RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17620
(741 letters)
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 36.1 bits (82), Expect = 0.016
Identities = 23/142 (16%), Positives = 39/142 (27%), Gaps = 17/142 (11%)
Query: 594 VQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLG----------------YPARTY 637
V M RH ++ G TG GKSV++ L T + G +
Sbjct: 42 VPMPRDAEPRH-LLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLSKFGRDKDI 100
Query: 638 TLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWI 697
LNP + ++ +L L +
Sbjct: 101 ILNPYDQRTKGWSFFNEIRNDYDWQRYALSVVPRGKTDEAEEWASYGRLLLRETAKKLAL 160
Query: 698 ENMNSVMDDNKILTLANGERIR 719
S+ + T+A + +R
Sbjct: 161 IGTPSMRELFHWTTIATFDDLR 182
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 33.4 bits (75), Expect = 0.086
Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 3/114 (2%)
Query: 601 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDW 660
++ T IVG G GKS + +A+ VLG + + +I P +
Sbjct: 24 FSKGFTAIVGANGSGKSNIGDAI---LFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYA 80
Query: 661 YDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLAN 714
+ N + R+ + DG + + ILT A
Sbjct: 81 EVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAM 134
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 33.5 bits (75), Expect = 0.095
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 606 TMIVGPTGGGKSVVINALVKTSTVLGYPART 636
T I+GP G GKS +++A+ S VLG +
Sbjct: 28 TSIIGPNGSGKSNMMDAI---SFVLGVRSNH 55
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 31.2 bits (69), Expect = 0.47
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 601 LTRHSTMIVGPTGGGKSVVINAL 623
+ T IVGP G GKS +I+A+
Sbjct: 22 FSDRVTAIVGPNGSGKSNIIDAI 44
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 30.0 bits (66), Expect = 0.72
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 608 IVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 643
+ GP+ GKS V+ L + L + T P+
Sbjct: 7 LSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRP 42
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 30.0 bits (66), Expect = 0.81
Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 3/47 (6%)
Query: 601 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI 647
L T + G G GKS + A T L +
Sbjct: 22 LDELVTTLSGGNGAGKSTTMAAF---VTALIPDLTLLHFRNTTEAGA 65
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 28.8 bits (63), Expect = 1.8
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 608 IVGPTGGGKSVVINALVKTSTVLG-YPARTYTLNPKAVSVIELYGVLNPETRDWYDGL 664
+VG GKS ++ A+ + + YP T + N V V E + +G
Sbjct: 6 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 28.9 bits (64), Expect = 1.8
Identities = 11/110 (10%), Positives = 29/110 (26%), Gaps = 15/110 (13%)
Query: 591 EDVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELY 650
++ + L + + G +G GKS ++NA+ + + +
Sbjct: 83 GMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL 142
Query: 651 GVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENM 700
+ D PG + + + + +
Sbjct: 143 LKFDFGG-YVVDT--------------PGFANLEINDIEPEELKHYFKEF 177
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 29.1 bits (64), Expect = 2.1
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 608 IVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV 644
+ G G GKS + A G ++P +
Sbjct: 59 VTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSP 95
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 29.0 bits (63), Expect = 2.2
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 601 LTRHSTMIVGPTGGGKSVVINAL 623
+I+G G GKS +++A+
Sbjct: 21 FKEGINLIIGQNGSGKSSLLDAI 43
>d1xoca1 c.94.1.1 (A:17-520) Oligo-peptide binding protein (OPPA)
{Bacillus subtilis [TaxId: 1423]}
Length = 504
Score = 28.9 bits (63), Expect = 2.5
Identities = 11/105 (10%), Positives = 33/105 (31%), Gaps = 2/105 (1%)
Query: 1 MDFRTPQLTFGEIEQWMTRVLDEMMTENLVCSCQMTEWM--LDNIGMTVLAANGVWWTAE 58
+ +I + L ++ E + + + ++ A W +
Sbjct: 348 LKTNQGNKVREDIAVVVQEQLKKIGIEVKTQIVEWSALVEQMNPPNWDFDAMVMGWSLST 407
Query: 59 VENVFAKIRAGNDRAMKDYLGAQNAQLDALVVKVRGELTKNDRKK 103
+ + + + +Y+ +NA+ D L+ + + K
Sbjct: 408 FPDQYDIFHSSQIKKGLNYVWYKNAEADKLMKDAKSISDRKQYSK 452
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 28.3 bits (63), Expect = 3.1
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 606 TMIVGPTGGGKSVVINAL 623
IVG +G GKS + +
Sbjct: 32 IGIVGRSGSGKSTLTKLI 49
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 28.6 bits (62), Expect = 3.1
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 601 LTRHSTMIVGPTGGGKSVVINAL 623
+I+G G GKS +++A+
Sbjct: 21 FKEGINLIIGQNGSGKSSLLDAI 43
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 28.3 bits (63), Expect = 3.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 606 TMIVGPTGGGKSVVINAL 623
GP+GGGKS + + L
Sbjct: 31 IAFAGPSGGGKSTIFSLL 48
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 28.3 bits (63), Expect = 3.4
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 608 IVGPTGGGKSVVINAL----------VKTSTVLGYPARTYTLNPKAVSVIELYGVLNPET 657
I G TG GK+ ++ + +K S + + ++ + P + ++GV E
Sbjct: 67 ITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEY 126
Query: 658 RDW 660
R
Sbjct: 127 RYK 129
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 27.9 bits (62), Expect = 3.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 606 TMIVGPTGGGKSVVINAL 623
T +VGP G GKS V L
Sbjct: 43 TALVGPNGSGKSTVAALL 60
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 28.0 bits (61), Expect = 3.5
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 608 IVGPTGGGKSVVINALVKTSTVLG-YPARTYTLNPKAVSVIELYGVLNPETRDWYDG 663
+VG GKS +++ + + Y T N V + + + +G
Sbjct: 6 LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEG 62
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 28.2 bits (63), Expect = 3.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 606 TMIVGPTGGGKSVVINAL 623
VG +GGGKS +IN +
Sbjct: 47 VAFVGMSGGGKSTLINLI 64
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 27.9 bits (62), Expect = 3.7
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 606 TMIVGPTGGGKSVVINAL 623
+VG +G GKS + + +
Sbjct: 44 VALVGRSGSGKSTIASLI 61
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 27.9 bits (61), Expect = 3.8
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 608 IVGPTGGGKSVVINALVKTSTVLGY----PARTYTLNPKAVSVIELYGVLNPETRDWY 661
+ P+G GKS +I AL+KT + T P V + V + E ++
Sbjct: 7 VSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMI 64
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 27.5 bits (60), Expect = 3.9
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 608 IVGPTGGGKSVVINALVK 625
++G G G+ + N L+
Sbjct: 8 LLGAHGVGRRHIKNTLIT 25
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 27.1 bits (59), Expect = 4.2
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 602 TRHSTMIVGPTGGGKSVVI 620
+ + PTG GKS +
Sbjct: 7 SFQVAHLHAPTGSGKSTKV 25
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 27.8 bits (61), Expect = 4.8
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Query: 554 KSVLVMAGELKRAALQLEESVVLMRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTG 613
K L+ + + E D+ L +D + +T+ G +G
Sbjct: 50 KMDLIEDQDTEDTIQAYAE--DYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSG 107
Query: 614 GGKSVVINALVKTSTVLGYPARTYT 638
GKS ++NA+ + +
Sbjct: 108 VGKSSLLNAISPELGLRTNEISEHL 132
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 27.5 bits (60), Expect = 5.0
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 607 MIVGPTGGGKSVVINALVK 625
+++G G GKS +N+++
Sbjct: 36 LVMGKGGVGKSSTVNSIIG 54
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 27.6 bits (60), Expect = 5.5
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 598 ETMLTRHSTMIVGPTGGGKSVVI 620
+ + T++ G GK+
Sbjct: 4 DIFRKKRLTIMDLHPGAGKTKRY 26
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 27.2 bits (59), Expect = 5.6
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 608 IVGPTGGGKSVVINALVKT-STVLGYPARTYTLNPKA 643
+ GP+G GKS ++ L + S++ G+ T NP+
Sbjct: 5 LSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRP 41
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 27.0 bits (58), Expect = 6.4
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 1/87 (1%)
Query: 608 IVGPTGGGKSVVINALVKTSTVLG-YPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLS 666
IVG GKS ++N L+ + A+T + Y + +T +
Sbjct: 10 IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR 69
Query: 667 NIFRAVNKPLDPGSKERKYILFDGDVD 693
I R +NK + + ++F +
Sbjct: 70 AINRLMNKAASSSIGDVELVIFVVEGT 96
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 589
Score = 27.7 bits (61), Expect = 6.8
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 108 LIVDVRGELTKNDRKKFNTVLIVDVHARDIIDNFIGSDSLSPRSVVRGELTKNDRKKFNT 167
++ DV ++ K K VL+VD + ++ + + + E R+ +
Sbjct: 11 IMHDVIKKVKKKGEWK---VLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPS 67
Query: 168 VLIV 171
+ V
Sbjct: 68 LEAV 71
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 26.6 bits (57), Expect = 7.8
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 600 MLTRH-STMIVGPTGGGKSVVI 620
ML + +T++ G GK+
Sbjct: 3 MLKKGMTTVLDFHPGAGKTRRF 24
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 26.7 bits (57), Expect = 8.0
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 577 MRALRDMNLPKFVSEDVVQMYETMLTRHSTMIVGPTGGGKSVV 619
M RD+ P+ E + + +IV PTG GK+++
Sbjct: 1 MVLRRDLIQPRIYQEVIYAK----CKETNCLIVLPTGLGKTLI 39
>d1xw3a1 d.268.1.4 (A:28-137) Sulfiredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 110
Score = 25.6 bits (56), Expect = 8.9
Identities = 8/78 (10%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Query: 6 PQLTFGEIEQWMTRVLDEMMTENLVCSCQMTEWMLDNIGMTVLAANGVWWTAEV---ENV 62
L +++ + + ++ + + + + + + E +
Sbjct: 28 SVLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGD-YFYSFGGCHRYAAYQQLQRETI 86
Query: 63 FAKIRAGNDRAMKDYLGA 80
AK+ ++ YLGA
Sbjct: 87 PAKLVQSTLSDLRVYLGA 104
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.404
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,783,206
Number of extensions: 133705
Number of successful extensions: 517
Number of sequences better than 10.0: 1
Number of HSP's gapped: 517
Number of HSP's successfully gapped: 55
Length of query: 741
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 649
Effective length of database: 1,144,436
Effective search space: 742738964
Effective search space used: 742738964
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.1 bits)