Query psy17621
Match_columns 448
No_of_seqs 300 out of 1302
Neff 6.5
Searched_HMMs 13730
Date Fri Aug 16 18:45:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17621.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17621hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ucra_ a.4.5.45 (A:) Dissimil 32.3 20 0.0015 25.6 3.6 56 341-400 2-57 (74)
2 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 15.4 1E+02 0.0073 21.2 4.4 33 316-348 18-50 (67)
3 d1gqea_ e.38.1.1 (A:) Polypept 14.7 2.1E+02 0.015 25.9 8.1 36 178-214 3-38 (362)
4 d1x4pa1 a.217.1.1 (A:8-60) Arg 14.3 8.7 0.00063 25.4 -1.5 15 357-371 26-40 (53)
5 d1vr7a1 d.156.1.2 (A:2-118) S- 8.9 60 0.0044 24.7 1.6 31 19-49 65-95 (117)
6 d1sfea2 c.55.7.1 (A:12-92) Ada 8.3 1E+02 0.0073 21.3 2.6 21 339-359 55-75 (81)
7 d1iata_ c.80.1.2 (A:) Phosphog 7.2 3.7E+02 0.027 25.6 7.2 24 345-368 164-187 (556)
8 d2fqma1 d.378.1.1 (A:107-171) 7.2 1.6E+02 0.012 19.9 3.0 32 413-444 9-42 (65)
9 d1jw2a_ a.23.5.1 (A:) Hemolysi 7.1 61 0.0045 22.9 0.7 28 364-391 35-62 (72)
10 d1ez3a_ a.47.2.1 (A:) Syntaxin 6.7 4.4E+02 0.032 19.1 7.6 32 175-206 4-35 (124)
No 1
>d1ucra_ a.4.5.45 (A:) Dissimilatory sulfite reductase DsvD {Desulfovibrio vulgaris [TaxId: 881]}
Probab=32.31 E-value=20 Score=25.61 Aligned_cols=56 Identities=14% Similarity=0.397 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhcccCCeeEecCcHHHHHHhcCCChhHHHHHHHhhhhcccceeeccc
Q psy17621 341 EACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSSPTAIQEHIVKMFDNVQSLKMADS 400 (448)
Q Consensus 341 ~~i~k~L~~yLe~kR~~FPRFyFlSd~eLL~ils~~~p~~i~~~l~klF~~I~~l~~~~~ 400 (448)
+.+.+.+-+||+.|-..=+.||| .|+.+++...-|..+.+.+..|-. =..|+|=..
T Consensus 2 ee~k~~Ive~l~~k~~~KsKfYf---kDf~k~~Pd~k~R~vKK~~~~lV~-e~~L~ywSS 57 (74)
T d1ucra_ 2 EEAKQKVVDFLNSKSGSKSKFYF---NDFTDLFPDMKQREVKKILTALVN-DEVLEYWSS 57 (74)
T ss_dssp CHHHHHHHHHHSSHHHHSSCEEH---HHHHHHCTTSCHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred cHHHHHHHHHHHhccCCcCceeH---HHHHHHCCCccHHHHHHHHHHHhc-cceEEEEcC
Confidence 35677888999998888999999 789999888788888888888743 233444333
No 2
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.42 E-value=1e+02 Score=21.23 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=24.6
Q ss_pred cCCceeeecccccHHHHHHHHHHHHHHHHHHHH
Q psy17621 316 KNPRVIEQCLVPNRLEHLEQLKDGLEACEKSLQ 348 (448)
Q Consensus 316 ~~p~v~~~~~~~~~~~~L~~~~~~L~~i~k~L~ 348 (448)
..|..+++=+.+++-+.|+.++.++.+++..|+
T Consensus 18 sepP~m~l~sV~diE~eLerCk~~irrLeqel~ 50 (67)
T d1k1fa_ 18 SEPPRMELRSVGDIEQELERAKASIRRLEQEVN 50 (67)
T ss_dssp SCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhccHhHHHHHHHHHHHHHHHHHHHHH
Confidence 355566766667777888888888888887776
No 3
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=14.66 E-value=2.1e+02 Score=25.91 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=28.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17621 178 PFLPVVQEWEKRLSVVSEVLYTWIQLQRKWLYLEGVE 214 (448)
Q Consensus 178 ~f~~~i~~w~~kL~~~~~il~~w~~vQ~~W~~Le~if 214 (448)
+...++.+...++..+..+++ +...+.+.-.|+...
T Consensus 3 ~l~~~i~eL~~rl~~Lr~~fD-ld~kk~Rl~ELE~~l 38 (362)
T d1gqea_ 3 PVNNRIQDLTERSDVLRGYLD-YDAKKERLEEVNAEL 38 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHh
Confidence 466788888888888888876 777777777888776
No 4
>d1x4pa1 a.217.1.1 (A:8-60) Arginine/serine-rich-splicing factor 14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.33 E-value=8.7 Score=25.44 Aligned_cols=15 Identities=33% Similarity=0.747 Sum_probs=12.7
Q ss_pred cCCeeEecCcHHHHH
Q psy17621 357 AFPRFFFISDDELLS 371 (448)
Q Consensus 357 ~FPRFyFlSd~eLL~ 371 (448)
.-|-+.||||++-|+
T Consensus 26 ~~P~yWFLsde~SlE 40 (53)
T d1x4pa1 26 EDPAYWFLSDENSLE 40 (53)
T ss_dssp HSGGGCTTTCCSSSH
T ss_pred cCCCeEEeecccchh
Confidence 479999999998765
No 5
>d1vr7a1 d.156.1.2 (A:2-118) S-adenosylmethionine decarboxylase (SamDC, SpeH) {Thermotoga maritima [TaxId: 2336]}
Probab=8.93 E-value=60 Score=24.67 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=25.2
Q ss_pred cccccccCcceeeecccCCCccchHHHHhHh
Q psy17621 19 CSTTYKVSKWQTASRPNCGEGMDFLAFGKIL 49 (448)
Q Consensus 19 ~~~~~~~~~~~~~~~~n~~e~~ey~~f~k~~ 49 (448)
||-.|=..-.-.+++|.|++.+|.....+.+
T Consensus 65 siHTwPE~g~~~iDifsC~~~~~~~~~~~~l 95 (117)
T d1vr7a1 65 TIHTWPEYGYAAIDLFTCGEDVDPWKAFEHL 95 (117)
T ss_dssp EEEEEGGGTEEEEEEEEESTTCCHHHHHHHH
T ss_pred EEEEcCCCceEEEEEEeCCCCCCHHHHHHHH
Confidence 5778888889999999999999875555554
No 6
>d1sfea2 c.55.7.1 (A:12-92) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=8.33 E-value=1e+02 Score=21.33 Aligned_cols=21 Identities=5% Similarity=0.131 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhcccCC
Q psy17621 339 GLEACEKSLQDYLTDKRNAFP 359 (448)
Q Consensus 339 ~L~~i~k~L~~yLe~kR~~FP 359 (448)
.+....+.|.+|++.+|..|.
T Consensus 55 ~l~~~~~ql~~yf~g~r~~f~ 75 (81)
T d1sfea2 55 MFQQHVREVIASLNQRDTPLT 75 (81)
T ss_dssp HHHHHHHHHHHHHHSSSCCCC
T ss_pred hhHHHHHHHHHHHhCCCCCCC
Confidence 477778889999999999873
No 7
>d1iata_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.19 E-value=3.7e+02 Score=25.55 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=16.4
Q ss_pred HHHHHHHHhhcccCCeeEecCcHH
Q psy17621 345 KSLQDYLTDKRNAFPRFFFISDDE 368 (448)
Q Consensus 345 k~L~~yLe~kR~~FPRFyFlSd~e 368 (448)
+.+.+.|...+..-|++||++|-|
T Consensus 164 ~~l~~al~~~~~~~~~~~fv~n~D 187 (556)
T d1iata_ 164 LMVTEALKPYSSGGPRVWYVSNID 187 (556)
T ss_dssp HHHHHHTGGGCTTCCEEEEECCSS
T ss_pred HHHHHHhhhhcccceEEEecCCch
Confidence 344555666666779999988644
No 8
>d2fqma1 d.378.1.1 (A:107-171) Phosphoprotein P (M1) {Vesicular stomatitis indiana virus [TaxId: 11277]}
Probab=7.17 E-value=1.6e+02 Score=19.92 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=24.4
Q ss_pred eCCC-CEEEccCCccCCC-CHHHHHHHHHHHHHH
Q psy17621 413 SCEN-EVMDFRTPQLTFG-EIEQWMTRVLDEMMT 444 (448)
Q Consensus 413 S~eG-E~v~~~~~v~~~g-~ve~WL~~le~~mr~ 444 (448)
|..| -.+.|.-|+-+++ +-+.|+..++.-.+.
T Consensus 9 ~~g~~KsL~Lf~P~gLt~~Q~~QW~~TIeav~qS 42 (65)
T d2fqma1 9 SDEHGKTLRLTLPEGLSGEQKSQWMLTIKAVVQS 42 (65)
T ss_dssp EETTEEEEEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCceEEEeCCCCcchHHHHHHHHHHHHHHhh
Confidence 4444 5788888998886 788999999876654
No 9
>d1jw2a_ a.23.5.1 (A:) Hemolysin expression modulating protein HHA {Escherichia coli [TaxId: 562]}
Probab=7.09 E-value=61 Score=22.90 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=16.2
Q ss_pred cCcHHHHHHhcCCChhHHHHHHHhhhhc
Q psy17621 364 ISDDELLSILGSSSPTAIQEHIVKMFDN 391 (448)
Q Consensus 364 lSd~eLL~ils~~~p~~i~~~l~klF~~ 391 (448)
|+++|+..+.++-|.....--..|+|+.
T Consensus 35 L~~~E~~~f~~AaDHR~AELtm~KLyDk 62 (72)
T d1jw2a_ 35 LSDNELAVFYSAADHRLAELTMNKLYDK 62 (72)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHSSSCCSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 5667777777665444433345666663
No 10
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.72 E-value=4.4e+02 Score=19.11 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=19.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17621 175 YIGPFLPVVQEWEKRLSVVSEVLYTWIQLQRK 206 (448)
Q Consensus 175 ~~~~f~~~i~~w~~kL~~~~~il~~w~~vQ~~ 206 (448)
|...|..+|..-...+..+...+......+..
T Consensus 4 ~m~~Ff~eV~~Ir~~I~~i~~~v~~i~~~~~~ 35 (124)
T d1ez3a_ 4 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSA 35 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666666666666655544
Done!