Query psy17621
Match_columns 448
No_of_seqs 300 out of 1302
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 18:45:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08393 DHC_N2: Dynein heavy 100.0 2.3E-61 4.9E-66 500.9 22.1 362 6-447 13-397 (408)
2 COG5245 DYN1 Dynein, heavy cha 98.3 7.2E-07 1.6E-11 102.1 7.0 194 157-438 587-783 (3164)
3 PF12774 AAA_6: Hydrolytic ATP 98.0 8.4E-07 1.8E-11 86.1 -0.5 52 16-67 45-96 (231)
4 PF08393 DHC_N2: Dynein heavy 97.3 0.0013 2.8E-08 68.7 10.4 122 229-356 63-229 (408)
5 PF10372 YojJ: Bacterial membr 38.4 42 0.00092 26.7 3.4 49 122-174 13-61 (70)
6 PF01865 PhoU_div: Protein of 36.8 3.6E+02 0.0077 25.2 11.5 41 310-350 168-211 (214)
7 PF06160 EzrA: Septation ring 34.7 2E+02 0.0044 31.7 9.2 72 127-205 61-132 (560)
8 PF13986 DUF4224: Domain of un 26.4 72 0.0016 23.2 2.7 31 363-395 2-32 (47)
9 TIGR00153 conserved hypothetic 24.6 6E+02 0.013 24.0 14.0 42 310-351 170-213 (216)
10 PF04745 Pox_A8: VITF-3 subuni 24.3 60 0.0013 32.2 2.5 31 358-401 59-89 (288)
11 PHA01365 hypothetical protein 23.6 43 0.00094 27.2 1.2 54 379-432 6-71 (91)
12 PF07014 Hs1pro-1_C: Hs1pro-1 23.4 2.6E+02 0.0055 27.3 6.5 40 166-208 31-70 (261)
13 PRK04778 septation ring format 23.0 4.5E+02 0.0097 29.0 9.4 70 129-205 67-136 (569)
No 1
>PF08393 DHC_N2: Dynein heavy chain, N-terminal region 2; InterPro: IPR013602 Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. Dyneins generally contain one to three heavy chains, where each heavy chain consists of a C-terminal globular head, a flexible microtubule-binding stalk, and a flexible N-terminal tail known as the cargo-binding domain []. The two categories of dyneins are the axonemal dyneins, which produce the bending motions that propagate along cilia and flagella, and the cytosolic dyneins, which drive a variety of fundamental cellular processes including nuclear migration, organisation of the mitotic spindle, chromosome separation during mitosis, and the positioning and function of many intracellular organelles. Cytoplasmic dyneins contain several accessory subunits ranging from light to intermediate chains. This entry represents a region found C-terminal to the dynein heavy chain N-terminal region 1 (IPR013594 from INTERPRO) in many members of this family. No functions seem to have been attributed specifically to this region. ; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=100.00 E-value=2.3e-61 Score=500.91 Aligned_cols=362 Identities=31% Similarity=0.525 Sum_probs=278.1
Q ss_pred eeeeeeEeeeehhcccccccCcceeeecccCCCccch--HHHHhHhcccccc-ccccccccccc-hhhHH--HHHHHhhc
Q psy17621 6 LRINFYFSYLKLTCSTTYKVSKWQTASRPNCGEGMDF--LAFGKILSGLSQC-GAWGCFDMMTA-NRYWT--KKAIYDFG 79 (448)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~ey--~~f~k~~~~~~~~-~~W~~~d~~~s-~R~~~--~~ai~~~~ 79 (448)
+.--|....-+...++.|..++|..++ .+.++- ..+.+.+..+.+. ..|.+++.+.. +.... -..+.++.
T Consensus 13 ~~~lW~~~~~~~~~~~~w~~~~~~~ld----~~~l~~~v~~~~~~l~~l~~~~~~~~v~~~l~~~i~~f~~~lpli~~L~ 88 (408)
T PF08393_consen 13 LKKLWSLISEWQEQLEEWMNTPFSDLD----VEELEEEVEEFLKQLRKLPKSLREWPVYKELKKKIEEFKKYLPLIQDLR 88 (408)
T ss_dssp --------------HHHHHH--TTT---------------------------------HHHHHHHHHHHHHHTHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhhcC----HHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHHhcHHHHHhc
Confidence 445577777888899999999999996 555543 4455555544443 45777666632 32221 13347889
Q ss_pred CCCCCccccc--cccc-----------hhhhhhcccchhHHHHHHHHHHHHccchHHHHHHHHHhcchhhhhhhc--ccc
Q psy17621 80 KTSKPRTEWM--LDNI-----------GMTVLAANGVWWTAEVENVFSKIRAGNDRAMKDYLGAQNAQLDALVVK--KGE 144 (448)
Q Consensus 80 ~~~~~r~~Wi--l~~~-----------~q~~L~~~qi~wt~EVe~i~~~I~Ag~E~alke~lkk~~~ql~~l~fk--~~~ 144 (448)
+|+++.|||- ++-. .+.++..+...+.++|++++.. |.+|.++++.++++...|..+.|. +++
T Consensus 89 ~~~mk~rHW~~l~~~~g~~~~~~~~~tL~~Ll~~~l~~~~~~I~~I~~~--A~~E~~ie~~L~~i~~~W~~~~f~~~~~~ 166 (408)
T PF08393_consen 89 NPAMKPRHWKQLFQILGIQDFPNESLTLQDLLDLGLLDHEDKIEEISEQ--AQKEYKIEQSLEKIKEEWKNMEFEFVPYK 166 (408)
T ss_dssp STT--CHHHHHHHHCTT-----TTS-SHHHHHHS-CCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCC-B-EEEEET
T ss_pred CccchHHHHHHHHHHhcccccccccccHHHHHHhhhhhhHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHhceeeeeccc
Confidence 9999999992 2222 3455555566788899999876 899999999999999999987774 444
Q ss_pred cc-ccccCCHHHHHHHHHHHHHHHhhhhcCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhc
Q psy17621 145 DR-GFQLGDLSEMLLQLEDSCMNLQSMAGSAYIGPFLPVVQEWEKRLSVVSEVLYTWIQLQRKWLYLEGVEDELKTVKRW 223 (448)
Q Consensus 145 ~~-~~~l~~~~el~~~led~~~~L~~m~~S~~~~~f~~~i~~w~~kL~~~~~il~~w~~vQ~~W~~Le~if~~~~~~~~~ 223 (448)
++ .++|++++++++.|+||++.|++|++|||+++|+.+|.+|+++|..+.++|+.|.+||++|+||+||| .
T Consensus 167 ~~~~~il~~~~~i~~~led~~~~L~~m~~S~~~~~~~~~v~~w~~~L~~~~~il~~w~~~Q~~W~yL~~if--------~ 238 (408)
T PF08393_consen 167 DKDVFILKNWDEIIQQLEDHLLTLQSMKSSPFVKPFRDEVEEWEKKLNNIQEILEEWMEVQRKWMYLEPIF--------S 238 (408)
T ss_dssp TT-CEEEE-CHHHHHHHHHHHHHHHHTCSSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------T
T ss_pred cchhheecchHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------c
Confidence 44 58999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred chhhhcchhhHHHHHHHHHhhhhHHHHHhhhhHHHHhhhHHHHHHhhccccchhhhhccccccccchhhhHHHHHHHhhh
Q psy17621 224 SSDIREMPQCKALEKYLKDFKKSVALFVELKHEALRERHWTELMKKTGVEDELKTVKRWSSDIREMPQCKALEKYLKDFK 303 (448)
Q Consensus 224 ~~di~~~~~~~~~~~~~~~~~~~~~~~~~Lp~e~~~~r~w~~l~~~F~~~~~~~~~~~~~~~I~~~~~~~~le~~~~~f~ 303 (448)
++||+++ ||.|+ ++| ..|+ +.|+
T Consensus 239 ~~di~~~----------------------lp~e~----------~~F-------------~~i~------------~~~~ 261 (408)
T PF08393_consen 239 SSDIKKQ----------------------LPKEA----------KKF-------------SSID------------KEWR 261 (408)
T ss_dssp SCCHCCC----------------------THHHH----------HHH-------------HHHH------------HHHH
T ss_pred chhHHHH----------------------HHHHH----------HHH-------------HHcC------------hHHH
Confidence 6799999 99999 999 9999 9999
Q ss_pred hhhHHHHHHHhccCCceeeecccccHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCeeEecCcHHHHHHhcC-CChhHHH
Q psy17621 304 KSVALFIMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGS-SSPTAIQ 382 (448)
Q Consensus 304 ~~~~~~im~~~~~~p~v~~~~~~~~~~~~L~~~~~~L~~i~k~L~~yLe~kR~~FPRFyFlSd~eLL~ils~-~~p~~i~ 382 (448)
. +|..+.++|+|+++|..|++.+.|..+++.|+.|+|+|++|||+||..|||||||||+|||+|||+ +||..++
T Consensus 262 ~-----i~~~~~~~~~v~~~~~~~~~~~~l~~~~~~l~~i~k~L~~~Le~kR~~FPRfyFlsd~eLl~ils~~~~~~~i~ 336 (408)
T PF08393_consen 262 S-----IMKRAQKDPNVLSVCSNPDLLEKLESINESLEKIQKSLNDYLESKREAFPRFYFLSDDELLEILSQSKDPEQIQ 336 (408)
T ss_dssp H-----HHHHHHCT-CCHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHC-HHHHHHHHHTTTTCHHHH
T ss_pred H-----HHHHHHhCcchhHHhhHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccceeecCcHHHHHHHHcCCChHHHH
Confidence 9 999999999999999999999999999999999999999999999999999999999999999997 6999999
Q ss_pred HHHHhhhhcccceeecccCCCCccEEEEEeeCCCCEEEccCCccCCCCHHHHHHHHHHHHHHhcC
Q psy17621 383 EHIVKMFDNVQSLKMADSESPGVKTISAMISCENEVMDFRTPQLTFGEIEQWMTRVLDEMMTGSP 447 (448)
Q Consensus 383 ~~l~klF~~I~~l~~~~~~~~~~~~I~g~~S~eGE~v~~~~~v~~~g~ve~WL~~le~~mr~tl~ 447 (448)
+|++||||||++|.|++++ ..|+||+|++||+|+|.+||.+.|+||.||++||++|+.||+
T Consensus 337 ~~l~k~F~~i~~l~~~~~~----~~i~~~~s~~gE~~~l~~~v~~~~~ve~WL~~le~~m~~tl~ 397 (408)
T PF08393_consen 337 PHLKKCFPGIKSLEFDENN----NSITGMISAEGETLPLDKPVSIEGPVEEWLNELEEEMKSTLK 397 (408)
T ss_dssp HHHHHCCSSEEEEEE-TTS----SEEEEEEETTS-EEEEEEEEESSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccch----hhhhhhcCCCCCeEEeCCcccCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999998754 369999999999999999999999999999999999999986
No 2
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.34 E-value=7.2e-07 Score=102.13 Aligned_cols=194 Identities=10% Similarity=-0.003 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHhhhhcCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcchhhhcchhhHHH
Q psy17621 157 LLQLEDSCMNLQSMAGSAYIGPFLPVVQEWEKRLSVVSEVLYTWIQLQRKWLYLEGVEDELKTVKRWSSDIREMPQCKAL 236 (448)
Q Consensus 157 ~~~led~~~~L~~m~~S~~~~~f~~~i~~w~~kL~~~~~il~~w~~vQ~~W~~Le~if~~~~~~~~~~~di~~~~~~~~~ 236 (448)
-+-|.+.+..+-.|..+-| |+.. .+.+.+|...+.+-- -.|+.++.+.. ...|++..
T Consensus 587 rewc~~~l~~~~~~~~a~~---~e~~-~d~~~~l~~~s~~~v------~~~ld~y~~~~-------~~~dl~~~------ 643 (3164)
T COG5245 587 REWCSSVLSDDFLEERAVR---VERG-ADGARRLRASSGSPV------LRRLDEYLMMM-------SLEDLMPL------ 643 (3164)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHcC-ccHHHHHHhccCCcH------HHHHHHHHHHh-------hhhhhccc------
Confidence 3334444444444444444 2322 334444444433211 45777777774 34577666
Q ss_pred HHHHHHhhhhHHHHHhhhhHHHHhhhHHHHHHhhccccchhhhhccccccccchhhhHHHHHHHhhhhhhHHHHHHHhcc
Q psy17621 237 EKYLKDFKKSVALFVELKHEALRERHWTELMKKTGVEDELKTVKRWSSDIREMPQCKALEKYLKDFKKSVALFIMWETHK 316 (448)
Q Consensus 237 ~~~~~~~~~~~~~~~~Lp~e~~~~r~w~~l~~~F~~~~~~~~~~~~~~~I~~~~~~~~le~~~~~f~~~~~~~im~~~~~ 316 (448)
+|++. .+| ..+. ..++. |.+++..
T Consensus 644 ----------------ip~~~----------~~~-------------~sl~------------s~~~~-----i~~r~~~ 667 (3164)
T COG5245 644 ----------------IPHAV----------HRK-------------MSLV------------SGVRG-----IYKRVVS 667 (3164)
T ss_pred ----------------ccHHH----------HHH-------------HHHH------------hhhhh-----hhhhhhc
Confidence 99999 888 6666 77887 8888776
Q ss_pred CCceeeecccccHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCeeEecCcHHHHHHhcC-CChhHHHHHHHhhhhcccce
Q psy17621 317 NPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGS-SSPTAIQEHIVKMFDNVQSL 395 (448)
Q Consensus 317 ~p~v~~~~~~~~~~~~L~~~~~~L~~i~k~L~~yLe~kR~~FPRFyFlSd~eLL~ils~-~~p~~i~~~l~klF~~I~~l 395 (448)
-...++....|+. ..|.-..+.++.+..++..+|+.+|..||| |+.++||+++++. .|...+.+++.|+|..+...
T Consensus 668 ~~~~i~~i~~~~~-d~l~l~~~~~~~v~~si~~~l~~~~r~~~r--~~~~~~l~~~v~~~~~~~~~~~f~~k~~~~~e~~ 744 (3164)
T COG5245 668 GCEAINTILEDVG-DDLDLFYKEMDQVFMSIEKVLGLRWREVER--ASEVEELMDRVRELENRVYSYRFFVKKIAKEEMK 744 (3164)
T ss_pred ccchhheeeccCC-chHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hcchHHHHHHHhcccchHHHHHHHHHHHhhHHHH
Confidence 6666666666653 348778899999999999999999999999 8999999999997 78888999999999999888
Q ss_pred eecccCCCCccEEEEEeeCCCCEEEccCCccCCC--CHHHHHHHH
Q psy17621 396 KMADSESPGVKTISAMISCENEVMDFRTPQLTFG--EIEQWMTRV 438 (448)
Q Consensus 396 ~~~~~~~~~~~~I~g~~S~eGE~v~~~~~v~~~g--~ve~WL~~l 438 (448)
.|-.+ .|+|+-+-+||...+..-+.+.. .+..|+++-
T Consensus 745 ~~~~~------~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~in~s 783 (3164)
T COG5245 745 TVFSS------RIQKKEPFSLDSEAYVGFFRLYEKSIVIRGINRS 783 (3164)
T ss_pred HHHHH------HhccCCCccchHHhhhhhhhhHHHHHHHHHhhhH
Confidence 77653 59999999999988888777653 566788843
No 3
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.03 E-value=8.4e-07 Score=86.13 Aligned_cols=52 Identities=33% Similarity=0.532 Sum_probs=44.6
Q ss_pred ehhcccccccCcceeeecccCCCccchHHHHhHhccccccccccccccccch
Q psy17621 16 KLTCSTTYKVSKWQTASRPNCGEGMDFLAFGKILSGLSQCGAWGCFDMMTAN 67 (448)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~n~~e~~ey~~f~k~~~~~~~~~~W~~~d~~~s~ 67 (448)
+.++|++.....++.++||||+++|||..+++++.|+.+.|+|+|||+|+.+
T Consensus 45 Ktetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl 96 (231)
T PF12774_consen 45 KTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRL 96 (231)
T ss_dssp HHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCS
T ss_pred chhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhh
Confidence 4678999999999999999999999999999999999999999999999653
No 4
>PF08393 DHC_N2: Dynein heavy chain, N-terminal region 2; InterPro: IPR013602 Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. Dyneins generally contain one to three heavy chains, where each heavy chain consists of a C-terminal globular head, a flexible microtubule-binding stalk, and a flexible N-terminal tail known as the cargo-binding domain []. The two categories of dyneins are the axonemal dyneins, which produce the bending motions that propagate along cilia and flagella, and the cytosolic dyneins, which drive a variety of fundamental cellular processes including nuclear migration, organisation of the mitotic spindle, chromosome separation during mitosis, and the positioning and function of many intracellular organelles. Cytoplasmic dyneins contain several accessory subunits ranging from light to intermediate chains. This entry represents a region found C-terminal to the dynein heavy chain N-terminal region 1 (IPR013594 from INTERPRO) in many members of this family. No functions seem to have been attributed specifically to this region. ; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.31 E-value=0.0013 Score=68.70 Aligned_cols=122 Identities=23% Similarity=0.415 Sum_probs=80.0
Q ss_pred cchhhHHHHHHHHHhhhhHHHHHhhhhHHHHhhhHHHHHHhhc-c---ccchhhhhcccccccc----------chh-hh
Q psy17621 229 EMPQCKALEKYLKDFKKSVALFVELKHEALRERHWTELMKKTG-V---EDELKTVKRWSSDIRE----------MPQ-CK 293 (448)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~Lp~e~~~~r~w~~l~~~F~-~---~~~~~~~~~~~~~I~~----------~~~-~~ 293 (448)
..+++..++..++.|+..++++..|.++++++|||+++.+..| . +..+|++..+..++.+ .|+ |.
T Consensus 63 ~~~v~~~l~~~i~~f~~~lpli~~L~~~~mk~rHW~~l~~~~g~~~~~~~~~tL~~Ll~~~l~~~~~~I~~I~~~A~~E~ 142 (408)
T PF08393_consen 63 EWPVYKELKKKIEEFKKYLPLIQDLRNPAMKPRHWKQLFQILGIQDFPNESLTLQDLLDLGLLDHEDKIEEISEQAQKEY 142 (408)
T ss_dssp ----HHHHHHHHHHHHHHTHHHHHTTSTT--CHHHHHHHHCTT-----TTS-SHHHHHHS-CCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcHHHHHhcCccchHHHHHHHHHHhcccccccccccHHHHHHhhhhhhHHHHHHHHHHHhHHH
Confidence 3456677888899999999999999999999999999999998 2 3467777766655533 144 55
Q ss_pred HHHHHHHhhhhhhH------------------------------HHHHHHhccCCceeeecccccHHHHHHHHHHHHHHH
Q psy17621 294 ALEKYLKDFKKSVA------------------------------LFIMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEAC 343 (448)
Q Consensus 294 ~le~~~~~f~~~~~------------------------------~~im~~~~~~p~v~~~~~~~~~~~~L~~~~~~L~~i 343 (448)
++|..+++.+..|. +..+..+..+|.+ ..+......+...|..+
T Consensus 143 ~ie~~L~~i~~~W~~~~f~~~~~~~~~~~il~~~~~i~~~led~~~~L~~m~~S~~~------~~~~~~v~~w~~~L~~~ 216 (408)
T PF08393_consen 143 KIEQSLEKIKEEWKNMEFEFVPYKDKDVFILKNWDEIIQQLEDHLLTLQSMKSSPFV------KPFRDEVEEWEKKLNNI 216 (408)
T ss_dssp HHHHHHHHHHHHHCC-B-EEEEETTT-CEEEE-CHHHHHHHHHHHHHHHHTCSSTTT------TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhceeeeeccccchhheecchHHHHHHHHHHHHHHhcccccchh------HHHHHHHHHHHHHHHHH
Confidence 66665544444222 1112222222221 24667788899999999
Q ss_pred HHHHHHHHHhhcc
Q psy17621 344 EKSLQDYLTDKRN 356 (448)
Q Consensus 344 ~k~L~~yLe~kR~ 356 (448)
+..|..+.+-+|.
T Consensus 217 ~~il~~w~~~Q~~ 229 (408)
T PF08393_consen 217 QEILEEWMEVQRK 229 (408)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999997
No 5
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=38.41 E-value=42 Score=26.67 Aligned_cols=49 Identities=22% Similarity=0.367 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcchhhhhhhccccccccccCCHHHHHHHHHHHHHHHhhhhcCc
Q psy17621 122 RAMKDYLGAQNAQLDALVVKKGEDRGFQLGDLSEMLLQLEDSCMNLQSMAGSA 174 (448)
Q Consensus 122 ~alke~lkk~~~ql~~l~fk~~~~~~~~l~~~~el~~~led~~~~L~~m~~S~ 174 (448)
..+++++.++..++..+.-.-..+++.+|..+++|-....+ ++++.+|-
T Consensus 13 ~~lk~~L~~I~~~~~~i~~~ld~~~~ClL~e~e~i~~~f~~----~q~~Assy 61 (70)
T PF10372_consen 13 EQLKQYLEQIEEEISQIIQTLDEDDCCLLCEFEEIREKFLD----IQTLASSY 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-TT--GGGGHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCceechhHHHHHHHHHH----HHHHHHHH
Confidence 35666666666666655443334557899999877655544 44444443
No 6
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=36.79 E-value=3.6e+02 Score=25.21 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=26.0
Q ss_pred HHHHhccCC---ceeeecccccHHHHHHHHHHHHHHHHHHHHHH
Q psy17621 310 IMWETHKNP---RVIEQCLVPNRLEHLEQLKDGLEACEKSLQDY 350 (448)
Q Consensus 310 im~~~~~~p---~v~~~~~~~~~~~~L~~~~~~L~~i~k~L~~y 350 (448)
++..++.+. +.+++..-.++...|+++.+.++.+-..+...
T Consensus 168 ~~~~lf~~~~~~d~~~~~~~~ei~~~le~~~D~~edvad~i~~i 211 (214)
T PF01865_consen 168 LIKKLFSNEDEMDPIEIIKLKEIYEHLEDIADKCEDVADRIEII 211 (214)
T ss_dssp HHHHHHHHGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666533 34445555567777888888887777766643
No 7
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=34.75 E-value=2e+02 Score=31.70 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=50.9
Q ss_pred HHHHhcchhhhhhhccccccccccCCHHHHHHHHHHHHHHHhhhhcCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17621 127 YLGAQNAQLDALVVKKGEDRGFQLGDLSEMLLQLEDSCMNLQSMAGSAYIGPFLPVVQEWEKRLSVVSEVLYTWIQLQR 205 (448)
Q Consensus 127 ~lkk~~~ql~~l~fk~~~~~~~~l~~~~el~~~led~~~~L~~m~~S~~~~~f~~~i~~w~~kL~~~~~il~~w~~vQ~ 205 (448)
...+....|+.+. ..-++++++.+..+++......-+++..-.....+.+..-+..+..+.+-|+.......
T Consensus 61 ~fe~w~~~w~~i~-------~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~ 132 (560)
T PF06160_consen 61 KFEEWRQKWDEIV-------TKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEE 132 (560)
T ss_pred HHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666555 23457778888888888888888887777777888888888888777777766655543
No 8
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=26.39 E-value=72 Score=23.16 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=26.1
Q ss_pred ecCcHHHHHHhcCCChhHHHHHHHhhhhcccce
Q psy17621 363 FISDDELLSILGSSSPTAIQEHIVKMFDNVQSL 395 (448)
Q Consensus 363 FlSd~eLL~ils~~~p~~i~~~l~klF~~I~~l 395 (448)
|||++||.++-+.+.|..-...|.+. ||.-+
T Consensus 2 fLT~~El~elTG~k~~~~Q~~~L~~~--Gi~~~ 32 (47)
T PF13986_consen 2 FLTDEELQELTGYKRPSKQIRWLRRN--GIPFV 32 (47)
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHC--CCeeE
Confidence 89999999999999999888888886 55433
No 9
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=24.62 E-value=6e+02 Score=23.96 Aligned_cols=42 Identities=14% Similarity=0.080 Sum_probs=26.3
Q ss_pred HHHHhccCC--ceeeecccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy17621 310 IMWETHKNP--RVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYL 351 (448)
Q Consensus 310 im~~~~~~p--~v~~~~~~~~~~~~L~~~~~~L~~i~k~L~~yL 351 (448)
.+..+++.. ..+++..-..+++.|+.+.+.++.+-..+...+
T Consensus 170 ~~~~Lf~~e~~d~i~~i~~kei~~~le~iaD~~Edvad~i~~i~ 213 (216)
T TIGR00153 170 IYKKLYNLEVSNPWEGKILCKFIEKLGNISDYAEDAGDRIHIII 213 (216)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555443 344444445677778888888887777776544
No 10
>PF04745 Pox_A8: VITF-3 subunit protein; InterPro: IPR006834 This is a family of Chordopoxvirus proteins composing one of the two subunits that make up VITF-3, a virally encoded complex necessary for intermediate stage transcription [].
Probab=24.31 E-value=60 Score=32.23 Aligned_cols=31 Identities=19% Similarity=0.638 Sum_probs=25.7
Q ss_pred CCeeEecCcHHHHHHhcCCChhHHHHHHHhhhhcccceeecccC
Q psy17621 358 FPRFFFISDDELLSILGSSSPTAIQEHIVKMFDNVQSLKMADSE 401 (448)
Q Consensus 358 FPRFyFlSd~eLL~ils~~~p~~i~~~l~klF~~I~~l~~~~~~ 401 (448)
-||+|||+-.|+ .|+-.|-++|+++.+...+
T Consensus 59 l~Rl~FL~ykEv-------------nylFrclD~ik~v~itKKN 89 (288)
T PF04745_consen 59 LPRLYFLSYKEV-------------NYLFRCLDAIKDVQITKKN 89 (288)
T ss_pred hhhccccchHHH-------------HHHHHHHhhhhheeeeccC
Confidence 499999998883 5777888999999988764
No 11
>PHA01365 hypothetical protein
Probab=23.62 E-value=43 Score=27.22 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=37.0
Q ss_pred hHHHHHHHhhhhc--ccceeecccC-CC---------CccEEEEEeeCCCCEEEccCCccCCCCHH
Q psy17621 379 TAIQEHIVKMFDN--VQSLKMADSE-SP---------GVKTISAMISCENEVMDFRTPQLTFGEIE 432 (448)
Q Consensus 379 ~~i~~~l~klF~~--I~~l~~~~~~-~~---------~~~~I~g~~S~eGE~v~~~~~v~~~g~ve 432 (448)
..+.+.++|||.+ |..+.+..++ ++ -+..-+|++=.||=.+||...|-..|.+.
T Consensus 6 e~ikrilqK~fkdskieki~~lps~~dv~~KYiif~r~s~~y~G~~vvdGiqIPFiAev~lngk~~ 71 (91)
T PHA01365 6 NGIKKLLQKCFKDSSIDVIFMSCNNLSPHKKYMIIDPESKYYIGYILTDGIKIPFIAEVWHNNTTR 71 (91)
T ss_pred HHHHHHHHHHhCCCceEEEEEecCCCCccccEEEEEEecceEEEEEEEcceeccEEeeeeeCCeEE
Confidence 3578889999975 4455554443 21 23345799999999999998887666543
No 12
>PF07014 Hs1pro-1_C: Hs1pro-1 protein C-terminus; InterPro: IPR009743 This entry represents the C terminus (approximately 270 residues) of a number of plant Hs1pro-1 proteins, which are believed to confer nematode resistance [].
Probab=23.35 E-value=2.6e+02 Score=27.34 Aligned_cols=40 Identities=20% Similarity=0.406 Sum_probs=27.7
Q ss_pred HHhhhhcCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17621 166 NLQSMAGSAYIGPFLPVVQEWEKRLSVVSEVLYTWIQLQRKWL 208 (448)
Q Consensus 166 ~L~~m~~S~~~~~f~~~i~~w~~kL~~~~~il~~w~~vQ~~W~ 208 (448)
.+.+++.+||-..+.+.= ...|..+.+|++.|+.+-++-+
T Consensus 31 eihalk~~p~dd~i~n~E---n~tL~t~hQIlEsWi~~a~~LL 70 (261)
T PF07014_consen 31 EIHALKTTPYDDHIGNHE---NHTLHTTHQILESWIHVARKLL 70 (261)
T ss_pred HHHHhccCCcchhccCcc---chHHHHHHHHHHHHHHHHHHHH
Confidence 345667787755443221 2458999999999999988754
No 13
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=23.02 E-value=4.5e+02 Score=29.00 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=48.3
Q ss_pred HHhcchhhhhhhccccccccccCCHHHHHHHHHHHHHHHhhhhcCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17621 129 GAQNAQLDALVVKKGEDRGFQLGDLSEMLLQLEDSCMNLQSMAGSAYIGPFLPVVQEWEKRLSVVSEVLYTWIQLQR 205 (448)
Q Consensus 129 kk~~~ql~~l~fk~~~~~~~~l~~~~el~~~led~~~~L~~m~~S~~~~~f~~~i~~w~~kL~~~~~il~~w~~vQ~ 205 (448)
.++...|+.++ ...++++++.+..+++.....+-+++..-.....+.+..-+..+..+.+-|+.+.....
T Consensus 67 ~~w~~~~~~i~-------~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~ 136 (569)
T PRK04778 67 EEWRQKWDEIV-------TNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEE 136 (569)
T ss_pred HHHHHHHHHHH-------HhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555544 24567788888888888888877777777777777777777777777766665555433
Done!