RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17621
         (448 letters)



>d1b74a2 c.78.2.1 (A:106-252) Glutamate racemase {Aquifex pyrophilus
           [TaxId: 2714]}
          Length = 147

 Score = 32.2 bits (73), Expect = 0.058
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 8/93 (8%)

Query: 285 DIREMPQCKALEKYLKDFKKSVALFIMWETHKN--PRVIEQCLVPNRLEHLEQLKDGLEA 342
            +      K +E YLK+FK  +   I+  TH     + I++ L  +      ++ D  EA
Sbjct: 45  LLEGEITRKVVEHYLKEFKGKIDTLILGCTHYPLLKKEIKKFL-GDA-----EVVDSSEA 98

Query: 343 CEKSLQDYLTDKRNAFPRFFFISDDELLSILGS 375
              SL +++ D  ++    FF      L  L  
Sbjct: 99  LSLSLHNFIKDDGSSSLELFFTDLSPNLQFLIK 131


>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}
          Length = 250

 Score = 27.4 bits (59), Expect = 3.3
 Identities = 11/95 (11%), Positives = 21/95 (22%), Gaps = 2/95 (2%)

Query: 58  WGCFDMMTANRYWTKKAIYDFGKTSKPRTEWMLDNIGMTVLAANGVWWTAEVENVFSKIR 117
            G   + T      +      G       +            +  +   A  +       
Sbjct: 136 NGARFIATNPDTHGRGFYPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEE 195

Query: 118 AGN--DRAMKDYLGAQNAQLDALVVKKGEDRGFQL 150
                D    D L    A L+ ++V  G      +
Sbjct: 196 TVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDI 230


>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden
           pea (Pisum sativum) [TaxId: 3888]}
          Length = 261

 Score = 26.9 bits (58), Expect = 5.1
 Identities = 28/178 (15%), Positives = 54/178 (30%), Gaps = 10/178 (5%)

Query: 122 RAMKDYLGAQNAQLDALVVKK---GEDRG-FQLGDLS--EMLLQLEDSCMNLQSMAGSAY 175
           +    +L  +        VK     E  G   L D+S  +++LQ+            ++ 
Sbjct: 6   QTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASE 65

Query: 176 IGPFLPVVQEWEKRLSVVSEVLYTWIQLQRKW-LYLEGVEDELKTVKRWSSDIREMPQCK 234
           IG       E +  LSV+  ++    +    W  Y   +  E  +   WS +  +  Q  
Sbjct: 66  IGRVC---SELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGS 122

Query: 235 ALEKYLKDFKKSVALFVELKHEALRERHWTELMKKTGVEDELKTVKRWSSDIREMPQC 292
            L K     K+ V        + +   +         ++D         S      + 
Sbjct: 123 QLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRN 180


>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit,
           IlvH {Thermotoga maritima [TaxId: 2336]}
          Length = 78

 Score = 24.9 bits (55), Expect = 5.8
 Identities = 8/36 (22%), Positives = 21/36 (58%)

Query: 391 NVQSLKMADSESPGVKTISAMISCENEVMDFRTPQL 426
           N+ S+ + +SE+PG+  +  M+  +++ ++    Q 
Sbjct: 30  NISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQA 65


>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
           oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 665

 Score = 26.7 bits (58), Expect = 7.8
 Identities = 12/146 (8%), Positives = 39/146 (26%), Gaps = 19/146 (13%)

Query: 123 AMKDYLGAQNAQLDALVVKKGEDRGFQ-----LGDLSEMLLQLEDSCMNLQSMAGSAYIG 177
             +  +       D +     ++  ++     L D+    +         Q ++      
Sbjct: 24  RTEQLIAQTKQVYDTVGTIALKEVTYENCLQVLADIEVTYIVERTMLDFPQHVSSD---- 79

Query: 178 PFLPVVQEWEKRLSVVSEVLYTWIQLQRKWLYLEGVEDELKTV-KRWSSDIREMPQCKAL 236
                V+                +   R+ ++       +  + +    +  +    + L
Sbjct: 80  ---REVRAASTEADKKLSRFDIEM-SMREDVF-----QRIVHLQETCDLEKIKPEARRYL 130

Query: 237 EKYLKDFKKSVALFVELKHEALRERH 262
           EK +K  K++     E     ++   
Sbjct: 131 EKSIKMGKRNGLHLSEHIRNEIKSMK 156


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,755,154
Number of extensions: 82255
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 9
Length of query: 448
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 360
Effective length of database: 1,199,356
Effective search space: 431768160
Effective search space used: 431768160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.1 bits)