RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17620
(741 letters)
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 636 bits (1643), Expect = 0.0
Identities = 135/497 (27%), Positives = 213/497 (42%), Gaps = 94/497 (18%)
Query: 312 AKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEY 371
+ W ++Y K LD +S+ I Q +Y +EY
Sbjct: 574 CSTKEEARLLWAKVQKFYQKNDTLDDLNSVFISQS---------------GYLLQYKFEY 618
Query: 372 MGLNGRLVITPLTDRIYLTITQALSMRLGAAPAG-------------------------- 405
+G+ RL+ TPL + T+T +L + G G
Sbjct: 619 IGIPERLIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNC 678
Query: 406 ---MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFE 462
D+ ++L G++Q GAWGCFDEFNR+D VLS +S + I+ L + +
Sbjct: 679 DDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLL 738
Query: 463 GHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEA 522
+ ++ +FIT+NPGY GR+ELPE++K FR P I +++L GF ++
Sbjct: 739 EEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQIMGFEDS 798
Query: 523 KVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQLEESVVLMRALRD 582
K LA K+ +L + S HY FG+R LK VL L E ++ +L+
Sbjct: 799 KSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISE--FGEGEKTVVESLKR 856
Query: 583 MNLPKFVSED----------------------------------------------VVQM 596
+ LP D +Q
Sbjct: 857 VILPSLGDTDELVFKDELSKIFDSAGTPLNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQF 916
Query: 597 YETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL-GYPARTYTLNPKAVSVIELYGVLNP 655
Y T+ + ++VG G GK+ ++ + G+ Y ++ K ++ LYG +
Sbjct: 917 YYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLYGSMLK 976
Query: 656 ETRDWYDGLLSNIFRAVNKPLDPGSK-ERKYILFDGDVDALWIENMNSVMDDNKILTLAN 714
T +W DGL ++I R VN + K R +++FD D+D ++E MNSV+DDNKILTL N
Sbjct: 977 ATLEWRDGLFTSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPN 1036
Query: 715 GERIRLLAHCQLLFEIH 731
GER+ + + ++LFE
Sbjct: 1037 GERLPIPPNFRILFETD 1053
Score = 115 bits (289), Expect = 3e-26
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 232 IMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDEL 291
I + IE +PN L+ D L+ + SL +L +R FPRF+F+ +D+L
Sbjct: 342 ITTRAFQLDTTIEVIHIPNFDTTLKLTIDSLKMIKSSLSTFLERQRRQFPRFYFLGNDDL 401
Query: 292 LSILGSSS-PTAIQEHIVK 309
L I+GS + + + K
Sbjct: 402 LKIIGSGKHHDQVSKFMKK 420
Score = 90.3 bits (224), Expect = 1e-18
Identities = 18/163 (11%), Positives = 45/163 (27%), Gaps = 39/163 (23%)
Query: 1 MDFRTPQLTFG--EIEQWMTRVLDEMMT----------ENLVCSCQMTEWMLDNIGMTVL 48
++ + ++W+ + E+ + + + I +L
Sbjct: 446 LNLNEKIELKDSIQAQEWLNILDTEIKLSVFTQFRDCLGQIKDGTDIEVVVSKYIFQAIL 505
Query: 49 AANGVWWTAEVENVFAKIRAGNDRAMKDYLGAQNAQLDALVVKVRGELTKNDRKKFNTVL 108
+ V WT VE Y + ++ L+ K+
Sbjct: 506 LSAQVMWTELVEKCLQT------NQFSKYWKEVDMKIKGLLDKLN--------------- 544
Query: 109 IVDVRGELTKNDRKKFNTVLIVDVHARDIIDNFIGSDSLSPRS 151
+ + N +KK +L+ +H ++I +
Sbjct: 545 ------KSSDNVKKKIEALLVEYLHFNNVIGQLKNCSTKEEAR 581
Score = 49.5 bits (118), Expect = 4e-06
Identities = 24/148 (16%), Positives = 40/148 (27%), Gaps = 22/148 (14%)
Query: 474 IFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQI--------MLFSEGFLE-AKV 524
+ P GR + E + P + + QI F +
Sbjct: 1388 VGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEP 1447
Query: 525 LAKKMAVLYKLSKEQLS--KQCHYDFGMRALKSVLVMAGELKRAALQLEESVVL------ 576
A+ LY K + S Q HY F R L ++ + ++
Sbjct: 1448 FARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYE 1507
Query: 577 -MRALRDMNLPKFVSEDVVQMYETMLTR 603
R D + V +E +L
Sbjct: 1508 AWRIFAD----RLVGVKEKNSFEQLLYE 1531
Score = 44.8 bits (106), Expect = 1e-04
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 155 GELTKNDRKKFNTVLIVDVHARDIIDNFVRDGS 187
+ + N +KK +L+ +H ++I +
Sbjct: 544 NKSSDNVKKKIEALLVEYLHFNNVIGQLKNCST 576
Score = 39.1 bits (91), Expect = 0.007
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 191 GELTKNDRKKFNTVLIVDVHAREIKDNFIGSNSLS 225
+ + N +KK +L+ +H + ++
Sbjct: 544 NKSSDNVKKKIEALLVEYLHFNNVIGQLKNCSTKE 578
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 562 bits (1449), Expect = e-177
Identities = 182/523 (34%), Positives = 272/523 (52%), Gaps = 113/523 (21%)
Query: 313 KIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYM 372
+ ++F W +RYY+ + + LVI N +F YG+EY+
Sbjct: 534 NLTGNKDFDWLYHMRYYYDATQENVLHKLVIHMA---------------NATFYYGFEYL 578
Query: 373 GLNGRLVITPLTDRIYLTITQALSMRLGAAPAG--------------------------- 405
G+ RLV TPLTDR YLT+TQAL R+G P G
Sbjct: 579 GIGERLVQTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCD 638
Query: 406 --MDFLAFGKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQ-FE 462
D A +I GL QCGAWGCFDEFNR++ +LS +S Q+ TI+ AL N+ +
Sbjct: 639 EGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLG 698
Query: 463 GHDIIMNNKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEA 522
G +I ++ +GIF+TMNPGYAGR+ LP+++K LFR + I PD E+I Q+ML+S+GF A
Sbjct: 699 GKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQGFKTA 758
Query: 523 KVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGELKRAALQ------------- 569
+VLA K+ L+KL +EQLS Q HYDFG+RALKSVLV AG +KR
Sbjct: 759 EVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIKRKCQPPQLPPITDAESKT 818
Query: 570 -------LEESVVLMRALRDMNLPKFVSEDV----------------------------- 593
E VL+ ++ D +PK V++D+
Sbjct: 819 KADQIYCQYEIGVLLNSINDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKKIQ 878
Query: 594 ------------------VQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL-GYPA 634
+Q+++ + H M+VGP+GGGK+ ++ + +
Sbjct: 879 EIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKS 938
Query: 635 RTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDA 694
+ ++PKA++ +L+G L+ TR+W DGL + R + + S +R +I+FDGDVD
Sbjct: 939 EAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFDGDVDP 998
Query: 695 LWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEIHPIQSDS 737
W+EN+NS++DDNK+LTL NGER+ L + +++FE+ ++ +
Sbjct: 999 EWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLKYAT 1041
Score = 113 bits (285), Expect = 7e-26
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 232 IMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDEL 291
I+ + P ++E + + +E+L D L +K+L +YL +R+AF RF+F+ D++L
Sbjct: 283 ILKKVSGAPLILEVLAIERIQQTMERLSDLLGKVQKALGEYLERQRSAFARFYFVGDEDL 342
Query: 292 LSILGSSS-PTAIQEHIVK 309
L I+G+S IQ+H K
Sbjct: 343 LEIIGNSKDIIKIQKHFRK 361
Score = 101 bits (253), Expect = 5e-22
Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 40/166 (24%)
Query: 1 MDFRTPQLT--FGEIEQWMTRVLDEMM---------------TENLVCSCQMTEWMLDNI 43
+ F+ P +I +W+T V EM ++ + +EW+ +
Sbjct: 389 VTFKKPISIANGPKIHEWLTMVESEMKSTLATLLSESLQHFNQVDVNDHSKYSEWVDNYP 448
Query: 44 GMTVLAANGVWWTAEVENVFAKIRAGNDR---AMKDYLGAQNAQLDALVVKVRGELTKND 100
VL + + W+ +V+ + ++ L+ L V +L+
Sbjct: 449 TQLVLLTSQIVWSTQVDQALGGGTLQQSKIQEQLQSIEQTTQMILNNLADSVLQDLSAQK 508
Query: 101 RKKFNTVLIVDVRGELTKNDRKKFNTVLIVDVHARDIIDNFIGSDS 146
RKKF LI + VH RD++ +
Sbjct: 509 RKKFEH-LITE-------------------LVHQRDVVRQLQKCKN 534
Score = 51.8 bits (124), Expect = 9e-07
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 149 PRSVVRGELTKNDRKKFNTVLIVDVHARDIIDNFVR 184
V +L+ RKKF ++ VH RD++ +
Sbjct: 496 LADSVLQDLSAQKRKKFEHLITELVHQRDVVRQLQK 531
Score = 44.5 bits (105), Expect = 2e-04
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 189 VRGELTKNDRKKFNTVLIVDVHAREIKDNFI 219
V +L+ RKKF ++ VH R++
Sbjct: 500 VLQDLSAQKRKKFEHLITELVHQRDVVRQLQ 530
Score = 35.3 bits (81), Expect = 0.085
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 11/90 (12%)
Query: 478 MNPGYAGRTELPESVKALFRPVVCIVPDFELICQI-MLFSEGFLE--------AKVLAKK 528
P AGR +L ++ P + QI F+ ++ A L
Sbjct: 1430 NPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDA 1489
Query: 529 MAVLYKLSKEQL--SKQCHYDFGMRALKSV 556
M Y S+++ Q HY + R L
Sbjct: 1490 MVEFYSESQKRFTPDIQAHYIYSPRELSRW 1519
Score = 31.0 bits (70), Expect = 1.9
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 598 ETMLT-RHSTMIVGPTGGGKSVVINALVK 625
L+ ++ GP G GK++ + + ++
Sbjct: 1298 HAWLSEHRPLILCGPPGSGKTMTLTSTLR 1326
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 82.2 bits (202), Expect = 4e-16
Identities = 52/379 (13%), Positives = 106/379 (27%), Gaps = 106/379 (27%)
Query: 44 GM-----TVLAA-------------NGVWWTAEVENVFAKIRAGNDRAMKDYLGAQNAQL 85
G+ T +A ++W + N + + L L
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFW----------LNLKNCNSPETVL----EML 202
Query: 86 DALVVKVRGELTKNDRKKFNTVL-IVDVRGELTKN-DRKKFNTVLIV--DVHARDIIDNF 141
L+ ++ T N L I ++ EL + K + L+V +V + F
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 142 -IGSDSLSPRSVVRGELTKNDRKKFNTVLIVDVHARDIIDNFVRDGSAVRGELTKNDRKK 200
+ L LT ++ + + I + LT ++ K
Sbjct: 263 NLSCKIL---------LTTRFKQVTDFL--SAATTTHISLDHHSMT------LTPDEVKS 305
Query: 201 -FNTVLIVDVHAREIKDNFIGSNSLSRSLESVIMWETHKNPRVIEQCLV-------PNRL 252
L L R + + NPR + ++
Sbjct: 306 LLLKYLDCRP------------QDLPREVLTT-------NPRRL--SIIAESIRDGLATW 344
Query: 253 EH-----LEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDD-----ELLSILGSSSPTA 302
++ ++L +E+ L+ + R F R LLS++ +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPA--EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 303 IQEHIVKFAAKIMDAEEFQWESQLRYYWKKSYLDWKDSL--------VIIQCSGSFEYGY 354
+V K E + + YL+ K L I+ + +
Sbjct: 403 DVMVVVNKLHKYSLVE--KQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTF 459
Query: 355 EHEYMGLNGSFEYGYEYMG 373
+ + + +Y Y ++G
Sbjct: 460 DSDDLIPPYLDQYFYSHIG 478
Score = 68.3 bits (166), Expect = 6e-12
Identities = 100/672 (14%), Positives = 199/672 (29%), Gaps = 184/672 (27%)
Query: 1 MDFRTP--QLTFGEIEQWMTRVLDEMMTENLVCSCQMTEWMLDNIGMTVLAANGVWWTAE 58
MDF T Q + +I V ++ +N C+ + M +I ++ E
Sbjct: 7 MDFETGEHQYQYKDILS----VFEDAFVDNF--DCKDVQDMPKSI-LS---------KEE 50
Query: 59 VENVFAKIRAGNDRAMKDYLGAQNAQLDALVVKVRGELTKNDR--KKF-NTVLIVD---V 112
++++ I + + + L L L+K + +KF VL ++ +
Sbjct: 51 IDHI---IMSKDAVSGTLRL------FWTL-------LSKQEEMVQKFVEEVLRINYKFL 94
Query: 113 RGELTKNDRKK-FNTVLIVDVHARDIIDNFIGSDSLSPRSVVRGELTKNDRKKFN----- 166
+ R+ T + ++ RD + N + + +V R + R+
Sbjct: 95 MSPIKTEQRQPSMMTRMYIE--QRDRLYN--DNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 167 -------------TVLIVDVHARD--IIDNF------VRDGSAVRGELTKNDRKKFNTVL 205
T + +DV + + + E +K +
Sbjct: 151 KNVLIDGVLGSGKTWVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 206 IVDVHARE--IKDNFIGSNSLSRSLESVIMWETHKN----------PRVIE----QC--L 247
+ +R + + +S+ L ++ + ++N + C L
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 248 VPNRLEHLEQLKDGLEACEKSLQDY---LTDK--RNAFPRFFFISDDELLSILGSSSPTA 302
+ R + + SL + LT ++ ++ +L + +++P
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 303 IQEHIVKFAAKIMDAEEFQWESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEYMGLN 362
+ A I D W+ WK K + +I S EY +
Sbjct: 330 LS----IIAESIRDGLA-TWD-----NWKH-VNCDKLTTII---ESSLNVLEPAEYRKM- 374
Query: 363 GSFEYGYEYMGLNGRLVITPLTDRIYLTITQALSMRLGAAPAGMDFLAFGKILSGLSQCG 422
++ RL + P ++ T LS+ + D + L S
Sbjct: 375 ------FD------RLSVFP--PSAHIP-TILLSL-IWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 423 AWGCFDEFNRIDVSVLSVISTQLLTIRTAL---LINATRFQ--FEGHDIIMNNKVGIF-- 475
E I + + + L AL +++ F+ D+I F
Sbjct: 419 KQP--KES-TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 476 -ITMNPGY----AGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVLAKKMA 530
I G+ E + +F DF FLE K+ A
Sbjct: 476 HI----GHHLKNIEHPERMTLFRMVFL-------DF-----------RFLEQKIRHDSTA 513
Query: 531 ---------VLYKLS--KEQLSKQC-HYDFGMRALKSVLVMAGE---------LKRAALQ 569
L +L K + Y+ + A+ L E L R AL
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573
Query: 570 LEESVVLMRALR 581
E+ + A +
Sbjct: 574 AEDEAIFEEAHK 585
Score = 54.5 bits (130), Expect = 1e-07
Identities = 74/555 (13%), Positives = 156/555 (28%), Gaps = 202/555 (36%)
Query: 252 LEHLEQ-LKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSSPT--------- 301
L E D + C K +QD ++ S +E+ I+ S
Sbjct: 22 LSVFEDAFVDNFD-C-KDVQDMP---KSIL------SKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 302 --AIQEHIVKFAAKIMDAEEFQW-ESQLRYYWKKSYLDWKDSLVIIQCSGSFEYGYEHEY 358
+ QE +V+ + + +++ S ++ ++ + + Y + +
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR------------MYIEQRDR 118
Query: 359 MGLNGSFEYGYEYMGLNGRLVITPLT-DRI--YLTITQALSMRLGAAPA----GMDFLAF 411
+ N V R+ YL + QAL + L A G+ L
Sbjct: 119 L--------------YNDNQVFAKYNVSRLQPYLKLRQAL-LELRPAKNVLIDGV--LGS 161
Query: 412 GKILSGLSQCGAWGCFDEFNRIDVSVLSVISTQLLTIRTALLINATRFQFEGH------- 464
GK + ++ L + + + F+
Sbjct: 162 GK----------------------TWVA-----LDVCLSYKVQ--CKMDFKIFWLNLKNC 192
Query: 465 ---DIIMNNKVGIFITMNPGYAGRTELP-------ESVKALFRPV--------------- 499
+ ++ + ++P + R++ S++A R +
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 500 VC---IVPDFELICQIMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSV 556
V F L C+I+ + + V DF A +
Sbjct: 253 VQNAKAWNAFNLSCKIL----------LTTRFKQVT--------------DFLSAATTTH 288
Query: 557 LVMAGELKRAALQLEESVVLMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGK 616
+ + + L +E L L K++ + +LT + +
Sbjct: 289 ISL--DHHSMTLTPDEVKSL--------LLKYLDCRPQDLPREVLTTNPRRL-------- 330
Query: 617 SVVINALVKTSTVLGYPART----YTLNPKAVSVIEL-YGVLNP-ETRDWYDGLLSNIFR 670
+I ++ A + K ++IE VL P E R +D L ++F
Sbjct: 331 -SIIAESIR-----DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL--SVFP 382
Query: 671 A-VNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQ---L 726
+ P +L +W + + + ++ + N L Q
Sbjct: 383 PSAHIPTI--------LL-----SLIWFD-----VIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 727 LFEIHPIQSDSHPRR 741
I I + +
Sbjct: 425 TISIPSIYLELKVKL 439
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 9e-07
Identities = 100/599 (16%), Positives = 170/599 (28%), Gaps = 255/599 (42%)
Query: 121 RKKFNTVLIVDVHARDIIDNFIGSDSLSPRSVVRGELT------------KNDRKKFNTV 168
+++FN +L + F D P + EL + +F+ V
Sbjct: 34 QEQFNKILPEPT------EGFAADDE--PTTPA--ELVGKFLGYVSSLVEPSKVGQFDQV 83
Query: 169 LIV-------------DVHA----------------RDIIDNFVRDGSAVRGELTKNDRK 199
L + D+HA +++I N++ R + K
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT----ARIMAKRPFDK 139
Query: 200 KFNTVLIVDVHAREIKDNFI------GSNS-----LSRSLESVIMWETHKNPRVIEQCLV 248
K N+ L V + + G+ L R L ++T+ V + L+
Sbjct: 140 KSNSALFRAVGEGNAQ--LVAIFGGQGNTDDYFEEL-RDL-----YQTYH-VLVGD--LI 188
Query: 249 PNRLEHLEQLKDGLEACEKSL------------------QDYLTDKRNAFP--------- 281
E L +L EK +DYL + P
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 282 -----RFFFISDDELLSILGSSSPTAIQEHIVKFAAKIMDAEEFQWESQLRYYWKKSYLD 336
+ + EL S L + T + +V A + AE WES + +
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGA--TGHSQGLV--TAVAI-AETDSWESFFVSV--RKAIT 301
Query: 337 WKDSLVIIQCSGSFEYGYE-HEYMG--------LNGSFEYGYE----YM----GL----- 374
F G +E L S E E M L
Sbjct: 302 V-----------LFFIGVRCYEAYPNTSLPPSILEDSLENN-EGVPSPMLSISNLTQEQV 349
Query: 375 -------NGRLVITPLTDRIYLT---------IT---QAL-----SMRLGAAPAGMDFLA 410
N L P ++ ++ ++ Q+L ++R AP+G+D
Sbjct: 350 QDYVNKTNSHL---PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD--- 403
Query: 411 FGKILSGLSQCGAWGCFDEFNRIDVSV-LSVISTQLLTIRTA-----LLINATR------ 458
Q +RI S S + L + + LL+ A+
Sbjct: 404 ---------Q----------SRIPFSERKLKFSNRFLPV-ASPFHSHLLVPASDLINKDL 443
Query: 459 ----FQFEGHDIIMNNKVGIFITMNPGY---AGRTELPES-VKALFR-PVVCIVPDFELI 509
F DI ++ ++ T + G + E V + R PV +E
Sbjct: 444 VKNNVSFNAKDI----QIPVYDTFD-GSDLRVLSGSISERIVDCIIRLPV-----KWETT 493
Query: 510 CQ-----IMLFSEGFLEAKVLAKKMAVLYKLSKEQLSKQCHYDFGMRALKSVLVMAGEL 563
Q I+ F G + L L+ G+R +++AG L
Sbjct: 494 TQFKATHILDFGPG---------GASGLGVLTHRNKDGT-----GVR-----VIVAGTL 533
Score = 48.9 bits (116), Expect = 6e-06
Identities = 101/609 (16%), Positives = 166/609 (27%), Gaps = 201/609 (33%)
Query: 185 DGSAVR------GELTKNDRKKFNTVLIVD----VHAREIKDNFIGSNSLSRSLESVIMW 234
D + R G L VL+V A ++++ F + L E
Sbjct: 2 DAYSTRPLTLSHGSLE--------HVLLVPTASFFIASQLQEQF--NKILPEPTEGF--- 48
Query: 235 ETHKNPR-VIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDD--EL 291
P E LV L ++ L + + L F + +D L
Sbjct: 49 AADDEPTTPAE--LVGKFLGYVSSLVE--PSKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 292 LSILGSSSPTAI--QEHIVK--FAAKIMDAEEFQWESQ---LR---------Y------- 328
+ L + T + + ++K A+IM F +S R
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 329 ----YWK------KSYLDWKDSLVIIQCSGSFEYGYEHEYMGLNGSFEYGYEYMG-LNGR 377
Y++ ++Y L I + + + F G + L
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDL-IKFSAETLSELIRTT-LDAEKVFTQGLNILEWLENP 222
Query: 378 LVITPLTDRIYL----------TITQALSMRLGAAPAGMDFLAFGKILSGLSQCGA---- 423
TP D+ YL + Q + A G L G +
Sbjct: 223 -SNTP--DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 424 ---------WGCFDEFNRIDVSVLSV-----ISTQLLTIRTALLINATRFQFEGHDIIMN 469
W + F ++V + T+L + D + N
Sbjct: 280 AVAIAETDSW---ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE------DSLEN 330
Query: 470 NKVGIFITMNPGYAGRTELPESVKALFRPVVCIVPDFELICQIMLFSEGFLEAKVL---- 525
N+ G+ P L S+ L + ++ + + K +
Sbjct: 331 NE-GV-----PSPM----L--SISNLTQE--------QVQDYVNKTNSHLPAGKQVEISL 370
Query: 526 --AKKMAV-------LYKLSKEQLSK--------QCHYDFGMRALK-------------S 555
K V LY L+ L K Q F R LK S
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNL-TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS 429
Query: 556 VLVMAGELKRAALQLEESVVLMRALRDMNLPKF--------------VSEDVVQM----- 596
L + L ++ V A +D+ +P + +SE +V
Sbjct: 430 HL-LVPASDLINKDLVKNNVSFNA-KDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Query: 597 --YETMLTRHSTMIV--GPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGV 652
+ET +T I+ GP GG S + L G V VI + G
Sbjct: 488 VKWETTTQFKATHILDFGP--GGAS-GLGVLTH-RNKDG----------TGVRVI-VAGT 532
Query: 653 LNPETRDWY 661
L+ D Y
Sbjct: 533 LDINPDDDY 541
Score = 33.9 bits (77), Expect = 0.23
Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 31/128 (24%)
Query: 603 RHSTMIVGPTGGGKSVVINALV---KTSTVLGYPARTYTLNPKAVSVIELYG-------- 651
H ++ PT + A + + +L P + + + + EL G
Sbjct: 17 EHVLLV--PT----ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 652 VLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILT 711
++ P +D +L+ E Y L D+ AL ++ +N
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEF---------ENCY-LEGNDIHAL----AAKLLQENDTTL 116
Query: 712 LANGERIR 719
+ E I+
Sbjct: 117 VKTKELIK 124
Score = 29.6 bits (66), Expect = 5.3
Identities = 36/246 (14%), Positives = 69/246 (28%), Gaps = 94/246 (38%)
Query: 2 DFRTPQLTF-GEIEQWMTRVLDEMMTEN-----LVCSCQMTEWMLDNIGMTVLAANGVWW 55
+ + TF E +L T+ + E L + G+
Sbjct: 1711 NEHSTSYTFRSEKG-----LLSA--TQFTQPALTLMEKAAFE---------DLKSKGL-- 1752
Query: 56 TAEVENVFAKIRAG--NDRAMKDYLG-----AQNAQL----DAL-VVKVRGELTKNDRKK 103
+ FA G LG A A + + VV RG +
Sbjct: 1753 -IPADATFA----GHS--------LGEYAALASLADVMSIESLVEVVFYRGMTMQV---- 1795
Query: 104 FNTVLIVDVRGELTKNDRKKF--NTVLIVDVHARDIIDNFIGSDSLSPRS-----VVRGE 156
R EL +++ N + +++ + + + + R+ +V
Sbjct: 1796 ------AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV--ERVGKRTGWLVEIV--- 1844
Query: 157 LTKNDRKKFNT--VLIV---DVHARDIIDNFVRDGSAVRGELTKNDRKKFNTV-LIVDVH 210
N +N V D+ A D + N L +K + + L +
Sbjct: 1845 ---N----YNVENQQYVAAGDLRALDTVTNV----------LNFIKLQKIDIIELQKSLS 1887
Query: 211 AREIKD 216
E++
Sbjct: 1888 LEEVEG 1893
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.32
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 27/53 (50%)
Query: 256 EQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSSPT-AIQEHI 307
+ LK L+A SL+ Y +DD S+P AI+ +
Sbjct: 20 QALKK-LQA---SLKLY--------------ADD--------SAPALAIKATM 46
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 32.9 bits (75), Expect = 0.37
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 594 VQMYETMLTRHSTMIVGPTGGGKSVVINALVKT 626
V M RH ++ G TG GKSV++ L T
Sbjct: 45 VPMPRDAEPRH-LLVNGATGTGKSVLLRELAYT 76
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 31.3 bits (70), Expect = 1.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 607 MIVGPTGGGKSVVINALVKTS 627
M+VG +G GKS +IN+L T
Sbjct: 22 MVVGESGLGKSTLINSLFLTD 42
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 30.9 bits (69), Expect = 1.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 607 MIVGPTGGGKSVVINALVKTS 627
M+VG +G GKS +IN+L T
Sbjct: 12 MVVGESGLGKSTLINSLFLTD 32
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 31.1 bits (70), Expect = 1.5
Identities = 9/51 (17%), Positives = 15/51 (29%)
Query: 601 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYG 651
T + I+ G GKS L+ + G + + G
Sbjct: 33 RTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREYKEMCRKLG 83
>1p9r_A General secretion pathway protein E; bacterial type II secretion
system cytoplasmic protein - GSPE, putative ATPase/ ATP
binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11
PDB: 1p9w_A*
Length = 418
Score = 31.0 bits (71), Expect = 1.6
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 572 ESVVLMRAL----RDMNLPKF-VSEDVVQMYETMLTRHSTMI--VGPTGGGKSV 618
E VV MR L ++L ++ + ++ R +I GPTG GKS
Sbjct: 130 ERVV-MRLLDKNATRLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKST 182
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 31.0 bits (71), Expect = 1.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 608 IVGPTGGGKSVVINAL 623
+VGPTG GK+ ++N L
Sbjct: 386 LVGPTGSGKTTIVNLL 401
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 30.6 bits (70), Expect = 1.7
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 598 ETMLTRHSTMIVGPTGGGKSVVINALV 624
+ L + + G +G GKS ++NA+
Sbjct: 164 KEYLKGKISTMAGLSGVGKSSLLNAIN 190
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 30.8 bits (70), Expect = 1.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 608 IVGPTGGGKSVVINAL 623
++G TG GKS +++A
Sbjct: 52 LLGRTGSGKSTLLSAF 67
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition
domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus
fulgidus} SCOP: c.37.1.19
Length = 237
Score = 30.4 bits (69), Expect = 2.0
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 597 YETMLTRHSTMIVGPTGGGKSVVINALV---KTST 628
E L IV PTG GK+ V A + T T
Sbjct: 102 LERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPT 136
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 30.2 bits (69), Expect = 2.0
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 598 ETMLTRHSTMIVGPTGGGKSVVINALV 624
+T+ G +G GKS ++NA+
Sbjct: 168 IPHFQDKTTVFAGQSGVGKSSLLNAIS 194
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 30.6 bits (70), Expect = 2.0
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 608 IVGPTGGGKSVVINAL-----VKTSTVL--GYPARTYTLN 640
VG +GGGKS +IN + V + +L G+ + +
Sbjct: 372 FVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTG 411
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 30.2 bits (69), Expect = 2.1
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 598 ETMLTRHSTMIVGPTGGGKSVVINALV 624
L ++ GP+G GKS +++ L
Sbjct: 160 VDYLEGFICILAGPSGVGKSSILSRLT 186
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 30.4 bits (69), Expect = 2.8
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 579 ALRDMNLPKFVSEDVVQMYET---MLTRHST-------MIVGPTGGGKSVVINAL 623
A++ +NLP + V Y L R T +VG G GKS + L
Sbjct: 69 AIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKIL 123
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 29.9 bits (67), Expect = 2.8
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 591 EDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST 628
V++ +VG T GKS IN +++ +T
Sbjct: 150 AKVMEAINRYREGGDVYVVGCTNVGKSTFINRIIEEAT 187
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 29.4 bits (67), Expect = 3.3
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 608 IVGPTGGGKSVVINAL-----VKTSTVL--GYPARTYTLN 640
GP+GGGKS + + L + G P +L
Sbjct: 33 FAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE 72
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 29.9 bits (68), Expect = 3.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 598 ETMLTRHSTMIVGPTGGGKSVVINALV 624
E LT ++ G +G GKS ++NAL+
Sbjct: 210 EEALTGRISIFAGQSGVGKSSLLNALL 236
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 29.4 bits (67), Expect = 3.5
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 600 MLTRHSTMIV--GPTGGGKSVVINALVK 625
M +IV GP+G GK V + +
Sbjct: 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFE 28
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A*
1us8_A*
Length = 149
Score = 28.9 bits (65), Expect = 3.7
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 601 LTRHSTMIVGPTGGGKSVVINAL 623
+I+G G GKS +++A+
Sbjct: 21 FKEGINLIIGQNGSGKSSLLDAI 43
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 29.9 bits (68), Expect = 4.1
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 608 IVGPTGGGKSVVINAL-----VKTSTVL--GYPARTYTLN 640
+VG +G GKS + + + + +L G+ R YTL
Sbjct: 374 LVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLA 413
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 29.5 bits (67), Expect = 4.6
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Query: 608 IVGPTGGGKSVVINAL-----VKTSTVL--GYPARTYTLN 640
+VG +G GKS + N V + ++ G+ R Y L
Sbjct: 374 LVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLT 413
>3ngm_A Extracellular lipase; secret lipase, hydrolase; 2.80A {Gibberella
zeae}
Length = 319
Score = 29.2 bits (65), Expect = 4.7
Identities = 16/92 (17%), Positives = 23/92 (25%), Gaps = 19/92 (20%)
Query: 589 VSEDVVQMYETMLTRHSTMIVGPTG---GGKSVVINALVKTSTVLGYPARTYTLNPKAVS 645
+S + + V G GG + + G P YT
Sbjct: 118 ISAAATAAVAKARKANPSFKVVSVGHSLGGAVATLAGA--NLRIGGTPLDIYT------- 168
Query: 646 VIELYG---VLNPETRDWYDGLLSNIFRAVNK 674
YG V N + + FR N
Sbjct: 169 ----YGSPRVGNTQLAAFVSNQAGGEFRVTNA 196
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 29.4 bits (66), Expect = 4.8
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 598 ETMLTRHSTMIVGPTGGGKSVVINALVKT 626
E L IV PTG GK+ V A +
Sbjct: 103 ERWLVDKRGCIVLPTGSGKTHVAMAAINE 131
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 29.3 bits (66), Expect = 4.9
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 607 MIVGPTGGGKSVVINALV 624
++ G TG GKSV +NA++
Sbjct: 218 LVAGTTGSGKSVGVNAML 235
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- binding, cell division, transmembrane,
inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB:
2j5p_A*
Length = 512
Score = 29.2 bits (66), Expect = 5.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 607 MIVGPTGGGKSVVINALV 624
++ G TG G SV +NA++
Sbjct: 171 LVAGTTGSGASVGVNAMI 188
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 28.4 bits (64), Expect = 6.4
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 601 LTRHSTMIVGPTGGGKSVVINAL 623
+I+G G GKS +++A+
Sbjct: 21 FKEGINLIIGQNGSGKSSLLDAI 43
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 29.1 bits (64), Expect = 6.8
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 600 MLTRHSTMIVGPTGGGKS-VVINALVK-TSTVLGYPAR 635
+ R GPT GK+ I S V P +
Sbjct: 152 AMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLK 189
>3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A
3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A*
3poc_A*
Length = 666
Score = 28.9 bits (65), Expect = 6.8
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 22/64 (34%)
Query: 653 LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMN--SVMDDNKIL 710
LNPE R W+ L D ++ W +MN ++ ++ L
Sbjct: 284 LNPEARKWFGDKYRF-------------------LIDQGIEGFWN-DMNEPAIFYSSEGL 323
Query: 711 TLAN 714
A
Sbjct: 324 AEAK 327
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 28.7 bits (65), Expect = 6.9
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 608 IVGPTGGGKSVVINAL 623
+VGP+G GKS ++ L
Sbjct: 85 LVGPSGAGKSTILRLL 100
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 28.3 bits (64), Expect = 7.6
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 599 TMLTRHSTMIV--GPTGGGKSVVINALVK 625
+ML ++V P+G GK+ V N L++
Sbjct: 21 SMLKSVGVILVLSSPSGCGKTTVANKLLE 49
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 28.8 bits (64), Expect = 8.0
Identities = 11/46 (23%), Positives = 17/46 (36%)
Query: 591 EDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPART 636
++ E +VG T GKS IN ++K + T
Sbjct: 148 AELADAIEYYRGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVIT 193
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 28.8 bits (65), Expect = 8.0
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 579 ALRDMNLPKFVSEDVVQMY-ETMLTRHSTM---------IVGPTGGGKSVVINAL 623
A+ +NLP+ + ED V Y + IVGP G GK+ + L
Sbjct: 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKIL 137
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 28.5 bits (63), Expect = 8.5
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 571 EESVVLMRALRDMNLPKFVS--EDVVQMYETMLTRHSTMIVGPTGGGKSVVINAL 623
E ++ +R N+ S D ++ ++ + + + G TG GKS IN L
Sbjct: 37 EILNLIELRMRAGNIQLTNSAISDALKEIDS--SVLNVAVTGETGSGKSSFINTL 89
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2
function project, S2F, structural genomics, transferase;
HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Length = 206
Score = 27.9 bits (63), Expect = 9.0
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 606 TMIVGPTGG---GKSVVINALVKTSTVLGYP 633
T IVG TGG GK+ + N LG P
Sbjct: 2 TYIVGLTGGIGSGKTTIANLFTD----LGVP 28
>3kta_A Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xex_A* 1xew_X*
Length = 182
Score = 27.9 bits (63), Expect = 9.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 606 TMIVGPTGGGKSVVINAL 623
T IVG G GKS + +A+
Sbjct: 29 TAIVGANGSGKSNIGDAI 46
>1tgl_A Triacyl-glycerol acylhydrolase; carboxylic esterase; 1.90A
{Rhizomucor miehei} SCOP: c.69.1.17 PDB: 4tgl_A 5tgl_A*
3tgl_A
Length = 269
Score = 28.3 bits (63), Expect = 9.1
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 14/92 (15%)
Query: 589 VSEDVVQMYETMLTRHSTMIVGPTG---GGKSVVINALVKTSTVLGYPARTYTLNPKAVS 645
V ++V ++ + V TG GG + ++ AL R L+ +
Sbjct: 118 VQNELVATVLDQFKQYPSYKVAVTGHSLGGATALLCALD-------LYQREEGLSSSNLF 170
Query: 646 VIELYG---VLNPETRDWYDGLLSNIFRAVNK 674
+ G V NP ++ R VN+
Sbjct: 171 LY-TQGQPRVGNPAFANYVVSTGIPYRRTVNE 201
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat,
microtubule plus END, +TIP, protein binding; 1.70A
{Saccharomyces cerevisiae}
Length = 249
Score = 28.1 bits (62), Expect = 9.1
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 213 EIKDNFIGSNSLSRSLESVIMWETHKNPRVIEQCL 247
+ D S L+ ++ HK P++ +C
Sbjct: 133 KYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECT 167
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 28.4 bits (64), Expect = 9.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 606 TMIVGPTGGGKSVVINAL 623
T IVGP G GKS +I+A+
Sbjct: 27 TAIVGPNGSGKSNIIDAI 44
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix,
helix-turn-helix, ATP binding, Zn(2+) binding,
hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43
c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Length = 523
Score = 28.6 bits (65), Expect = 9.6
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Query: 591 EDVVQMYETMLTRHSTMIVGPTGGGKSV 618
E+++ +T+L+ ++V PTGGGKS+
Sbjct: 31 EEII---DTVLSGRDCLVVMPTGGGKSL 55
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 27.9 bits (63), Expect = 9.9
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 608 IVGPTGGGKSVVINAL 623
+VG TG GKS + L
Sbjct: 51 LVGHTGSGKSTIAKLL 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.404
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,540,683
Number of extensions: 728369
Number of successful extensions: 1795
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1768
Number of HSP's successfully gapped: 88
Length of query: 741
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 640
Effective length of database: 3,881,772
Effective search space: 2484334080
Effective search space used: 2484334080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.5 bits)