Query psy17621
Match_columns 448
No_of_seqs 300 out of 1302
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 18:45:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 1.7E-59 5.7E-64 569.4 21.2 365 4-447 32-419 (3245)
2 4akg_A Glutathione S-transfera 100.0 5.8E-52 2E-56 501.9 20.2 255 118-447 217-476 (2695)
3 3vkg_A Dynein heavy chain, cyt 97.6 4.8E-06 1.6E-10 103.4 -2.2 104 37-140 383-498 (3245)
4 4akg_A Glutathione S-transfera 97.1 9.2E-05 3.1E-09 91.4 0.3 90 37-130 440-534 (2695)
5 1ucr_A Protein DSVD; dissimila 41.2 25 0.00085 27.4 3.6 44 342-388 3-46 (78)
6 3l39_A Putative PHOU-like phos 34.0 2.7E+02 0.0092 25.3 10.7 42 310-351 181-223 (227)
7 3twe_A Alpha4H; unknown functi 29.6 44 0.0015 20.0 2.6 22 327-348 4-25 (27)
8 2lw1_A ABC transporter ATP-bin 28.2 1.9E+02 0.0065 22.4 7.1 61 150-214 24-86 (89)
9 2uuy_B Tryptase inhibitor; cal 24.2 20 0.00067 25.8 0.5 13 354-366 15-27 (52)
10 3sl9_C B-cell CLL/lymphoma 9 p 18.1 91 0.0031 21.9 2.8 23 337-359 12-34 (55)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=1.7e-59 Score=569.45 Aligned_cols=365 Identities=24% Similarity=0.386 Sum_probs=294.5
Q ss_pred ceeeeeeeEeeeehhcccccccCcceeeecccCCCccch--HHHHhHhcccccc-ccccccccc-cchhhHHH--HHHHh
Q psy17621 4 RRLRINFYFSYLKLTCSTTYKVSKWQTASRPNCGEGMDF--LAFGKILSGLSQC-GAWGCFDMM-TANRYWTK--KAIYD 77 (448)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~ey--~~f~k~~~~~~~~-~~W~~~d~~-~s~R~~~~--~ai~~ 77 (448)
..++--|.....+.+.+++|+.++|..++ .+.++- ..|.+.++.+.+. +.|.+++.+ +.++.... ..+.+
T Consensus 32 ~~l~~~w~~~~~~~~~~~~~~~~~w~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~i~~f~~~lpll~~ 107 (3245)
T 3vkg_A 32 QDLKAVWVELSNTWQEIDSLKETAWSAII----PRKVRKSLEDTLQKLKNLPNRIRQYSAFDHAQNLIKIYLKGNAIITD 107 (3245)
T ss_dssp ---------------CHHHHHHCCTTTCC----C-------------------------CHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhcC----HHHHHHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 34566799999999999999999999996 777754 6677888887766 789888766 33443321 34578
Q ss_pred hcCCCCCccccc--c----------ccchhhhhhcccchhHHHHHHHHHHHHccchHHHHHHHHHhcchhhhhhhc--cc
Q psy17621 78 FGKTSKPRTEWM--L----------DNIGMTVLAANGVWWTAEVENVFSKIRAGNDRAMKDYLGAQNAQLDALVVK--KG 143 (448)
Q Consensus 78 ~~~~~~~r~~Wi--l----------~~~~q~~L~~~qi~wt~EVe~i~~~I~Ag~E~alke~lkk~~~ql~~l~fk--~~ 143 (448)
+.+|+++.|||- + +.+...++..+...+.++|++|... |.+|.++|+.++++...|+.+.|. .+
T Consensus 108 L~n~~~~~RHW~~l~~~~g~~~~~~~~tL~~ll~~~l~~~~~~i~~I~~~--A~~E~~iE~~L~~i~~~W~~~~f~~~~~ 185 (3245)
T 3vkg_A 108 LHSEAIKDRHWKILKKRLNTNWIITELTLGSIWDSDLARNENIYREVITA--AQGEIALEEFLKGVREFWTTLELDLVNY 185 (3245)
T ss_dssp TTSTTCCHHHHHHHHHHTTCCCCTTSCCHHHHHHSCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCBCEEEEE
T ss_pred hCCccccHHHHHHHHHHhCCCCCccCCCHHHHHhccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhceEEEEEec
Confidence 999999999993 1 2234667778888889999999876 899999999999999999987774 45
Q ss_pred cccccccCCHHHHHHHHHHHHHHHhhhhcCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhc
Q psy17621 144 EDRGFQLGDLSEMLLQLEDSCMNLQSMAGSAYIGPFLPVVQEWEKRLSVVSEVLYTWIQLQRKWLYLEGVEDELKTVKRW 223 (448)
Q Consensus 144 ~~~~~~l~~~~el~~~led~~~~L~~m~~S~~~~~f~~~i~~w~~kL~~~~~il~~w~~vQ~~W~~Le~if~~~~~~~~~ 223 (448)
++++++|+++++|++.|+||++.|++|++|||+++|+++|.+|+++|+.++++|+.|.+||++|+||++||. .
T Consensus 186 ~~~~~ll~~~dei~~~led~~~~l~sm~~S~~~~~f~~~v~~We~~L~~~~~il~~W~~vQ~~W~yLe~IF~-------~ 258 (3245)
T 3vkg_A 186 QRKCKLVRGWDDLFNKLAEHLNSISAMKMSPYYKVFEEEANHWDDRLNKVRSLLDVWIDVQRRWVYLEGIFS-------G 258 (3245)
T ss_dssp TTTEEEEECHHHHHHHHHHHHHHHHHTTSSTTTTGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred cCCeeEeCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------C
Confidence 566789999999999999999999999999999999999999999999999999999999999999999993 3
Q ss_pred chhhhcchhhHHHHHHHHHhhhhHHHHHhhhhHHHHhhhHHHHHHhhccccchhhhhccccccccchhhhHHHHHHHhhh
Q psy17621 224 SSDIREMPQCKALEKYLKDFKKSVALFVELKHEALRERHWTELMKKTGVEDELKTVKRWSSDIREMPQCKALEKYLKDFK 303 (448)
Q Consensus 224 ~~di~~~~~~~~~~~~~~~~~~~~~~~~~Lp~e~~~~r~w~~l~~~F~~~~~~~~~~~~~~~I~~~~~~~~le~~~~~f~ 303 (448)
++||++| ||.|+ ++| +.|| ++|+
T Consensus 259 s~DI~~q----------------------LP~E~----------~rF-------------~~vd------------~~~~ 281 (3245)
T 3vkg_A 259 SGDINQL----------------------LPAES----------TRF-------------KSIN------------SEFI 281 (3245)
T ss_dssp ---CTTT----------------------SHHHH----------HHH-------------HHHH------------HHHH
T ss_pred cHHHHHH----------------------hHHHH----------HHH-------------HHHH------------HHHH
Confidence 5799999 99999 999 9999 9999
Q ss_pred hhhHHHHHHHhccCCceeeecccccHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCeeEecCcHHHHHHhcC-CChhHHH
Q psy17621 304 KSVALFIMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGS-SSPTAIQ 382 (448)
Q Consensus 304 ~~~~~~im~~~~~~p~v~~~~~~~~~~~~L~~~~~~L~~i~k~L~~yLe~kR~~FPRFyFlSd~eLL~ils~-~~p~~i~ 382 (448)
+ ||.++.++|+|+++|..|++++.|+++++.|+.|+|+|++|||+||..|||||||||+|||+|||+ +||..||
T Consensus 282 ~-----im~~~~~~~~v~~~~~~~~~~~~L~~~~~~Le~iqk~L~~yLE~KR~~FPRFyFlSd~eLLeILs~~~dp~~vq 356 (3245)
T 3vkg_A 282 A-----ILKKVSGAPLILEVLAIERIQQTMERLSDLLGKVQKALGEYLERQRSAFARFYFVGDEDLLEIIGNSKDIIKIQ 356 (3245)
T ss_dssp H-----HHHHHHHSCBHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGGGSCHHHHHHHHHGGGCGGGTG
T ss_pred H-----HHHHHhcCCceEeecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhccCcHHHHHHHHcCCChHHHH
Confidence 9 999999999999999999999999999999999999999999999999999999999999999996 7999999
Q ss_pred HHHHhhhhcccceeecccCCCCccEEEEEeeCCCCEEEccCCccC--CCCHHHHHHHHHHHHHHhcC
Q psy17621 383 EHIVKMFDNVQSLKMADSESPGVKTISAMISCENEVMDFRTPQLT--FGEIEQWMTRVLDEMMTGSP 447 (448)
Q Consensus 383 ~~l~klF~~I~~l~~~~~~~~~~~~I~g~~S~eGE~v~~~~~v~~--~g~ve~WL~~le~~mr~tl~ 447 (448)
+||+|||+||++|.|+++. ..|+||+|++||+|+|.+||.+ .|+||.||++||++||.|||
T Consensus 357 ~hl~K~F~~I~~l~f~~~~----~~i~~m~S~eGE~v~~~~~v~~~~~~~ve~WL~~le~~m~~tl~ 419 (3245)
T 3vkg_A 357 KHFRKMFAGLANLTLDDEK----TTIIGMSSAEGETVTFKKPISIANGPKIHEWLTMVESEMKSTLA 419 (3245)
T ss_dssp GGGGGTCSSCCEEEECTTS----CEEEEEECTTSCEEEEEEEEESSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhheEEecCCC----CEEEEEEcCCCCEEEeCCccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998753 4789999999999999999965 48999999999999999986
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=5.8e-52 Score=501.85 Aligned_cols=255 Identities=22% Similarity=0.354 Sum_probs=239.7
Q ss_pred ccchHHHHHHHHHhcchhhhhhhc--cccccccccCCHHHHHHHHHHHHHHHhhhhcCcCCCCcHHHHHHHHHHHHHHHH
Q psy17621 118 AGNDRAMKDYLGAQNAQLDALVVK--KGEDRGFQLGDLSEMLLQLEDSCMNLQSMAGSAYIGPFLPVVQEWEKRLSVVSE 195 (448)
Q Consensus 118 Ag~E~alke~lkk~~~ql~~l~fk--~~~~~~~~l~~~~el~~~led~~~~L~~m~~S~~~~~f~~~i~~w~~kL~~~~~ 195 (448)
|.+|.++|+.++++...|+.+.|. .++++.++|+++++|++.|+||++.|++|++|||+++|+++|.+|+++|+.+++
T Consensus 217 AskE~~iE~~L~~i~~~W~~~~f~~~~~~~~~~~l~~~d~i~~~l~d~~~~l~~m~~s~~~~~f~~~~~~w~~~L~~~~~ 296 (2695)
T 4akg_A 217 KSDEFVIEKSLNRIKKFWKEAQYEVIEHSSGLKLVREWDVLEQACKEDLEELVSMKASNYYKIFEQDCLDLESKLTKLSE 296 (2695)
T ss_dssp ----CHHHHHHHHHHHHHTSCCCEEEECSSSCEEEECTHHHHHHHHHHHHHHHHTSSCSTTTTTHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHhhceEEEEEEecCCeEEECCHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999987774 555556899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhcchhhhcchhhHHHHHHHHHhhhhHHHHHhhhhHHHHhhhHHHHHHhhccccc
Q psy17621 196 VLYTWIQLQRKWLYLEGVEDELKTVKRWSSDIREMPQCKALEKYLKDFKKSVALFVELKHEALRERHWTELMKKTGVEDE 275 (448)
Q Consensus 196 il~~w~~vQ~~W~~Le~if~~~~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~Lp~e~~~~r~w~~l~~~F~~~~~ 275 (448)
+|+.|.+||++|+||++||+ .++||++| ||.|+ ++|
T Consensus 297 ~l~~w~~vQ~~W~yLe~iF~-------~s~di~~q----------------------Lp~e~----------~~F----- 332 (2695)
T 4akg_A 297 IQVNWVEVQFYWLDLYGILG-------ENLDIQNF----------------------LPLET----------SKF----- 332 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-------SCSHHHHH----------------------CHHHH----------HHH-----
T ss_pred HHHHHHHHHHHHHHHHhHhc-------CcHHHHHH----------------------hHHHH----------HHH-----
Confidence 99999999999999999994 46799999 99999 999
Q ss_pred hhhhhccccccccchhhhHHHHHHHhhhhhhHHHHHHHhccCCceeeecccccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17621 276 LKTVKRWSSDIREMPQCKALEKYLKDFKKSVALFIMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKR 355 (448)
Q Consensus 276 ~~~~~~~~~~I~~~~~~~~le~~~~~f~~~~~~~im~~~~~~p~v~~~~~~~~~~~~L~~~~~~L~~i~k~L~~yLe~kR 355 (448)
+.|| ++|++ ||.++.++|+|+++|..|++++.|+++++.|+.|+|+|++|||+||
T Consensus 333 --------~~vd------------~~~~~-----im~~~~~~~~v~~~~~~~~~~~~L~~~~~~Le~iqk~L~~yLe~KR 387 (2695)
T 4akg_A 333 --------KSLT------------SEYKM-----ITTRAFQLDTTIEVIHIPNFDTTLKLTIDSLKMIKSSLSTFLERQR 387 (2695)
T ss_dssp --------HHHH------------HHHHH-----HHHHHHTTCCSGGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHH------------HHHHH-----HHHHHHhCCCeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 99999 9999999999999999999999999999999999999999999999
Q ss_pred ccCCeeEecCcHHHHHHhcC-CChhHHHHHHHhhhhcccceeecccCCCCccEEEEEeeCCCCEEEccCCccCCC--CHH
Q psy17621 356 NAFPRFFFISDDELLSILGS-SSPTAIQEHIVKMFDNVQSLKMADSESPGVKTISAMISCENEVMDFRTPQLTFG--EIE 432 (448)
Q Consensus 356 ~~FPRFyFlSd~eLL~ils~-~~p~~i~~~l~klF~~I~~l~~~~~~~~~~~~I~g~~S~eGE~v~~~~~v~~~g--~ve 432 (448)
..|||||||||+|||+|||+ +||..||+|++|||+||++|.|++ ..|+||+|++||+|+|.+||.+.| +||
T Consensus 388 ~~FPRFyFlsd~eLLeiLs~~~dp~~vq~hl~k~F~~i~~l~f~~------~~i~~m~s~egE~v~~~~~v~~~~~~~ve 461 (2695)
T 4akg_A 388 RQFPRFYFLGNDDLLKIIGSGKHHDQVSKFMKKMFGSIESIIFLE------DFITGVRSVEGEVLNLNEKIELKDSIQAQ 461 (2695)
T ss_dssp HHSTTHHHHCHHHHHHHHHTTTTSGGGHHHHHHHTSSEEEEEECS------SEEEEEEETTSCEEEEEEEEECCTTCCHH
T ss_pred hhCCcceecCcHHHHHHHhcCCCHHHHHHHHHHHhhhhhhEEecC------ceEEEEEcCCCCEEEeCCceecCCCCCHH
Confidence 99999999999999999997 899999999999999999999983 379999999999999999999875 799
Q ss_pred HHHHHHHHHHHHhcC
Q psy17621 433 QWMTRVLDEMMTGSP 447 (448)
Q Consensus 433 ~WL~~le~~mr~tl~ 447 (448)
.||++||++||.|||
T Consensus 462 ~WL~~le~~m~~tl~ 476 (2695)
T 4akg_A 462 EWLNILDTEIKLSVF 476 (2695)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999986
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.60 E-value=4.8e-06 Score=103.36 Aligned_cols=104 Identities=13% Similarity=0.183 Sum_probs=82.3
Q ss_pred CCccchHHHHhHhcc--ccccccccc--cccc-cchhhHHHHHHHhhcC----CCCCccccccccchhhhhhcccchhHH
Q psy17621 37 GEGMDFLAFGKILSG--LSQCGAWGC--FDMM-TANRYWTKKAIYDFGK----TSKPRTEWMLDNIGMTVLAANGVWWTA 107 (448)
Q Consensus 37 ~e~~ey~~f~k~~~~--~~~~~~W~~--~d~~-~s~R~~~~~ai~~~~~----~~~~r~~Wil~~~~q~~L~~~qi~wt~ 107 (448)
|..-|+++|.+++.. -+.++.|+. .++| .|+|+.++.|+.+|.. +..++.+|+.+||+|++|++.|++||.
T Consensus 383 S~eGE~v~~~~~v~~~~~~~ve~WL~~le~~m~~tl~~~~~~~~~~~~~~~~~~~~~~~~w~~~~p~Qv~l~~~qi~wT~ 462 (3245)
T 3vkg_A 383 SAEGETVTFKKPISIANGPKIHEWLTMVESEMKSTLATLLSESLQHFNQVDVNDHSKYSEWVDNYPTQLVLLTSQIVWST 462 (3245)
T ss_dssp CTTSCEEEEEEEEESSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTCHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccHHHHHHHCcHHHHHHHHHheeHH
Confidence 333367777787743 478899994 6777 7899999999999873 234688999999999999999999999
Q ss_pred HHHHHHHHHHc---cchHHHHHHHHHhcchhhhhhh
Q psy17621 108 EVENVFSKIRA---GNDRAMKDYLGAQNAQLDALVV 140 (448)
Q Consensus 108 EVe~i~~~I~A---g~E~alke~lkk~~~ql~~l~f 140 (448)
+|+.++..... +.+.+++++.+++..+++.++.
T Consensus 463 ~ve~al~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~ 498 (3245)
T 3vkg_A 463 QVDQALGGGTLQQSKIQEQLQSIEQTTQMILNNLAD 498 (3245)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999975322 2456899999988888887653
No 4
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.06 E-value=9.2e-05 Score=91.41 Aligned_cols=90 Identities=11% Similarity=0.034 Sum_probs=69.2
Q ss_pred CCccchHHHHhHhcccc--ccccccc--cccc-cchhhHHHHHHHhhcCCCCCccccccccchhhhhhcccchhHHHHHH
Q psy17621 37 GEGMDFLAFGKILSGLS--QCGAWGC--FDMM-TANRYWTKKAIYDFGKTSKPRTEWMLDNIGMTVLAANGVWWTAEVEN 111 (448)
Q Consensus 37 ~e~~ey~~f~k~~~~~~--~~~~W~~--~d~~-~s~R~~~~~ai~~~~~~~~~r~~Wil~~~~q~~L~~~qi~wt~EVe~ 111 (448)
|..-|++.|.+.+...+ .++.|+. .++| .|+|+.++.|+.+|... .++.+|+.+||+|+++++.|++||.+||+
T Consensus 440 s~egE~v~~~~~v~~~~~~~ve~WL~~le~~m~~tl~~~~~~~~~~~~~~-~~~~~w~~~~p~Qv~l~~~qi~wt~~ve~ 518 (2695)
T 4akg_A 440 SVEGEVLNLNEKIELKDSIQAQEWLNILDTEIKLSVFTQFRDCLGQIKDG-TDIEVVVSKYIFQAILLSAQVMWTELVEK 518 (2695)
T ss_dssp ETTSCEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeCCceecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CcHHHHHHHChHHHHHHHHHHHHHHHHHH
Confidence 33346677778776544 6799994 6777 78999999999998862 46889999999999999999999999999
Q ss_pred HHHHHHccchHHHHHHHHH
Q psy17621 112 VFSKIRAGNDRAMKDYLGA 130 (448)
Q Consensus 112 i~~~I~Ag~E~alke~lkk 130 (448)
++.. +...++++++++
T Consensus 519 a~~~---~~~~~~~~~~~~ 534 (2695)
T 4akg_A 519 CLQT---NQFSKYWKEVDM 534 (2695)
T ss_dssp HHHH---TCHHHHHHHHHH
T ss_pred HHHh---ccHHHHHHHHHH
Confidence 9864 333344444443
No 5
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=41.20 E-value=25 Score=27.36 Aligned_cols=44 Identities=11% Similarity=0.446 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhcccCCeeEecCcHHHHHHhcCCChhHHHHHHHhh
Q psy17621 342 ACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSSPTAIQEHIVKM 388 (448)
Q Consensus 342 ~i~k~L~~yLe~kR~~FPRFyFlSd~eLL~ils~~~p~~i~~~l~kl 388 (448)
.+.+.+-+||+.+...=|+||| .|+..++....|..+.+.+..|
T Consensus 3 e~K~~Ile~l~~k~~~KskfYf---~D~~k~~P~~k~r~vKK~~~~L 46 (78)
T 1ucr_A 3 EAKQKVVDFLNSKSGSKSKFYF---NDFTDLFPDMKQREVKKILTAL 46 (78)
T ss_dssp HHHHHHHHHHSSHHHHSSCEEH---HHHHHHCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchH---HHHHHHccccCHHHHHHHHHHH
Confidence 4567788899999888899999 8899999888888888888886
No 6
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=34.02 E-value=2.7e+02 Score=25.25 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=27.2
Q ss_pred HHHHhccCC-ceeeecccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy17621 310 IMWETHKNP-RVIEQCLVPNRLEHLEQLKDGLEACEKSLQDYL 351 (448)
Q Consensus 310 im~~~~~~p-~v~~~~~~~~~~~~L~~~~~~L~~i~k~L~~yL 351 (448)
.+..++... ..+++..-.++++.|+.+.+.++.+-..|...+
T Consensus 181 ~~~~Lf~~e~d~i~~i~~keI~~~Le~~aD~~Edva~~l~~Iv 223 (227)
T 3l39_A 181 FITKLFEEEKDCIELIKIKEIMHELEKTTDAAEHVGKILKNLI 223 (227)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455554333 344555556778888888888888877776544
No 7
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=29.56 E-value=44 Score=20.03 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=17.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHH
Q psy17621 327 PNRLEHLEQLKDGLEACEKSLQ 348 (448)
Q Consensus 327 ~~~~~~L~~~~~~L~~i~k~L~ 348 (448)
+++.+.|+.+++.|.+++|.|.
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3567788888999988888775
No 8
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.24 E-value=1.9e+02 Score=22.43 Aligned_cols=61 Identities=25% Similarity=0.361 Sum_probs=42.5
Q ss_pred cCCHHHHHHHHHHHHHHHhhhhcCcC-C-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17621 150 LGDLSEMLLQLEDSCMNLQSMAGSAY-I-GPFLPVVQEWEKRLSVVSEVLYTWIQLQRKWLYLEGVE 214 (448)
Q Consensus 150 l~~~~el~~~led~~~~L~~m~~S~~-~-~~f~~~i~~w~~kL~~~~~il~~w~~vQ~~W~~Le~if 214 (448)
+..+..-++.|+..+..|+.-.+.|- | .++ ..+......+..+..-|+. .=.+|.+|+.+=
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~~y~~d~-~~~~~l~~~l~~~e~eLe~---~~erWeeLe~~~ 86 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADASFFSQPH-EQTQKVLADMAAAEQELEQ---AFERWEYLEALK 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhH
Confidence 45567779999999999998888773 3 333 4666666666666655554 346788888763
No 9
>2uuy_B Tryptase inhibitor; calcium, zymogen, protease, hydrolase, digestion, metal- binding, serine protease; 1.15A {Rhipicephalus appendiculatus} SCOP: g.8.1.3 PDB: 2lfk_A 2lfl_A 2uux_A
Probab=24.22 E-value=20 Score=25.77 Aligned_cols=13 Identities=15% Similarity=0.649 Sum_probs=9.9
Q ss_pred hcccCCeeEecCc
Q psy17621 354 KRNAFPRFFFISD 366 (448)
Q Consensus 354 kR~~FPRFyFlSd 366 (448)
-|..||||||=+.
T Consensus 15 C~a~~~r~yyn~~ 27 (52)
T 2uuy_B 15 CKARFTRYYCMGN 27 (52)
T ss_dssp BCCCEEEEEEETT
T ss_pred ccCceeeEEEccc
Confidence 3778999999543
No 10
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=18.11 E-value=91 Score=21.87 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhhcccCC
Q psy17621 337 KDGLEACEKSLQDYLTDKRNAFP 359 (448)
Q Consensus 337 ~~~L~~i~k~L~~yLe~kR~~FP 359 (448)
+++|+.-+++|...=|-+|..||
T Consensus 12 ~eqlehrerslqtlrdi~r~~~p 34 (55)
T 3sl9_C 12 QEQLEHRERSLQTLRDIQRMLFP 34 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 46677888888888888888877
Done!