RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17621
(448 letters)
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 219 bits (559), Expect = 1e-62
Identities = 54/306 (17%), Positives = 104/306 (33%), Gaps = 86/306 (28%)
Query: 144 EDRGFQLGDLSEMLLQLEDSCMNLQSMAGSAYIGPFLPVVQEWEKRLSVVSEVLYTWIQL 203
+ + + ++ L SM S Y F + E +L+ +SE+ W+++
Sbjct: 245 SSGLKLVREWDVLEQACKEDLEELVSMKASNYYKIFEQDCLDLESKLTKLSEIQVNWVEV 304
Query: 204 QRKWLYLEGVEDELKTVKRWSSDIREMPQCKALEKYLKDFKKSVALFVELKHEALR---- 259
Q WL L G+ E + DI+ L E +
Sbjct: 305 QFYWLDLYGILGE-------NLDIQN----------------------FLPLETSKFKSL 335
Query: 260 ERHWTELMKKTGVEDELKTVKRWSSDIREMPQCKALEKYLKDFKKSVALFIMWETHKNPR 319
+ + + +
Sbjct: 336 TSEYKMITTR--------------------------------------------AFQLDT 351
Query: 320 VIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSS-P 378
IE +PN L+ D L+ + SL +L +R FPRF+F+ +D+LL I+GS
Sbjct: 352 TIEVIHIPNFDTTLKLTIDSLKMIKSSLSTFLERQRRQFPRFYFLGNDDLLKIIGSGKHH 411
Query: 379 TAIQEHIVKMFDNVQSLKMADSESPGVKTISAMISCENEVMDFRTPQLTFG--EIEQWMT 436
+ + + KMF +++S+ + I+ + S E EV++ + ++W+
Sbjct: 412 DQVSKFMKKMFGSIESIIFLE------DFITGVRSVEGEVLNLNEKIELKDSIQAQEWLN 465
Query: 437 RVLDEM 442
+ E+
Sbjct: 466 ILDTEI 471
Score = 60.6 bits (147), Expect = 6e-10
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 35 NCGEGMDFLAFGKILSGLSQCGAWGCFD 62
NC + D+ ++L G++Q GAWGCFD
Sbjct: 677 NCDDSFDYQVLSRLLVGITQIGAWGCFD 704
Score = 54.5 bits (131), Expect = 5e-08
Identities = 12/101 (11%), Positives = 29/101 (28%), Gaps = 7/101 (6%)
Query: 180 LPVVQEWEKRLSVVSEVLYTWIQLQRKWLYLEGVEDEL-------KTVKRWSSDIREMPQ 232
P + + +++ + + K L G E V + +
Sbjct: 51 FPNLPYYIDGDVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIAY 110
Query: 233 CKALEKYLKDFKKSVALFVELKHEALRERHWTELMKKTGVE 273
K E DF + +++ + L + + T +
Sbjct: 111 SKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPD 151
Score = 52.9 bits (127), Expect = 2e-07
Identities = 11/83 (13%), Positives = 23/83 (27%), Gaps = 7/83 (8%)
Query: 63 MMTANRYWTKKAIYDFGKTSKPRTEWMLDNIGMTVLAANGVWWTAEVENVFSKIRAGNDR 122
+ + + + K + I +L + V WT VE
Sbjct: 471 IKLSVFTQFRDCLGQI-KDGTDIEVVVSKYIFQAILLSAQVMWTELVEKCLQT------N 523
Query: 123 AMKDYLGAQNAQLDALVVKKGED 145
Y + ++ L+ K +
Sbjct: 524 QFSKYWKEVDMKIKGLLDKLNKS 546
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 218 bits (556), Expect = 2e-62
Identities = 71/306 (23%), Positives = 120/306 (39%), Gaps = 84/306 (27%)
Query: 144 EDRGFQLGDLSEMLLQLEDSCMNLQSMAGSAYIGPFLPVVQEWEKRLSVVSEVLYTWIQL 203
+ + + ++ +L + ++ +M S Y F W+ RL+ V +L WI +
Sbjct: 186 QRKCKLVRGWDDLFNKLAEHLNSISAMKMSPYYKVFEEEANHWDDRLNKVRSLLDVWIDV 245
Query: 204 QRKWLYLEGVEDELKTVKRWSSDIREMPQCKALEKYLKDFKKSVALFVELKHEALR---- 259
QR+W+YLEG + S DI + L E+ R
Sbjct: 246 QRRWVYLEG-------IFSGSGDINQ----------------------LLPAESTRFKSI 276
Query: 260 ERHWTELMKKTGVEDELKTVKRWSSDIREMPQCKALEKYLKDFKKSVALFIMWETHKNPR 319
+ ++KK P
Sbjct: 277 NSEFIAILKK--------------------------------------------VSGAPL 292
Query: 320 VIEQCLVPNRLEHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSS-P 378
++E + + +E+L D L +K+L +YL +R+AF RF+F+ D++LL I+G+S
Sbjct: 293 ILEVLAIERIQQTMERLSDLLGKVQKALGEYLERQRSAFARFYFVGDEDLLEIIGNSKDI 352
Query: 379 TAIQEHIVKMFDNVQSLKMADSESPGVKTISAMISCENEVMDFRTPQLT--FGEIEQWMT 436
IQ+H KMF + +L + D + TI M S E E + F+ P +I +W+T
Sbjct: 353 IKIQKHFRKMFAGLANLTLDDEK----TTIIGMSSAEGETVTFKKPISIANGPKIHEWLT 408
Query: 437 RVLDEM 442
V EM
Sbjct: 409 MVESEM 414
Score = 64.9 bits (158), Expect = 3e-11
Identities = 10/84 (11%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 63 MMTANRYWTKKAIYDFGKT----SKPRTEWMLDNIGMTVLAANGVWWTAEVENVFSKIRA 118
M + +++ F + +EW+ + VL + + W+ +V+
Sbjct: 414 MKSTLATLLSESLQHFNQVDVNDHSKYSEWVDNYPTQLVLLTSQIVWSTQVDQALGGGTL 473
Query: 119 GNDR---AMKDYLGAQNAQLDALV 139
+ ++ L+ L
Sbjct: 474 QQSKIQEQLQSIEQTTQMILNNLA 497
Score = 59.9 bits (145), Expect = 1e-09
Identities = 17/28 (60%), Positives = 18/28 (64%)
Query: 35 NCGEGMDFLAFGKILSGLSQCGAWGCFD 62
C EG D A +I GL QCGAWGCFD
Sbjct: 636 CCDEGFDLQAMSRIFVGLCQCGAWGCFD 663
Score = 58.8 bits (142), Expect = 3e-09
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 183 VQEWEKRLSVVSEVLYTWIQLQRKWLYLEGVEDELKTVKRWSSDIREMPQCKALEKYLKD 242
+ + + + E W + + + + +ED L+ +K + IR+ + +K
Sbjct: 41 LSNTWQEIDSLKETA--WSAIIPRKV-RKSLEDTLQKLKNLPNRIRQYSAFDHAQNLIKI 97
Query: 243 FKKSVALFVELKHEALRERHWTELMKKTGVE 273
+ K A+ +L EA+++RHW L K+
Sbjct: 98 YLKGNAIITDLHSEAIKDRHWKILKKRLNTN 128
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.3 bits (145), Expect = 8e-10
Identities = 71/453 (15%), Positives = 131/453 (28%), Gaps = 140/453 (30%)
Query: 40 MDF------LAFGKILSGLSQ--CGAWGCFDMMTANRYWTKKAIYDFGKTSKPRTE---- 87
MDF + ILS + C D+ + K D SK
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 88 --WMLDNIGM--------TVLAANGVWWTAEVENVFSKIRA-GNDRAM--KDYLGAQN-A 133
W L + VL N + + S I+ +M + Y+ ++
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKF-------LMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 134 QLDALVVKKGE-DRGFQLGDLSEMLLQLEDSC-MNLQSMAGSAYIGPFLPVVQEWEKRLS 191
D V K R L + LL+L + + + + GS G K +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS---G----------K--T 164
Query: 192 V-VSEVLYTWIQLQRK------WLYLEGVEDELKTVKRWSS--DIREMPQ--CKALEKYL 240
+V + ++Q K WL +K +S + EM Q ++
Sbjct: 165 WVALDVCLS-YKVQCKMDFKIFWL----------NLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 241 K---DFKKSVALFVELKHEALRERHWTELMKKTG--VEDELKTVKRWSS-DIREMPQCKA 294
D ++ L + LR R + V ++ K W++ ++ CK
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELR-RLLKSKPYENCLLVLLNVQNAKAWNAFNL----SCKI 268
Query: 295 L----------------------EKYLKDF--KKSVALFIMW----------ETHK-NPR 319
L + + + +L + + E NPR
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 320 VIEQCLV-------PNRLEH-----LEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDD 367
+ ++ ++ ++L +E+ L+ + R F R
Sbjct: 329 RL--SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA--EYRKMFDRLSVFPPS 384
Query: 368 -----ELLSILGSSSPTAIQEHIVKMFDNVQSL 395
LLS++ + +V SL
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSL 416
Score = 59.9 bits (144), Expect = 1e-09
Identities = 47/307 (15%), Positives = 101/307 (32%), Gaps = 104/307 (33%)
Query: 233 CKALEKYLKDF--KKSVALFVELKHEALRERH--WTELMKKTG-----VEDELKTVKRW- 282
CK ++ K K+ + + K WT L K+ VE+ L+ ++
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 283 SSDIREMPQCKAL--EKYLKDFKKSVALFIMWETHKNPRVIEQCLVPNRLEHLEQLKDGL 340
S I+ + ++ Y++ + + + +V + V RL+ +L+ L
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDR---------LYNDNQVFAKYNVS-RLQPYLKLRQAL 144
Query: 341 EA--------------CEKS------LQDYLTDKRNAFPRFFFIS------DDELLSIL- 373
K+ Y + F + F+++ + +L +L
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEMLQ 203
Query: 374 ---------------GSSSPT----AIQEHIVKMF------------DNVQSLKMADSES 402
SS+ +IQ + ++ NVQ+ K ++ +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 403 PGVKTISAMISCENEVMDFRTPQ-------------LTFGEIEQWMTRVLD--------E 441
K + + + +V DF + LT E++ + + LD E
Sbjct: 264 LSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 442 MMTGSPL 448
++T +P
Sbjct: 322 VLTTNPR 328
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles,
endocytosis/exocytosis complex; 2.40A {Saccharomyces
cerevisiae}
Length = 399
Score = 34.0 bits (77), Expect = 0.098
Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 23/203 (11%)
Query: 221 KRWSSDIREMPQCKALEKYLKDFKKSVALFVELKHEALRERHWTELMKKTGVEDELKTVK 280
K W + L++YL D K + + L ++ +T + L +
Sbjct: 212 KTWYMGSQAQQIADTLDEYLLDIKPQM-------NSVLFVNFIDNVIGET-IIKFLTALS 263
Query: 281 RWSSDIREMPQCKALEKYLKDFKKSVALFIMWETHKNPRVIEQCLVPNRLEHLEQLKDGL 340
S + K LE +DF+ LF + + L+ +E D
Sbjct: 264 FEHSFKNKNN--KFLEAMKRDFEIFYQLF---VKVLDGNESKDTLITQNFTVMEFFMDLS 318
Query: 341 EACEKSLQDYLTDKRNAFPRFFFISDDELLSIL------GSSSPTAIQEHIVKMFDNVQS 394
S+ D + D L+ IL SS I + +M +
Sbjct: 319 CEPIDSILDIWQKYLEVYW---DSRIDLLVGILKCRKDVSSSERKKIVQQATEMLHEYRR 375
Query: 395 LKMADSESPGVKTISAMISCENE 417
M + T+ E E
Sbjct: 376 -NMEANGVDREPTLMRRFVLEFE 397
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.22
Identities = 38/219 (17%), Positives = 58/219 (26%), Gaps = 90/219 (41%)
Query: 94 GM------TVLAANGVWWTAEVENVFSKIRAGNDRAMKDYLG-------AQNAQLDALVV 140
GM T AA VW RA D KD G N L +
Sbjct: 1630 GMGMDLYKTSKAAQDVW-----N------RA--DNHFKDTYGFSILDIVINNPV--NLTI 1674
Query: 141 KKGEDRGFQLGDLSEMLLQLEDSCMNLQSMAGSAYI---GPFLPVVQEWEKRLSVVSEVL 197
G ++G ++ + N +M + + +E + +
Sbjct: 1675 HFGGEKGKRIRE-------------NYSAMIFETIVDGKLKTEKIFKEINEHST-----S 1716
Query: 198 YTWIQLQRKWLYLEGVEDEL-KTVKRWSSDIREMPQCKALEKYLKDFKKSVALFVELKHE 256
YT+ + L T + Q AL A F +LK +
Sbjct: 1717 YTF----------RSEKGLLSAT---------QFTQ-PAL------TLMEKAAFEDLKSK 1750
Query: 257 ALRER------H----WTELMKKTGV---EDELKTV-KR 281
L H + L V E ++ V R
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR 1789
Score = 32.7 bits (74), Expect = 0.30
Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 43/129 (33%)
Query: 314 THKNPRVIEQC-LVPNRL-EHLEQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLS 371
+H + +E LVP QL++ K L + T+ F +DDE +
Sbjct: 12 SHGS---LEHVLLVPTASFFIASQLQE---QFNKILPE-PTEG--------FAADDEPTT 56
Query: 372 I-------LG----------SSSPTAIQEHIVKMFD-------NVQSL--KMADSESPGV 405
LG + + F+ ++ +L K+ +
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 406 KTISAMISC 414
+I
Sbjct: 117 VKTKELIKN 125
Score = 32.7 bits (74), Expect = 0.33
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 347 LQD-YLTDKRNAFPRFFFISDDELLSILGSSSPTAIQEHIVKMFDNVQSLKMADSESPGV 405
L+D Y T E LS L + ++ + + ++ L+ +
Sbjct: 173 LRDLYQTYH--VLVGDLIKFSAETLSEL-IRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 406 KTISAMISC 414
+S ISC
Sbjct: 230 YLLSIPISC 238
Score = 28.5 bits (63), Expect = 6.4
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 34/102 (33%)
Query: 342 ACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSS-----PTAIQEHIVKMFDNVQSLK 396
A S + + R A FFI G T++ I++
Sbjct: 284 AETDSWESFFVSVRKAITVLFFI---------GVRCYEAYPNTSLPPSILE--------- 325
Query: 397 MADSESPGVKTISAMISCENEVMDFRTPQLTFGEIEQWMTRV 438
DS S M+S N LT +++ ++ +
Sbjct: 326 --DSLENNEGVPSPMLSISN---------LTQEQVQDYVNKT 356
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.49
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 27/53 (50%)
Query: 334 EQLKDGLEACEKSLQDYLTDKRNAFPRFFFISDDELLSILGSSSPT-AIQEHI 385
+ LK L+A SL+ Y +DD S+P AI+ +
Sbjct: 20 QALKK-LQA---SLKLY--------------ADD--------SAPALAIKATM 46
Score = 30.7 bits (68), Expect = 0.59
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 382 QEHIVKMFDNVQSLKMADSES-PGVKTISAMI 412
Q +K SLK+ +S P + I A +
Sbjct: 20 QA--LKKLQA--SLKLYADDSAPAL-AIKATM 46
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil,
contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1
a.7.1.1
Length = 250
Score = 31.2 bits (70), Expect = 0.55
Identities = 12/63 (19%), Positives = 25/63 (39%)
Query: 288 EMPQCKALEKYLKDFKKSVALFIMWETHKNPRVIEQCLVPNRLEHLEQLKDGLEACEKSL 347
E+ + + LE + F++ + W K ++++ L + L EA E L
Sbjct: 5 EIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDL 64
Query: 348 QDY 350
+
Sbjct: 65 AAH 67
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure
initiative, nysgrc, P biology, NEW YORK structural
genomics research consortium; HET: MSE; 1.40A {Homo
sapiens} PDB: 1lvf_A
Length = 130
Score = 28.4 bits (63), Expect = 2.5
Identities = 18/111 (16%), Positives = 44/111 (39%), Gaps = 19/111 (17%)
Query: 178 PFLPVVQEWEKRLSVVSEVLYTWIQLQRKWLYLEGVEDELKTVKRWSSDIREMPQCKALE 237
PF V E +K ++ + W +L + E + + ++++R +++E
Sbjct: 28 PFFVVRGEVQKAVNTARGLYQRWCELLQ-----ESAAVGREELDWTTNELRNG--LRSIE 80
Query: 238 KYLKDFKKSVALFVELKHEALRERHWTELMKKTGVEDELKTVKRWSSDIRE 288
L+D ++++ + EA + +L+ K + +RE
Sbjct: 81 WDLEDLEETIGIV-----EANPGKFKLP-------AGDLQERKVFVERMRE 119
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 28.6 bits (65), Expect = 3.2
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 228 REMPQCKALEKYLKDFKK-SVALFVELKHEALRER 261
R + E+ +KDF LF + E + +R
Sbjct: 93 RNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQR 127
>3jrt_A Integron cassette protein VPC_CASS2; mobIle metagenome, structural
genomics, PSI-2 protein structure initiative; 2.30A
{Vibrio paracholerae}
Length = 192
Score = 28.2 bits (62), Expect = 3.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 377 SPTAIQEHIVKMFDNVQSLKMADSESP 403
P +QE I+KMFD + + D P
Sbjct: 139 KPAEVQEEIIKMFDGNFADEFLDWICP 165
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 28.9 bits (65), Expect = 4.4
Identities = 15/137 (10%), Positives = 46/137 (33%), Gaps = 2/137 (1%)
Query: 221 KRWSSDIREMPQCKALEKYLKDFKKSVALFVELKHEALRERHWTELMKKTGVEDELKTVK 280
+ +++ +R ++K+ + + + ++ + + +
Sbjct: 807 RCYATFLRRTRAAIIIQKFQRMYVVRKR-YQCMRDATIALQALLRGYLVRNKYQMMLREH 865
Query: 281 RWSSDIREMPQCKALEKYLKDFKKSVALFIMWETHKNPRVIEQ-CLVPNRLEHLEQLKDG 339
+ + + A Y + K V L + R +++ + +E ++L G
Sbjct: 866 KSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIG 925
Query: 340 LEACEKSLQDYLTDKRN 356
LE LQ + ++
Sbjct: 926 LENKIMQLQRKIDEQNK 942
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 28.8 bits (64), Expect = 4.6
Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 1/91 (1%)
Query: 218 KTVKRWSSDIREMPQCKALEKYLKDFKKSVALFVELKHEALRERHWTELMKKTGVEDELK 277
T++ M + + + D + F L + + + V +
Sbjct: 69 DTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDE 128
Query: 278 TVKRWSSDIREMPQCK-ALEKYLKDFKKSVA 307
+ + ++ + K +L+K L +KK
Sbjct: 129 KISQIEKLGIKVSEHKESLQKILHGYKKGTL 159
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 28.8 bits (64), Expect = 4.8
Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 1/91 (1%)
Query: 218 KTVKRWSSDIREMPQCKALEKYLKDFKKSVALFVELKHEALRERHWTELMKKTGVEDELK 277
T++ M + + + D + F L + + + V +
Sbjct: 69 DTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDE 128
Query: 278 TVKRWSSDIREMPQCK-ALEKYLKDFKKSVA 307
+ + ++ + K +L+K L +KK
Sbjct: 129 KISQIEKLGIKVSEHKESLQKILHGYKKGTL 159
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 27.9 bits (63), Expect = 4.8
Identities = 8/34 (23%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 228 REMPQCKALEKYLKDFKKSVALFVELKHEALRER 261
RE+ Q + E+ + + ++ L+V+ E + +R
Sbjct: 98 REVQQGEEFERRIG--QPTLLLYVDAGPETMTQR 129
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET:
AMP; 2.3A {Homo sapiens}
Length = 199
Score = 27.9 bits (63), Expect = 6.1
Identities = 5/34 (14%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 228 REMPQCKALEKYLKDFKKSVALFVELKHEALRER 261
RE+ Q + + + D + + ++ + + R
Sbjct: 101 REVKQGEEFGRRIGD--PQLVICMDCSADTMTNR 132
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 28.0 bits (62), Expect = 6.7
Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 1/91 (1%)
Query: 218 KTVKRWSSDIREMPQCKALEKYLKDFKKSVALFVELKHEALRERHWTELMKKTGVEDELK 277
T++ M + + + D + F L + + + V +
Sbjct: 69 DTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDE 128
Query: 278 TVKRWSSDIREMPQCK-ALEKYLKDFKKSVA 307
+ + ++ + K +L+K L +KK
Sbjct: 129 KISQIEKLGIKVSEHKESLQKILHGYKKGTL 159
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 27.5 bits (62), Expect = 7.3
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 228 REMPQCKALEKYLKDFKKSVALFVELKHEALRER 261
R+M Q + E+ + + K LF + + + ER
Sbjct: 106 RKMDQAISFERDIVESK--FILFFDCPEDIMLER 137
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic;
probable 2-haloalkanoic acid dehalogenase, hydrolase,
structural genomics; 2.40A {Sulfolobus tokodaii}
Length = 220
Score = 27.4 bits (61), Expect = 8.3
Identities = 10/45 (22%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 121 DRAMKDYLGAQNAQLDALVVKKGEDRG---FQLGDLSEMLLQLED 162
D DY+GA+ + +D +++ + + ++ +L E L ++E+
Sbjct: 172 DIYELDYIGAKRSYVDPILLDRYDFYPDVRDRVKNLREALQKIEE 216
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase;
CBM20 domain, starch-binding, hydrolase, STR genomics,
NPPSFA; 2.00A {Homo sapiens}
Length = 131
Score = 26.9 bits (59), Expect = 8.4
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 10/52 (19%)
Query: 282 WSSDIREMPQCKALE-KYLKDFKKSVA--------LFIMWETHKNPRVIEQC 324
W + I + + +++ +Y K + + WETH PR I
Sbjct: 57 WKATI-VLSRGVSVQYRYFKGYFLEPKTIGGPCQVIVHKWETHLQPRSITPL 107
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
conformational changes, transferase; 2.10A {Homo
sapiens} SCOP: c.37.1.1
Length = 196
Score = 27.1 bits (61), Expect = 10.0
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 228 REMPQCKALEKYLKDFKK-SVALFVELKHEALRER 261
R + K + S LF + +E ER
Sbjct: 96 RNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIER 130
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.408
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,081,315
Number of extensions: 416760
Number of successful extensions: 828
Number of sequences better than 10.0: 1
Number of HSP's gapped: 816
Number of HSP's successfully gapped: 42
Length of query: 448
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 351
Effective length of database: 3,993,456
Effective search space: 1401703056
Effective search space used: 1401703056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.0 bits)