BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17622
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TNF|B Chain B, Lida From Legionella In Complex With Active Rab8a
Length = 384
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 96 IDVYGEDVEVDYRGYEVTVENFIRLLTATSVLT 128
++ G+D+E Y+ YE +E F +LLT + L+
Sbjct: 30 LERQGKDLEDKYKTYEENLEGFEKLLTDSEELS 62
>pdb|3TKL|B Chain B, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 267
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 96 IDVYGEDVEVDYRGYEVTVENFIRLLTATSVLT 128
++ G+D+E Y+ YE +E F +LLT + L+
Sbjct: 47 LERQGKDLEDKYKTYEENLEGFEKLLTDSEELS 79
>pdb|3SFV|B Chain B, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 344
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 96 IDVYGEDVEVDYRGYEVTVENFIRLLTATSVLT 128
++ G+D+E Y+ YE +E F +LLT + L+
Sbjct: 6 LERQGKDLEDKYKTYEENLEGFEKLLTDSEELS 38
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 29.3 bits (64), Expect = 1.5, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 112 VTVENFIRLLTATSVLTDEGSNIL-IYLT-------GHGGDGFLKFQDSEEVTSQELGDA 163
V++ENF T+ + D+GS ++ +YLT G D ++K D T ++ A
Sbjct: 375 VSMENFY-----TTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTATCEDFNYA 429
Query: 164 LEQMWQKRRYHEVRACNRY 182
+EQ ++ ++ N+Y
Sbjct: 430 MEQAYKMKKADNSANLNQY 448
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 29.3 bits (64), Expect = 1.5, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 112 VTVENFIRLLTATSVLTDEGSNIL-IYLT-------GHGGDGFLKFQDSEEVTSQELGDA 163
V++ENF T+ + D+GS ++ +YLT G D ++K D T ++ A
Sbjct: 374 VSMENFY-----TTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTATCEDFNYA 428
Query: 164 LEQMWQKRRYHEVRACNRY 182
+EQ ++ ++ N+Y
Sbjct: 429 MEQAYKMKKADNSANLNQY 447
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 29.3 bits (64), Expect = 1.6, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 112 VTVENFIRLLTATSVLTDEGSNIL-IYLT-------GHGGDGFLKFQDSEEVTSQELGDA 163
V++ENF T+ + D+GS ++ +YLT G D ++K D T ++ A
Sbjct: 375 VSMENFY-----TTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTATCEDFNYA 429
Query: 164 LEQMWQKRRYHEVRACNRY 182
+EQ ++ ++ N+Y
Sbjct: 430 MEQAYKMKKADNSANLNQY 448
>pdb|2HQ2|A Chain A, Structure Of The Escherichia Coli O157:h7 Heme Oxygenase
Chus In Complex With Heme
Length = 354
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 45 YRHVANVLSIYRSVKRLGIPDSHIILMIADDMACNPRNPRPATVFNNANQ 94
+R + +V + +KR + ++ADD+AC N A + +A Q
Sbjct: 198 WRAMTDVHQFFTLLKRHNLTRQQAFNLVADDLACKVSNSALAQILESAQQ 247
>pdb|1U9T|A Chain A, Crystal Structure Analysis Of Chus, An E. Coli Heme
Oxygenase
Length = 354
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 45 YRHVANVLSIYRSVKRLGIPDSHIILMIADDMACNPRNPRPATVFNNANQ 94
+R + +V + +KR + ++ADD+AC N A + +A Q
Sbjct: 198 WRAMTDVHQFFTLLKRHNLTRQQAFNLVADDLACKVSNSALAQILESAQQ 247
>pdb|3FTB|A Chain A, The Crystal Structure Of The Histidinol-Phosphate
Aminotransferase From Clostridium Acetobutylicum
pdb|3FTB|B Chain B, The Crystal Structure Of The Histidinol-Phosphate
Aminotransferase From Clostridium Acetobutylicum
pdb|3FTB|D Chain D, The Crystal Structure Of The Histidinol-Phosphate
Aminotransferase From Clostridium Acetobutylicum
pdb|3FTB|E Chain E, The Crystal Structure Of The Histidinol-Phosphate
Aminotransferase From Clostridium Acetobutylicum
Length = 361
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 85 PATVFNNANQHIDVYGEDVEVDYRGYEVTVENFIRLLTATSVLTDEGSNIL 135
P + NN ++ I G +V+YR ++EN+++L VL + S I+
Sbjct: 41 PKSFLNNIDEGIKNLGVYPDVNYRRLNKSIENYLKLKDIGIVLGNGASEII 91
>pdb|2OO3|A Chain A, Crystal Structure Of Protein Lpl1258 From Legionella
Pneumophila Str. Philadelphia 1, Pfam Duf519
Length = 283
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 135 LIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRR 172
L YL H G G +D + + ++E + + +W R
Sbjct: 37 LFYLETHSGRGIYDLKDKQSLKTEEYKEGINPVWLDRE 74
>pdb|4I95|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_00036)
From Bacteroides Eggerthii Dsm 20697 At 1.81 A
Resolution
pdb|4I95|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_00036)
From Bacteroides Eggerthii Dsm 20697 At 1.81 A
Resolution
Length = 142
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 87 TVFNNANQHIDVYGEDVEVDYRGYEVTVENFIRLLTATSVLTDEGSNILIYLTGHGGDGF 146
T+ + I YG ++ Y+ ++E I L D NIL + G GG +
Sbjct: 51 TIRPGTDAIITGYGTYRQISAAAYKESIEKNIHLPX-----LDNKDNILEFEXGAGGVXY 105
Query: 147 LKFQDSEEVTSQELGDALEQMWQK 170
LK+ +++ EL + W++
Sbjct: 106 LKYFIEKDLNGNELNTWFHETWKR 129
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 26.9 bits (58), Expect = 7.7, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 112 VTVENFIRLLTATSVLTDEGSNIL-IYLT-------GHGGDGFLKFQDSEEVTSQELGDA 163
V++ NF T+ + D+GS ++ +YLT G D ++K D T ++ A
Sbjct: 374 VSMANFY-----TTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTATCEDFNYA 428
Query: 164 LEQMWQKRRYHEVRACNRY 182
+EQ ++ ++ N+Y
Sbjct: 429 MEQAYKMKKADNSANLNQY 447
>pdb|3BPL|B Chain B, Crystal Structure Of The Il4-Il4r-Common Gamma Ternary
Complex
pdb|3BPN|B Chain B, Crystal Structure Of The Il4-Il4r-Il13ra Ternary Complex
pdb|3BPO|B Chain B, Crystal Structure Of The Il13-Il4r-Il13ra Ternary Complex
Length = 205
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 72 IADDMACNPRNPRPAT--VFNNANQHIDVYGEDVEVDYRGYEVT-VENFIRLLTAT 124
++D + NP P ++N+ ++++ E+ D+R Y+VT +E +R+ +T
Sbjct: 113 VSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYQVTYLEPSLRIAAST 168
>pdb|2B49|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase, Non-Receptor Type 3
Length = 287
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 78 CNPRNPRPATVFNNANQHIDVYGEDVEVDYRGYEVTVEN 116
C+ P P V N+ HI ED + Y E+ V N
Sbjct: 128 CHQYWPDPPDVMNHGGFHIQCQSEDCTIAYVSREMLVTN 166
>pdb|4EFP|A Chain A, Bombyx Mori Lipoprotein 7 Isolated From Its Natural Source
At 1.33 A Resolution
pdb|4EFP|B Chain B, Bombyx Mori Lipoprotein 7 Isolated From Its Natural Source
At 1.33 A Resolution
pdb|4EFQ|A Chain A, Bombyx Mori Lipoprotein 7 - Platinum Derivative At 1.94 A
Resolution
pdb|4EFQ|B Chain B, Bombyx Mori Lipoprotein 7 - Platinum Derivative At 1.94 A
Resolution
pdb|4EFR|A Chain A, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
pdb|4EFR|B Chain B, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
pdb|4EFR|C Chain C, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
pdb|4EFR|D Chain D, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
Length = 239
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 112 VTVENFIRLLTATSVLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKR 171
+ EN I+L+ L SN + HG DG L F D ++ TS ++ +W+
Sbjct: 84 IFAENAIKLMYKRDGLALTLSNDV-----HGNDGRLAFGDGKDKTSPKVSWKFIALWENN 138
Query: 172 R 172
+
Sbjct: 139 K 139
>pdb|3PUB|A Chain A, Crystal Structure Of The Bombyx Mori Low Molecular Weight
Lipoprotein 7 (Bmlp7)
pdb|3PUB|B Chain B, Crystal Structure Of The Bombyx Mori Low Molecular Weight
Lipoprotein 7 (Bmlp7)
Length = 251
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 112 VTVENFIRLLTATSVLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKR 171
+ EN I+L+ L SN + HG DG L F D ++ TS ++ +W+
Sbjct: 85 IFAENAIKLMYKRDGLALTLSNDV-----HGNDGRLAFGDGKDKTSPKVSWKFIALWENN 139
Query: 172 R 172
+
Sbjct: 140 K 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,116,569
Number of Sequences: 62578
Number of extensions: 244068
Number of successful extensions: 665
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 18
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)