0.18 6.1E-06 48.5 0.5 23 604-626 21-43 (208)
481 3t34_A Dynamin-related protein 85.7 0.32 1.1E-05 52.2 2.5 22 605-626 36-57 (360)
482 3szr_A Interferon-induced GTP- 85.6 0.26 8.9E-06 57.0 1.9 22 606-627 48-69 (608)
483 3fmp_B ATP-dependent RNA helic 85.6 1.1 3.8E-05 49.4 7.0 67 576-643 103-172 (479)
484 2g3y_A GTP-binding protein GEM 85.5 0.39 1.3E-05 47.6 2.8 22 604-625 38-59 (211)
485 4a82_A Cystic fibrosis transme 85.3 0.18 6.3E-06 57.9 0.4 26 603-628 367-392 (578)
486 1m8p_A Sulfate adenylyltransfe 85.3 0.52 1.8E-05 54.1 4.2 28 604-631 397-424 (573)
487 3bor_A Human initiation factor 85.2 1.1 3.7E-05 44.7 6.0 46 575-621 40-85 (237)
488 3j16_B RLI1P; ribosome recycli 85.2 0.37 1.3E-05 55.8 2.8 19 606-624 106-124 (608)
489 4dhe_A Probable GTP-binding pr 85.1 0.22 7.4E-06 48.7 0.8 24 603-626 29-52 (223)
490 2pl3_A Probable ATP-dependent 85.1 1.6 5.3E-05 43.2 7.1 45 576-621 36-80 (236)
491 2gks_A Bifunctional SAT/APS ki 85.1 0.59 2E-05 53.4 4.4 31 604-634 373-403 (546)
492 1ega_A Protein (GTP-binding pr 85.1 0.39 1.3E-05 50.3 2.8 22 605-626 10-31 (301)
493 1t6n_A Probable ATP-dependent 85.0 2.4 8.1E-05 41.3 8.3 66 576-642 25-91 (220)
494 3kjh_A CO dehydrogenase/acetyl 85.0 0.54 1.9E-05 46.6 3.7 46 606-652 3-48 (254)
495 2aka_B Dynamin-1; fusion prote 85.0 0.39 1.3E-05 49.4 2.7 22 605-626 28-49 (299)
496 2qag_A Septin-2, protein NEDD5 84.9 0.34 1.2E-05 52.3 2.3 22 604-625 38-59 (361)
497 3fdi_A Uncharacterized protein 84.9 0.55 1.9E-05 46.2 3.6 26 603-628 6-31 (201)
498 2zr9_A Protein RECA, recombina 84.8 0.73 2.5E-05 49.5 4.8 37 602-638 60-96 (349)
499 2qtf_A Protein HFLX, GTP-bindi 84.8 0.41 1.4E-05 51.8 2.8 22 606-627 182-203 (364)
500 3zq6_A Putative arsenical pump 84.8 0.72 2.5E-05 48.7 4.7 48 604-652 15-62 (324)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=4e-144 Score=1399.15 Aligned_cols=550 Identities=40% Similarity=0.716 Sum_probs=508.8
Q ss_pred hhhccccccccceEE-----EEccchHHHHHHHHhcchhhhhccchhhhhhcccchhhhhhhhhhhccccccccchhhhH
Q psy17620 155 GELTKNDRKKFNTVL-----IVDVHARDIIDNFVRDGSAVRGELTKNDRKKFNTVLIVDVHAREIKDNFIGSNSLSRSLE 229 (741)
Q Consensus 155 ~Qlr~yw~~~~~~~~-----~idv~~r~vye~~~~~~~~~~~~~~~~e~~~f~~~~~v~~~w~~~~~~f~~~~~~~~~~~ 229 (741)
++--..|+.++..+. |++||.+|+|.+-+|.+++||++|||.|+++|+. ||+.|+.
T Consensus 222 ~~~v~~We~~L~~~~~il~~W~~vQ~~W~yLe~IF~~s~DI~~qLP~E~~rF~~---vd~~~~~---------------- 282 (3245)
T 3vkg_A 222 EEEANHWDDRLNKVRSLLDVWIDVQRRWVYLEGIFSGSGDINQLLPAESTRFKS---INSEFIA---------------- 282 (3245)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CTTTSHHHHHHHHH---HHHHHHH----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHhHHHHHHHHH---HHHHHHH----------------
Confidence 334445655655442 8899999999999999999999999999999999 9999999
Q ss_pred HHHHHhhhcCccchhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccCcHHHHHHhcC-CCchhhhhhHH
Q psy17620 230 SVIMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGS-SSPTAIQEHIV 308 (741)
Q Consensus 230 ~~im~~~~~~~~v~~~~~~~~~~~~L~~~~~~L~~i~k~L~~yLe~kR~~FPRFyFLsn~dLL~ils~-~~~~~i~~hl~ 308 (741)
+|+++.++|+|+++|..|++++.|+++++.|+.|||+|++|||+||.+|||||||||+|||+|||+ +||..||+|++
T Consensus 283 --im~~~~~~~~v~~~~~~~~~~~~L~~~~~~Le~iqk~L~~yLE~KR~~FPRFyFlSd~eLLeILs~~~dp~~vq~hl~ 360 (3245)
T 3vkg_A 283 --ILKKVSGAPLILEVLAIERIQQTMERLSDLLGKVQKALGEYLERQRSAFARFYFVGDEDLLEIIGNSKDIIKIQKHFR 360 (3245)
T ss_dssp --HHHHHHHSCBHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGGGSCHHHHHHHHHGGGCGGGTGGGGG
T ss_pred --HHHHHhcCCceEeecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhccCcHHHHHHHHcCCChHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 69999999999
Q ss_pred HHhhhc--------------------------------------------------------------------------
Q psy17620 309 KFAAKI-------------------------------------------------------------------------- 314 (741)
Q Consensus 309 k~f~~I-------------------------------------------------------------------------- 314 (741)
|||++|
T Consensus 361 K~F~~I~~l~f~~~~~~i~~m~S~eGE~v~~~~~v~~~~~~~ve~WL~~le~~m~~tl~~~~~~~~~~~~~~~~~~~~~~ 440 (3245)
T 3vkg_A 361 KMFAGLANLTLDDEKTTIIGMSSAEGETVTFKKPISIANGPKIHEWLTMVESEMKSTLATLLSESLQHFNQVDVNDHSKY 440 (3245)
T ss_dssp GTCSSCCEEEECTTSCEEEEEECTTSCEEEEEEEEESSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTCHHHH
T ss_pred HHHhhhheEEecCCCCEEEEEEcCCCCEEEeCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccH
Confidence 986210
Q ss_pred --------------------------------------------------------------------------------
Q psy17620 315 -------------------------------------------------------------------------------- 314 (741)
Q Consensus 315 -------------------------------------------------------------------------------- 314 (741)
T Consensus 441 ~~w~~~~p~Qv~l~~~qi~wT~~ve~al~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~v~~~l~~~~R~kl~~Lit~~V 520 (3245)
T 3vkg_A 441 SEWVDNYPTQLVLLTSQIVWSTQVDQALGGGTLQQSKIQEQLQSIEQTTQMILNNLADSVLQDLSAQKRKKFEHLITELV 520 (3245)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcHHHHHHHHHheeHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------CCcChHHHHHHhhhhhcccccCccCceEEEEeccccccccccccccccccccccccccCCCCCce
Q psy17620 315 ---------------MDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMGLNGRLV 379 (741)
Q Consensus 315 ---------------~~~~~f~W~~qLRyy~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~YgyEYlG~~~rLV 379 (741)
.+.++|+|++||||||+++..+..+.|.|++++++|. |||||+|+++|||
T Consensus 521 H~RDvv~~L~~~~~v~~~~dF~W~~qlRyy~~~~~~~~~~~~~v~~~~~~f~---------------YgyEYlG~~~rLV 585 (3245)
T 3vkg_A 521 HQRDVVRQLQKCKNLTGNKDFDWLYHMRYYYDATQENVLHKLVIHMANATFY---------------YGFEYLGIGERLV 585 (3245)
T ss_dssp HHHHHHHHHHTCCSCCSTTCHHHHTSEEEEECSSSSSSGGGEEEEETTEEEE---------------CCCCCCCSCCCCC
T ss_pred HHHHHHHHHHHhcCCCCcchhHHHhhhheeeccccCCcCceEEEEEcCceec---------------CccccCCCCCCCc
Confidence 1235799999999999876433334699999887766 9999999999999
Q ss_pred eccchhHHHHHHHHHHHcccCCCCC-----------------------------CCCHHHHHHHHHHhhhcCcceeeccc
Q psy17620 380 ITPLTDRIYLTITQALSMRLGAAPA-----------------------------GMDFLAFGKILSGLSQCGAWGCFDEF 430 (741)
Q Consensus 380 iTPLTdRc~~tl~~Al~~~~GGap~-----------------------------~~d~~~~~ri~~Glaq~GaW~cfDEf 430 (741)
+||||||||+||++||++++||+|+ ++||++|||||+|+|++|||+|||||
T Consensus 586 iTPLTdrcy~tl~~Al~~~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEf 665 (3245)
T 3vkg_A 586 QTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEF 665 (3245)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETT
T ss_pred CChHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhh
Confidence 9999999999999999999999865 68999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHHHHHHHhhcCceeEee-cceEEecCCceEEEeccCCCCCCCCchHHHhhcceeeeccCCCHHHH
Q psy17620 431 NRIDVSVLSVISTQLLTIRTALLINATRFQFE-GHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELI 509 (741)
Q Consensus 431 nrl~~~vLSvva~qi~~I~~al~~~~~~~~~~-g~~i~l~~~~~iFiTmNpgy~gr~eLP~nLk~lFRpvam~~PD~~~I 509 (741)
||++.+|||++++||++|+.|++++..++.|+ |++|.++|+|+|||||||||+||++||+|||++||||+|++||+++|
T Consensus 666 Nrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i 745 (3245)
T 3vkg_A 666 NRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMI 745 (3245)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCccchHHHHHHHHHHHHHHHHHhhcCCccccchhhHHHHHHHhhHhHhhh--------cc------------
Q psy17620 510 CQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAA--------LQ------------ 569 (741)
Q Consensus 510 ~ei~L~s~GF~~a~~La~Kl~~l~~l~~e~ls~q~hydfgLRalksVL~~a~~l~~~~--------~~------------ 569 (741)
+||+|+|.||.+|+.||+|++++|++|+||||+|+||||||||+|+||++||++||+. |+
T Consensus 746 ~ei~L~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~lkr~~~~~~~~~~~~~~~~~~~~~~~~ 825 (3245)
T 3vkg_A 746 AQVMLYSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIKRKCQPPQLPPITDAESKTKADQIYC 825 (3245)
T ss_dssp HHHHHHTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHHHHSCCCC------CHHHHHHHHHHHH
T ss_pred HHHHHHHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHhhhhhccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999987 54
Q ss_pred chHHHHHHHHHHhccCCCcchhh-----------------------------------------------HHHHHHHhhc
Q psy17620 570 LEESVVLMRALRDMNLPKFVSED-----------------------------------------------VVQMYETMLT 602 (741)
Q Consensus 570 ~~E~~~l~ral~~~~lPkl~~~D-----------------------------------------------v~qL~e~l~~ 602 (741)
.+|+.+|+|||+|+|+|||+.+| |+||||++.+
T Consensus 826 ~~E~~illralrd~nlpKl~~~D~plF~~li~DlFPgv~~~~~~~~~l~~ai~~~~~~~~L~~~~~~v~KviQLye~~~v 905 (3245)
T 3vkg_A 826 QYEIGVLLNSINDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNI 905 (3245)
T ss_dssp HHHHHHHHHHHHHTTTTTSCGGGHHHHHHHHHHHSTTCCCCCCCCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHhccCCCchhhHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHh
Confidence 67999999999999999999998 8999999999
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccC-CCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVL-GYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK 681 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~-~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~ 681 (741)
|||||||||||||||++|++|++|++.+ |.++..++|||||+|++||||.+||+|+||+||+|++++|+++.+..++..
T Consensus 906 RhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~~~~~~ 985 (3245)
T 3vkg_A 906 NHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGEST 985 (3245)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTTTSCHHHHHEEECTTTCCEEECHHHHHHHHHHTTSSSGGG
T ss_pred eeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCCCCchhhhceeecCCCCeeeccHHHHHHHHHHhcccCCCC
Confidence 9999999999999999999999999988 567889999999999999999999999999999999999999765444456
Q ss_pred CCeEEEEcCCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCCCCCCCCC
Q psy17620 682 ERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPIQSDSHPR 740 (741)
Q Consensus 682 ~~~WIVfDG~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L~~aSPAt 740 (741)
.++||||||||||.|||||||||||||+|||||||||++||+||+||||+||++|||||
T Consensus 986 ~~~WIvfDGpVDa~WIEnlNsVLDDNK~LtL~nGErI~l~~~~~liFEv~dL~~ASPAT 1044 (3245)
T 3vkg_A 986 KRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLKYATLAT 1044 (3245)
T ss_dssp EEEEEEEESCCCHHHHTTTHHHHSSSCEECCTTSCCEECCTTEEEEEEESCCTTCCHHH
T ss_pred CceEEEECCCCCHHHHHHHHHHhcCCCeeecCCCCeeecCCCCEEEEEeccccccChhh
Confidence 78999999999999999999999999999999999999999999999999999999998
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=1.1e-128 Score=1253.05 Aligned_cols=548 Identities=30% Similarity=0.516 Sum_probs=511.6
Q ss_pred hhhccccccccceEE-----EEccchHHHHHHHHhcchhhhhccchhhhhhcccchhhhhhhhhhhccccccccchhhhH
Q psy17620 155 GELTKNDRKKFNTVL-----IVDVHARDIIDNFVRDGSAVRGELTKNDRKKFNTVLIVDVHAREIKDNFIGSNSLSRSLE 229 (741)
Q Consensus 155 ~Qlr~yw~~~~~~~~-----~idv~~r~vye~~~~~~~~~~~~~~~~e~~~f~~~~~v~~~w~~~~~~f~~~~~~~~~~~ 229 (741)
++.-..|.+++..+. |++||.+|+|.+-+|.+++||++|||.|+++|+. ||+.|+.
T Consensus 281 ~~~~~~w~~~L~~~~~~l~~w~~vQ~~W~yLe~iF~~s~di~~qLp~e~~~F~~---vd~~~~~---------------- 341 (2695)
T 4akg_A 281 EQDCLDLESKLTKLSEIQVNWVEVQFYWLDLYGILGENLDIQNFLPLETSKFKS---LTSEYKM---------------- 341 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSHHHHHCHHHHHHHHH---HHHHHHH----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCcHHHHHHhHHHHHHHHH---HHHHHHH----------------
Confidence 444445655655442 8899999999999998889999999999999999 9999999
Q ss_pred HHHHHhhhcCccchhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccCcHHHHHHhcC-CCchhhhhhHH
Q psy17620 230 SVIMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGS-SSPTAIQEHIV 308 (741)
Q Consensus 230 ~~im~~~~~~~~v~~~~~~~~~~~~L~~~~~~L~~i~k~L~~yLe~kR~~FPRFyFLsn~dLL~ils~-~~~~~i~~hl~ 308 (741)
||+++.++|+|+++|..|++++.|+++++.|+.|||+|++|||+||.+|||||||||+|||+|||+ +||..||+|++
T Consensus 342 --im~~~~~~~~v~~~~~~~~~~~~L~~~~~~Le~iqk~L~~yLe~KR~~FPRFyFlsd~eLLeiLs~~~dp~~vq~hl~ 419 (2695)
T 4akg_A 342 --ITTRAFQLDTTIEVIHIPNFDTTLKLTIDSLKMIKSSLSTFLERQRRQFPRFYFLGNDDLLKIIGSGKHHDQVSKFMK 419 (2695)
T ss_dssp --HHHHHHTTCCSGGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHCHHHHHHHHHTTTTSGGGHHHHH
T ss_pred --HHHHHHhCCCeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcceecCcHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 79999999999
Q ss_pred HHhhhc--------------------------------------------------------------------------
Q psy17620 309 KFAAKI-------------------------------------------------------------------------- 314 (741)
Q Consensus 309 k~f~~I-------------------------------------------------------------------------- 314 (741)
|||++|
T Consensus 420 k~F~~i~~l~f~~~~i~~m~s~egE~v~~~~~v~~~~~~~ve~WL~~le~~m~~tl~~~~~~~~~~~~~~~~~~~w~~~~ 499 (2695)
T 4akg_A 420 KMFGSIESIIFLEDFITGVRSVEGEVLNLNEKIELKDSIQAQEWLNILDTEIKLSVFTQFRDCLGQIKDGTDIEVVVSKY 499 (2695)
T ss_dssp HHTSSEEEEEECSSEEEEEEETTSCEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTTS
T ss_pred HHhhhhhhEEecCceEEEEEcCCCCEEEeCCceecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHC
Confidence 997311
Q ss_pred -----------------------------------------------------------------------------CCc
Q psy17620 315 -----------------------------------------------------------------------------MDA 317 (741)
Q Consensus 315 -----------------------------------------------------------------------------~~~ 317 (741)
.+.
T Consensus 500 p~Qv~l~~~qi~wt~~ve~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~k~~~li~~~vh~rDvv~~l~~~~v~~~ 579 (2695)
T 4akg_A 500 IFQAILLSAQVMWTELVEKCLQTNQFSKYWKEVDMKIKGLLDKLNKSSDNVKKKIEALLVEYLHFNNVIGQLKNCSTKEE 579 (2695)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 013
Q ss_pred ChHHHHHHhhhhhcccccCccCceEEEEeccccccccccccccccccccccccccCCCCCceeccchhHHHHHHHHHHHc
Q psy17620 318 EEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMGLNGRLVITPLTDRIYLTITQALSM 397 (741)
Q Consensus 318 ~~f~W~~qLRyy~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~YgyEYlG~~~rLViTPLTdRc~~tl~~Al~~ 397 (741)
++|+|++||||||+++..+..+.|.|++++++|. |||||+|+++|||+||+|||||+++++|+++
T Consensus 580 ~~f~W~~qlR~y~~~~~~~~~~~~~v~~~~~~~~---------------YgyEYlG~~~rlViTPltdr~~~tl~~Al~~ 644 (2695)
T 4akg_A 580 ARLLWAKVQKFYQKNDTLDDLNSVFISQSGYLLQ---------------YKFEYIGIPERLIYTPLLLIGFATLTDSLHQ 644 (2695)
T ss_dssp HHHHHHHSCEEEECSSCSCGGGTEEEEETTEEEE---------------CCCCCCCSCCCCCCCHHHHHHHHHHHHHHHT
T ss_pred chHhHHhcceEEEcCccccccceeEEEEcCeEee---------------ccccccCCCCcceecHHHHHHHHHHHHHHHh
Confidence 4799999999999876533334688999887766 9999999999999999999999999999999
Q ss_pred ccCCCCC-----------------------------CCCHHHHHHHHHHhhhcCcceeecccccCChhhHHHHHHHHHHH
Q psy17620 398 RLGAAPA-----------------------------GMDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTI 448 (741)
Q Consensus 398 ~~GGap~-----------------------------~~d~~~~~ri~~Glaq~GaW~cfDEfnrl~~~vLSvva~qi~~I 448 (741)
++||+|+ ++|++.||++|+|++++|+|+|||||||++.+|||++++||..|
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~evLs~l~~~l~~i 724 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKVLSAVSANIQQI 724 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcChHHHHHHHHHHHHH
Confidence 9998864 68999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCceeEeecceEEecCCceEEEeccCCCCCCCCchHHHhhcceeeeccCCCHHHHHHHHHhhcCccchHHHHHH
Q psy17620 449 RTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKK 528 (741)
Q Consensus 449 ~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNpgy~gr~eLP~nLk~lFRpvam~~PD~~~I~ei~L~s~GF~~a~~La~K 528 (741)
+.|+.+++.++.++|++|+++|+|++|+||||||+||++||+|||++||||+|+.||++.|+|++|++.||.+++.||+|
T Consensus 725 ~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~s~Gf~~a~~la~k 804 (2695)
T 4akg_A 725 QNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQIMGFEDSKSLASK 804 (2695)
T ss_dssp HHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheEEEEeeCCCHHHHHHHHHHhcCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCccccchhhHHHHHHHhhHhHhhhccchHHHHHHHHHHhccCCCcchhh----------------
Q psy17620 529 MAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSED---------------- 592 (741)
Q Consensus 529 l~~l~~l~~e~ls~q~hydfgLRalksVL~~a~~l~~~~~~~~E~~~l~ral~~~~lPkl~~~D---------------- 592 (741)
++.+|++|++++|+|.|||||||++|+||+.||.++|..+ +|+.++++|++++|+||++.+|
T Consensus 805 iv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lkr~~~--~e~~~l~~al~~~~lpk~~~~D~~lf~~li~dlFp~~~ 882 (2695)
T 4akg_A 805 IVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEFG--EGEKTVVESLKRVILPSLGDTDELVFKDELSKIFDSAG 882 (2695)
T ss_dssp HHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHHHHSC--SSHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhhccCC--cHHHHHHHHHHHhccccCchhhHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999999874 6778999999999999998877
Q ss_pred ------------------------------HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccC-CCCeEEEEeCC
Q psy17620 593 ------------------------------VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL-GYPARTYTLNP 641 (741)
Q Consensus 593 ------------------------------v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~-~~~~~~~~inp 641 (741)
++|||+++.+|||||||||||||||++|++|++|++.+ |.++..++|||
T Consensus 883 ~~~~~~~l~~~i~~~~~~~~l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inp 962 (2695)
T 4akg_A 883 TPLNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDT 962 (2695)
T ss_dssp CCSSSSHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECT
T ss_pred CCCChHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 78999999999999999999999999999999999876 56788999999
Q ss_pred CccccccccccccCCCCCcccChHHHHHHHhcCCCCCC-CCCCeEEEEcCCCChhhhhhccccccCCceeeccCCCeeec
Q psy17620 642 KAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPG-SKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRL 720 (741)
Q Consensus 642 ka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~-~~~~~WIVfDG~vd~~wiE~LNsvLDdnk~L~L~nGeri~l 720 (741)
|++|++||||.+||+|+||+||+|++++|+++.+..++ ++.++|||||||+||.|||+|||||||||+|||+|||||++
T Consensus 963 k~~t~~el~G~~d~~t~eW~DGils~~~R~~~~~~~~~~~~~~~WivfDG~vD~~WIE~LNsVLDDNk~L~L~ngErI~l 1042 (2695)
T 4akg_A 963 KVLTKESLYGSMLKATLEWRDGLFTSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPI 1042 (2695)
T ss_dssp TTSCHHHHTTEECTTTCCEECCSHHHHHHHHHTCCCSSCSSEEEEEEECSCCCHHHHHTTHHHHSTTCEEECSSSCEEEC
T ss_pred CCCCHHHhcceecCCCCeEecChHHHHHHHHHhccccccCCCCeEEEECCCCCHHHHHHHHHHhcCCCccccCCCCEEec
Confidence 99999999999999999999999999999987654332 23489999999999999999999999999999999999999
Q ss_pred CCCceEEEEeCCCCCCCCCC
Q psy17620 721 LAHCQLLFEIHPIQSDSHPR 740 (741)
Q Consensus 721 ~~~~rliFE~~~L~~aSPAt 740 (741)
+|+|++||||+||++|||||
T Consensus 1043 ~~~~~llFEv~dL~~ASPAT 1062 (2695)
T 4akg_A 1043 PPNFRILFETDNLDHTTPAT 1062 (2695)
T ss_dssp CSSCEEEEEESCCTTSCHHH
T ss_pred CCCcEEEEEecccccCCccc
Confidence 99999999999999999998
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.91 E-value=1.3e-25 Score=293.27 Aligned_cols=162 Identities=16% Similarity=0.229 Sum_probs=144.0
Q ss_pred CCCCCCccc--cCChHHHHHHHHHHHHHHHHHhh---------------hhhhhHHHhchhhHHHHhhhhhccHHHHHHH
Q psy17620 1 MDFRTPQLT--FGEIEQWMTRVLDEMMTENLVCS---------------CQMTEWMLDNIGMTVLAANGVWWTAEVENVF 63 (741)
Q Consensus 1 v~f~~pv~~--~g~VE~WL~~le~~M~~tl~~~~---------------~~~~~W~~~~p~Qvvl~~~qi~wT~~ve~al 63 (741)
|+|.+||.+ .|+||.||.+||++|+.||+..+ .+|.+|+.+||+||+++++||+||++||+||
T Consensus 389 v~~~~~v~~~~~~~ve~WL~~le~~m~~tl~~~~~~~~~~~~~~~~~~~~~~~~w~~~~p~Qv~l~~~qi~wT~~ve~al 468 (3245)
T 3vkg_A 389 VTFKKPISIANGPKIHEWLTMVESEMKSTLATLLSESLQHFNQVDVNDHSKYSEWVDNYPTQLVLLTSQIVWSTQVDQAL 468 (3245)
T ss_dssp EEEEEEEESSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccHHHHHHHCcHHHHHHHHHheeHHHHHHHH
Confidence 578899855 57999999999999999998764 2478999999999999999999999999999
Q ss_pred Hhhhc---CChHHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccchhhhcccccccccccccccceeeeeechhhhhhh
Q psy17620 64 AKIRA---GNDRAMKDYLGAQNAQLDALVVKVRGELTKNDRKKFNTVLIVDVRGELTKNDRKKFNTVLIVDVHARDIIDN 140 (741)
Q Consensus 64 ~~~~~---g~~~~l~~~~~~~~~~L~~l~~~v~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~kl~ali~~~vH~rDii~~ 140 (741)
.+.+. |.+.+|++|++++..+|+.|+.++++++++.+|. |++||||++||+||||+.
T Consensus 469 ~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~v~~~l~~~~R~--------------------kl~~Lit~~VH~RDvv~~ 528 (3245)
T 3vkg_A 469 GGGTLQQSKIQEQLQSIEQTTQMILNNLADSVLQDLSAQKRK--------------------KFEHLITELVHQRDVVRQ 528 (3245)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH--------------------HHHHHHHHHHHHHHHHHH
T ss_pred HhccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH--------------------HHHHHHHHHHHHHHHHHH
Confidence 75432 2356899999999999999999999999999999 999999999999999999
Q ss_pred hhc-cCccCCCcccc-hhhcccccccc------ceEEEEccchHHHHHHH
Q psy17620 141 FIG-SDSLSPRSVVR-GELTKNDRKKF------NTVLIVDVHARDIIDNF 182 (741)
Q Consensus 141 l~~-~~v~~~~~~~W-~Qlr~yw~~~~------~~~~~idv~~r~vye~~ 182 (741)
|++ .+|.+++||.| +|+||||+++. +.+.++|+++.|.||.+
T Consensus 529 L~~~~~v~~~~dF~W~~qlRyy~~~~~~~~~~~~~v~~~~~~f~YgyEYl 578 (3245)
T 3vkg_A 529 LQKCKNLTGNKDFDWLYHMRYYYDATQENVLHKLVIHMANATFYYGFEYL 578 (3245)
T ss_dssp HHTCCSCCSTTCHHHHTSEEEEECSSSSSSGGGEEEEETTEEEECCCCCC
T ss_pred HHHhcCCCCcchhHHHhhhheeeccccCCcCceEEEEEcCceecCccccC
Confidence 999 99999999999 99999998653 45677899999988643
No 4
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.84 E-value=2e-22 Score=262.73 Aligned_cols=155 Identities=11% Similarity=0.128 Sum_probs=129.6
Q ss_pred CCCCCCccccC--ChHHHHHHHHHHHHHHHHHhh----------hhhhhHHHhchhhHHHHhhhhhccHHHHHHHHhhhc
Q psy17620 1 MDFRTPQLTFG--EIEQWMTRVLDEMMTENLVCS----------CQMTEWMLDNIGMTVLAANGVWWTAEVENVFAKIRA 68 (741)
Q Consensus 1 v~f~~pv~~~g--~VE~WL~~le~~M~~tl~~~~----------~~~~~W~~~~p~Qvvl~~~qi~wT~~ve~al~~~~~ 68 (741)
|+|.+||.+.| +||.||.+||++|+.||+..+ .++.+|+.+||+||++++.||+||++||+||..
T Consensus 446 v~~~~~v~~~~~~~ve~WL~~le~~m~~tl~~~~~~~~~~~~~~~~~~~w~~~~p~Qv~l~~~qi~wt~~ve~a~~~--- 522 (2695)
T 4akg_A 446 LNLNEKIELKDSIQAQEWLNILDTEIKLSVFTQFRDCLGQIKDGTDIEVVVSKYIFQAILLSAQVMWTELVEKCLQT--- 522 (2695)
T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred EEeCCceecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHChHHHHHHHHHHHHHHHHHHHHHh---
Confidence 57889998876 799999999999999998864 357899999999999999999999999999973
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccchhhhcccccccccccccccceeeeeechhhhhhhhhccCccC
Q psy17620 69 GNDRAMKDYLGAQNAQLDALVVKVRGELTKNDRKKFNTVLIVDVRGELTKNDRKKFNTVLIVDVHARDIIDNFIGSDSLS 148 (741)
Q Consensus 69 g~~~~l~~~~~~~~~~L~~l~~~v~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~kl~ali~~~vH~rDii~~l~~~~v~~ 148 (741)
++..++.++++ .+++.+... ++++++..|. |++||||++||+|||++.|++.+|.+
T Consensus 523 ~~~~~~~~~~~---~~~~~l~~~-~~~~~~~~r~--------------------k~~~li~~~vh~rDvv~~l~~~~v~~ 578 (2695)
T 4akg_A 523 NQFSKYWKEVD---MKIKGLLDK-LNKSSDNVKK--------------------KIEALLVEYLHFNNVIGQLKNCSTKE 578 (2695)
T ss_dssp TCHHHHHHHHH---HHHHHHHHH-HHTSCHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHCSSHH
T ss_pred ccHHHHHHHHH---HHHHHHHHH-hhccCHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34445554444 445555443 3567888888 99999999999999999999999999
Q ss_pred CCcccc-hhhcccccccc------ceEEEEccchHHHHHHH
Q psy17620 149 PRSVVR-GELTKNDRKKF------NTVLIVDVHARDIIDNF 182 (741)
Q Consensus 149 ~~~~~W-~Qlr~yw~~~~------~~~~~idv~~r~vye~~ 182 (741)
++||.| +|+||||+++. ..+.+.|+++.|.||.+
T Consensus 579 ~~~f~W~~qlR~y~~~~~~~~~~~~~v~~~~~~~~YgyEYl 619 (2695)
T 4akg_A 579 EARLLWAKVQKFYQKNDTLDDLNSVFISQSGYLLQYKFEYI 619 (2695)
T ss_dssp HHHHHHHHSCEEEECSSCSCGGGTEEEEETTEEEECCCCCC
T ss_pred cchHhHHhcceEEEcCccccccceeEEEEcCeEeecccccc
Confidence 999999 99999998653 34677899999888653
No 5
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.53 E-value=6.8e-07 Score=106.38 Aligned_cols=111 Identities=23% Similarity=0.257 Sum_probs=76.3
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc----cccccccccccCCCCCcccChHHHHHHHhcCCCCCCC
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA----VSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGS 680 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka----~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~ 680 (741)
.++++||||+|||++.+.+++.+. .....+|... .+..+++|.-..-.+.=..|.+...+++.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~-------- 556 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKH-------- 556 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHC--------
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhC--------
Confidence 699999999999999999999873 2344554333 34567777631100101236677777753
Q ss_pred CCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620 681 KERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH 731 (741)
Q Consensus 681 ~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~ 731 (741)
....++|| ..+++...+.|..+||+. .++-+.|..+.+ .++.+|+-+.
T Consensus 557 -~~~vl~lDEi~~~~~~~~~~Ll~~le~~-~~~~~~g~~~~~-~~~~iI~tsN 606 (758)
T 1r6b_X 557 -PHAVLLLDEIEKAHPDVFNILLQVMDNG-TLTDNNGRKADF-RNVVLVMTTN 606 (758)
T ss_dssp -SSEEEEEETGGGSCHHHHHHHHHHHHHS-EEEETTTEEEEC-TTEEEEEEEC
T ss_pred -CCcEEEEeCccccCHHHHHHHHHHhcCc-EEEcCCCCEEec-CCeEEEEecC
Confidence 35899999 557788888999999865 455667777776 5677777654
No 6
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.05 E-value=1.6e-05 Score=95.99 Aligned_cols=113 Identities=22% Similarity=0.323 Sum_probs=70.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc----ccccccccccCCCCCccc-ChHHHHHHHhcCCCCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV----SVIELYGVLNPETRDWYD-GLLSNIFRAVNKPLDP 678 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~----t~~eLyG~~d~~t~eW~D-Gvls~i~R~~~~~~~~ 678 (741)
++++++||||+|||++.+.++..+..-+. ....+|...+ ...+++|.- |.-..+.. |.++..+++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~--~~i~i~~~~~~~~~~~s~l~g~~-~~~~G~~~~g~l~~~~~~~------ 659 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEE--AMIRIDMTEYMEKHAVSRLIGAP-PGYVGYEEGGQLTEAVRRR------ 659 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGG--GEEEECTTTCCSSGGGGGC---------------CHHHHHHHC------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCC--cEEEEechhccchhHHHHHcCCC-CCCcCccccchHHHHHHhC------
Confidence 57999999999999999999998753222 3344554433 346677653 11112333 7788887752
Q ss_pred CCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEe
Q psy17620 679 GSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEI 730 (741)
Q Consensus 679 ~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~ 730 (741)
....++|| +.+++.....|..+||+.+ ++-..|..+.. .++.+|+-+
T Consensus 660 ---~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~-~~~~~g~~vd~-~~~iiI~ts 708 (854)
T 1qvr_A 660 ---PYSVILFDEIEKAHPDVFNILLQILDDGR-LTDSHGRTVDF-RNTVIILTS 708 (854)
T ss_dssp ---SSEEEEESSGGGSCHHHHHHHHHHHTTTE-ECCSSSCCEEC-TTEEEEEEC
T ss_pred ---CCeEEEEecccccCHHHHHHHHHHhccCc-eECCCCCEecc-CCeEEEEec
Confidence 34799999 5678888888999998764 45555665555 344466644
No 7
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.05 E-value=5.9e-06 Score=98.42 Aligned_cols=104 Identities=20% Similarity=0.255 Sum_probs=66.5
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCCe
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERK 684 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~~ 684 (741)
+++++||||+|||++.+.+++.+..-+.+ ...+|.. ++.+.... ..|.++..+++. ...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~--~i~i~~s-----~~~~~~~~-----~~~~l~~~~~~~---------~~~ 581 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEES--MIRIDMS-----EYMEKHST-----SGGQLTEKVRRK---------PYS 581 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTC--EEEEEGG-----GGCSSCCC-----C---CHHHHHHC---------SSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcc--eEEEech-----hccccccc-----ccchhhHHHHhC---------CCe
Confidence 59999999999999999999997432333 3444432 23222211 156777777743 346
Q ss_pred EEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620 685 YILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH 731 (741)
Q Consensus 685 WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~ 731 (741)
.++|| +.+++.....|..+||+. .++...|..+. +.++++|+-++
T Consensus 582 vl~lDEi~~~~~~~~~~Ll~~le~g-~~~~~~g~~~~-~~~~~iI~ttn 628 (758)
T 3pxi_A 582 VVLLDAIEKAHPDVFNILLQVLEDG-RLTDSKGRTVD-FRNTILIMTSN 628 (758)
T ss_dssp EEEEECGGGSCHHHHHHHHHHHHHS-BCC-----CCB-CTTCEEEEEES
T ss_pred EEEEeCccccCHHHHHHHHHHhccC-eEEcCCCCEec-cCCeEEEEeCC
Confidence 99999 667888999999999885 45555665544 45778888665
No 8
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.45 E-value=8.1e-05 Score=79.29 Aligned_cols=116 Identities=23% Similarity=0.319 Sum_probs=74.1
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccC----CCCeE------------------------EEEeCCCccccccccccc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVL----GYPAR------------------------TYTLNPKAVSVIELYGVL 653 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~----~~~~~------------------------~~~inpka~t~~eLyG~~ 653 (741)
...+++|+||||+|||++.+.+++.+... +.++. ... -|...+..+++|..
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~ 122 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVD-LPLGVSEDRVVGAL 122 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEE-ECTTCCHHHHHCEE
T ss_pred CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccc-cCCCcchhhheeec
Confidence 45679999999999999999999987531 11111 111 12333445667764
Q ss_pred cCC------CCCcccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCce
Q psy17620 654 NPE------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQ 725 (741)
Q Consensus 654 d~~------t~eW~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~r 725 (741)
+.. ...+..|.+... ....+++| +.+++.-.+.|..+|++........|.....+.++.
T Consensus 123 ~~~~~~~~~~~~~~~g~~~~a-------------~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~ 189 (350)
T 1g8p_A 123 DIERAISKGEKAFEPGLLARA-------------NRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFV 189 (350)
T ss_dssp CHHHHHHHCGGGEECCHHHHH-------------TTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEE
T ss_pred hhhhhhcCCceeecCceeeec-------------CCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceE
Confidence 321 123455554322 24799999 556777777777778776555556777777788888
Q ss_pred EEEEeC
Q psy17620 726 LLFEIH 731 (741)
Q Consensus 726 liFE~~ 731 (741)
+|.-+.
T Consensus 190 li~~~n 195 (350)
T 1g8p_A 190 LVGSGN 195 (350)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 887665
No 9
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.44 E-value=0.0011 Score=70.25 Aligned_cols=86 Identities=21% Similarity=0.184 Sum_probs=69.0
Q ss_pred CcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccC-CCCCCCCchHHHhhcce-ee
Q psy17620 422 GAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNP-GYAGRTELPESVKALFR-PV 499 (741)
Q Consensus 422 GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNp-gy~gr~eLP~nLk~lFR-pv 499 (741)
+.++++||+|+++.++.+.+.+ ++.. ..+.+.|.....++.+.++.|+|| ++.|+..||+.|...|. .+
T Consensus 110 ~~vl~iDEi~~~~~~~~~~Ll~-------~l~~--~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i 180 (331)
T 2r44_A 110 SNFILADEVNRSPAKVQSALLE-------CMQE--KQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKI 180 (331)
T ss_dssp SSEEEEETGGGSCHHHHHHHHH-------HHHH--SEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEE
T ss_pred ccEEEEEccccCCHHHHHHHHH-------HHhc--CceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEE
Confidence 4789999999999988776633 3322 245667888888889999999998 56777789999999998 48
Q ss_pred eccCCCHHHHHHHHHhh
Q psy17620 500 VCIVPDFELICQIMLFS 516 (741)
Q Consensus 500 am~~PD~~~I~ei~L~s 516 (741)
.+..||.+...+++-..
T Consensus 181 ~i~~p~~~~~~~il~~~ 197 (331)
T 2r44_A 181 HLTYLDKESELEVMRRV 197 (331)
T ss_dssp ECCCCCHHHHHHHHHHH
T ss_pred EcCCCCHHHHHHHHHhc
Confidence 99999999988877554
No 10
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.38 E-value=0.00049 Score=71.99 Aligned_cols=115 Identities=21% Similarity=0.272 Sum_probs=72.9
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc----cccccccccCCCCCccc-ChHHHHHHHhcCCCCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGVLNPETRDWYD-GLLSNIFRAVNKPLDP 678 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t----~~eLyG~~d~~t~eW~D-Gvls~i~R~~~~~~~~ 678 (741)
+.++++||||+|||++.+.+++.+..-+.+ +..++...++ ..+++|.... ...+.. |.+...+++.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~--~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~------ 118 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEA--MIRIDMTEYMEKHAVSRLIGAPPG-YVGYEEGGQLTEAVRRR------ 118 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGG--EEEEEGGGCCSTTHHHHHHCCCTT-STTTTTCCHHHHHHHHC------
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcc--eEEeecccccccccHHHhcCCCCc-cccccccchHHHHHHhC------
Confidence 689999999999999999999987543222 3334433332 3456765432 223433 7777777643
Q ss_pred CCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCC
Q psy17620 679 GSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHP 732 (741)
Q Consensus 679 ~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~ 732 (741)
....+++| ..+++.....|-.+|++.. ++-..|..+.++ ++.+|+-+..
T Consensus 119 ---~~~vl~lDEi~~l~~~~~~~Ll~~le~~~-~~~~~~~~~~~~-~~iiI~ttn~ 169 (311)
T 4fcw_A 119 ---PYSVILFDAIEKAHPDVFNILLQMLDDGR-LTDSHGRTVDFR-NTVIIMTSNL 169 (311)
T ss_dssp ---SSEEEEEETGGGSCHHHHHHHHHHHHHSE-EECTTSCEEECT-TEEEEEEEST
T ss_pred ---CCeEEEEeChhhcCHHHHHHHHHHHhcCE-EEcCCCCEEECC-CcEEEEeccc
Confidence 34799999 4456677777777777653 344556666654 3446665543
No 11
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.32 E-value=0.0004 Score=78.80 Aligned_cols=134 Identities=12% Similarity=0.139 Sum_probs=79.9
Q ss_pred CCcchhh--HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccC
Q psy17620 586 PKFVSED--VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDG 663 (741)
Q Consensus 586 Pkl~~~D--v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DG 663 (741)
+.++..+ +..+...+..+.+|+|+||||+|||++.+.+++.+.. ......++....+.++++|.++... .-..|
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~~---~~~f~~~~~~~~t~~dL~G~~~~~~-~~~~g 97 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQN---ARAFEYLMTRFSTPEEVFGPLSIQA-LKDEG 97 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBSS---CCEEEEECCTTCCHHHHHCCBC---------
T ss_pred hhhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHhh---hhHHHHHHHhcCCHHHhcCcccHHH-Hhhch
Confidence 4444433 4456667778899999999999999999999987632 2223344444446689999764211 00112
Q ss_pred hHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCC
Q psy17620 664 LLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPI 733 (741)
Q Consensus 664 vls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L 733 (741)
.+. ....+......++++| +..++.....|-.+|++.. ++. .|.....|..+ +|+-++.+
T Consensus 98 ~~~-------~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~-v~i-~G~~~~~~~~~-iI~ATN~l 159 (500)
T 3nbx_X 98 RYE-------RLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQ-FRN-GAHVEKIPMRL-LVAASNEL 159 (500)
T ss_dssp --C-------BCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSE-EEC-SSSEEECCCCE-EEEEESSC
T ss_pred hHH-------hhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHh-ccC-CCCcCCcchhh-hhhccccC
Confidence 111 0111111134689999 5577777788888887654 344 57767766554 46666544
No 12
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.13 E-value=0.00017 Score=75.98 Aligned_cols=120 Identities=14% Similarity=0.114 Sum_probs=62.9
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE 682 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~ 682 (741)
..+++|+||||+|||++.+.+++.++ .+ ++.++. .++.+.+- .-..+.+..+++++..... ...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~---~~--~i~v~~-----~~l~~~~~----g~~~~~i~~~f~~a~~~~~--~~~ 99 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG---IN--PIMMSA-----GELESGNA----GEPAKLIRQRYREAAEIIR--KGN 99 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT---CC--CEEEEH-----HHHHCC-------HHHHHHHHHHHHHHHHHT--TSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CC--EEEEeH-----HHhhhccC----chhHHHHHHHHHHHHHHHh--cCC
Confidence 45899999999999999999999873 22 333332 23322210 1123344555555421000 124
Q ss_pred CeEEEEcCCCCh----------------hhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCCCCCCCC
Q psy17620 683 RKYILFDGDVDA----------------LWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPIQSDSHP 739 (741)
Q Consensus 683 ~~WIVfDG~vd~----------------~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L~~aSPA 739 (741)
+..|++| ++|. .+...|..+||+.....+.......-.+++.+|.-+.+....-||
T Consensus 100 ~~vl~iD-EiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~a 171 (293)
T 3t15_A 100 MCCLFIN-DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAP 171 (293)
T ss_dssp CCCEEEE-CCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CH
T ss_pred CeEEEEe-chhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHH
Confidence 5788888 2321 244667777776554444444444445677888888777666554
No 13
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.13 E-value=0.00093 Score=70.93 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=80.7
Q ss_pred HHHHHhccCCCcchhh--HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccccccccccc
Q psy17620 577 MRALRDMNLPKFVSED--VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLN 654 (741)
Q Consensus 577 ~ral~~~~lPkl~~~D--v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d 654 (741)
...++....+.++..+ +..+...+...++++|+||||+|||++.+.+++.+. .+.......|. .+..++.|...
T Consensus 18 ~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~---~~~~~i~~~~~-~~~~~l~g~~~ 93 (331)
T 2r44_A 18 IKEVIDEVGKVVVGQKYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMD---LDFHRIQFTPD-LLPSDLIGTMI 93 (331)
T ss_dssp HHHHHHHHTTTCCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTT---CCEEEEECCTT-CCHHHHHEEEE
T ss_pred HHHHHHHhccceeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhC---CCeEEEecCCC-CChhhcCCcee
Confidence 3344444445555443 444556666788999999999999999999998863 33332223332 23355666542
Q ss_pred --CCCCC--cccChHHHHHHHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEE
Q psy17620 655 --PETRD--WYDGLLSNIFRAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLF 728 (741)
Q Consensus 655 --~~t~e--W~DGvls~i~R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliF 728 (741)
+..+. |..|.+ ...++++| ..+++.-...|..+|++.. +++ .|.....+..+.++.
T Consensus 94 ~~~~~~~~~~~~g~l----------------~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~-~~~-~g~~~~~~~~~~via 155 (331)
T 2r44_A 94 YNQHKGNFEVKKGPV----------------FSNFILADEVNRSPAKVQSALLECMQEKQ-VTI-GDTTYPLDNPFLVLA 155 (331)
T ss_dssp EETTTTEEEEEECTT----------------CSSEEEEETGGGSCHHHHHHHHHHHHHSE-EEE-TTEEEECCSSCEEEE
T ss_pred ecCCCCceEeccCcc----------------cccEEEEEccccCCHHHHHHHHHHHhcCc-eee-CCEEEECCCCEEEEE
Confidence 22222 333322 13699999 3456666677777777653 344 577777787777775
Q ss_pred EeC
Q psy17620 729 EIH 731 (741)
Q Consensus 729 E~~ 731 (741)
-+.
T Consensus 156 t~n 158 (331)
T 2r44_A 156 TQN 158 (331)
T ss_dssp EEC
T ss_pred ecC
Confidence 433
No 14
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.12 E-value=0.00038 Score=74.00 Aligned_cols=106 Identities=18% Similarity=0.241 Sum_probs=66.0
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKER 683 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~~ 683 (741)
.+|+|+||||+|||++.+.+++.+. .+ ...+|..+++ ..|-+..++++. ...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~---~~--~~~~~~~~~~---------------~~~~~~~~~~~~--------~~~ 107 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS---AN--IKTTAAPMIE---------------KSGDLAAILTNL--------SEG 107 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT---CC--EEEEEGGGCC---------------SHHHHHHHHHTC--------CTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC---CC--eEEecchhcc---------------chhHHHHHHHhc--------cCC
Confidence 4899999999999999999988753 22 3333322221 233445555532 245
Q ss_pred eEEEEc--CCCChhhhhhccccccCCceeeccCC----C--eeecCCCceEEEEeCCCCCCCC
Q psy17620 684 KYILFD--GDVDALWIENMNSVMDDNKILTLANG----E--RIRLLAHCQLLFEIHPIQSDSH 738 (741)
Q Consensus 684 ~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nG----e--ri~l~~~~rliFE~~~L~~aSP 738 (741)
..+++| +.+++.+.+.|..+|++.+...+..+ . ++.+| ++++|.-+.......|
T Consensus 108 ~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn~~~~l~~ 169 (338)
T 3pfi_A 108 DILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATTRAGMLSN 169 (338)
T ss_dssp CEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC-CCEEEEEESCGGGSCH
T ss_pred CEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC-CeEEEEeCCCccccCH
Confidence 799999 66778899999999988765433211 2 22333 6788887776544443
No 15
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.12 E-value=0.00061 Score=69.98 Aligned_cols=117 Identities=18% Similarity=0.226 Sum_probs=71.6
Q ss_pred HHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCC-C--CCcccChHHHHHH
Q psy17620 598 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPE-T--RDWYDGLLSNIFR 670 (741)
Q Consensus 598 e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~-t--~eW~DGvls~i~R 670 (741)
.......+|+|+||||+|||++.+.+++.....+. ....+|...++. .+|||..... + .....|.+..
T Consensus 24 ~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~--- 98 (265)
T 2bjv_A 24 HLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQG--PFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFER--- 98 (265)
T ss_dssp HHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTS--CEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHH---
T ss_pred HHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCC--CeEEEecCCCChhHHHHHhcCCcccccccccccccchhhh---
Confidence 33456789999999999999999999987653332 344566555432 4567753210 0 1123454432
Q ss_pred HhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620 671 AVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH 731 (741)
Q Consensus 671 ~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~ 731 (741)
+ ....+++| +.+++...+.|..+|++... -+.|.....+.++++|+-++
T Consensus 99 -a---------~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~--~~~g~~~~~~~~~~iI~atn 149 (265)
T 2bjv_A 99 -A---------DGGTLFLDELATAPMMVQEKLLRVIEYGEL--ERVGGSQPLQVNVRLVCATN 149 (265)
T ss_dssp -T---------TTSEEEEESGGGSCHHHHHHHHHHHHHCEE--CCCCC--CEECCCEEEEEES
T ss_pred -c---------CCcEEEEechHhcCHHHHHHHHHHHHhCCe--ecCCCcccccCCeEEEEecC
Confidence 1 23589999 55677777778888876643 23344445566788888665
No 16
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.11 E-value=0.00084 Score=65.41 Aligned_cols=98 Identities=14% Similarity=0.158 Sum_probs=53.3
Q ss_pred HHHHHHhhcc--ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHH
Q psy17620 594 VQMYETMLTR--HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRA 671 (741)
Q Consensus 594 ~qL~e~l~~r--~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~ 671 (741)
.++.+.+... ..++|+||+|+|||++.+.+++.+..-+.......+++.... ....+...+..
T Consensus 27 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~ 91 (226)
T 2chg_A 27 QRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER---------------GIDVVRHKIKE 91 (226)
T ss_dssp HHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT---------------CHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccccc---------------ChHHHHHHHHH
Confidence 3444444443 349999999999999999999876432222223333322110 01122233333
Q ss_pred hcCCCCCCCCCCeEEEEcC--CCChhhhhhccccccC
Q psy17620 672 VNKPLDPGSKERKYILFDG--DVDALWIENMNSVMDD 706 (741)
Q Consensus 672 ~~~~~~~~~~~~~WIVfDG--~vd~~wiE~LNsvLDd 706 (741)
..............|++|. .+++...+.|..++++
T Consensus 92 ~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~ 128 (226)
T 2chg_A 92 FARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM 128 (226)
T ss_dssp HHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHH
T ss_pred HhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHh
Confidence 3222111124678999993 3555556667666654
No 17
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.10 E-value=0.0011 Score=70.26 Aligned_cols=115 Identities=23% Similarity=0.333 Sum_probs=75.3
Q ss_pred hhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc----cccccccccCC-CCC--cccChHHHHHHHh
Q psy17620 600 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGVLNPE-TRD--WYDGLLSNIFRAV 672 (741)
Q Consensus 600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t----~~eLyG~~d~~-t~e--W~DGvls~i~R~~ 672 (741)
.....+|+|+||||+|||++.+.++......+.+ ...+|..+++ ..+|||+.... |+. -..|.|.. +
T Consensus 22 a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~--~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~----a 95 (304)
T 1ojl_A 22 APSDATVLIHGDSGTGKELVARALHACSARSDRP--LVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVE----A 95 (304)
T ss_dssp CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSC--CCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHH----H
T ss_pred hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCC--eEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHh----c
Confidence 3457899999999999999999999876544333 3445555554 36788874211 111 23444432 2
Q ss_pred cCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620 673 NKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH 731 (741)
Q Consensus 673 ~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~ 731 (741)
....+++| +.+++.....|..+|++...- +.|..-..+.++++|+-++
T Consensus 96 ---------~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~riI~atn 145 (304)
T 1ojl_A 96 ---------DGGTLFLDEIGDISPLMQVRLLRAIQEREVQ--RVGSNQTISVDVRLIAATH 145 (304)
T ss_dssp ---------TTSEEEEESCTTCCHHHHHHHHHHHHSSBCC--BTTBCCCCBCCCEEEEEES
T ss_pred ---------CCCEEEEeccccCCHHHHHHHHHHHhcCEee--ecCCcccccCCeEEEEecC
Confidence 22579999 667777777788888876543 3444455677888888775
No 18
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.88 E-value=0.0014 Score=75.87 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=30.8
Q ss_pred HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+..+...+...+.++|+|||||||||+.+.+++.+.
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 345666677889999999999999999999999874
No 19
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.86 E-value=0.0033 Score=66.06 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=66.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE 682 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~ 682 (741)
.++|+|+||||+|||++.+.+++.+. . ....++..+++. .+-+...++.. ...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~---~--~~~~~~~~~~~~---------------~~~l~~~l~~~-------~~~ 90 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELG---V--NLRVTSGPAIEK---------------PGDLAAILANS-------LEE 90 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHT---C--CEEEECTTTCCS---------------HHHHHHHHTTT-------CCT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhC---C--CEEEEeccccCC---------------hHHHHHHHHHh-------ccC
Confidence 47899999999999999999998763 2 233344333321 11122222210 124
Q ss_pred CeEEEEc--CCCChhhhhhccccccCCceeeccCCC----eee-cCCCceEEEEeCCCCCCCCC
Q psy17620 683 RKYILFD--GDVDALWIENMNSVMDDNKILTLANGE----RIR-LLAHCQLLFEIHPIQSDSHP 739 (741)
Q Consensus 683 ~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGe----ri~-l~~~~rliFE~~~L~~aSPA 739 (741)
...+++| +.+++...+.|..++++...-.+.... .+. .++++++|.-+.......|+
T Consensus 91 ~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~ 154 (324)
T 1hqc_A 91 GDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAP 154 (324)
T ss_dssp TCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCS
T ss_pred CCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHH
Confidence 5799999 556777777788888776544332211 121 23467888887766555543
No 20
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.85 E-value=0.0016 Score=67.96 Aligned_cols=87 Identities=18% Similarity=0.234 Sum_probs=53.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCC--CeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGY--PARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGS 680 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~--~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~ 680 (741)
.++++|+||||+|||++.+.+++.+...+. ...+..+++..+. .+++|.. .+-+..++++.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~-~~~~g~~--------~~~~~~~~~~~-------- 129 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV-GQYIGHT--------APKTKEVLKRA-------- 129 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC-CSSTTCH--------HHHHHHHHHHH--------
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh-hhccccc--------HHHHHHHHHhc--------
Confidence 457999999999999999999998865432 2234555544332 3333332 11234444443
Q ss_pred CCCeEEEEcC-----------CCChhhhhhccccccCC
Q psy17620 681 KERKYILFDG-----------DVDALWIENMNSVMDDN 707 (741)
Q Consensus 681 ~~~~WIVfDG-----------~vd~~wiE~LNsvLDdn 707 (741)
.+..|++|- +.++...+.|..+|++.
T Consensus 130 -~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~ 166 (309)
T 3syl_A 130 -MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN 166 (309)
T ss_dssp -TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC
T ss_pred -CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC
Confidence 235899992 22556667777777754
No 21
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.81 E-value=0.0032 Score=68.35 Aligned_cols=97 Identities=19% Similarity=0.159 Sum_probs=52.8
Q ss_pred hhccc-eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCC-CCcccChHHHHHHHhcCCCC
Q psy17620 600 MLTRH-STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPET-RDWYDGLLSNIFRAVNKPLD 677 (741)
Q Consensus 600 l~~r~-gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t-~eW~DGvls~i~R~~~~~~~ 677 (741)
..... -+.|+||+||||||+++++...+........+..-+|-.......-+.+.... ..-..+ +...++++-.
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~-~~~~La~aL~--- 194 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLG-FSEALRSALR--- 194 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSC-HHHHHHHHTT---
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCC-HHHHHHHHhh---
Confidence 33444 47899999999999999999887653212223333443332221111111000 000111 2334444422
Q ss_pred CCCCCCeEEEEcCCCChhhhhhcccc
Q psy17620 678 PGSKERKYILFDGDVDALWIENMNSV 703 (741)
Q Consensus 678 ~~~~~~~WIVfDG~vd~~wiE~LNsv 703 (741)
.++..|++|-|-|++-++.+-..
T Consensus 195 ---~~PdvillDEp~d~e~~~~~~~~ 217 (356)
T 3jvv_A 195 ---EDPDIILVGEMRDLETIRLALTA 217 (356)
T ss_dssp ---SCCSEEEESCCCSHHHHHHHHHH
T ss_pred ---hCcCEEecCCCCCHHHHHHHHHH
Confidence 25689999999998776664443
No 22
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.74 E-value=0.0027 Score=59.33 Aligned_cols=37 Identities=14% Similarity=0.032 Sum_probs=29.1
Q ss_pred HHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620 597 YETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYP 633 (741)
Q Consensus 597 ~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~ 633 (741)
.........|+|+||||+|||++.+.++......+.+
T Consensus 18 ~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~ 54 (145)
T 3n70_A 18 QQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGE 54 (145)
T ss_dssp HHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSC
T ss_pred HHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCC
Confidence 3444677899999999999999999999876443444
No 23
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.67 E-value=0.00079 Score=72.99 Aligned_cols=92 Identities=14% Similarity=0.348 Sum_probs=51.4
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK 681 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~ 681 (741)
..++++|+||||+|||++.+.+++.+. . .+..++...++...++|.- ..+.+..++....... ...
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~---~--~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~--~~~ 136 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLD---I--PIAISDATSLTEAGYVGED-------VENILTRLLQASDWNV--QKA 136 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT---C--CEEEEEGGGCC---------------CTHHHHHHHHHTTTCH--HHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhC---C--CEEEecchhhhhcCcCCcc-------HHHHHHHHHhhccchh--hhc
Confidence 467899999999999999999999873 2 3344554444444444431 1345555555332110 011
Q ss_pred CCeEEEEc--CCCChh--------------hhhhccccccCC
Q psy17620 682 ERKYILFD--GDVDAL--------------WIENMNSVMDDN 707 (741)
Q Consensus 682 ~~~WIVfD--G~vd~~--------------wiE~LNsvLDdn 707 (741)
....+++| ..+.+. ..+.|..+||+.
T Consensus 137 ~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~ 178 (376)
T 1um8_A 137 QKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGS 178 (376)
T ss_dssp TTSEEEEETGGGC--------------CHHHHHHHHHHHHCC
T ss_pred CCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcc
Confidence 45788999 223333 567777888743
No 24
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=96.63 E-value=0.0016 Score=75.42 Aligned_cols=110 Identities=16% Similarity=0.208 Sum_probs=75.0
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccC--CCCC--cccChHHHHHHHhcCCCCCCC
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNP--ETRD--WYDGLLSNIFRAVNKPLDPGS 680 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~--~t~e--W~DGvls~i~R~~~~~~~~~~ 680 (741)
.|+|+||||+|||++.+.+++.+.. ..+. .....+...+.|.... .+++ +..|.+..+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r-----~~~~-~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A------------ 390 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPR-----AVYT-TGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA------------ 390 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSC-----EECC-CTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH------------
T ss_pred ceEEECCCchHHHHHHHHHHHhCCC-----ceec-CCCccccccccceeeeccccccccccCCeeEec------------
Confidence 7999999999999999998877532 1111 1112333444444321 2333 467766532
Q ss_pred CCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCC
Q psy17620 681 KERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPI 733 (741)
Q Consensus 681 ~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L 733 (741)
.+..+++| +.+++.-.+.|..+|++...-....|....++..+++|.-+...
T Consensus 391 -~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~ 444 (595)
T 3f9v_A 391 -DGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPK 444 (595)
T ss_dssp -SSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCT
T ss_pred -CCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCc
Confidence 23588999 56778888899999988766555678889999999999888754
No 25
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.61 E-value=0.0012 Score=61.58 Aligned_cols=76 Identities=11% Similarity=0.073 Sum_probs=46.7
Q ss_pred hhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCC
Q psy17620 600 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPG 679 (741)
Q Consensus 600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~ 679 (741)
.....+|+|+||||+|||++.+.++.... ....+|...++. ++..|+ +..+
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~~~------------~~~~~~----~~~a------- 74 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEYLI------------DMPMEL----LQKA------- 74 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTHHH------------HCHHHH----HHHT-------
T ss_pred hCCCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhCCh------------HhhhhH----HHhC-------
Confidence 45678999999999999999888766532 334444433321 112232 2222
Q ss_pred CCCCeEEEEc--CCCChhhhhhccccccC
Q psy17620 680 SKERKYILFD--GDVDALWIENMNSVMDD 706 (741)
Q Consensus 680 ~~~~~WIVfD--G~vd~~wiE~LNsvLDd 706 (741)
....+++| +.+++.-...|..+|++
T Consensus 75 --~~~~l~lDei~~l~~~~q~~Ll~~l~~ 101 (143)
T 3co5_A 75 --EGGVLYVGDIAQYSRNIQTGITFIIGK 101 (143)
T ss_dssp --TTSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred --CCCeEEEeChHHCCHHHHHHHHHHHHh
Confidence 22578899 55666666666666664
No 26
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.54 E-value=0.0025 Score=65.84 Aligned_cols=28 Identities=21% Similarity=0.504 Sum_probs=24.5
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...++++|+||||+|||++.+.+++.+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3467899999999999999999998863
No 27
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.51 E-value=0.0042 Score=60.72 Aligned_cols=28 Identities=21% Similarity=0.107 Sum_probs=24.6
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLG 631 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~ 631 (741)
.-|+|.|++||||||+.+.|++.+...|
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 4588999999999999999999987554
No 28
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.50 E-value=0.0071 Score=59.34 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=26.6
Q ss_pred HHHHHhhcc---ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 595 QMYETMLTR---HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 595 qL~e~l~~r---~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+|.+.+... +.++|+||+|+|||++.+.+++.+.
T Consensus 34 ~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 34 ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444444433 4799999999999999999998875
No 29
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.49 E-value=0.0014 Score=63.10 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=23.9
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+++|+||+|+||||+.+.++..+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999875
No 30
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=96.43 E-value=0.02 Score=64.11 Aligned_cols=133 Identities=17% Similarity=0.249 Sum_probs=86.5
Q ss_pred CcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccCCCCC-------CCCchHHHhh
Q psy17620 422 GAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAG-------RTELPESVKA 494 (741)
Q Consensus 422 GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNpgy~g-------r~eLP~nLk~ 494 (741)
|--+|+||||+++.++++++ ..++..+ ++.+.|. .++..|.+.+|+||-+.. ...||+.+-.
T Consensus 301 gGvl~lDEIn~~~~~~qsaL-------lEaMEe~--~VtI~G~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD 369 (506)
T 3f8t_A 301 GGILAVDHLEGAPEPHRWAL-------MEAMDKG--TVTVDGI--ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS 369 (506)
T ss_dssp TSEEEEECCTTCCHHHHHHH-------HHHHHHS--EEEETTE--EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT
T ss_pred CCeeehHhhhhCCHHHHHHH-------HHHHhCC--cEEECCE--EcCCCeEEEEEeCcccccCCCCCccccCCChHHhh
Confidence 45599999999999999887 4555444 4555576 889999999999995411 2389999999
Q ss_pred cceeee--ccCCC-------------HHHHHHHHHhhc----CccchHHHHHHHHHHHHHHHHHhhc-----CCccccch
Q psy17620 495 LFRPVV--CIVPD-------------FELICQIMLFSE----GFLEAKVLAKKMAVLYKLSKEQLSK-----QCHYDFGM 550 (741)
Q Consensus 495 lFRpva--m~~PD-------------~~~I~ei~L~s~----GF~~a~~La~Kl~~l~~l~~e~ls~-----q~hydfgL 550 (741)
.|--+. +..|| .+.+.+...++. .-.-...+...++.+|...+..-.. ...+-.+.
T Consensus 370 RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSp 449 (506)
T 3f8t_A 370 HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTR 449 (506)
T ss_dssp TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCH
T ss_pred heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccH
Confidence 994332 22333 344444444443 2233456677888888877652111 13344567
Q ss_pred hhHHHHHHHhhHhHh
Q psy17620 551 RALKSVLVMAGELKR 565 (741)
Q Consensus 551 RalksVL~~a~~l~~ 565 (741)
|++.++++.|....+
T Consensus 450 R~leaLiRlA~A~A~ 464 (506)
T 3f8t_A 450 RQLESVERLAKAHAR 464 (506)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998876544
No 31
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.38 E-value=0.071 Score=63.61 Aligned_cols=71 Identities=20% Similarity=0.397 Sum_probs=45.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE 682 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~ 682 (741)
..||+|+||||||||.+.+.++...+. ..+ +++..+|++.+--.+ .-.+..+|+.+... .
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~-----~f~-----~v~~~~l~s~~vGes----e~~vr~lF~~Ar~~------~ 570 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQA-----NFI-----SIKGPELLTMWFGES----EANVREIFDKARQA------A 570 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTC-----EEE-----ECCHHHHHTTTCSSC----HHHHHHHHHHHHTT------C
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCC-----ceE-----EeccchhhccccchH----HHHHHHHHHHHHHc------C
Confidence 468999999999999999999987642 222 234445554442211 22456666666432 4
Q ss_pred CeEEEEcCCCCh
Q psy17620 683 RKYILFDGDVDA 694 (741)
Q Consensus 683 ~~WIVfDG~vd~ 694 (741)
+..|+|| .+|+
T Consensus 571 P~IifiD-EiDs 581 (806)
T 3cf2_A 571 PCVLFFD-ELDS 581 (806)
T ss_dssp SEEEECS-CGGG
T ss_pred Cceeech-hhhH
Confidence 5788888 4444
No 32
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.35 E-value=0.0054 Score=63.79 Aligned_cols=26 Identities=23% Similarity=0.595 Sum_probs=23.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.++++|+||||+|||++.+.+++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 57999999999999999999998863
No 33
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.34 E-value=0.0048 Score=58.42 Aligned_cols=37 Identities=14% Similarity=0.413 Sum_probs=29.7
Q ss_pred HHHHHHHhhc--cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 593 VVQMYETMLT--RHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 593 v~qL~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
+.++.+.+.. .++++|+||||+|||++.+.+++.+..
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 5556666554 367999999999999999999998754
No 34
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.34 E-value=0.0079 Score=67.45 Aligned_cols=98 Identities=15% Similarity=0.308 Sum_probs=51.4
Q ss_pred HHHHHHHh--hccceEEEEecCCCChhHHHHHHHHHhccCCC-----CeEEEEeCCCccccccccccccCCCCCcccChH
Q psy17620 593 VVQMYETM--LTRHSTMIVGPTGGGKSVVINALVKTSTVLGY-----PARTYTLNPKAVSVIELYGVLNPETRDWYDGLL 665 (741)
Q Consensus 593 v~qL~e~l--~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~-----~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvl 665 (741)
+.++.+.+ ....+++|+||||+|||++.+.++..+..-+. ...++.++.. +.+ .+++.+ -+
T Consensus 189 i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--------~~~---~g~~e~-~~ 256 (468)
T 3pxg_A 189 IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------TKY---RGEFED-RL 256 (468)
T ss_dssp HHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------------CT-TH
T ss_pred HHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------ccc---cchHHH-HH
Confidence 55666666 34568999999999999999999998754221 1223333322 111 122322 34
Q ss_pred HHHHHHhcCCCCCCCCCCeEEEEcCCCChhhhhhccccccCCcee
Q psy17620 666 SNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKIL 710 (741)
Q Consensus 666 s~i~R~~~~~~~~~~~~~~WIVfDG~vd~~wiE~LNsvLDdnk~L 710 (741)
..++..+.. ..+..+++||..|+ ...|..+|+.+...
T Consensus 257 ~~~~~~~~~------~~~~iLfiD~~~~a--~~~L~~~L~~g~v~ 293 (468)
T 3pxg_A 257 KKVMDEIRQ------AGNIILFIDAAIDA--SNILKPSLARGELQ 293 (468)
T ss_dssp HHHHHHHHT------CCCCEEEECC----------CCCTTSSSCE
T ss_pred HHHHHHHHh------cCCeEEEEeCchhH--HHHHHHhhcCCCEE
Confidence 555555543 24578999976654 34456666655433
No 35
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.31 E-value=0.0036 Score=65.16 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=22.0
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.++++||+|+|||++.+.+++.+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 499999999999999999999864
No 36
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.30 E-value=0.00043 Score=74.79 Aligned_cols=97 Identities=10% Similarity=0.304 Sum_probs=56.9
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK 681 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~ 681 (741)
...+++|+||||+|||++.+.+++.+. ...+.++...+....++|.- ..|.+..+++....... ..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~-----~~~~~~~~~~l~~~~~~g~~-------~~~~~~~~~~~~~~~~~--~~ 115 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD-----VPFTMADATTLTEAGYVGED-------VENIIQKLLQKCDYDVQ--KA 115 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHTTCHHHHHH-------HTHHHHHHHHHTTTCHH--HH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC-----CCEEEechHHhccccccccc-------HHHHHHHHHHHhhhhHH--hc
Confidence 457899999999999999999999873 23445555444444455542 13456666654321100 11
Q ss_pred CCeEEEEcC--CCChh--------------hhhhccccccCCceeecc
Q psy17620 682 ERKYILFDG--DVDAL--------------WIENMNSVMDDNKILTLA 713 (741)
Q Consensus 682 ~~~WIVfDG--~vd~~--------------wiE~LNsvLDdnk~L~L~ 713 (741)
.+..+++|. .+.+. ....|..+|| +....++
T Consensus 116 ~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~le-g~~~~~~ 162 (363)
T 3hws_A 116 QRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIE-GTVAAVP 162 (363)
T ss_dssp HHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHH-CC-----
T ss_pred CCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhc-Cceeecc
Confidence 345899992 12222 6777788888 5555543
No 37
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.28 E-value=0.0025 Score=65.64 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=25.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYP 633 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~ 633 (741)
.-|+|+|+|||||||+.+.|++.+...|.+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~ 34 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNID 34 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCE
Confidence 458899999999999999999987666654
No 38
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.13 E-value=0.017 Score=59.08 Aligned_cols=26 Identities=27% Similarity=0.612 Sum_probs=23.6
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.+|++|+||||+|||++.+.+++.+.
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC
Confidence 56899999999999999999998864
No 39
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.10 E-value=0.01 Score=70.45 Aligned_cols=98 Identities=13% Similarity=0.301 Sum_probs=52.2
Q ss_pred HHHHHHHhhc--cceEEEEecCCCChhHHHHHHHHHhccCCC-----CeEEEEeCCCccccccccccccCCCCCcccChH
Q psy17620 593 VVQMYETMLT--RHSTMIVGPTGGGKSVVINALVKTSTVLGY-----PARTYTLNPKAVSVIELYGVLNPETRDWYDGLL 665 (741)
Q Consensus 593 v~qL~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~-----~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvl 665 (741)
+.++.+.+.. ..+++|+||||+|||++.+.|++.+..-+. ...++.++. ....- +++ .+-+
T Consensus 189 i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~----g~~~~-------G~~-e~~l 256 (758)
T 3pxi_A 189 IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM----GTKYR-------GEF-EDRL 256 (758)
T ss_dssp HHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------------CTTH
T ss_pred HHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc----ccccc-------chH-HHHH
Confidence 5567777744 458999999999999999999999744221 122333333 01111 222 2334
Q ss_pred HHHHHHhcCCCCCCCCCCeEEEEcCCCChhhhhhccccccCCcee
Q psy17620 666 SNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKIL 710 (741)
Q Consensus 666 s~i~R~~~~~~~~~~~~~~WIVfDG~vd~~wiE~LNsvLDdnk~L 710 (741)
..++..+.. ..+..+++||..|. ...|..+|+.+...
T Consensus 257 ~~~~~~~~~------~~~~iLfiD~~~~~--~~~L~~~l~~~~v~ 293 (758)
T 3pxi_A 257 KKVMDEIRQ------AGNIILFIDAAIDA--SNILKPSLARGELQ 293 (758)
T ss_dssp HHHHHHHHT------CCCCEEEECC----------CCCTTSSSCE
T ss_pred HHHHHHHHh------cCCEEEEEcCchhH--HHHHHHHHhcCCEE
Confidence 556665543 24578999976653 44555666654433
No 40
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.10 E-value=0.017 Score=66.00 Aligned_cols=124 Identities=14% Similarity=0.125 Sum_probs=59.6
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc-ccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV-SVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK 681 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~-t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~ 681 (741)
...++|+||||+|||++.+.++..+. .....++...+ ...+++|....- -....|-+...+.++..
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~~~~~~~~~g~~~~~-ig~~~~~~~~~~~~a~~------- 174 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGGVRDESEIRGHRRTY-VGAMPGRIIQGMKKAGK------- 174 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC---------------------CHHHHHHTTCS-------
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEecccchhhhhhhHHHHH-hccCchHHHHHHHHhhc-------
Confidence 44799999999999999999999874 23444544332 234555543211 11223444445554321
Q ss_pred CCeEEEEcC--CCChh----hhhhccccccCCceee-ccCCCeeecC-CCceEEEEeCCCCCCCCC
Q psy17620 682 ERKYILFDG--DVDAL----WIENMNSVMDDNKILT-LANGERIRLL-AHCQLLFEIHPIQSDSHP 739 (741)
Q Consensus 682 ~~~WIVfDG--~vd~~----wiE~LNsvLDdnk~L~-L~nGeri~l~-~~~rliFE~~~L~~aSPA 739 (741)
..-.+++|- .+.+. -.+.|-.+||+...-. ...+.....+ +++.+|.-+..+....||
T Consensus 175 ~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~a 240 (543)
T 3m6a_A 175 LNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGP 240 (543)
T ss_dssp SSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHH
T ss_pred cCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHH
Confidence 234788882 23333 2356667777532111 1122222222 567788777777666554
No 41
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.95 E-value=0.0073 Score=57.18 Aligned_cols=37 Identities=14% Similarity=0.379 Sum_probs=29.1
Q ss_pred HHHHHHHhhc--cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 593 VVQMYETMLT--RHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 593 v~qL~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
+.++.+.+.. .++++|+||||+|||++.+.+++.+..
T Consensus 31 ~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 31 IRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp HHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4455555544 568999999999999999999998754
No 42
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.91 E-value=0.014 Score=60.49 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=24.3
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
....-+.|+||+||||||+++.|+..+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 34456889999999999999999998754
No 43
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.90 E-value=0.0029 Score=64.18 Aligned_cols=99 Identities=22% Similarity=0.240 Sum_probs=53.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccc-c-CC-CCCcccChHHHHHHHhc--CCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVL-N-PE-TRDWYDGLLSNIFRAVN--KPLD 677 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~-d-~~-t~eW~DGvls~i~R~~~--~~~~ 677 (741)
..-|++.||+||||||+.+.|++.+.. |.++... -.|..-...+.+..+ . +. -..+...++-.+-|... ....
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~-~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~i~ 103 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT-REPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVI 103 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE-CTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCCCCH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee-cCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999976 6555332 234332222222221 1 10 01122222222223211 1000
Q ss_pred CCCCCCeEEEEc----------C---CCChhhhhhcccc
Q psy17620 678 PGSKERKYILFD----------G---DVDALWIENMNSV 703 (741)
Q Consensus 678 ~~~~~~~WIVfD----------G---~vd~~wiE~LNsv 703 (741)
......+|+|+| | .++..|++.|+..
T Consensus 104 ~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~ 142 (229)
T 4eaq_A 104 PALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEF 142 (229)
T ss_dssp HHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHH
T ss_pred HHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHH
Confidence 001245899999 7 4788888888764
No 44
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.87 E-value=0.0063 Score=65.28 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=23.2
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.++++|+||||+|||++.+.+++.+.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999998763
No 45
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.85 E-value=0.02 Score=61.29 Aligned_cols=95 Identities=14% Similarity=0.177 Sum_probs=51.6
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc-ccccccc-------ccccCCCCCcccChHHHHHHHhcCCC
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA-VSVIELY-------GVLNPETRDWYDGLLSNIFRAVNKPL 676 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka-~t~~eLy-------G~~d~~t~eW~DGvls~i~R~~~~~~ 676 (741)
.++|+||+|+|||++++.+++.+.... ...+..+|... .+..+++ |.-.+.+..-.+.++..+...+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~-- 122 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRE-- 122 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH--
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhh--
Confidence 799999999999999999998875431 23444555222 2222222 211111111111223332222211
Q ss_pred CCCCCCCeEEEEcC--CCChhhhhhcccccc
Q psy17620 677 DPGSKERKYILFDG--DVDALWIENMNSVMD 705 (741)
Q Consensus 677 ~~~~~~~~WIVfDG--~vd~~wiE~LNsvLD 705 (741)
...+..|++|. .+|+...+.|-.+++
T Consensus 123 ---~~~~~vlilDE~~~l~~~~~~~L~~~~~ 150 (389)
T 1fnn_A 123 ---RDLYMFLVLDDAFNLAPDILSTFIRLGQ 150 (389)
T ss_dssp ---TTCCEEEEEETGGGSCHHHHHHHHHHTT
T ss_pred ---cCCeEEEEEECccccchHHHHHHHHHHH
Confidence 12468999994 356777777766664
No 46
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.83 E-value=0.0035 Score=70.88 Aligned_cols=68 Identities=22% Similarity=0.402 Sum_probs=43.6
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK 681 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~ 681 (741)
..++|+|+||||+|||++.+.+++.++ ..+..+|...+. .+++|.. .|.+..++..+.. .
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~-----~~fv~vn~~~l~-~~~~g~~--------~~~~~~~f~~A~~------~ 296 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGPEIM-SKLAGES--------ESNLRKAFEEAEK------N 296 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCS-----SEEEEEEHHHHH-TSCTTHH--------HHHHHHHHHHHHH------T
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhC-----CCEEEEEchHhh-hhhcchh--------HHHHHHHHHHHHh------c
Confidence 457899999999999999999988752 345555544433 3344443 2334445554432 1
Q ss_pred CCeEEEEc
Q psy17620 682 ERKYILFD 689 (741)
Q Consensus 682 ~~~WIVfD 689 (741)
.+..|++|
T Consensus 297 ~p~iLfLD 304 (489)
T 3hu3_A 297 APAIIFID 304 (489)
T ss_dssp CSEEEEEE
T ss_pred CCcEEEec
Confidence 34688899
No 47
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.81 E-value=0.013 Score=69.80 Aligned_cols=26 Identities=23% Similarity=0.576 Sum_probs=23.1
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-.||+|+||||||||++.+.+++.++
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 35999999999999999999998753
No 48
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.80 E-value=0.0046 Score=58.71 Aligned_cols=26 Identities=31% Similarity=0.600 Sum_probs=23.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...|.|+||+||||||+.+.|++.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999999864
No 49
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.79 E-value=0.0058 Score=63.87 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=26.2
Q ss_pred HHHHHhhccc--eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 595 QMYETMLTRH--STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 595 qL~e~l~~r~--gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+|.+.+.... .++++||+|+|||++.+.+++.+.
T Consensus 36 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 36 RLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 4444444432 499999999999999999999864
No 50
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.79 E-value=0.0072 Score=58.02 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=26.2
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCeE
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPAR 635 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~ 635 (741)
-|+|.|+|||||||+.+.|++.+...|.++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 33 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNK 33 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEE
Confidence 4889999999999999999999876555443
No 51
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.01 Score=66.15 Aligned_cols=33 Identities=21% Similarity=0.491 Sum_probs=27.1
Q ss_pred HHHHhhc--cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 596 MYETMLT--RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 596 L~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+|+.+.. ..||+|+||||||||++.+++|..++
T Consensus 206 ~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 206 IFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp HHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred HHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4554433 56999999999999999999999874
No 52
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.76 E-value=0.011 Score=60.39 Aligned_cols=101 Identities=20% Similarity=0.268 Sum_probs=57.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccccccc-ccc--cCCCCCc---ccChHHHHHHHh--cC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELY-GVL--NPETRDW---YDGLLSNIFRAV--NK 674 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLy-G~~--d~~t~eW---~DGvls~i~R~~--~~ 674 (741)
..-|++.|++||||||..+.|++.+...|.++....=.|..-...+.+ +.+ ++...+| ...++-.+-|.. ..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~~~ 106 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVEN 106 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 346889999999999999999999988887733344467544333332 222 2222223 222222222211 00
Q ss_pred CCCCCCCCCeEEEEc----------C---CCChhhhhhcccc
Q psy17620 675 PLDPGSKERKYILFD----------G---DVDALWIENMNSV 703 (741)
Q Consensus 675 ~~~~~~~~~~WIVfD----------G---~vd~~wiE~LNsv 703 (741)
.....-...+|+|+| | .+|..|++.+|..
T Consensus 107 ~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~ 148 (236)
T 3lv8_A 107 VIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQT 148 (236)
T ss_dssp THHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHH
Confidence 000001245899999 2 4678899888864
No 53
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.72 E-value=0.013 Score=59.68 Aligned_cols=38 Identities=21% Similarity=0.471 Sum_probs=28.9
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV 644 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~ 644 (741)
..++++|+||||+|||++.+.+++.+. . ....++...+
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~~---~--~~~~i~~~~~ 81 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK---V--PFFTISGSDF 81 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT---C--CEEEECSCSS
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcC---C--CEEEEeHHHH
Confidence 356899999999999999999998763 2 2455555443
No 54
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.68 E-value=0.0052 Score=60.60 Aligned_cols=27 Identities=26% Similarity=0.605 Sum_probs=22.5
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||+++.|.+.+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 345789999999999999999998763
No 55
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.67 E-value=0.013 Score=57.96 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=27.2
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPA 634 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~ 634 (741)
..++++|+||||+|||++.+.+++.+..-+.++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~ 83 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRS 83 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 367999999999999999999999876544443
No 56
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.66 E-value=0.026 Score=61.26 Aligned_cols=116 Identities=18% Similarity=0.297 Sum_probs=83.3
Q ss_pred HHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCC-C--CCcccChHHHHHH
Q psy17620 598 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPE-T--RDWYDGLLSNIFR 670 (741)
Q Consensus 598 e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~-t--~eW~DGvls~i~R 670 (741)
........|++.|++|+||+.+.+.+.....+-+ ....+|..+++. .+|||+-... | ..++.|.|..+
T Consensus 147 ~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~---~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a-- 221 (368)
T 3dzd_A 147 KIAKSKAPVLITGESGTGKEIVARLIHRYSGRKG---AFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELA-- 221 (368)
T ss_dssp HHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCS---CEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHT--
T ss_pred hhhccchhheEEeCCCchHHHHHHHHHHhccccC---CcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhc--
Confidence 3445677899999999999999999988764432 266777777654 6789875321 1 24677877531
Q ss_pred HhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620 671 AVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH 731 (741)
Q Consensus 671 ~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~ 731 (741)
.+--+++| |.+++..-..|-.+|+++..-.+.+... .+-++|+|+-|+
T Consensus 222 -----------~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~--~~~~~rii~at~ 271 (368)
T 3dzd_A 222 -----------DQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQK--IEVDIRVISATN 271 (368)
T ss_dssp -----------TTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCB--EECCCEEEEEES
T ss_pred -----------CCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcc--eeeeeEEEEecC
Confidence 12359999 8889999999999999887666655544 455799999876
No 57
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.66 E-value=0.015 Score=56.78 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=26.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPA 634 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~ 634 (741)
.+++|+||||+|||++.+.++..+...+.++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~ 85 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS 85 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 7899999999999999999999876544443
No 58
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.60 E-value=0.011 Score=61.51 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=21.5
Q ss_pred EEEEecCCCChhHHHHHHHHHhc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
++++||+|+|||++.+.+++.+.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhc
Confidence 99999999999999999998864
No 59
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.59 E-value=0.0088 Score=57.79 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=26.0
Q ss_pred HHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 598 ETMLTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 598 e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+.|....-|+|+|++||||||+.+.|++.++
T Consensus 4 ~~m~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 4 EKLKKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp HHHTTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred hcCcCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455556799999999999999999998874
No 60
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.01 Score=65.36 Aligned_cols=34 Identities=21% Similarity=0.560 Sum_probs=27.7
Q ss_pred HHHHHhhc--cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 595 QMYETMLT--RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 595 qL~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
++|+.+.. ..||+|+||||||||++.+++|...+
T Consensus 172 e~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 172 ELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp HHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 34555444 46999999999999999999999874
No 61
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.57 E-value=0.021 Score=62.14 Aligned_cols=90 Identities=19% Similarity=0.227 Sum_probs=47.3
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccC-CCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCC
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVL-GYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGS 680 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~-~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~ 680 (741)
....+.|+||+||||||+++.|+..+... ...+.+. =+|-......-.|.+....-.-....|+..++.+-.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~-e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~------ 207 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI-EDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR------ 207 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEE-ESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTT------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEe-cccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhh------
Confidence 34568899999999999999999987643 1222111 122211111111111100000011234555555432
Q ss_pred CCCeEEEEcCCCChhhhh
Q psy17620 681 KERKYILFDGDVDALWIE 698 (741)
Q Consensus 681 ~~~~WIVfDG~vd~~wiE 698 (741)
..+..|++|-|-|++-++
T Consensus 208 ~~pd~illdE~~d~e~~~ 225 (372)
T 2ewv_A 208 EDPDVIFVGEMRDLETVE 225 (372)
T ss_dssp SCCSEEEESCCCSHHHHH
T ss_pred hCcCEEEECCCCCHHHHH
Confidence 145799999998886443
No 62
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.56 E-value=0.0062 Score=58.90 Aligned_cols=26 Identities=23% Similarity=0.530 Sum_probs=22.6
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..-++|+|||||||||+++.|++.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34688999999999999999998753
No 63
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.56 E-value=0.0062 Score=57.45 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=21.8
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-|+|.|++||||||+.+.|++.++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998864
No 64
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.0079 Score=66.80 Aligned_cols=27 Identities=22% Similarity=0.634 Sum_probs=24.5
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...||+|+||||||||++.+++|..++
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467999999999999999999999874
No 65
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.52 E-value=0.015 Score=61.96 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=31.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccC----CCCeEEEEeCCCc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVL----GYPARTYTLNPKA 643 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~----~~~~~~~~inpka 643 (741)
..++++|+||||+|||++.+.+++.+... +....+..+|...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 35689999999999999999999887432 2245566666443
No 66
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.51 E-value=0.013 Score=59.48 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=23.8
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...|++|+||||||||++.+.+++.+.
T Consensus 48 ~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 48 IPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998763
No 67
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.48 E-value=0.0064 Score=58.01 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-|+|+|+|||||||+.+.|++.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999999864
No 68
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.46 E-value=0.014 Score=60.52 Aligned_cols=39 Identities=26% Similarity=0.453 Sum_probs=29.6
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS 645 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t 645 (741)
..++++++||||+|||++.+.+++.+. .....++...+.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~-----~~~~~i~~~~~~ 87 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFT 87 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT-----CCEEEEEGGGGS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEcchhcc
Confidence 357899999999999999999999873 234455544443
No 69
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.44 E-value=0.011 Score=56.77 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=24.9
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGY 632 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~ 632 (741)
.-|+|.|+|||||||+.+.|++.++..|.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~ 32 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGV 32 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence 46899999999999999999998875443
No 70
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.0089 Score=66.48 Aligned_cols=27 Identities=22% Similarity=0.523 Sum_probs=24.4
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...||+|+||||||||++.+++|...+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 357999999999999999999999874
No 71
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.42 E-value=0.0065 Score=63.26 Aligned_cols=27 Identities=30% Similarity=0.578 Sum_probs=24.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...|++|+||||||||++.++++..+.
T Consensus 43 ~~~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 43 TPAGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 467899999999999999999998753
No 72
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.40 E-value=0.014 Score=61.20 Aligned_cols=27 Identities=22% Similarity=0.538 Sum_probs=24.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..++|+|+||||||||++.+.+++.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 357899999999999999999998763
No 73
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.37 E-value=0.012 Score=58.30 Aligned_cols=40 Identities=28% Similarity=0.445 Sum_probs=29.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK 642 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk 642 (741)
..-|.|+||+||||||+.+.|+..+...|...-...++..
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 4467899999999999999999998643333344444443
No 74
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.35 E-value=0.013 Score=59.42 Aligned_cols=27 Identities=22% Similarity=0.585 Sum_probs=24.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+++|+||||+|||++.+.+++.+.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998763
No 75
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.33 E-value=0.025 Score=61.47 Aligned_cols=67 Identities=21% Similarity=0.408 Sum_probs=41.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE 682 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~ 682 (741)
.++|+|+||||+|||++.+.++..+. ..++.+++.. +.|.+-.. ..+.+..++..+.. ..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~-----~~~~~v~~~~-----l~~~~~g~----~~~~~~~~~~~a~~------~~ 207 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESN-----ATFFNISAAS-----LTSKYVGE----GEKLVRALFAVARE------LQ 207 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTT-----CEEEEECSCC-----C-----------CHHHHHHHHHHHHH------SS
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc-----CcEEEeeHHH-----hhccccch----HHHHHHHHHHHHHh------cC
Confidence 47999999999999999999988753 3566666643 33332111 12334455554432 13
Q ss_pred CeEEEEc
Q psy17620 683 RKYILFD 689 (741)
Q Consensus 683 ~~WIVfD 689 (741)
...|++|
T Consensus 208 ~~il~iD 214 (389)
T 3vfd_A 208 PSIIFID 214 (389)
T ss_dssp SEEEEEE
T ss_pred CeEEEEE
Confidence 4689999
No 76
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.31 E-value=0.008 Score=58.61 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=22.6
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
...-+.|+||+||||||+.+.|++.+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568899999999999999999875
No 77
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.29 E-value=0.011 Score=57.50 Aligned_cols=25 Identities=32% Similarity=0.601 Sum_probs=22.1
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+.|+||+||||||+++.|++.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3578999999999999999998764
No 78
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.25 E-value=0.037 Score=60.40 Aligned_cols=117 Identities=21% Similarity=0.281 Sum_probs=81.3
Q ss_pred HHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccc----ccccccccCC-C--CCcccChHHHHHH
Q psy17620 598 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPE-T--RDWYDGLLSNIFR 670 (741)
Q Consensus 598 e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~----~eLyG~~d~~-t--~eW~DGvls~i~R 670 (741)
.......+|++.|++|+||+++.+.+......-+. ....+|..+++. .+|||+-..+ | ..++.|.|..+
T Consensus 155 ~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~--~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a-- 230 (387)
T 1ny5_A 155 KISCAECPVLITGESGVGKEVVARLIHKLSDRSKE--PFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELA-- 230 (387)
T ss_dssp HHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTS--CEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHT--
T ss_pred HhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCC--CeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeC--
Confidence 34456779999999999999999998877543322 345667666653 6889974221 1 13567766541
Q ss_pred HhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeC
Q psy17620 671 AVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIH 731 (741)
Q Consensus 671 ~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~ 731 (741)
.+-.++|| |.+++..-..|-.+|++.+.-.+ |..-..+.++|+|+-|.
T Consensus 231 -----------~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~--g~~~~~~~~~rii~at~ 280 (387)
T 1ny5_A 231 -----------DGGTLFLDEIGELSLEAQAKLLRVIESGKFYRL--GGRKEIEVNVRILAATN 280 (387)
T ss_dssp -----------TTSEEEEESGGGCCHHHHHHHHHHHHHSEECCB--TCCSBEECCCEEEEEES
T ss_pred -----------CCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeC--CCCceeeccEEEEEeCC
Confidence 23589999 78899888889999988765444 44445566899998775
No 79
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.25 E-value=0.0074 Score=58.25 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.1
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
...+.|+||+||||||+.+.|++.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 345889999999999999999875
No 80
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.24 E-value=0.041 Score=61.19 Aligned_cols=68 Identities=21% Similarity=0.415 Sum_probs=40.2
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE 682 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~~ 682 (741)
.++|+|+||||+|||++.+.++..+. ...+..+++.. +.+.+-.. ....+..++..+.. ..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~----~~~~~~v~~~~-----l~~~~~g~----~~~~~~~~f~~a~~------~~ 227 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSSD-----LVSKWLGE----SEKLVKNLFQLARE------NK 227 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCC----SSEEEEECCC------------------CCCTHHHHHHHHHH------SC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC----CCCEEEEeHHH-----HHhhhcch----HHHHHHHHHHHHHH------cC
Confidence 47999999999999999999998862 12445555433 33222111 12344555554432 24
Q ss_pred CeEEEEc
Q psy17620 683 RKYILFD 689 (741)
Q Consensus 683 ~~WIVfD 689 (741)
+..|++|
T Consensus 228 ~~vl~iD 234 (444)
T 2zan_A 228 PSIIFID 234 (444)
T ss_dssp SEEEEES
T ss_pred CeEEEEe
Confidence 5789999
No 81
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.23 E-value=0.017 Score=64.07 Aligned_cols=33 Identities=24% Similarity=0.538 Sum_probs=26.9
Q ss_pred HHHHhhc--cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 596 MYETMLT--RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 596 L~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+|+.+.. ..||+|+||||||||++.+++|...+
T Consensus 207 ~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 207 LYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp HHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred HHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 4444433 57999999999999999999999874
No 82
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.22 E-value=0.024 Score=65.51 Aligned_cols=87 Identities=18% Similarity=0.268 Sum_probs=59.1
Q ss_pred cCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccCCCCCCC----------CchH
Q psy17620 421 CGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRT----------ELPE 490 (741)
Q Consensus 421 ~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNpgy~gr~----------eLP~ 490 (741)
.|..+|+|||++++.++.+.+ ..++..+.-.+.-.|....++..+.+++|+||.+ |+- .||+
T Consensus 391 ~~gil~IDEid~l~~~~q~~L-------l~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~-G~~~~~~~~~~ni~l~~ 462 (595)
T 3f9v_A 391 DGGIAVIDEIDKMRDEDRVAI-------HEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKF-GRYISERPVSDNINLPP 462 (595)
T ss_dssp SSSEECCTTTTCCCSHHHHHH-------HHHHHSSSEEEESSSSEEEECCCCEEEEEECCTT-CCSCTTSCSCTTTCSCS
T ss_pred CCCcEEeehhhhCCHhHhhhh-------HHHHhCCEEEEecCCcEEEecCceEEEEEcCCcC-CccCcccCchhccCCCH
Confidence 467899999999999887765 3444433333333488888999999999999953 333 8999
Q ss_pred HHhhcce--eeeccCCCHH--HHHHHHHh
Q psy17620 491 SVKALFR--PVVCIVPDFE--LICQIMLF 515 (741)
Q Consensus 491 nLk~lFR--pvam~~PD~~--~I~ei~L~ 515 (741)
.|...|- -+....||.+ .|++..+.
T Consensus 463 aLl~RFDl~~~~~~~~~~e~~~i~~~il~ 491 (595)
T 3f9v_A 463 TILSRFDLIFILKDQPGEQDRELANYILD 491 (595)
T ss_dssp SSGGGCSCCEEECCTTHHHHHHHHHHHHT
T ss_pred HHHhhCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 9999883 3334445433 34444443
No 83
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.21 E-value=0.01 Score=58.11 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=23.8
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....|+|+|||||||||+.+.|++.++
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 445799999999999999999998873
No 84
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.19 E-value=0.014 Score=56.29 Aligned_cols=30 Identities=27% Similarity=0.247 Sum_probs=25.6
Q ss_pred EEEEecCCCChhHHHHHHHHHhccCCCCeE
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVLGYPAR 635 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~ 635 (741)
|.|.|++||||||+.+.|++.+...|.++.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 789999999999999999999876666654
No 85
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.18 E-value=0.021 Score=55.56 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=32.1
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 643 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka 643 (741)
...++++|++||||||+++.|...+...|.++-.....|..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 35688999999999999999999887666666666655544
No 86
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.18 E-value=0.043 Score=58.40 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=24.1
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
.|.++++||+|+|||++.+.+++.+..
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999998753
No 87
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.16 E-value=0.0099 Score=57.87 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=21.7
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-+.|+||+||||||+++.+++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 368999999999999999999874
No 88
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.14 E-value=0.023 Score=61.15 Aligned_cols=26 Identities=23% Similarity=0.556 Sum_probs=23.7
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
..++|+|+||||+|||++.+.+++.+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 36799999999999999999999876
No 89
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.13 E-value=0.011 Score=56.67 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.1
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...|+|+|+|||||||+.+.|++.++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998874
No 90
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.12 E-value=0.01 Score=57.10 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=22.9
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..-|+|+|+|||||||+.+.|++.++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34689999999999999999998873
No 91
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.12 E-value=0.097 Score=62.68 Aligned_cols=87 Identities=23% Similarity=0.234 Sum_probs=50.0
Q ss_pred HHHHHHHHHhh-hcCcceeecccccCCh-------hhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccC
Q psy17620 409 LAFGKILSGLS-QCGAWGCFDEFNRIDV-------SVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNP 480 (741)
Q Consensus 409 ~~~~ri~~Gla-q~GaW~cfDEfnrl~~-------~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNp 480 (741)
..++.+|..+. +..+...+||++.+.. ++...+..++......+ . -...+.+..|.|+
T Consensus 284 ~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~---~-----------~~~~v~vI~atn~ 349 (806)
T 1ypw_A 284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL---K-----------QRAHVIVMAATNR 349 (806)
T ss_dssp HHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSS---C-----------TTSCCEEEEECSC
T ss_pred HHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhh---c-----------ccccEEEecccCC
Confidence 44566666543 3467899999976643 23333333332222111 1 1245666777776
Q ss_pred CCCCCCCchHHHhh--cc-eeeeccCCCHHHHHHHH
Q psy17620 481 GYAGRTELPESVKA--LF-RPVVCIVPDFELICQIM 513 (741)
Q Consensus 481 gy~gr~eLP~nLk~--lF-Rpvam~~PD~~~I~ei~ 513 (741)
. ..|++.++. .| +.+.+..|+.+.-.+++
T Consensus 350 ~----~~ld~al~r~gRf~~~i~i~~p~~~~r~~il 381 (806)
T 1ypw_A 350 P----NSIDPALRRFGRFDREVDIGIPDATGRLEIL 381 (806)
T ss_dssp T----TTSCTTTTSTTSSCEEECCCCCCHHHHHHHH
T ss_pred c----hhcCHHHhcccccccccccCCCCHHHHHHHH
Confidence 3 356666665 45 56788899988766665
No 92
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.11 E-value=0.036 Score=63.82 Aligned_cols=93 Identities=15% Similarity=0.203 Sum_probs=56.9
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC------------CccccccccccccCCCCCcccChHHHHH
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP------------KAVSVIELYGVLNPETRDWYDGLLSNIF 669 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp------------ka~t~~eLyG~~d~~t~eW~DGvls~i~ 669 (741)
.+..++|.||||||||++++.+...+...|.++....-.. .+.|...++|.. + + .+.
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~-~-~-~~~-------- 271 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYG-P-Q-GFR-------- 271 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEE-T-T-EES--------
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCC-c-c-hhh--------
Confidence 4678899999999999999999998877665554332222 122333333332 1 1 111
Q ss_pred HHhcCCCCCCCCCCeEEEEc--CCCChhhhhhccccccCCcee
Q psy17620 670 RAVNKPLDPGSKERKYILFD--GDVDALWIENMNSVMDDNKIL 710 (741)
Q Consensus 670 R~~~~~~~~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L 710 (741)
.. .........||.| +.+|..+.+.|-+.+.++..+
T Consensus 272 ----~~-~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~~~~~l 309 (574)
T 3e1s_A 272 ----HN-HLEPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARV 309 (574)
T ss_dssp ----CS-SSSCCSCSEEEECCGGGCCHHHHHHHHTTSCTTCEE
T ss_pred ----hh-hcccccCCEEEEcCccCCCHHHHHHHHHhCcCCCEE
Confidence 00 0112345799999 788998888876666544333
No 93
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.09 E-value=0.011 Score=58.13 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=23.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
..-|.|+||+||||||+.+.|++.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~ 51 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQ 51 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 446889999999999999999998863
No 94
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.07 E-value=0.01 Score=55.56 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=19.8
Q ss_pred ceEEEEecCCCChhHHHHHHHHHh
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.-|+|+|||||||||+.+.| +.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 35889999999999999999 544
No 95
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.06 E-value=0.021 Score=55.43 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=31.8
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 643 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka 643 (741)
..+.++|++||||||++..|+..+...|.++-+....|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~ 44 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 44 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCC
Confidence 4688999999999999999999988777776666655543
No 96
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.05 E-value=0.0093 Score=58.72 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=23.2
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...-++|+|||||||||+.+.|++.+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 344789999999999999999998763
No 97
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.05 E-value=0.01 Score=56.32 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.2
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVK 625 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~ 625 (741)
.-|+|+|+|||||||+.+.|++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3588999999999999999998
No 98
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.02 E-value=0.012 Score=56.38 Aligned_cols=26 Identities=23% Similarity=0.494 Sum_probs=22.6
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..-|+|+|++||||||+.+.|++.++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999998763
No 99
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.00 E-value=0.042 Score=58.32 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.| ++++||+|+||||+.+.+++.+
T Consensus 37 ~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 37 PH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHHHHH
Confidence 45 9999999999999999999965
No 100
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.00 E-value=0.012 Score=59.59 Aligned_cols=33 Identities=24% Similarity=0.568 Sum_probs=22.9
Q ss_pred HHHHhhcc-ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 596 MYETMLTR-HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 596 L~e~l~~r-~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.++.|..+ .-+.|+||+||||||+.+.|++.++
T Consensus 19 ~~~~~~~~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 19 YFQSMASKLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp -------CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred HHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34444444 4688999999999999999998764
No 101
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.99 E-value=0.028 Score=62.79 Aligned_cols=25 Identities=28% Similarity=0.650 Sum_probs=22.9
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
++++|+||||+|||++.+.+++.+.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC
Confidence 5799999999999999999999863
No 102
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.99 E-value=0.012 Score=58.42 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.3
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
..-|.|+||+||||||+.+.|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999876
No 103
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.98 E-value=0.02 Score=56.12 Aligned_cols=31 Identities=26% Similarity=0.252 Sum_probs=27.0
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPA 634 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~ 634 (741)
.-|+|+|++||||||+.+.|++.+...+.++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 4589999999999999999999987666665
No 104
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.98 E-value=0.02 Score=61.02 Aligned_cols=43 Identities=7% Similarity=0.043 Sum_probs=31.9
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCC----C-CeEEEEeCCCccc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLG----Y-PARTYTLNPKAVS 645 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~----~-~~~~~~inpka~t 645 (741)
..+++|+||||+|||++++.+++.+.... . .+.+..+|-..++
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 45799999999999999999999885431 1 3566677754433
No 105
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.97 E-value=0.012 Score=57.71 Aligned_cols=24 Identities=17% Similarity=0.544 Sum_probs=22.0
Q ss_pred ceEEEEecCCCChhHHHHHHHHHh
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.-+.|+||+||||||+.+.|++.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999887
No 106
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.97 E-value=0.011 Score=58.15 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=21.6
Q ss_pred ceEEEEecCCCChhHHHHHHHHHh
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
+.|+|+||||+||||+.+.|.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998765
No 107
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.95 E-value=0.012 Score=57.49 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=22.1
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-|+|+|++||||||+.+.|++.++
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999873
No 108
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.92 E-value=0.023 Score=63.34 Aligned_cols=30 Identities=23% Similarity=0.490 Sum_probs=26.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGY 632 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~ 632 (741)
+..++|.|+||||||+++..+++.+...+.
T Consensus 45 ~~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 45 KHHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 348999999999999999999999876654
No 109
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.89 E-value=0.013 Score=58.99 Aligned_cols=29 Identities=38% Similarity=0.584 Sum_probs=23.7
Q ss_pred hhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 600 MLTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
|.....+.|+||+||||||+++.|.+...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 44455789999999999999999998764
No 110
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.87 E-value=0.012 Score=58.24 Aligned_cols=26 Identities=31% Similarity=0.472 Sum_probs=22.6
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..-++|+||+||||||+.+.|++.+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999998764
No 111
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.86 E-value=0.012 Score=57.23 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
..-+.|+||+||||||+.+.|++.+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3458899999999999999999876
No 112
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.84 E-value=0.014 Score=55.57 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.8
Q ss_pred ceEEEEecCCCChhHHHHHHHHHh
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
..+.|+||+||||||+.+.|++.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999876
No 113
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.84 E-value=0.013 Score=56.05 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...|+|+|+|||||||+.+.|++.++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 34699999999999999999998874
No 114
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.83 E-value=0.014 Score=55.67 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=22.0
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.|+|+|+|||||||+.+.|++.++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999999874
No 115
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.83 E-value=0.022 Score=54.67 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=26.3
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPART 636 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~ 636 (741)
-|.|.|++||||||+.+.|++.+...|.++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 37899999999999999999988655655443
No 116
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.83 E-value=0.024 Score=60.24 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=23.2
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.++|+|+||||+|||++.+.+++.+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 4799999999999999999999876
No 117
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.82 E-value=0.012 Score=60.75 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=23.8
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...|++|+|||||||||+.+.++..+.
T Consensus 72 ~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 72 IPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 356899999999999999999998763
No 118
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.82 E-value=0.024 Score=60.09 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=23.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.++++|+||||+|||++.+.+++.+.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 46899999999999999999998863
No 119
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.82 E-value=0.014 Score=57.60 Aligned_cols=28 Identities=25% Similarity=0.410 Sum_probs=23.5
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.....+.|+||+||||||++++|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3455688999999999999999998863
No 120
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.80 E-value=0.021 Score=55.10 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=26.1
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPA 634 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~ 634 (741)
.-|+|+|++||||||+.+.|++.+...|.++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 4588999999999999999999987655444
No 121
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.79 E-value=0.023 Score=53.48 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=25.5
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLG 631 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~ 631 (741)
....+.|+||+|+|||++.+.++..+..-|
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g 64 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG 64 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 456899999999999999999999875433
No 122
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.016 Score=64.67 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=24.6
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...||+|+||||||||++.+++|..++
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 467999999999999999999998874
No 123
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.77 E-value=0.023 Score=55.54 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=27.3
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeE
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPAR 635 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~ 635 (741)
..-|+|.|++||||||+.+.|++.++..+..+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 346899999999999999999998876555553
No 124
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.76 E-value=0.014 Score=56.50 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.3
Q ss_pred eEEEEecCCCChhHHHHHHHHHh
Q psy17620 605 STMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.+.|+||+||||||+.+.|++..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 47899999999999999998743
No 125
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.73 E-value=0.04 Score=58.97 Aligned_cols=29 Identities=21% Similarity=0.450 Sum_probs=25.0
Q ss_pred hhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 600 MLTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+.....+.|+||+||||||+++.|+..+.
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34577899999999999999999988764
No 126
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.71 E-value=0.023 Score=61.23 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=23.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.++|+|+||||+|||++.+.+++.+.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC
Confidence 56899999999999999999999873
No 127
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.71 E-value=0.028 Score=59.17 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=26.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP 641 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp 641 (741)
.|.+++.||||+|||++.+.+++.+. ..+..+|+
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~ 81 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNG 81 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEET
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEcc
Confidence 35778888899999999999998863 45555664
No 128
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.70 E-value=0.016 Score=56.20 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.9
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-|.|+|++||||||+.+.|++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 478999999999999999999875
No 129
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.70 E-value=0.061 Score=57.29 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=25.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
..|+++++||+|+|||++.+.+++++..
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 3678999999999999999999998753
No 130
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.68 E-value=0.016 Score=60.24 Aligned_cols=25 Identities=40% Similarity=0.686 Sum_probs=22.3
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-.++|+||+|+||||++++|.....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3689999999999999999998764
No 131
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.67 E-value=0.017 Score=56.76 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.8
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-|.|+||+||||||+.+.|++.+.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 477999999999999999999874
No 132
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.66 E-value=0.015 Score=58.15 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=22.8
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
....+.|+||+||||||+++.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34568899999999999999999875
No 133
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.65 E-value=0.021 Score=55.28 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=24.6
Q ss_pred hhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 600 MLTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+....-|+|+|+|||||||+.+.|++.++
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34455799999999999999999999874
No 134
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.53 E-value=0.018 Score=54.38 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=22.0
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-|+|.|++||||||+.+.|++.++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999864
No 135
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.52 E-value=0.018 Score=56.79 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=21.1
Q ss_pred EEEEecCCCChhHHHHHHHHHhc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
|+|.|||||||||+.+.|++.++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999988763
No 136
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.51 E-value=0.019 Score=55.17 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=22.3
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-|+|+|+|||||||+.+.|++.++
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999998764
No 137
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.45 E-value=0.02 Score=56.98 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-|+|+|||||||||+.+.|++.++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999874
No 138
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.43 E-value=0.026 Score=60.24 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=23.0
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+.++|+||||+||||+.+++++.++
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 5699999999999999999999874
No 139
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.41 E-value=0.021 Score=54.67 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.9
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-|+|+|++||||||+.+.|++.++
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998864
No 140
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.38 E-value=0.021 Score=54.83 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.8
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.|+|+|+|||||||+-+.|++.++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999864
No 141
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.38 E-value=0.021 Score=56.82 Aligned_cols=26 Identities=31% Similarity=0.620 Sum_probs=22.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...++|+||+|+||||+++.|.+...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45788999999999999999998753
No 142
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.37 E-value=0.16 Score=60.01 Aligned_cols=37 Identities=16% Similarity=0.360 Sum_probs=29.6
Q ss_pred HHHHHHHhhc--cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 593 VVQMYETMLT--RHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 593 v~qL~e~l~~--r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
+.++.+.+.. ..+++|+||||+|||++.+.++..+..
T Consensus 195 i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 195 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5556666544 457999999999999999999998754
No 143
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.31 E-value=0.02 Score=56.58 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.8
Q ss_pred EEEEecCCCChhHHHHHHHHHhc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
|+|.|||||||||+.+.|++.++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999988763
No 144
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.30 E-value=0.02 Score=55.46 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=27.9
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK 642 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk 642 (741)
..+.|+|++||||||+++.|...+...|.+.-...+++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 357899999999999999999998765444434444443
No 145
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.30 E-value=0.024 Score=53.64 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.6
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+.|.|.|++||||||+-+.|++.++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999999864
No 146
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.29 E-value=0.011 Score=58.07 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=23.6
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLG 631 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~ 631 (741)
-|.|+|++||||||+.+.|++.+...|
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g 28 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAG 28 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 478999999999999999999986544
No 147
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.26 E-value=0.018 Score=55.02 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=18.2
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-|+|.|++||||||+.+.|++.++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4688999999999999999998764
No 148
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.26 E-value=0.1 Score=62.84 Aligned_cols=52 Identities=17% Similarity=0.362 Sum_probs=34.9
Q ss_pred HHHHHHHhhcc--ceEEEEecCCCChhHHHHHHHHHhccCC-----CCeEEEEeCCCcc
Q psy17620 593 VVQMYETMLTR--HSTMIVGPTGGGKSVVINALVKTSTVLG-----YPARTYTLNPKAV 644 (741)
Q Consensus 593 v~qL~e~l~~r--~gv~lvGp~gsGKTt~~~~L~~a~~~~~-----~~~~~~~inpka~ 644 (741)
+.++.+.+..+ ++++|+||||+|||++.+.++..+..-. ....+..++..++
T Consensus 179 i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l 237 (854)
T 1qvr_A 179 IRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSL 237 (854)
T ss_dssp HHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHh
Confidence 55666666543 4799999999999999999999874321 1345556665444
No 149
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.25 E-value=0.023 Score=53.44 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.8
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-|+|.|++||||||+.+.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999864
No 150
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.24 E-value=0.023 Score=55.52 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=21.8
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-|+|+|+|||||||+.+.|++.++
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998864
No 151
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.23 E-value=0.022 Score=56.95 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.3
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-|+|+|+|||||||+.+.|++.++
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998763
No 152
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.20 E-value=0.037 Score=52.91 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=24.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYP 633 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~ 633 (741)
.-|.|+|++||||||+.+.|++.+...|.+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~ 35 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIP 35 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCc
Confidence 457899999999999999999987544444
No 153
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.18 E-value=0.024 Score=58.20 Aligned_cols=85 Identities=15% Similarity=0.268 Sum_probs=50.7
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccccCCCCCcccChHHHHHHHhcCCCCCCCC
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK 681 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGvls~i~R~~~~~~~~~~~ 681 (741)
..++++|+||||+|||++.+.+++... .+ ...++. .++++|.... -..+.+..++..+.. .
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~---~~--~~~i~~----~~~~~g~~~~----~~~~~~~~~~~~~~~------~ 123 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESN---FP--FIKICS----PDKMIGFSET----AKCQAMKKIFDDAYK------S 123 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT---CS--EEEEEC----GGGCTTCCHH----HHHHHHHHHHHHHHT------S
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhC---CC--EEEEeC----HHHhcCCchH----HHHHHHHHHHHHHHh------c
Confidence 457899999999999999999999853 23 233332 1355654211 111233444544422 2
Q ss_pred CCeEEEEcCC------------CChhhhhhcccccc
Q psy17620 682 ERKYILFDGD------------VDALWIENMNSVMD 705 (741)
Q Consensus 682 ~~~WIVfDG~------------vd~~wiE~LNsvLD 705 (741)
....|++|.- ....+.+.|...++
T Consensus 124 ~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~ 159 (272)
T 1d2n_A 124 QLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLK 159 (272)
T ss_dssp SEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTT
T ss_pred CCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhc
Confidence 4579999931 23456666666665
No 154
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.16 E-value=0.037 Score=54.36 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=26.9
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEE
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTY 637 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~ 637 (741)
.-|.|+|++||||||+.+.|+..+...+.++...
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 3588999999999999999999876555554443
No 155
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.14 E-value=0.024 Score=56.27 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.3
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-|+|+|+|||||||+.+.|++.++
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3588999999999999999999874
No 156
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.14 E-value=0.021 Score=54.77 Aligned_cols=19 Identities=26% Similarity=0.569 Sum_probs=17.0
Q ss_pred ceEEEEecCCCChhHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINA 622 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~ 622 (741)
.-+.|+||+||||||+.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4578999999999999994
No 157
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.08 E-value=0.034 Score=58.71 Aligned_cols=51 Identities=27% Similarity=0.312 Sum_probs=34.1
Q ss_pred HHHHHHHhhcc--ceEEEEecCCCChhHHHHHHHHHhccC-CCCeEEEEeCCCc
Q psy17620 593 VVQMYETMLTR--HSTMIVGPTGGGKSVVINALVKTSTVL-GYPARTYTLNPKA 643 (741)
Q Consensus 593 v~qL~e~l~~r--~gv~lvGp~gsGKTt~~~~L~~a~~~~-~~~~~~~~inpka 643 (741)
+.+|...+... ..++|+||||+|||++.+.+++.+..- .....+..+||..
T Consensus 46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 44566665554 449999999999999999999986421 1122344555543
No 158
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.08 E-value=0.036 Score=58.66 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=27.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEE
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTY 637 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~ 637 (741)
..++|+||+||||||+++.|+..+...+..+.+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~ 136 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFC 136 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 4788999999999999999999887655444443
No 159
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.07 E-value=0.033 Score=58.71 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=24.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLG 631 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~ 631 (741)
.++++|+||||+|||++.+.+++.+...+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~ 65 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRG 65 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 36899999999999999999999875433
No 160
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.04 E-value=0.025 Score=57.96 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.7
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-++|+|||||||||+.+.|++.++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 478999999999999999998864
No 161
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.04 E-value=0.027 Score=60.14 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=23.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
++++|+||||+|||++.+.+++.+.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6899999999999999999999875
No 162
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.03 E-value=0.063 Score=56.72 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=28.6
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc-cCCCCeEE
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST-VLGYPART 636 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~-~~~~~~~~ 636 (741)
..+++|+||||+|||++.+.++..+. ..|.++.+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~ 186 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTL 186 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEE
Confidence 57999999999999999999999887 66655543
No 163
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.02 E-value=0.022 Score=55.43 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=22.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
..-|+|.|++||||||+.+.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999876
No 164
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.02 E-value=0.025 Score=57.86 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=22.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...|.|+||+||||||+.+.|++.++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 44688999999999999999997653
No 165
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.98 E-value=0.025 Score=59.17 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=21.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHHh
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
..|+|+|||||||||+.+.|++.+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998875
No 166
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.96 E-value=0.027 Score=54.44 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=21.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..|+|+|++||||||+.+.|++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999987
No 167
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.93 E-value=0.024 Score=56.89 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=23.3
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.+++++++||||+|||+....|++.+
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999886
No 168
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.91 E-value=0.046 Score=58.51 Aligned_cols=38 Identities=24% Similarity=0.285 Sum_probs=30.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN 640 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~in 640 (741)
...++|+||+||||||+++.|+..+...+..+.+.-.+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D 166 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD 166 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 45788999999999999999999887666555544433
No 169
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.90 E-value=0.03 Score=55.37 Aligned_cols=24 Identities=13% Similarity=0.272 Sum_probs=21.6
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-|+|.|+|||||||+.+.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999763
No 170
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.89 E-value=0.04 Score=55.01 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.8
Q ss_pred hhccceEEEEecCCCChhHHHHHHHHH
Q psy17620 600 MLTRHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 600 l~~r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
+.....+.|+||+||||||++++++..
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 355667899999999999999999987
No 171
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.83 E-value=0.028 Score=54.79 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.5
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-|+|.|++||||||+.+.|++.++
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998753
No 172
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.82 E-value=0.03 Score=55.82 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.6
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-++|.|||||||+|..+.|++.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 378999999999999999999874
No 173
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.79 E-value=0.04 Score=58.53 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=23.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
.+.++|+||+|+|||++++.+++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987643
No 174
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.78 E-value=0.031 Score=53.33 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=22.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
...+.|+||.||||||+++.++..+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3357899999999999999999987
No 175
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.75 E-value=0.043 Score=57.97 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=25.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYP 633 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~ 633 (741)
...++|+||+||||||+++.|+..+...+..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~ 130 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTK 130 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCe
Confidence 3468899999999999999999987654433
No 176
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.71 E-value=0.049 Score=58.63 Aligned_cols=41 Identities=27% Similarity=0.388 Sum_probs=30.9
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV 644 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~ 644 (741)
..|.|+|+||+||||+++.|...+...+.++.+...+|.+.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 35789999999999999999998766556666666666543
No 177
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.70 E-value=0.034 Score=56.06 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-..|+|.|||||||+|..+.|++.++
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 34678899999999999999999874
No 178
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.70 E-value=0.02 Score=57.30 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=15.2
Q ss_pred ceEEEEecCCCChhHHHHHHH-HHh
Q psy17620 604 HSTMIVGPTGGGKSVVINALV-KTS 627 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~-~a~ 627 (741)
.-+.|+||+||||||+.+.|+ +.+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 357899999999999999999 765
No 179
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.69 E-value=0.026 Score=55.23 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=19.4
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q psy17620 605 STMIVGPTGGGKSVVINALVK 625 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~ 625 (741)
.|.|+||+||||||+.+.|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 180
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.69 E-value=0.033 Score=55.65 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.6
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-|+|.|++||||||+.+.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998873
No 181
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.68 E-value=0.032 Score=54.42 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.3
Q ss_pred eEEEEecCCCChhHHHHHHHHHh
Q psy17620 605 STMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
-|.|+|++||||||+.+.|++ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 478999999999999999998 5
No 182
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.67 E-value=0.035 Score=55.16 Aligned_cols=24 Identities=21% Similarity=0.410 Sum_probs=21.9
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-|+|.|+|||||||+.+.|++.++
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999874
No 183
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.64 E-value=0.054 Score=52.81 Aligned_cols=59 Identities=8% Similarity=0.110 Sum_probs=37.3
Q ss_pred CCeEEEEc--CCCChhhhhhccccccCCceeecc--C----CCeeecCCC----ceEEEEeCCCCC--C-CCCC
Q psy17620 682 ERKYILFD--GDVDALWIENMNSVMDDNKILTLA--N----GERIRLLAH----CQLLFEIHPIQS--D-SHPR 740 (741)
Q Consensus 682 ~~~WIVfD--G~vd~~wiE~LNsvLDdnk~L~L~--n----Geri~l~~~----~rliFE~~~L~~--a-SPAt 740 (741)
....|++| ..+++.|++.|+.+.|++..+.+. + |+-+..++. .-.+.|+..+.+ - .|||
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ic~~cg~~~a~ 149 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAVCHRCGEYNAT 149 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCBCCTTTCCSCBC
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEeeeecCCCCCeece
Confidence 35799999 567788999999999887655442 1 122222221 235678877765 2 5665
No 184
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.55 E-value=0.053 Score=57.64 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=21.7
Q ss_pred EEEEecCCCChhHHHHHHHHHhc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
++++||+|+||||+.+.+++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999999874
No 185
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.53 E-value=0.037 Score=54.41 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.9
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.+.|+||+||||||+++.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 478999999999999999999875
No 186
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.47 E-value=0.061 Score=53.85 Aligned_cols=99 Identities=23% Similarity=0.250 Sum_probs=56.2
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccc--cCCCCCccc---ChHHHHHHHh--cCCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVL--NPETRDWYD---GLLSNIFRAV--NKPL 676 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~--d~~t~eW~D---Gvls~i~R~~--~~~~ 676 (741)
.-|++.|++||||||..+.|++.+...|.++.. .=.|..-...+....+ ++...+|.+ .++-.+-|.- ....
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~-~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~~i 85 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQL-TREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVI 85 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE-EESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHHTH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccc-ccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999999887777643 3356533332222221 222223332 2222222211 0000
Q ss_pred CCCCCCCeEEEEc----------C---CCChhhhhhcccc
Q psy17620 677 DPGSKERKYILFD----------G---DVDALWIENMNSV 703 (741)
Q Consensus 677 ~~~~~~~~WIVfD----------G---~vd~~wiE~LNsv 703 (741)
...-...+|+|+| | .+|..|++.+|..
T Consensus 86 ~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~ 125 (213)
T 4edh_A 86 RPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESF 125 (213)
T ss_dssp HHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHH
T ss_pred HHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHH
Confidence 0001245899999 2 3677899888864
No 187
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.46 E-value=0.028 Score=57.15 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.1
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++|+..+.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34578999999999999999987654
No 188
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.46 E-value=0.048 Score=53.81 Aligned_cols=31 Identities=16% Similarity=0.105 Sum_probs=25.2
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc-cCCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST-VLGYP 633 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~-~~~~~ 633 (741)
..-|+|+|++||||||+.+.|++.+. ..|.+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~ 56 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVH 56 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCc
Confidence 44688999999999999999999886 33433
No 189
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.46 E-value=0.19 Score=58.15 Aligned_cols=43 Identities=28% Similarity=0.427 Sum_probs=30.9
Q ss_pred hhccceEEEEecCCCChhHHHHHHHHHhccC--CCCeEEEEeCCC
Q psy17620 600 MLTRHSTMIVGPTGGGKSVVINALVKTSTVL--GYPARTYTLNPK 642 (741)
Q Consensus 600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~--~~~~~~~~inpk 642 (741)
...+.-+++.|+||||||+++..+..++..+ +....+..+-|.
T Consensus 161 ~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APT 205 (608)
T 1w36_D 161 ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPT 205 (608)
T ss_dssp HHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSS
T ss_pred HhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCC
Confidence 3457789999999999999999888887643 223344455553
No 190
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.42 E-value=0.063 Score=56.85 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=31.6
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP 641 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp 641 (741)
...++++||+||||||+...|+..+...|.++.....++
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 346889999999999999999999877676666655554
No 191
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.40 E-value=0.065 Score=56.44 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=33.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhcc-CCCCeEEEEeCCCc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTV-LGYPARTYTLNPKA 643 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~-~~~~~~~~~inpka 643 (741)
...++++||+|+||||++..|+..+.. .|.++.+...+|..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r 146 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR 146 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence 457899999999999999999999874 67777777777643
No 192
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.40 E-value=0.038 Score=58.60 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=24.5
Q ss_pred hhccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 600 MLTRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 600 l~~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
+.....+.|+||+||||||+++.|+..+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3446679999999999999999999987
No 193
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.39 E-value=0.038 Score=54.53 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.4
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
....+.|+||+||||||+++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999854
No 194
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.38 E-value=0.029 Score=57.34 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=22.3
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..++|+|+|||||||+.+.|++.+.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999998764
No 195
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.36 E-value=0.061 Score=57.62 Aligned_cols=42 Identities=29% Similarity=0.333 Sum_probs=33.1
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV 644 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~ 644 (741)
...+.|+||||+||||+++.|...+...+..+.+.-.+|...
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~ 96 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSST 96 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCccc
Confidence 446789999999999999999988766566666666666543
No 196
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.33 E-value=0.043 Score=52.51 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=21.5
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-.+|+||+||||||+++++..++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999998864
No 197
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.25 E-value=0.081 Score=58.51 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=26.2
Q ss_pred HHHHhhccce-EEEEecCCCChhHHHHHHHHHhccC
Q psy17620 596 MYETMLTRHS-TMIVGPTGGGKSVVINALVKTSTVL 630 (741)
Q Consensus 596 L~e~l~~r~g-v~lvGp~gsGKTt~~~~L~~a~~~~ 630 (741)
|.+.+....+ +.|+||+||||||+++++...+...
T Consensus 159 L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 159 FRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp HHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred HHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 3344333444 6899999999999999999987643
No 198
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.23 E-value=0.043 Score=61.16 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=23.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.++++++||||+|||++.+.+++.++
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 36899999999999999999999874
No 199
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.22 E-value=0.043 Score=55.09 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.6
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-|+|.|++||||||+.+.|++.++
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999874
No 200
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.21 E-value=0.034 Score=56.02 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+.|+||+||||||++++++..+.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3577999999999999999987653
No 201
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.21 E-value=0.046 Score=62.08 Aligned_cols=32 Identities=25% Similarity=0.465 Sum_probs=26.5
Q ss_pred HHHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 597 YETMLTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 597 ~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+..+..+.|+||+||||||++++|...+.
T Consensus 254 ~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 254 WLAIEHKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp HHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34455677899999999999999999987764
No 202
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.17 E-value=0.049 Score=55.48 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=22.9
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...-|.|.|||||||||+.+.|++.++
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345688999999999999999998764
No 203
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.17 E-value=0.083 Score=59.39 Aligned_cols=25 Identities=28% Similarity=0.626 Sum_probs=23.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
..||+|+||||+|||++.+.+++..
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 204
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.16 E-value=0.065 Score=54.40 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..-|+|.|||||||||+.+.|++.++
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999998763
No 205
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.14 E-value=0.059 Score=55.41 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...|.|+|++||||||+.+.|++.++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999999874
No 206
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.13 E-value=0.05 Score=60.63 Aligned_cols=26 Identities=31% Similarity=0.608 Sum_probs=23.6
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.++++|+||||+|||++.+.|++.+.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999873
No 207
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.10 E-value=0.04 Score=55.09 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=21.4
Q ss_pred hccceEEEEecCCCChhHHHHHHHH
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVK 625 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~ 625 (741)
.....+.|+||+||||||+++.++.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3455789999999999999999983
No 208
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.06 E-value=0.059 Score=58.31 Aligned_cols=31 Identities=23% Similarity=0.467 Sum_probs=26.4
Q ss_pred HhhccceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 599 TMLTRHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 599 ~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
.+..+..+.|+||+||||||+++.|...+..
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4556778999999999999999999887643
No 209
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.04 E-value=0.12 Score=58.57 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=30.3
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS 645 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t 645 (741)
.++++|+||||+|||++.+.+++.++ ..+..+|+....
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~-----~~~i~in~s~~~ 114 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG-----YDILEQNASDVR 114 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT-----CEEEEECTTSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC-----CCEEEEeCCCcc
Confidence 37999999999999999999999873 455566665543
No 210
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.04 E-value=0.046 Score=58.02 Aligned_cols=28 Identities=18% Similarity=0.106 Sum_probs=24.2
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVL 630 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~ 630 (741)
...|.|+||+||||||+.+.|+..+...
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 3457899999999999999999988654
No 211
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.03 E-value=0.047 Score=55.31 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.0
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-|-|.||+||||||+.+.|+..++
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3477999999999999999999764
No 212
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.00 E-value=0.042 Score=56.08 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=21.9
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+.|+||+||||||++++++..+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999998754
No 213
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.00 E-value=0.041 Score=53.98 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.2
Q ss_pred ceEEEEecCCCChhHHHHHHHHHh
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.-|.|+|++||||||+.+.|++.+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 357899999999999999998865
No 214
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.99 E-value=0.033 Score=56.70 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++++..+.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34678999999999999999988764
No 215
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.97 E-value=0.07 Score=52.42 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=25.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPART 636 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~ 636 (741)
...++|+||+||||||+.+.++......+.++.+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~ 56 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIY 56 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 4568899999999999999999765443444433
No 216
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.97 E-value=0.08 Score=56.99 Aligned_cols=42 Identities=29% Similarity=0.334 Sum_probs=33.3
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV 644 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~ 644 (741)
..-|.|+|+||+||||++..|+.++...|.++-+...+|..-
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~ 120 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSST 120 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 346889999999999999999999887788888888877654
No 217
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.96 E-value=0.067 Score=57.99 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=25.9
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPA 634 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~ 634 (741)
...++|+||+||||||+++.|+..+...+..+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V 188 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV 188 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEE
Confidence 34688999999999999999999876544333
No 218
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.92 E-value=0.079 Score=56.27 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.1
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..++|+||||||||++...|++.+.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCccCHHHHHHHHHHhCC
Confidence 3588999999999999999998863
No 219
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.91 E-value=0.051 Score=52.56 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=21.0
Q ss_pred ceEEEEecCCCChhHHHHHHHHHh
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.-|.|+|++|+||||+++.+....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 367899999999999999998753
No 220
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.88 E-value=0.069 Score=56.86 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=22.1
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-|+|+||||||||++...|++.+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc
Confidence 4678999999999999999998764
No 221
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.86 E-value=0.05 Score=53.75 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.6
Q ss_pred cceEEEEecCCCChhHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVK 625 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~ 625 (741)
..-|.|+|++||||||+.+.|++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999987
No 222
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=92.85 E-value=0.081 Score=59.84 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=23.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
..||+|+||||||||++.+.++...
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999875
No 223
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.83 E-value=0.083 Score=55.70 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=22.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..|.|+||+||||||+.+.|+..+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999875
No 224
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.80 E-value=0.054 Score=52.41 Aligned_cols=24 Identities=33% Similarity=0.263 Sum_probs=21.3
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|.|+|++||||||+.+.|++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 346889999999999999999985
No 225
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.66 E-value=0.054 Score=52.49 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=20.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
--|.|+|++|+||||+++.|...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35889999999999999999875
No 226
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.60 E-value=0.092 Score=52.60 Aligned_cols=100 Identities=20% Similarity=0.284 Sum_probs=58.0
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccccccccc--cCC---CCCc---ccChHHHHHHHhc--
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVL--NPE---TRDW---YDGLLSNIFRAVN-- 673 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~~--d~~---t~eW---~DGvls~i~R~~~-- 673 (741)
.-|.+.|++||||||..+.|++.+...|.+.....=.|......+..-.+ ++. ..++ ...++-.+-|...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~~ 83 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVE 83 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999988776323445567654433322211 111 1222 2333333333211
Q ss_pred CCCCCCCCCCeEEEEc----------C---CCChhhhhhcccc
Q psy17620 674 KPLDPGSKERKYILFD----------G---DVDALWIENMNSV 703 (741)
Q Consensus 674 ~~~~~~~~~~~WIVfD----------G---~vd~~wiE~LNsv 703 (741)
......-..++|+|.| | .+|..|++.+|..
T Consensus 84 ~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~ 126 (213)
T 4tmk_A 84 TVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDA 126 (213)
T ss_dssp HTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHH
Confidence 0000001246899999 3 3678899998874
No 227
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.54 E-value=0.045 Score=55.78 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=22.3
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++|+..+.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578999999999999999998764
No 228
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.54 E-value=0.046 Score=54.87 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=22.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..-+.|+||+||||||++++|+..+.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578999999999999999988753
No 229
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.53 E-value=0.082 Score=56.77 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.9
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-|+|+||||||||++...|++.++
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHCC
Confidence 689999999999999999998764
No 230
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.52 E-value=0.11 Score=55.60 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=33.9
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV 644 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~ 644 (741)
...|.++|++|+||||+++.|+..+...+.++.+...+|...
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~ 97 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSP 97 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcC
Confidence 346789999999999999999999877777777777777654
No 231
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.50 E-value=0.046 Score=56.49 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=21.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+.|+||+||||||++++++..+.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3577999999999999999987654
No 232
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.47 E-value=0.047 Score=56.21 Aligned_cols=25 Identities=40% Similarity=0.703 Sum_probs=21.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+.|+||+||||||++++++..+.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577999999999999999988754
No 233
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.45 E-value=0.047 Score=56.98 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+.|+||+||||||++++|+..+.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4578999999999999999988653
No 234
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.44 E-value=0.047 Score=55.88 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.2
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++++..+.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578999999999999999988754
No 235
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.44 E-value=0.083 Score=55.64 Aligned_cols=34 Identities=21% Similarity=0.450 Sum_probs=27.9
Q ss_pred hHHHHHHHhhccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 592 DVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 592 Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.+.+|++.+. ...+.|+||+|+||||+++.|. ..
T Consensus 155 gi~~L~~~l~-G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 155 GIDELVDYLE-GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp THHHHHHHTT-TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CHHHHHhhcc-CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3777777654 5678999999999999999998 54
No 236
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.42 E-value=0.048 Score=56.52 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=22.1
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++++..+.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34577999999999999999998654
No 237
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.41 E-value=0.048 Score=55.50 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=21.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+.|+||+||||||++++|+..+.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3577999999999999999998754
No 238
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.38 E-value=0.085 Score=59.51 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=27.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEE
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPART 636 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~ 636 (741)
...++|+||+||||||+++.|+..+...+..+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l 326 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 326 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence 4468899999999999999999987655544443
No 239
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.36 E-value=0.094 Score=58.24 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=33.3
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK 642 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk 642 (741)
...|+++||+|+||||+...|+..+...|.++.+...++.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 4578899999999999999999999887877776666543
No 240
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.36 E-value=0.066 Score=59.46 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=24.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
.++++|+||||+|||++.+.+++.+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~ 156 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999988744
No 241
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.35 E-value=0.058 Score=55.26 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=20.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..+.|+||+||||||++++|+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35779999999999999999985
No 242
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.29 E-value=0.071 Score=51.76 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.7
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.|.|.|++||||||+.+.|++.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 578999999999999999998764
No 243
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.26 E-value=0.06 Score=55.78 Aligned_cols=24 Identities=33% Similarity=0.554 Sum_probs=21.3
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
...+.|+||+||||||++++++..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346789999999999999999986
No 244
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.24 E-value=0.073 Score=48.75 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.3
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+++|++|+||||+++.|...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999764
No 245
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.24 E-value=0.052 Score=54.84 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=22.2
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++++..+.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34578999999999999999988754
No 246
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.23 E-value=0.07 Score=49.31 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+++|++|+||||+++.|...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 247
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.21 E-value=0.052 Score=55.99 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.3
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++|+..+.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 44688999999999999999988653
No 248
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.19 E-value=0.086 Score=53.40 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=27.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccC----CCCeEEEEeCCCc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVL----GYPARTYTLNPKA 643 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~----~~~~~~~~inpka 643 (741)
..-|++.|++||||||..+.|++.+... |.++.. .=.|..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~-~rep~~ 68 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVV-TREPGG 68 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEE-EESSSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeee-ecCCCC
Confidence 3457889999999999999999998766 766643 335643
No 249
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.16 E-value=0.063 Score=58.18 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=21.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+.|+||+||||||++++++....
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3577999999999999999998754
No 250
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.16 E-value=0.08 Score=57.74 Aligned_cols=27 Identities=22% Similarity=0.398 Sum_probs=23.9
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
..+..+.|+||+||||||+.+.|++..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 446689999999999999999999875
No 251
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.12 E-value=0.054 Score=56.07 Aligned_cols=26 Identities=27% Similarity=0.555 Sum_probs=22.1
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++|+..+.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 34578999999999999999987753
No 252
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=92.11 E-value=0.15 Score=57.74 Aligned_cols=45 Identities=24% Similarity=0.364 Sum_probs=34.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhcc--CCCCeEEEEeCCCccccc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTV--LGYPARTYTLNPKAVSVI 647 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~--~~~~~~~~~inpka~t~~ 647 (741)
...++|.|+||||||++++++...+-. ....++++.++||.....
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~ 213 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELS 213 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhh
Confidence 356889999999999999999875422 224578999999985443
No 253
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.10 E-value=0.08 Score=52.10 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.9
Q ss_pred eEEEEecCCCChhHHHHHHHHHh
Q psy17620 605 STMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
-|.|+|++||||||+.+.|++.+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57799999999999999999875
No 254
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.10 E-value=0.12 Score=54.98 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=33.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK 642 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk 642 (741)
...++++||+|+||||+...|+..+...|.++.+...++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 4578899999999999999999998877777777766664
No 255
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.10 E-value=0.074 Score=48.85 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=19.9
Q ss_pred eEEEEecCCCChhHHHHHHHHH
Q psy17620 605 STMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a 626 (741)
-|+++|++|+||||+++.|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999865
No 256
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.06 E-value=0.056 Score=56.17 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=22.3
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++|+..+.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578999999999999999988754
No 257
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.04 E-value=0.076 Score=48.80 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.3
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+++|++|+||||+++.|...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998764
No 258
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.01 E-value=0.057 Score=55.66 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=22.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++|+..+.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578999999999999999988753
No 259
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.98 E-value=0.07 Score=55.38 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.8
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+|+|+|||||||+.+.|++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999985
No 260
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.96 E-value=0.073 Score=49.89 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.2
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|.|+|++|+||||+++.|...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999753
No 261
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.91 E-value=0.13 Score=57.34 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=33.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK 642 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk 642 (741)
...|+++|++|+||||+...|+..+...|.++-....+|.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 3578899999999999999999999887877776666654
No 262
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.87 E-value=0.078 Score=55.66 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=23.0
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
.-|.|+||+||||||+.+.|++.+..
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 35779999999999999999998864
No 263
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.85 E-value=0.061 Score=55.20 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=21.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+.|+||+||||||++++|+..+.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3578999999999999999988753
No 264
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.84 E-value=0.086 Score=48.77 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.2
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+++|++|+||||+++.|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999754
No 265
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.83 E-value=0.061 Score=56.15 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=21.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+.|+||+||||||++++|+..+.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3578999999999999999988754
No 266
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.81 E-value=0.11 Score=52.10 Aligned_cols=48 Identities=17% Similarity=0.260 Sum_probs=30.1
Q ss_pred HHHHhhccceEEEEecCCCChhHHHHHHHHH-hccCC--CCeEEEEeCCCc
Q psy17620 596 MYETMLTRHSTMIVGPTGGGKSVVINALVKT-STVLG--YPARTYTLNPKA 643 (741)
Q Consensus 596 L~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a-~~~~~--~~~~~~~inpka 643 (741)
....+.....++++||||||||+++....-. ....+ ....+..+.|.-
T Consensus 69 ~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 119 (235)
T 3llm_A 69 ILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRR 119 (235)
T ss_dssp HHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSH
T ss_pred HHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccch
Confidence 4445556788999999999999877655432 11111 234555666653
No 267
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.80 E-value=0.44 Score=48.03 Aligned_cols=99 Identities=18% Similarity=0.123 Sum_probs=49.3
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc--ccccc---cccccCCCCCcccChHHHHHHHhcCCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV--SVIEL---YGVLNPETRDWYDGLLSNIFRAVNKPLD 677 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~--t~~eL---yG~~d~~t~eW~DGvls~i~R~~~~~~~ 677 (741)
..-+++.||+|+||||..--++..+..-|.++. .+.|.-- ...++ .|---+. .... -...++..+.....
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVl--i~~~~~d~r~~~~i~srlG~~~~~-~~~~--~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYL--VFKPKIDTRSIRNIQSRTGTSLPS-VEVE--SAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEE--EEEECCCGGGCSSCCCCCCCSSCC-EEES--STHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE--EEEeccCchHHHHHHHhcCCCccc-cccC--CHHHHHHHHHHHhh
Confidence 345667899999999976555554443344443 3322211 11111 1210000 0010 11234433322211
Q ss_pred CCCCCCeEEEEc--CCCChhhhhhccccccCCc
Q psy17620 678 PGSKERKYILFD--GDVDALWIENMNSVMDDNK 708 (741)
Q Consensus 678 ~~~~~~~WIVfD--G~vd~~wiE~LNsvLDdnk 708 (741)
.....-|++| ..++...+|.+..+.|.+.
T Consensus 87 --~~~~dvViIDEaQ~l~~~~ve~l~~L~~~gi 117 (223)
T 2b8t_A 87 --NDETKVIGIDEVQFFDDRICEVANILAENGF 117 (223)
T ss_dssp --CTTCCEEEECSGGGSCTHHHHHHHHHHHTTC
T ss_pred --CCCCCEEEEecCccCcHHHHHHHHHHHhCCC
Confidence 2245799999 4477778888877666553
No 268
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.80 E-value=0.082 Score=53.75 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.8
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-|.|.|++||||||+.+.|++.++
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 588999999999999999999765
No 269
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.79 E-value=0.078 Score=56.64 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..|+|+|||||||||+.+.|++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999999864
No 270
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.78 E-value=0.12 Score=55.11 Aligned_cols=25 Identities=24% Similarity=0.149 Sum_probs=22.5
Q ss_pred eEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
-|.|.||+||||||+.+.|+..+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5789999999999999999998764
No 271
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.76 E-value=0.056 Score=55.56 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=22.1
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++++..+.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34577999999999999999988754
No 272
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.72 E-value=0.073 Score=57.60 Aligned_cols=26 Identities=19% Similarity=0.496 Sum_probs=22.2
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++++....
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34578999999999999999998754
No 273
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.71 E-value=0.064 Score=55.46 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=22.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++++..+.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34577999999999999999988753
No 274
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.71 E-value=0.087 Score=48.44 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+++|++|+||||+++.|...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998864
No 275
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.70 E-value=0.087 Score=48.64 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.3
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+++|++|+||||+++.|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998754
No 276
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.69 E-value=0.067 Score=51.13 Aligned_cols=22 Identities=45% Similarity=0.751 Sum_probs=19.8
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVK 625 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~ 625 (741)
.-|+|+|++|+||||+++.+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999876
No 277
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.66 E-value=0.068 Score=57.65 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=23.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..-+.|+||+||||||+++.|++.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999999864
No 278
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.63 E-value=0.078 Score=55.57 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=21.8
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYP 633 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~ 633 (741)
.-|.|.||+||||||+.+.|++.++..+..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~ 35 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVK 35 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCC
Confidence 457899999999999999999987654433
No 279
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.63 E-value=0.075 Score=58.04 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=21.8
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+.|+||+||||||++++++....
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC
Confidence 3577999999999999999998764
No 280
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.62 E-value=0.076 Score=57.56 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+.|+||+||||||++++++....
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCC
Confidence 3577999999999999999998754
No 281
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.62 E-value=0.089 Score=48.66 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
--|+++|++|+||||+++.|...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999865
No 282
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.62 E-value=0.088 Score=49.23 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+++|++|+||||+++.|...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999754
No 283
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.60 E-value=0.088 Score=50.29 Aligned_cols=24 Identities=29% Similarity=0.583 Sum_probs=21.2
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+++|++|+||||+++.|...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999865
No 284
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.58 E-value=0.077 Score=57.58 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=21.8
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+.|+||+||||||++++++....
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3577999999999999999998754
No 285
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.57 E-value=0.092 Score=48.65 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
--|+++|++|+||||+++.|...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999998854
No 286
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.54 E-value=0.093 Score=48.39 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+++|++|+||||+++.|...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 287
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=91.51 E-value=0.41 Score=50.10 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=37.1
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620 576 LMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK 642 (741)
Q Consensus 576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk 642 (741)
+++++.+....++......-+-.++..+..+++.+|||||||.++-..+...-..+....+.++-|.
T Consensus 17 ~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~ 83 (367)
T 1hv8_A 17 ILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPT 83 (367)
T ss_dssp HHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSC
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCC
Confidence 4566666666554432211122333444789999999999998865544332211223345555564
No 288
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.51 E-value=0.095 Score=54.45 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=22.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
+.+++++||||+|||.+.++|+...
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh
Confidence 4589999999999999999998864
No 289
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.44 E-value=0.095 Score=49.08 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=20.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+++|++|+||||+++.|...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998764
No 290
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.42 E-value=0.13 Score=55.87 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=28.1
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK 642 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk 642 (741)
.+..++++||||||||++++.+.......|.. +.+++|+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~--~~~~D~~ 72 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSR--VIIIDPE 72 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCC--EEEEESS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCE--EEEEeCC
Confidence 34568899999999999999998776544433 3334444
No 291
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.41 E-value=0.082 Score=57.56 Aligned_cols=25 Identities=20% Similarity=0.517 Sum_probs=21.8
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+.|+||+||||||++++++....
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCC
Confidence 3577999999999999999998754
No 292
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.41 E-value=0.072 Score=59.02 Aligned_cols=21 Identities=43% Similarity=0.664 Sum_probs=19.7
Q ss_pred EEEEecCCCChhHHHHHHHHH
Q psy17620 606 TMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a 626 (741)
++|+||+|+||||++++|.+.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999875
No 293
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.38 E-value=0.12 Score=52.10 Aligned_cols=44 Identities=20% Similarity=0.199 Sum_probs=34.0
Q ss_pred eEEEEecCCCChhHHHHHHHHHhcc-CCCCeEEEEeCCCcccccc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTV-LGYPARTYTLNPKAVSVIE 648 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~-~~~~~~~~~inpka~t~~e 648 (741)
-|.+.|++||||||+.+.|++.+.. .|.++....-.|..-...+
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~ 67 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNE 67 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHH
Confidence 4667899999999999999999987 7777666455676544433
No 294
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.37 E-value=0.1 Score=48.81 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.6
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+++|++|+||||+++.|...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998865
No 295
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.36 E-value=0.083 Score=57.51 Aligned_cols=25 Identities=20% Similarity=0.496 Sum_probs=21.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+.|+||+||||||++++++....
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 3577999999999999999998754
No 296
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.35 E-value=0.16 Score=50.00 Aligned_cols=39 Identities=23% Similarity=0.212 Sum_probs=31.0
Q ss_pred EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS 645 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t 645 (741)
|.+.|+-||||||.++.|++.+...|.++... =.|....
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t-reP~~t~ 41 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK-REPGGTE 41 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE-ESSCSSH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE-ECCCCCc
Confidence 56889999999999999999998888776543 3565433
No 297
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.34 E-value=0.094 Score=48.51 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.9
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVK 625 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~ 625 (741)
.-|+++|++|+||||+++.|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999875
No 298
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.33 E-value=0.09 Score=58.85 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.4
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...-++|+||+||||||++|+|+....
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 345699999999999999999998753
No 299
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.33 E-value=0.094 Score=48.50 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=18.6
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q psy17620 605 STMIVGPTGGGKSVVINALVK 625 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~ 625 (741)
-|+++|++|+||||+++.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999998853
No 300
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.30 E-value=0.18 Score=50.98 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=33.9
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV 644 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~ 644 (741)
.++++|.+|+||||+...|+.++. .|.++-+...+|..-
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~ 54 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVK 54 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCcc
Confidence 578999999999999999999998 788888888888643
No 301
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.30 E-value=0.13 Score=54.10 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=27.0
Q ss_pred HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
+.++++.+ ....+.++||+|+||||+++.|+...
T Consensus 160 v~~lf~~l-~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYL-KGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHH-SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHh-cCCeEEEECCCCCcHHHHHHHhcccc
Confidence 66666554 35678899999999999999987653
No 302
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.29 E-value=0.094 Score=49.76 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+|+|++|+||||+++.|...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999763
No 303
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.28 E-value=0.099 Score=49.55 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.3
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|.|+|++|+||||+++.|...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999764
No 304
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.28 E-value=0.096 Score=48.80 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=20.0
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+++|++|+||||+++.|...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46899999999999999998753
No 305
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.27 E-value=0.045 Score=58.04 Aligned_cols=26 Identities=31% Similarity=0.621 Sum_probs=22.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++|+..+.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCC
Confidence 44688999999999999999988654
No 306
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.26 E-value=0.076 Score=54.95 Aligned_cols=25 Identities=28% Similarity=0.606 Sum_probs=21.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
...+.|+||+||||||++++++..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457899999999999999998765
No 307
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.26 E-value=0.15 Score=52.89 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=27.5
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhccC-CCCeEE
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTSTVL-GYPART 636 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~-~~~~~~ 636 (741)
....-+.|+||||+||||+.+.++..+..- |.++.+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~ 69 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGL 69 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 345578999999999999999999887543 444433
No 308
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.24 E-value=0.09 Score=57.60 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=22.3
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..-+.|+||+||||||++++++....
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCEEEEECCCCChHHHHHHHHhCCCC
Confidence 44678999999999999999997653
No 309
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.20 E-value=0.11 Score=48.06 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+++|++|+||||+++.|...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998864
No 310
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.16 E-value=0.16 Score=53.13 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=28.1
Q ss_pred HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
+.+|.+.+.....++|+||+|+|||++++.+++..
T Consensus 21 l~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 21 SRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 44555555556889999999999999999988764
No 311
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.10 E-value=0.12 Score=48.58 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.8
Q ss_pred eEEEEecCCCChhHHHHHHHHHh
Q psy17620 605 STMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
-.+|+||.|||||+++.++.-++
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999998876
No 312
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.09 E-value=0.086 Score=48.94 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=21.8
Q ss_pred hccceEEEEecCCCChhHHHHHHHHH
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
....-|+++|++|+||||+++.|...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34457999999999999999999753
No 313
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.08 E-value=0.1 Score=48.36 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=18.7
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q psy17620 605 STMIVGPTGGGKSVVINALVK 625 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~ 625 (741)
-|+++|++|+||||+++.|..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999863
No 314
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.08 E-value=0.11 Score=48.38 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=20.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
+.-|+++|++|+||||+++.|...
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999998753
No 315
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.04 E-value=0.077 Score=55.73 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=21.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-+.|+||+||||||++++|+..+.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3578999999999999999988754
No 316
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.01 E-value=0.11 Score=49.12 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+|+|++|+||||+++.|...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 317
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.01 E-value=0.062 Score=52.22 Aligned_cols=24 Identities=25% Similarity=0.399 Sum_probs=20.3
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|.|+|++|+||||+++.|...
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 345899999999999999988654
No 318
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.96 E-value=0.11 Score=55.89 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-|+|+|||||||||+.+.|++.++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3688999999999999999999874
No 319
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.88 E-value=0.12 Score=48.89 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=20.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
+.-|+++|++|+||||+++.|...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 320
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.87 E-value=0.11 Score=49.23 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
--|+++|++|+||||+++.|...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999875
No 321
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.86 E-value=0.19 Score=52.90 Aligned_cols=40 Identities=20% Similarity=0.207 Sum_probs=33.3
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK 642 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk 642 (741)
...++++|++|+||||+...|+..+...|.++.+...+|.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4467899999999999999999998877777777766654
No 322
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.84 E-value=0.23 Score=48.68 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=22.6
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..-|+++|++|+||||+++.|...+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34788999999999999999998764
No 323
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.83 E-value=0.11 Score=49.45 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+|+|++|+||||+++.|...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999998754
No 324
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=90.79 E-value=0.1 Score=54.90 Aligned_cols=24 Identities=46% Similarity=0.671 Sum_probs=20.1
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-.|+|+||+|+||||+++.|...
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 346799999999999999998753
No 325
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.79 E-value=0.12 Score=47.61 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.3
Q ss_pred EEEEecCCCChhHHHHHHHHH
Q psy17620 606 TMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a 626 (741)
|+++|++|+|||++++.|...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
No 326
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.78 E-value=0.07 Score=57.59 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=21.8
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+.|+||+||||||++++++....
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Confidence 4577999999999999999998754
No 327
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.78 E-value=0.12 Score=51.79 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.6
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.|.|+|++||||||+.+.|++.++
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998763
No 328
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.77 E-value=0.12 Score=50.61 Aligned_cols=25 Identities=32% Similarity=0.589 Sum_probs=21.6
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
..-|+++|++|+||||+++.|....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998753
No 329
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.74 E-value=0.12 Score=48.15 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=20.6
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+++|++|+||||+++.|...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999865
No 330
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.73 E-value=0.1 Score=56.60 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.6
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+.|+||+||||||++++++..+.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCC
Confidence 3577999999999999999998653
No 331
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.68 E-value=0.22 Score=52.21 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=33.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 643 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka 643 (741)
...++++|++|+||||+...|+..+...+.++.+...++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 45788999999999999999999988777777776666654
No 332
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.66 E-value=0.14 Score=61.26 Aligned_cols=26 Identities=23% Similarity=0.592 Sum_probs=23.1
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
...+|+|+||||||||++.+.+++.+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998875
No 333
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.63 E-value=0.11 Score=48.44 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.5
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVK 625 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~ 625 (741)
.-|+++|++|+||||+++.|..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999864
No 334
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=90.62 E-value=2 Score=44.99 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=55.9
Q ss_pred CcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccCCCCCCCCchHHHhhccee-ee
Q psy17620 422 GAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRP-VV 500 (741)
Q Consensus 422 GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNpgy~gr~eLP~nLk~lFRp-va 500 (741)
|..+++||+++++.+++..+- ..+..+...+.-.|........+.+..|+||.. ..+++.|...|.. +.
T Consensus 145 ~~vl~iDEi~~l~~~~~~~Ll-------~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~---~~l~~~L~~R~~~~~~ 214 (350)
T 1g8p_A 145 RGYLYIDECNLLEDHIVDLLL-------DVAQSGENVVERDGLSIRHPARFVLVGSGNPEE---GDLRPQLLDRFGLSVE 214 (350)
T ss_dssp TEEEEETTGGGSCHHHHHHHH-------HHHHHSEEEECCTTCCEEEECCEEEEEEECSCS---CCCCHHHHTTCSEEEE
T ss_pred CCEEEEeChhhCCHHHHHHHH-------HHHhcCceEEEecceEEeeCCceEEEEEeCCCC---CCCCHHHHhhcceEEE
Confidence 678999999999998766543 333334334555677777778899999999842 3688999999965 77
Q ss_pred ccCC-CHH
Q psy17620 501 CIVP-DFE 507 (741)
Q Consensus 501 m~~P-D~~ 507 (741)
+..| |.+
T Consensus 215 l~~~~~~~ 222 (350)
T 1g8p_A 215 VLSPRDVE 222 (350)
T ss_dssp CCCCCSHH
T ss_pred cCCCCcHH
Confidence 7777 543
No 335
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.62 E-value=0.13 Score=48.54 Aligned_cols=24 Identities=21% Similarity=0.562 Sum_probs=20.9
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+++|++|+||||+++.|...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999998764
No 336
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.61 E-value=0.12 Score=57.35 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=31.6
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK 642 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk 642 (741)
..|+++|++|+||||+...|+..+...|.++.+...+|.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 368899999999999999999988766666666655553
No 337
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.60 E-value=0.12 Score=48.78 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.5
Q ss_pred eEEEEecCCCChhHHHHHHHHH
Q psy17620 605 STMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a 626 (741)
-|+++|++|+||||+++.|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998754
No 338
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.56 E-value=0.12 Score=50.45 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=21.4
Q ss_pred ccceEEEEecCCCChhHHHHHHHH
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVK 625 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~ 625 (741)
....+.|+||||+||||+.+.++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999988
No 339
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.54 E-value=0.12 Score=48.27 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=20.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+++|++|+||||+++.|...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999998753
No 340
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.50 E-value=0.13 Score=48.16 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=20.9
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+++|++|+||||+++.|...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999998764
No 341
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.49 E-value=0.13 Score=48.15 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+++|++|+||||+++.|...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999998764
No 342
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.47 E-value=0.13 Score=48.28 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+++|++|+||||+++.|...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356999999999999999998864
No 343
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.44 E-value=0.13 Score=49.15 Aligned_cols=23 Identities=17% Similarity=0.546 Sum_probs=20.6
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+|+|++|+||||+++.|...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998864
No 344
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.44 E-value=0.15 Score=56.24 Aligned_cols=26 Identities=35% Similarity=0.472 Sum_probs=21.7
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.+--+.|+||+|+||||++++|....
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 34456799999999999999999854
No 345
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.42 E-value=0.13 Score=48.16 Aligned_cols=23 Identities=13% Similarity=0.375 Sum_probs=20.3
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+++|++|+||||+++.|...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999998754
No 346
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.40 E-value=0.13 Score=48.71 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+|+|++|+||||+++.|...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998765
No 347
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.38 E-value=0.14 Score=48.64 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=20.9
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+++|++|+||||+++.|...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998864
No 348
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=90.35 E-value=0.23 Score=57.83 Aligned_cols=35 Identities=20% Similarity=0.417 Sum_probs=24.4
Q ss_pred HHHhhccceEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620 597 YETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLG 631 (741)
Q Consensus 597 ~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~ 631 (741)
..++..+.-.+|.||||||||+.+-.+...+-..|
T Consensus 199 ~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~ 233 (646)
T 4b3f_X 199 LFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQG 233 (646)
T ss_dssp HHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 34455667789999999999987666555443333
No 349
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.35 E-value=0.13 Score=51.07 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.9
Q ss_pred ccceEEEEecCCCChhHHHHHHHHH
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
....+.|+||||+||||+.+.++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3557899999999999999999884
No 350
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.31 E-value=0.14 Score=48.75 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.6
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
--|+++|++|+||||+++.|...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 351
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.25 E-value=0.13 Score=51.29 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.3
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+|+|+||||+|||++...|++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 45789999999999999999887653
No 352
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.19 E-value=0.14 Score=53.18 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=19.4
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q psy17620 605 STMIVGPTGGGKSVVINALVK 625 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~ 625 (741)
-|.|+|++||||||+.+.|++
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999984
No 353
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=90.18 E-value=0.65 Score=45.51 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=27.4
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHH
Q psy17620 576 LMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVI 620 (741)
Q Consensus 576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~ 620 (741)
+++++.+....++..-. .+....+...+.+++++|||||||.++
T Consensus 25 l~~~l~~~g~~~~~~~Q-~~~i~~~~~~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 25 LLRGVFGYGFEEPSAIQ-QRAIMPIIEGHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp HHHHHHHHTCCSCCHHH-HHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred HHHHHHHCCCCCCcHHH-HHHHHHHhcCCCEEEECCCCCcHHHHH
Confidence 45666665554443221 122333445677999999999999874
No 354
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.13 E-value=0.14 Score=49.11 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+|+|++|+||||+++.|...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998764
No 355
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.13 E-value=0.1 Score=57.46 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
..-|+|+|+|||||||+.+.|++.+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3568899999999999999998765
No 356
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.09 E-value=0.071 Score=57.64 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=21.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+.|+||+||||||++++++....
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3577999999999999999998654
No 357
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.09 E-value=0.13 Score=55.74 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=22.7
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
....+.|+||+|+||||+++.|....
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 45679999999999999999998654
No 358
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.09 E-value=0.15 Score=48.63 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+++|++|+||||+++.|...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 346899999999999999999864
No 359
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.05 E-value=0.23 Score=49.26 Aligned_cols=33 Identities=21% Similarity=0.468 Sum_probs=22.8
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPA 634 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~ 634 (741)
....++|+||||+|||++...++......+.++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v 54 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPG 54 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 455789999999999999666554433333333
No 360
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.05 E-value=0.15 Score=48.07 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.3
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+++|++|+||||+++.|...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999998854
No 361
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.04 E-value=0.16 Score=48.93 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=20.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+++|++|+||||+++.+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 447899999999999999998863
No 362
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=90.03 E-value=0.35 Score=51.03 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=57.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCC-CCeEEEEeCCCccccccccccccCCCCCcccCh--HHHHHHHhcCCCCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLG-YPARTYTLNPKAVSVIELYGVLNPETRDWYDGL--LSNIFRAVNKPLDPG 679 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~-~~~~~~~inpka~t~~eLyG~~d~~t~eW~DGv--ls~i~R~~~~~~~~~ 679 (741)
.|..+++||+|+|||++.+.+++...... ....+..++|.. . .-|+ +..++..+.... .
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~--------------~--~~~id~ir~li~~~~~~p--~ 79 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG--------------E--NIGIDDIRTIKDFLNYSP--E 79 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS--------------S--CBCHHHHHHHHHHHTSCC--S
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc--------------C--CCCHHHHHHHHHHHhhcc--c
Confidence 46889999999999999999998643221 122344455431 0 1121 334444443221 1
Q ss_pred CCCCeEEEEcCCCChhhhhhccccccCCceeeccCCCeeecCCCceEEEEeCCCCCCCC
Q psy17620 680 SKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPIQSDSH 738 (741)
Q Consensus 680 ~~~~~WIVfDG~vd~~wiE~LNsvLDdnk~L~L~nGeri~l~~~~rliFE~~~L~~aSP 738 (741)
....+.+|+|. +|..=.+..|.+|. +|- ..|+++.+||-+++....-|
T Consensus 80 ~~~~kvviIde-ad~lt~~a~naLLk-----~LE-----ep~~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 80 LYTRKYVIVHD-CERMTQQAANAFLK-----ALE-----EPPEYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp SSSSEEEEETT-GGGBCHHHHHHTHH-----HHH-----SCCTTEEEEEEESCGGGSCH
T ss_pred cCCceEEEecc-HHHhCHHHHHHHHH-----HHh-----CCCCCeEEEEEECChHhChH
Confidence 23579999994 33333334454431 111 12456677776665544433
No 363
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.03 E-value=0.16 Score=50.05 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=22.1
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..|.|.|++||||||+.+.|++.++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4688999999999999999998753
No 364
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.01 E-value=0.16 Score=54.95 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=22.9
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+..++|+|++||||||+.+.|++.+.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34599999999999999999999864
No 365
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.95 E-value=0.16 Score=47.83 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.2
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
--|+++|++|+||||+++.|...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998754
No 366
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.87 E-value=0.16 Score=48.22 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=21.2
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-|+|+|++|+||||+++.+.....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4689999999999999988876543
No 367
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.81 E-value=0.16 Score=48.41 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=20.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
--|+|+|++|+||||+++.|...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999998764
No 368
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=89.80 E-value=0.2 Score=53.84 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.1
Q ss_pred cceEEE--EecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMI--VGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~l--vGp~gsGKTt~~~~L~~a~~ 628 (741)
...++| +||+|+|||++++.+++.+.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 346777 89999999999999988764
No 369
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.77 E-value=0.17 Score=48.55 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.--|+|+|++|+||||+++.|...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 446899999999999999999764
No 370
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=89.77 E-value=0.75 Score=44.33 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=29.4
Q ss_pred HHHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHHH
Q psy17620 575 VLMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVIN 621 (741)
Q Consensus 575 ~l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~ 621 (741)
-+++++.+....++..-. .+..+.+...+.+++++|||||||.++-
T Consensus 13 ~l~~~l~~~g~~~~~~~Q-~~~i~~~~~~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 13 ELLMGIFEMGWEKPSPIQ-EESIPIALSGRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp HHHHHHHTTTCCSCCHHH-HHHHHHHHTTCCEEEECCSSSTTHHHHH
T ss_pred HHHHHHHHCCCCCCCHHH-HHHHHHHccCCCEEEECCCCCchHHHHH
Confidence 356677766654443221 1233444556789999999999997654
No 371
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.75 E-value=0.17 Score=47.57 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.2
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+++|++|+||||+++.|...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999998853
No 372
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.75 E-value=0.12 Score=48.61 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.6
Q ss_pred cceEEEEecCCCChhHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALV 624 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~ 624 (741)
..-|+++|++|+||||+++.|.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 4579999999999999998876
No 373
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.73 E-value=0.15 Score=53.95 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=21.1
Q ss_pred ceEEEEecCCCChhHHHHHHHHHh
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.-++|+|++||||||+++.|.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 357899999999999999998764
No 374
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=89.70 E-value=0.28 Score=54.31 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=33.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 643 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka 643 (741)
...++++|++|+||||+...|+..+...|.++.....++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 45688999999999999999999998777777776666544
No 375
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.65 E-value=0.17 Score=48.89 Aligned_cols=23 Identities=22% Similarity=0.470 Sum_probs=20.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+|+|++|+||||+++.|...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998764
No 376
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.61 E-value=0.17 Score=48.24 Aligned_cols=23 Identities=13% Similarity=0.343 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+|+|++|+||||+++.|...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998754
No 377
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=89.60 E-value=0.15 Score=50.99 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.6
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+|+|++|+||||+++.|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 46899999999999999998864
No 378
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.59 E-value=0.17 Score=48.76 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=20.9
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+|+|++|+||||+++.|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999998765
No 379
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.58 E-value=0.32 Score=49.25 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=34.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK 642 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk 642 (741)
+..|++.|++|+||||+.-.++..+...|..+.+..++|.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q 45 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETH 45 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence 5579999999999999988888887777888888888883
No 380
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.58 E-value=0.17 Score=47.41 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=20.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.--|+++|++|+||||+++.+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998754
No 381
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.54 E-value=0.18 Score=48.21 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.6
Q ss_pred eEEEEecCCCChhHHHHHHHHHh
Q psy17620 605 STMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
-|+|+|++|+||||+++.|....
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 382
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=89.54 E-value=0.17 Score=48.13 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+++|++|+||||+++.|...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999998864
No 383
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.54 E-value=0.29 Score=55.35 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=32.0
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP 641 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inp 641 (741)
..|+++|++|+||||+...|+..+...|.++-+...+|
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 46889999999999999999999887777777666655
No 384
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=89.52 E-value=0.23 Score=56.43 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=25.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYP 633 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~ 633 (741)
...|+++|.|||||||+.+.|++.++..+..
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d 65 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVP 65 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCC
Confidence 3468999999999999999999988654433
No 385
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.48 E-value=0.12 Score=57.21 Aligned_cols=23 Identities=48% Similarity=0.703 Sum_probs=20.5
Q ss_pred eEEEEecCCCChhHHHHHHHHHh
Q psy17620 605 STMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.|+|+||+|+||||+++.|....
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46999999999999999998754
No 386
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.44 E-value=0.18 Score=47.91 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.1
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+|+|++|+||||+++.|...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 347899999999999999999765
No 387
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.43 E-value=0.18 Score=48.26 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
+.-|+|+|++|+||||+++.+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999887764
No 388
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.42 E-value=0.17 Score=48.21 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=20.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+++|++|+||||+++.|...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999988643
No 389
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.39 E-value=0.18 Score=48.16 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.9
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+|+|++|+||||+++.|...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999764
No 390
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.39 E-value=0.19 Score=48.61 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.1
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+|+|++|+||||+++.|...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 346899999999999999999865
No 391
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.32 E-value=0.1 Score=52.36 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.2
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-+.|+|+.||||||+.+.|++.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35789999999999999998876
No 392
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.27 E-value=0.47 Score=52.03 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=20.7
Q ss_pred ccceEEEEecCCCChhHHHHHHHHH
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
...-+.|+|||||||||+.+.++-.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3556889999999999999977643
No 393
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.21 E-value=0.19 Score=48.11 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.9
Q ss_pred eEEEEecCCCChhHHHHHHHHH
Q psy17620 605 STMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a 626 (741)
-|+|+|++|+||||+++.|...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998764
No 394
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=89.20 E-value=0.14 Score=47.95 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+++|++|+|||++++.|...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999998864
No 395
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.19 E-value=0.19 Score=48.28 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.1
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.--|+|+|++|+||||+++.|...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998864
No 396
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=89.16 E-value=0.31 Score=54.01 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=35.2
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccC-CCCeEEEEeCCCc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVL-GYPARTYTLNPKA 643 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~-~~~~~~~~inpka 643 (741)
..|+++|++|+||||+.-.|+.++... |.++-....+|..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 478899999999999999999999887 8888888888754
No 397
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=89.11 E-value=0.17 Score=52.07 Aligned_cols=22 Identities=45% Similarity=0.688 Sum_probs=19.3
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVK 625 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~ 625 (741)
.-|+|+|++|+||||+++.|..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999998753
No 398
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=89.09 E-value=0.19 Score=48.02 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
--|+|+|++|+|||++++.|...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 36899999999999999998764
No 399
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.07 E-value=0.21 Score=51.46 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=23.7
Q ss_pred hccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 601 LTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 601 ~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.....+.|+||+||||||+...++....
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3456789999999999999999987654
No 400
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.06 E-value=0.19 Score=48.55 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+|+|++|+||||+++.|...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999998854
No 401
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=89.05 E-value=0.28 Score=51.27 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=27.0
Q ss_pred HHHHHHHhhccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 593 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 593 v~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+.+|.+ +.. ..++|.||+|+|||++++.+++...
T Consensus 22 l~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 22 IEKLKG-LRA-PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp HHHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 445555 444 6899999999999999999987753
No 402
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.02 E-value=0.2 Score=47.97 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.2
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+++|++|+||||+++.+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 457999999999999999998865
No 403
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=89.01 E-value=0.19 Score=48.44 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.3
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+|+|++|+||||+++.|...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998754
No 404
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=89.00 E-value=0.3 Score=55.92 Aligned_cols=44 Identities=30% Similarity=0.453 Sum_probs=34.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCC--CCeEEEEeCCCcccc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLG--YPARTYTLNPKAVSV 646 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~--~~~~~~~inpka~t~ 646 (741)
...++|.|.||||||++++++...+-... ..++++.|+||....
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg~eL 259 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKMLEL 259 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSSHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCChhhh
Confidence 35678999999999999999888764332 358899999997543
No 405
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=88.98 E-value=0.18 Score=48.97 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=19.9
Q ss_pred cceEEEEecCCCChhHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVK 625 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~ 625 (741)
..-|+++|++|+||||+++.|..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999864
No 406
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=88.97 E-value=0.17 Score=52.03 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.0
Q ss_pred ceEEEEecCCCChhHHHHHHHHHh
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
.-|.|+|++|+||||+++.|....
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999997653
No 407
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=88.97 E-value=0.2 Score=54.22 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=20.3
Q ss_pred eEEEEecCCCChhHHHHHHHHHh
Q psy17620 605 STMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
-++|+||+||||||+++++.-++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999998764
No 408
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.97 E-value=0.2 Score=50.34 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=21.9
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-|.+.|++||||||+.+.|++.+.
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999874
No 409
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.96 E-value=0.2 Score=48.35 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.9
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.--|+|+|++|+||||+++.|...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 347899999999999999998754
No 410
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.95 E-value=0.2 Score=47.62 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=20.6
Q ss_pred cceEEEEecCCCChhHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVK 625 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~ 625 (741)
..-|+++|++|+||||+++.|..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999874
No 411
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=88.95 E-value=0.35 Score=47.92 Aligned_cols=40 Identities=30% Similarity=0.423 Sum_probs=28.7
Q ss_pred EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCccccc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI 647 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~ 647 (741)
|.+.|+-||||||.++.|++.+.. |.++.. .=.|......
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~-~~~v~~-~~eP~~t~~g 44 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVK-DYDVIM-TREPGGVPTG 44 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTT-TSCEEE-EESSTTCHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHC-CCCEEE-eeCCCCChHH
Confidence 668899999999999999999864 544433 3356544433
No 412
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.92 E-value=0.21 Score=48.56 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.8
Q ss_pred ccceEEEEecCCCChhHHHHHHHHH
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.+.-|+++|++|+||||+++.|...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcC
Confidence 3557999999999999999998864
No 413
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.89 E-value=0.21 Score=48.77 Aligned_cols=23 Identities=17% Similarity=0.505 Sum_probs=20.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
--|+|+|++|+||||+++.|...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999998765
No 414
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.85 E-value=0.21 Score=54.88 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.3
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-|+|+||||||||++...|++.+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 3578999999999999999999874
No 415
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=88.85 E-value=0.19 Score=47.63 Aligned_cols=25 Identities=12% Similarity=0.339 Sum_probs=21.4
Q ss_pred ccceEEEEecCCCChhHHHHHHHHH
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
...-|+++|++|+||||+++.|...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4557999999999999999998754
No 416
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=88.83 E-value=0.26 Score=54.07 Aligned_cols=38 Identities=32% Similarity=0.539 Sum_probs=26.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK 642 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpk 642 (741)
...++++|+||||||+.++.+...+-..| ..+.+++||
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g--~~viv~Dpk 90 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRG--DRMVIVDPN 90 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTT--CEEEEEEET
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEeCC
Confidence 56788999999999999887776543333 234444554
No 417
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=88.75 E-value=0.2 Score=47.45 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=20.9
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+++|++|+||||+++.|...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446899999999999999998754
No 418
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.73 E-value=0.4 Score=47.04 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=21.8
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-|+|+|++|+||||+++.|.....
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4678999999999999999988753
No 419
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.73 E-value=0.16 Score=58.05 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.9
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
...+.|+|++||||||+.+.|++.+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 446889999999999999999999864
No 420
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=88.71 E-value=0.21 Score=48.58 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=20.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
+.-|+++|++|+||||+++.|...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998864
No 421
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=88.68 E-value=0.28 Score=50.51 Aligned_cols=33 Identities=33% Similarity=0.455 Sum_probs=25.1
Q ss_pred HHHHHHhhcc-ceEEEEecCCCChhHHHHHHHHH
Q psy17620 594 VQMYETMLTR-HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 594 ~qL~e~l~~r-~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.+|.+.+... ..++++|.||+||||+++.|...
T Consensus 89 ~~L~~~l~~~~~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 89 VLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp HHHHHHCCCTTCEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhheEEeCCCCCCHHHHHHHHhcc
Confidence 3444444333 58999999999999999999864
No 422
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=88.67 E-value=0.16 Score=49.13 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.3
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVK 625 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~ 625 (741)
.-|+|+|++|+||||+++.|..
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999853
No 423
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=88.64 E-value=0.22 Score=48.11 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.2
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+|+|+||+||||+++.+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998854
No 424
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=88.63 E-value=0.22 Score=48.66 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=21.3
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+++|++|+||||+++.|...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999874
No 425
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=88.60 E-value=0.14 Score=48.37 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=9.9
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+++|++|+||||+++.|...
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998754
No 426
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=88.57 E-value=0.24 Score=48.91 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=21.8
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-.+|+||.||||||++.++.-++.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3568999999999999999988875
No 427
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.55 E-value=0.14 Score=58.77 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=23.3
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||+++.|++.+.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345688999999999999999998764
No 428
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=88.52 E-value=1 Score=44.92 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=29.3
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHH
Q psy17620 576 LMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVI 620 (741)
Q Consensus 576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~ 620 (741)
+++++.+....++..-. .+....+...+.+++.+|||||||.++
T Consensus 40 l~~~l~~~g~~~~~~~Q-~~~i~~~~~~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 40 LLQNILDAGFQMPTPIQ-MQAIPVMLHGRELLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHHHTTCCSCCHHH-HHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred HHHHHHHCCCCCCCHHH-HHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 57777776665543221 123344455677999999999999874
No 429
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=88.48 E-value=0.22 Score=48.16 Aligned_cols=23 Identities=22% Similarity=0.603 Sum_probs=20.2
Q ss_pred cceEEEEecCCCChhHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVK 625 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~ 625 (741)
.--|+|+|++|+||||+++.|..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 34789999999999999999874
No 430
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=88.41 E-value=0.25 Score=49.56 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=23.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhcc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTV 629 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~ 629 (741)
..-|++.|++||||||..+.|++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 346789999999999999999999864
No 431
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=88.29 E-value=0.22 Score=47.91 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.4
Q ss_pred cceEEEEecCCCChhHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALV 624 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~ 624 (741)
.--|+++|++|+|||++++.|.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHH
Confidence 3469999999999999999875
No 432
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=88.21 E-value=0.082 Score=53.57 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.6
Q ss_pred EEEEecCCCChhHHHHHHHHHhc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+.|+||+||||||++++++.++.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 45889999999999999999875
No 433
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=88.18 E-value=0.25 Score=47.73 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.1
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
+.-|+++|++|+||||+++.|...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446899999999999999998864
No 434
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=88.14 E-value=0.35 Score=53.97 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=25.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYP 633 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~ 633 (741)
...|+|+|.|||||||+.+.|++.+...+.+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~ 69 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVP 69 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCC
Confidence 4478999999999999999999987644333
No 435
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.14 E-value=0.24 Score=55.77 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..+.|+||+||||||++++|+..+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 4678999999999999999998864
No 436
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=88.12 E-value=0.23 Score=47.67 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=20.4
Q ss_pred ccceEEEEecCCCChhHHHHHHHHH
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
...-|+++|++|+||||+++.|...
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999998743
No 437
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=88.08 E-value=0.22 Score=47.74 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=19.5
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVK 625 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~ 625 (741)
--|+++|++|+||||+++.|..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999864
No 438
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.06 E-value=0.26 Score=47.02 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.6
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
--|+++|++|+|||++++.|...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999865
No 439
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=87.99 E-value=1.2 Score=42.78 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=27.9
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHHH
Q psy17620 576 LMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVIN 621 (741)
Q Consensus 576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~ 621 (741)
+++++.+....++..-. .+..+.+...+.+++.+|||||||.++-
T Consensus 12 l~~~l~~~~~~~~~~~Q-~~~i~~~~~~~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 12 ILEALHGRGLTTPTPIQ-AAALPLALEGKDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp HHHHHHHTTCCSCCHHH-HHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred HHHHHHHcCCCCCCHHH-HHHHHHHcCCCCEEEECCCCChHHHHHH
Confidence 45666665554443221 1223344456789999999999998743
No 440
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=87.95 E-value=0.52 Score=50.03 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=35.0
Q ss_pred HHHHHHhccCCCcchhh-----HHHHHHHhhc----------------cceEEEEecCCCChhHHHHHHHHH
Q psy17620 576 LMRALRDMNLPKFVSED-----VVQMYETMLT----------------RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 576 l~ral~~~~lPkl~~~D-----v~qL~e~l~~----------------r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
++.+.++.++|=+..+. +.+|...+.. ..||++.|+||+||||+...|.+.
T Consensus 96 lie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 96 LIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp HHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred HHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 45555666777543322 4444444444 568999999999999998888774
No 441
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=87.95 E-value=0.23 Score=47.32 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.1
Q ss_pred ccceEEEEecCCCChhHHHHHHHHH
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
...-|+|+|++|+||||+++.|...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3557999999999999999988643
No 442
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=87.94 E-value=0.25 Score=48.43 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.4
Q ss_pred cceEEEEecCCCChhHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVK 625 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~ 625 (741)
..-|+++|++|+||||+++.|..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 35799999999999999999874
No 443
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=87.85 E-value=0.12 Score=54.81 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=21.1
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
...++|+||||+||||+++.|....
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 5689999999999999999987653
No 444
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=87.83 E-value=0.21 Score=47.63 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHh
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
..-|+++|++|+||||+++.|....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999987653
No 445
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=87.77 E-value=0.28 Score=47.59 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=20.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+|+|++|+||||+++.|...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 346899999999999999998754
No 446
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=87.70 E-value=0.25 Score=48.17 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.1
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
--|+|+|++|+||||+++.|...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998753
No 447
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=87.66 E-value=0.3 Score=47.56 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=20.9
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..||++.|+||+||||+.-.|.+.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 458999999999999998888764
No 448
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=87.62 E-value=0.22 Score=50.53 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=20.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.--|+|+|+||+||||+++.|...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 346899999999999999998764
No 449
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=87.59 E-value=0.41 Score=51.76 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=25.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPA 634 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~ 634 (741)
...+.|+|||||||||+...++......+.++
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 45688999999999999999988766555444
No 450
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=87.58 E-value=0.21 Score=47.50 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=20.0
Q ss_pred ccceEEEEecCCCChhHHHHHHH
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALV 624 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~ 624 (741)
.+.-|+++|++|+||||+++.|.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 35579999999999999999874
No 451
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=87.40 E-value=0.3 Score=47.40 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.3
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
--|+++|++|+|||++++.|...
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998854
No 452
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=87.35 E-value=0.26 Score=48.85 Aligned_cols=24 Identities=21% Similarity=0.464 Sum_probs=20.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+|+|++|+||||+++.|...
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999998653
No 453
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=87.34 E-value=0.2 Score=57.58 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=22.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||+++.|+..+.
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccC
Confidence 44688999999999999999988764
No 454
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=87.26 E-value=0.25 Score=50.57 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=19.9
Q ss_pred eEEEEecCCCChhHHHHHHHHH
Q psy17620 605 STMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a 626 (741)
-|.|+|+||+||||+++.|...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4889999999999999999765
No 455
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=87.25 E-value=0.29 Score=47.04 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=19.8
Q ss_pred cceEEEEecCCCChhHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVK 625 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~ 625 (741)
..-|+++|++|+|||++++.+..
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 44799999999999999997665
No 456
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=87.06 E-value=0.32 Score=47.23 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=20.9
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+++|++|+||||+++.+...
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 457999999999999999988753
No 457
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=86.99 E-value=1.4 Score=44.35 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=28.0
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHHH
Q psy17620 576 LMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVIN 621 (741)
Q Consensus 576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~ 621 (741)
+.+++......++..-. .+....+...+.+++++|||||||.++-
T Consensus 54 l~~~l~~~g~~~~~~~Q-~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 54 LCEACDQLGWTKPTKIQ-IEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp HHHHHHHTTCCSCCHHH-HHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred HHHHHHHcCCCCCCHHH-HHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 45666665554433211 1233444566889999999999998754
No 458
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=86.92 E-value=0.31 Score=49.38 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=20.7
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+|+|++|+||||+++.|...
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999998754
No 459
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=86.86 E-value=0.31 Score=47.98 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+|+|++|+||||+++.|...
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998764
No 460
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=86.82 E-value=0.94 Score=44.37 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=35.9
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHHHHHHH-HhccCCCCeEEEEeCCC
Q psy17620 576 LMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVK-TSTVLGYPARTYTLNPK 642 (741)
Q Consensus 576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~-a~~~~~~~~~~~~inpk 642 (741)
+.+++.+....++..-. .+..+.+.....+++++|||||||.++-..+- .+..-+....+.++-|.
T Consensus 15 l~~~l~~~g~~~~~~~Q-~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 81 (219)
T 1q0u_A 15 IIEAIKTLRFYKPTEIQ-ERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPT 81 (219)
T ss_dssp HHHHHHHTTCCSCCHHH-HHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred HHHHHHHCCCCCCCHHH-HHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCc
Confidence 56667666654443211 11233444567899999999999987543222 22111123345555564
No 461
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=86.79 E-value=0.21 Score=57.61 Aligned_cols=26 Identities=38% Similarity=0.663 Sum_probs=22.5
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||++++|+..+.
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 44688999999999999999988754
No 462
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=86.73 E-value=0.3 Score=50.61 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|.|+|+||+||||+++.|...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 45889999999999999999864
No 463
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=86.68 E-value=1.2 Score=47.34 Aligned_cols=67 Identities=13% Similarity=0.203 Sum_probs=36.6
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHhhcc--ceEEEEecCCCChhHHHHH-HHHHhccCCCCeEEEEeCCCc
Q psy17620 576 LMRALRDMNLPKFVSEDVVQMYETMLTR--HSTMIVGPTGGGKSVVINA-LVKTSTVLGYPARTYTLNPKA 643 (741)
Q Consensus 576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r--~gv~lvGp~gsGKTt~~~~-L~~a~~~~~~~~~~~~inpka 643 (741)
+++++......++..-.. +..+.+... +.+++++|||||||.++-. +...+..-+....+.++-|..
T Consensus 36 l~~~l~~~g~~~~~~~Q~-~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 105 (412)
T 3fht_A 36 LLQGVYAMGFNRPSKIQE-NALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY 105 (412)
T ss_dssp HHHHHHHTTCCSCCHHHH-HHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred HHHHHHHcCCCCCCHHHH-HHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCH
Confidence 566777666554432211 123333343 7899999999999987532 222222222223455566643
No 464
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.66 E-value=0.21 Score=57.60 Aligned_cols=27 Identities=33% Similarity=0.666 Sum_probs=23.2
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|++.+.
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 355789999999999999999987654
No 465
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=86.65 E-value=1.6 Score=44.07 Aligned_cols=34 Identities=18% Similarity=0.063 Sum_probs=30.7
Q ss_pred EecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCc
Q psy17620 609 VGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 643 (741)
Q Consensus 609 vGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka 643 (741)
-|..|+||||+.-.|+.++. .|.++-....+|..
T Consensus 34 s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~ 67 (267)
T 3k9g_A 34 SIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQA 67 (267)
T ss_dssp CSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTC
T ss_pred eCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence 47888999999999999999 89999999999976
No 466
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=86.59 E-value=7.9 Score=43.53 Aligned_cols=85 Identities=13% Similarity=0.056 Sum_probs=50.9
Q ss_pred HhhhcCcceeecccccCChhhHHHHHHHHHHHHHHHhhcCceeEeecceEEecCCceEEEeccC-CCCCCCCchHHHhhc
Q psy17620 417 GLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGHDIIMNNKVGIFITMNP-GYAGRTELPESVKAL 495 (741)
Q Consensus 417 Glaq~GaW~cfDEfnrl~~~vLSvva~qi~~I~~al~~~~~~~~~~g~~i~l~~~~~iFiTmNp-gy~gr~eLP~nLk~l 495 (741)
|....+.++++||+|+++.++.+.+-+ ++. ...+...|....++..+ ++++.|| .-.| .+++.|...
T Consensus 105 g~l~~~~IL~IDEI~r~~~~~q~~LL~-------~le--e~~v~i~G~~~~~~~~~-iI~ATN~lpe~~--~~~~aLldR 172 (500)
T 3nbx_X 105 GYLPEAEIVFLDEIWKAGPAILNTLLT-------AIN--ERQFRNGAHVEKIPMRL-LVAASNELPEAD--SSLEALYDR 172 (500)
T ss_dssp TSGGGCSEEEEESGGGCCHHHHHHHHH-------HHH--SSEEECSSSEEECCCCE-EEEEESSCCCTT--CTTHHHHTT
T ss_pred cCCCcceeeeHHhHhhhcHHHHHHHHH-------HHH--HHhccCCCCcCCcchhh-hhhccccCCCcc--ccHHHHHHH
Confidence 333346689999999999988876533 332 24566678877777666 4455564 1112 133455555
Q ss_pred c-eeeeccCCCH-HHHHHHH
Q psy17620 496 F-RPVVCIVPDF-ELICQIM 513 (741)
Q Consensus 496 F-Rpvam~~PD~-~~I~ei~ 513 (741)
| ..+.+..|+. +...+++
T Consensus 173 F~~~i~v~~p~~~ee~~~IL 192 (500)
T 3nbx_X 173 MLIRLWLDKVQDKANFRSML 192 (500)
T ss_dssp CCEEEECCSCCCHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHH
Confidence 5 3466677876 3333343
No 467
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=86.59 E-value=0.44 Score=55.25 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=24.8
Q ss_pred eEEEEecCCCChhHHHHHHHHHhccCCCC
Q psy17620 605 STMIVGPTGGGKSVVINALVKTSTVLGYP 633 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~~~~~~ 633 (741)
-|+|+|.+||||||+.+.|++.+...|.+
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L~~~G~~ 82 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYLVCHGIP 82 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCe
Confidence 48999999999999999999998554544
No 468
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.58 E-value=0.34 Score=52.02 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.7
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHh
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~ 627 (741)
....+.|+||+||||||+.+.++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45568899999999999999999875
No 469
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=86.57 E-value=0.15 Score=52.06 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.9
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
.-|.|.|++||||||+.+.|++.+.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3578999999999999999998863
No 470
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=86.49 E-value=0.28 Score=50.22 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
.-|+|+|+||+||||+++.|...
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 35899999999999999999764
No 471
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.41 E-value=0.3 Score=55.72 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=23.2
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
....+.|+||+||||||++++|+..+.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455688999999999999999998653
No 472
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=86.35 E-value=0.35 Score=47.47 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.1
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
+.-|+|+|++|+|||++++.|...
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457999999999999999998764
No 473
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=86.24 E-value=0.81 Score=45.09 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=29.4
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHHHH
Q psy17620 576 LMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVINA 622 (741)
Q Consensus 576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~~ 622 (741)
+++++.+....++..-. .+....+...+.+++++|||||||.++-.
T Consensus 31 l~~~l~~~g~~~~~~~Q-~~~i~~~~~~~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 31 LLKSIIRVGILKPTPIQ-SQAWPIILQGIDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp HHHHHHHHTCCSCCHHH-HHHHHHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHH-HHHHHHHhCCCCEEEECCCCChHHHHHHH
Confidence 56777766554443221 12234445677899999999999987543
No 474
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=86.19 E-value=0.55 Score=48.06 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
..-|+++|++|+||||+++.|...
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 447899999999999999998754
No 475
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=86.13 E-value=0.43 Score=48.40 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.6
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q psy17620 605 STMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
-.-|.|+|||||||..+.|++.++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC
Confidence 567999999999999999999874
No 476
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=86.05 E-value=0.35 Score=53.68 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=23.0
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...-+.|+||+||||||++++++....
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 345678999999999999999998863
No 477
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=86.04 E-value=1.4 Score=45.94 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=27.9
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHhhcc--ceEEEEecCCCChhHHH
Q psy17620 576 LMRALRDMNLPKFVSEDVVQMYETMLTR--HSTMIVGPTGGGKSVVI 620 (741)
Q Consensus 576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r--~gv~lvGp~gsGKTt~~ 620 (741)
+++++......++..-.. +.+..+... +.+++++|||||||.++
T Consensus 103 l~~~l~~~g~~~pt~iQ~-~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 103 LLQGVYAMGFNRPSKIQE-NALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHHHTTCCSCCHHHH-HHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHHcCCCCCCHHHH-HHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 566676665555442211 123334443 78999999999999885
No 478
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=85.97 E-value=0.37 Score=51.85 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.8
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
..-+.|+||+|+||||+++++++...
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45678999999999999999999864
No 479
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=85.87 E-value=1.8 Score=42.81 Aligned_cols=45 Identities=13% Similarity=0.225 Sum_probs=28.6
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHHH
Q psy17620 576 LMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVIN 621 (741)
Q Consensus 576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~ 621 (741)
+.+++.+....++..-. .+....+.....+++++|||||||.++-
T Consensus 35 l~~~l~~~g~~~~~~~Q-~~~i~~~~~~~~~l~~a~TGsGKT~~~~ 79 (230)
T 2oxc_A 35 VLEGLRAAGFERPSPVQ-LKAIPLGRCGLDLIVQAKSGTGKTCVFS 79 (230)
T ss_dssp HHHHHHHTTCCSCCHHH-HHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred HHHHHHHCCCCCCCHHH-HHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 56666666554443211 1233444556789999999999998754
No 480
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=85.81 E-value=0.18 Score=48.45 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=4.9
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
--|+|+|++|+||||+++.|...
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999988765
No 481
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=85.69 E-value=0.32 Score=52.17 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.3
Q ss_pred eEEEEecCCCChhHHHHHHHHH
Q psy17620 605 STMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a 626 (741)
-|+|+|++||||||+++.|...
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999999999874
No 482
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=85.64 E-value=0.26 Score=57.04 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEEecCCCChhHHHHHHHHHh
Q psy17620 606 TMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~ 627 (741)
+.|+||+||||||++++|++..
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 7899999999999999998764
No 483
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=85.62 E-value=1.1 Score=49.42 Aligned_cols=67 Identities=13% Similarity=0.182 Sum_probs=36.8
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHhhcc--ceEEEEecCCCChhHHHHHHH-HHhccCCCCeEEEEeCCCc
Q psy17620 576 LMRALRDMNLPKFVSEDVVQMYETMLTR--HSTMIVGPTGGGKSVVINALV-KTSTVLGYPARTYTLNPKA 643 (741)
Q Consensus 576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r--~gv~lvGp~gsGKTt~~~~L~-~a~~~~~~~~~~~~inpka 643 (741)
+++++......++..-.. +....+... +.+++.||||||||.++-... ..+..-+....+.++-|.-
T Consensus 103 l~~~l~~~g~~~p~~~Q~-~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~ 172 (479)
T 3fmp_B 103 LLQGVYAMGFNRPSKIQE-NALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY 172 (479)
T ss_dssp HHHHHHHTTCCSCCHHHH-HHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSH
T ss_pred HHHHHHHcCCCCCCHHHH-HHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChH
Confidence 566777666655543221 122333333 789999999999998853322 1221112223556666653
No 484
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=85.46 E-value=0.39 Score=47.62 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.4
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVK 625 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~ 625 (741)
.-|+|+|++|+|||++++.+..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999998863
No 485
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=85.34 E-value=0.18 Score=57.85 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=22.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
...+.|+||+||||||+++.|.+.+.
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCC
Confidence 45688999999999999999887654
No 486
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=85.33 E-value=0.52 Score=54.12 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=24.3
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCC
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLG 631 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~ 631 (741)
.-|++.|++||||||+.+.|++.+...|
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G 424 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQG 424 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHC
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccC
Confidence 3578999999999999999999987544
No 487
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=85.22 E-value=1.1 Score=44.70 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=28.0
Q ss_pred HHHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHHH
Q psy17620 575 VLMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVIN 621 (741)
Q Consensus 575 ~l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~ 621 (741)
-+++++......++..-.. +....+...+.+++++|||||||.++-
T Consensus 40 ~l~~~l~~~g~~~~~~~Q~-~ai~~i~~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 40 SLLRGIYAYGFEKPSAIQQ-RAIIPCIKGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp HHHHHHHHHTCCSCCHHHH-HHHHHHHTTCCEEECCCSSHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHH-HHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 3556666655544432211 222334456779999999999998743
No 488
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=85.19 E-value=0.37 Score=55.81 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=0.0
Q ss_pred EEEEecCCCChhHHHHHHH
Q psy17620 606 TMIVGPTGGGKSVVINALV 624 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~ 624 (741)
+-|+||+||||||++++|+
T Consensus 106 ~~LvGpNGaGKSTLLkiL~ 124 (608)
T 3j16_B 106 LGLVGTNGIGKSTALKILA 124 (608)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHh
No 489
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=85.11 E-value=0.22 Score=48.74 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=21.0
Q ss_pred cceEEEEecCCCChhHHHHHHHHH
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a 626 (741)
+.-|+|+|++|+||||+++.|...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 457899999999999999998764
No 490
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=85.10 E-value=1.6 Score=43.22 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=28.4
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHHH
Q psy17620 576 LMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVIN 621 (741)
Q Consensus 576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~ 621 (741)
+.+++.+....++..- =.+....+...+.+++.+|||||||.++-
T Consensus 36 l~~~l~~~~~~~~~~~-Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 36 TLKGLQEAQYRLVTEI-QKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp HHHHHHHTTCCBCCHH-HHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred HHHHHHHCCCCCCCHH-HHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 4566666555444321 11233445567789999999999998744
No 491
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=85.06 E-value=0.59 Score=53.36 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=26.0
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCe
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPA 634 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~ 634 (741)
.-|++.|++||||||+.+.|++.+...|.++
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~ 403 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKV 403 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeE
Confidence 4588999999999999999999887656443
No 492
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=85.06 E-value=0.39 Score=50.30 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHHH
Q psy17620 605 STMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a 626 (741)
-|.|+|+||+||||+++.|...
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999864
No 493
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=85.03 E-value=2.4 Score=41.31 Aligned_cols=66 Identities=12% Similarity=0.106 Sum_probs=35.4
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHhhccceEEEEecCCCChhHHHHHHHHHh-ccCCCCeEEEEeCCC
Q psy17620 576 LMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS-TVLGYPARTYTLNPK 642 (741)
Q Consensus 576 l~ral~~~~lPkl~~~Dv~qL~e~l~~r~gv~lvGp~gsGKTt~~~~L~~a~-~~~~~~~~~~~inpk 642 (741)
+++++.+....++..-. .+..+.+.....+++.+|||||||.++-..+... ........+.++-|.
T Consensus 25 l~~~l~~~g~~~~~~~Q-~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 91 (220)
T 1t6n_A 25 LLRAIVDCGFEHPSEVQ-HECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 91 (220)
T ss_dssp HHHHHHHTTCCCCCHHH-HHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred HHHHHHHCCCCCCCHHH-HHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCC
Confidence 45666665554333211 1222333445679999999999998765433322 111122355566564
No 494
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=85.02 E-value=0.54 Score=46.59 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=39.1
Q ss_pred EEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccccccccc
Q psy17620 606 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGV 652 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~ 652 (741)
|.+.|..|+||||+.-.|+.++...|.++-....+|. -+...++|.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l~~~lg~ 48 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGL 48 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCHHHHTTC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cChHHHhCC
Confidence 4558999999999999999999999999999999996 555666654
No 495
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=84.97 E-value=0.39 Score=49.40 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.1
Q ss_pred eEEEEecCCCChhHHHHHHHHH
Q psy17620 605 STMIVGPTGGGKSVVINALVKT 626 (741)
Q Consensus 605 gv~lvGp~gsGKTt~~~~L~~a 626 (741)
-|+|+|++|+||||+++.|...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred eEEEEeCCCCCHHHHHHHHHCC
Confidence 5899999999999999999764
No 496
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=84.94 E-value=0.34 Score=52.26 Aligned_cols=22 Identities=45% Similarity=0.688 Sum_probs=19.3
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q psy17620 604 HSTMIVGPTGGGKSVVINALVK 625 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~ 625 (741)
-.|+|+|++|+||||+++.|..
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHhC
Confidence 3589999999999999999754
No 497
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=84.92 E-value=0.55 Score=46.20 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=23.2
Q ss_pred cceEEEEecCCCChhHHHHHHHHHhc
Q psy17620 603 RHSTMIVGPTGGGKSVVINALVKTST 628 (741)
Q Consensus 603 r~gv~lvGp~gsGKTt~~~~L~~a~~ 628 (741)
+..|.|.|++||||||+-+.|++.++
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999999874
No 498
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=84.83 E-value=0.73 Score=49.50 Aligned_cols=37 Identities=24% Similarity=0.226 Sum_probs=26.9
Q ss_pred ccceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEE
Q psy17620 602 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT 638 (741)
Q Consensus 602 ~r~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~ 638 (741)
....+.|+|||||||||+...++......|.++.+..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4567899999999999998888766544454444433
No 499
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=84.78 E-value=0.41 Score=51.77 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.5
Q ss_pred EEEEecCCCChhHHHHHHHHHh
Q psy17620 606 TMIVGPTGGGKSVVINALVKTS 627 (741)
Q Consensus 606 v~lvGp~gsGKTt~~~~L~~a~ 627 (741)
|.|+|+||+||||+++.|....
T Consensus 182 V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 8899999999999999998653
No 500
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=84.78 E-value=0.72 Score=48.74 Aligned_cols=48 Identities=21% Similarity=0.158 Sum_probs=41.1
Q ss_pred ceEEEEecCCCChhHHHHHHHHHhccCCCCeEEEEeCCCcccccccccc
Q psy17620 604 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGV 652 (741)
Q Consensus 604 ~gv~lvGp~gsGKTt~~~~L~~a~~~~~~~~~~~~inpka~t~~eLyG~ 652 (741)
.-++..|..|+||||+.-.|+.++...|.++-....+| +-+...+||.
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l~~~l~~ 62 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP-AHSLSDSLER 62 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS-SCCHHHHHTS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC-CcCHHHHhCC
Confidence 45677899999999999999999998899999999999 6676777764
Done!