Query psy17622
Match_columns 194
No_of_seqs 113 out of 347
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 18:47:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bij_A Uncharacterized protein 98.3 7.7E-07 2.6E-11 76.6 7.2 80 48-167 30-122 (285)
2 4af8_A Metacaspase MCA2; hydro 98.0 2.8E-05 9.5E-10 70.1 9.6 109 28-164 90-216 (367)
3 4f6o_A Metacaspase-1; rossmann 97.9 1.6E-05 5.6E-10 71.1 7.4 109 28-166 51-179 (350)
4 3uoa_B Mucosa-associated lymph 90.7 0.4 1.4E-05 43.3 6.1 64 112-178 49-123 (390)
5 2h54_A Caspase-1; allosteric s 87.8 1 3.5E-05 36.1 6.0 55 110-164 85-146 (178)
6 1pyo_A Caspase-2; apoptosis, c 77.6 2.7 9.1E-05 33.4 4.5 56 110-165 78-135 (167)
7 3h11_B Caspase-8; cell death, 69.7 3.3 0.00011 35.1 3.4 54 110-164 69-124 (271)
8 2fp3_A Caspase NC; apoptosis, 67.8 3.3 0.00011 35.9 3.1 56 109-164 103-164 (316)
9 1qtn_A Caspase-8; apoptosis, d 66.5 4.5 0.00015 31.9 3.4 55 110-164 75-130 (164)
10 4gdk_A Ubiquitin-like protein 65.7 4.3 0.00015 29.3 2.8 34 110-144 28-61 (91)
11 3e4c_A Caspase-1; zymogen, inf 63.1 6.6 0.00022 33.8 4.1 56 109-164 101-163 (302)
12 1m72_A Caspase-1; caspase, cys 62.9 4.2 0.00014 34.4 2.7 53 110-164 76-130 (272)
13 2j32_A Caspase-3; Pro-caspase3 61.8 4.7 0.00016 33.5 2.8 53 110-164 61-115 (250)
14 1nw9_B Caspase 9, apoptosis-re 60.0 5.6 0.00019 33.5 3.0 54 110-164 66-128 (277)
15 3od5_A Caspase-6; caspase doma 59.9 5.5 0.00019 33.8 3.0 53 110-164 66-120 (278)
16 1f1j_A Caspase-7 protease; cas 56.5 4.8 0.00016 34.8 2.0 53 110-164 114-168 (305)
17 1y51_A Phosphocarrier protein 53.4 14 0.00048 25.9 3.7 56 98-170 28-83 (88)
18 2dko_A Caspase-3; low barrier 52.3 7.1 0.00024 30.1 2.2 54 110-164 61-115 (146)
19 1kkl_H Phosphocarrier protein 52.2 14 0.00049 26.8 3.7 59 98-173 40-98 (100)
20 4ehd_A Caspase-3; caspase, apo 50.7 9.2 0.00031 32.5 2.8 53 110-164 89-143 (277)
21 3h11_A CAsp8 and FADD-like apo 49.5 14 0.00049 31.3 3.8 55 110-164 74-132 (272)
22 2nn3_C Caspase-1; cysteine pro 48.5 7.6 0.00026 33.7 2.0 53 110-164 104-158 (310)
23 3rui_B Autophagy-related prote 45.6 12 0.00043 28.1 2.6 30 109-139 54-83 (118)
24 2zjd_A Microtubule-associated 44.6 15 0.00052 28.1 3.0 32 109-141 60-91 (130)
25 3h9d_A ATG8, microtubule-assoc 43.6 13 0.00045 28.0 2.4 30 109-139 55-84 (119)
26 3sir_A Caspase; hydrolase; 2.6 43.3 12 0.0004 31.4 2.3 54 110-167 64-118 (259)
27 3p45_A Caspase-6; protease, hu 42.6 16 0.00055 29.3 2.9 53 110-164 89-143 (179)
28 3pg6_A E3 ubiquitin-protein li 42.3 27 0.00093 27.8 4.1 95 61-171 44-157 (159)
29 1eo6_A GATE-16, golgi-associat 40.2 14 0.00047 27.6 2.0 29 110-139 53-81 (117)
30 2r2q_A Gamma-aminobutyric acid 38.6 16 0.00055 26.9 2.2 29 110-139 52-80 (110)
31 3lub_A Putative creatinine ami 38.0 24 0.00081 29.4 3.4 39 105-145 82-124 (254)
32 2ql9_A Caspase-7; cysteine pro 37.0 15 0.00052 29.3 1.9 51 110-162 89-141 (173)
33 3m95_A Autophagy related prote 36.6 18 0.0006 27.6 2.1 30 109-139 60-89 (125)
34 1pch_A Phosphocarrier protein; 34.8 34 0.0012 24.0 3.4 56 98-170 27-82 (88)
35 1v7z_A Creatininase, creatinin 33.5 19 0.00065 30.0 2.1 38 105-144 82-123 (260)
36 3m7v_A Phosphopentomutase; str 32.6 32 0.0011 28.3 3.4 21 124-144 325-345 (413)
37 1ptf_A Histidine-containing ph 32.5 14 0.00048 25.9 0.9 55 98-169 28-82 (88)
38 3ccd_A Phosphocarrier protein 31.7 15 0.00051 25.6 1.0 40 98-140 28-67 (85)
39 1sph_A Histidine-containing ph 30.8 16 0.00053 25.7 0.9 55 98-169 28-82 (88)
40 1ka5_A Phosphocarrier protein 29.4 16 0.00056 25.6 0.9 40 98-140 28-67 (88)
41 3no4_A Creatininase, creatinin 29.2 33 0.0011 29.0 2.9 38 105-144 91-132 (267)
42 3le1_A Phosphotransferase syst 28.3 18 0.00062 25.4 0.9 57 98-171 28-84 (88)
43 3ca8_A Protein YDCF; two domai 27.2 93 0.0032 26.0 5.3 116 50-177 129-260 (266)
44 3w1s_C Ubiquitin-like protein 26.2 38 0.0013 24.3 2.3 31 110-144 31-61 (91)
45 3nhm_A Response regulator; pro 25.4 1.3E+02 0.0043 20.2 5.0 67 103-174 51-126 (133)
46 2w5q_A Processed glycerol phos 24.3 33 0.0011 29.8 2.1 14 130-143 248-261 (424)
47 3ihs_A Phosphocarrier protein 22.9 27 0.00093 25.7 1.0 40 98-140 52-91 (106)
48 2w8d_A Processed glycerol phos 22.9 37 0.0012 29.7 2.1 14 130-143 248-261 (436)
49 4gvo_A LMO2349 protein; struct 22.2 41 0.0014 25.9 2.0 35 143-177 196-230 (243)
50 1dcf_A ETR1 protein; beta-alph 22.1 1.9E+02 0.0064 19.5 6.7 65 103-172 54-131 (136)
51 1taz_A Calcium/calmodulin-depe 21.9 36 0.0012 30.0 1.8 25 39-63 78-103 (365)
No 1
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=98.35 E-value=7.7e-07 Score=76.56 Aligned_cols=80 Identities=19% Similarity=0.291 Sum_probs=60.2
Q ss_pred hhhhhhHHHHHHhcCCCCCcEEEEecCCCCCCCCCCCCCeeecCCCccccccCCCceeeccCCCCCHHHHHHHHccCccc
Q psy17622 48 VANVLSIYRSVKRLGIPDSHIILMIADDMACNPRNPRPATVFNNANQHIDVYGEDVEVDYRGYEVTVENFIRLLTATSVL 127 (194)
Q Consensus 48 qadv~~~Y~~L~~~Gi~denIIlm~~DD~a~~p~Np~pG~i~~~~~~~~nlY~~~v~IDY~g~~Vt~~~fl~vL~Gk~l~ 127 (194)
..|+..+.+.|++.|++ +++++.+ +.|.+++++.|..-.-.
T Consensus 30 ~nDa~~~~~~L~~~Gf~---v~~l~~~------------------------------------~~t~~~i~~al~~l~~~ 70 (285)
T 3bij_A 30 EADAEDMAAIAAERGFA---VTTLMTK------------------------------------AATRAKVIDAIGKAAKA 70 (285)
T ss_dssp HHHHHHHHHHHHHTTCE---EEEEEGG------------------------------------GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCc---eEEecCC------------------------------------ccCHHHHHHHHHHHHHh
Confidence 46899999999999997 5554422 15778888887542234
Q ss_pred cCCCccEEEEEeCCCC-------------CceeecCCCCccCHHHHHHHHHHH
Q psy17622 128 TDEGSNILIYLTGHGG-------------DGFLKFQDSEEVTSQELGDALEQM 167 (194)
Q Consensus 128 s~~~dnVfvY~tgHGg-------------~g~i~f~d~~~l~~~dL~~~l~~M 167 (194)
..++|.+||||+|||. +++|...|+ .|..+||.+.|+.|
T Consensus 71 ~~~~D~~~~yfSGHG~~~~~~~g~e~dg~~~~l~p~D~-~i~~~~l~~~l~~l 122 (285)
T 3bij_A 71 LGKGDIFMLSYSGHGGQVPDTSNDEPDGVDETWCLFDG-ELIDDELYALLGKF 122 (285)
T ss_dssp CCTTCEEEEEEESCEEEEECTTSCCTTCEEEEEECSSS-EEEHHHHHHHHTTS
T ss_pred CCCCCEEEEEEcCCcccccCCCCCccCCCcceEEecCC-CccHHHHHHHHHhc
Confidence 6788999999999995 357876665 67888999888766
No 2
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A
Probab=97.97 E-value=2.8e-05 Score=70.08 Aligned_cols=109 Identities=15% Similarity=0.275 Sum_probs=72.0
Q ss_pred CCCcEEEEEeCCCCC--ccchh-hhhhhhHHHHHHhcCCCCCcEEEEecCCCCCCCCCCCCCeeecCCCccccccCCCce
Q psy17622 28 HSNNWAVLVDTSRFW--FNYRH-VANVLSIYRSVKRLGIPDSHIILMIADDMACNPRNPRPATVFNNANQHIDVYGEDVE 104 (194)
Q Consensus 28 ~~~~wavlvagS~~w--~NYRH-qadv~~~Y~~L~~~Gi~denIIlm~~DD~a~~p~Np~pG~i~~~~~~~~nlY~~~v~ 104 (194)
....||+||.-+.+= .+-+- ..|+-.+.+.|++.|+++++|+++.-++- .| +
T Consensus 90 ~grr~ALlIGIn~Y~~~~~L~g~vnDA~~m~~~L~~~GF~~~~i~~L~D~~~-----~p--~------------------ 144 (367)
T 4af8_A 90 GQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQKRGLPINEAVILVDEDN-----FP--G------------------ 144 (367)
T ss_dssp TCCEEEEEEECCCTTSTTCCSSHHHHHHHHHHHHHHTTCCCSEEEEEECCTT-----CT--T------------------
T ss_pred CCCeEEEEEEeCCCCCccCCCCHHHHHHHHHHHHHHcCCCchheEEeccccc-----cc--c------------------
Confidence 567888888777321 11111 35788899999999999999877643221 11 0
Q ss_pred eeccCCCCCHHHHHHHHccCccccCCCccEEEEEeCCCCC---------c---eeecCCC---CccCHHHHHHHH
Q psy17622 105 VDYRGYEVTVENFIRLLTATSVLTDEGSNILIYLTGHGGD---------G---FLKFQDS---EEVTSQELGDAL 164 (194)
Q Consensus 105 IDY~g~~Vt~~~fl~vL~Gk~l~s~~~dnVfvY~tgHGg~---------g---~i~f~d~---~~l~~~dL~~~l 164 (194)
.....|.+++++.|.--.-...++|.+||||+|||.. | .|.-.|. ..|..+||.+.|
T Consensus 145 ---~~~~pTr~nI~~aL~~L~~~a~pgD~l~fyFSGHG~q~~d~~de~dg~De~LvP~D~~~~g~I~ddeL~~lL 216 (367)
T 4af8_A 145 ---RTDQPTRDNIVRYMAWLVKDAKPGDVLFFHYSGHGTQCKSRGDSDEKYDQCIAPVDFQKSGCIVDDDIHKLL 216 (367)
T ss_dssp ---CCBCCCHHHHHHHHHHHHHTCCTTCEEEEEEESCEEEECCC-----CCEEEECCTTHHHHCCEEHHHHHHHH
T ss_pred ---cccCCCHHHHHHHHHHHHHhCCCCCEEEEEEcCCcCccCCCCCCCCCcceEEEeecCCcCCCccHHHHHHHH
Confidence 0245688899988854222567899999999999972 2 3554441 257778888773
No 3
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=97.94 E-value=1.6e-05 Score=71.14 Aligned_cols=109 Identities=17% Similarity=0.273 Sum_probs=71.9
Q ss_pred CCCcEEEEEeCCCC--Cccch-hhhhhhhHHHHHHh-cCCCCCcEEEEecCCCCCCCCCCCCCeeecCCCccccccCCCc
Q psy17622 28 HSNNWAVLVDTSRF--WFNYR-HVANVLSIYRSVKR-LGIPDSHIILMIADDMACNPRNPRPATVFNNANQHIDVYGEDV 103 (194)
Q Consensus 28 ~~~~wavlvagS~~--w~NYR-Hqadv~~~Y~~L~~-~Gi~denIIlm~~DD~a~~p~Np~pG~i~~~~~~~~nlY~~~v 103 (194)
.+.+||+||.-+.+ +.+-+ =..|+-.+...|++ .|+++++|+++. |+-. +|
T Consensus 51 ~grr~ALlIGIn~Y~~~~~L~g~vnDA~~m~~~L~~~~Gf~~~~I~lLt-d~~~----~~-------------------- 105 (350)
T 4f6o_A 51 TGRRKALIIGINYIGSKNQLRGCINDAHNIFNFLTNGYGYSSDDIVILT-DDQN----DL-------------------- 105 (350)
T ss_dssp CSCEEEEEEECCCTTSTTCCSSHHHHHHHHHHHHHHHSCCCGGGEEEEE-TTSS----CG--------------------
T ss_pred CCCEEEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCccceeeec-cccc----cc--------------------
Confidence 56789999887632 01111 12478889999986 599999986653 4320 10
Q ss_pred eeeccCCCCCHHHHHHHHccCccccCCCccEEEEEeCCCCC-------------ceeecCCC---CccCHHHHHHHHHH
Q psy17622 104 EVDYRGYEVTVENFIRLLTATSVLTDEGSNILIYLTGHGGD-------------GFLKFQDS---EEVTSQELGDALEQ 166 (194)
Q Consensus 104 ~IDY~g~~Vt~~~fl~vL~Gk~l~s~~~dnVfvY~tgHGg~-------------g~i~f~d~---~~l~~~dL~~~l~~ 166 (194)
....|.+++++.|.--.-...++|.+||||+|||.. ..|+-.|. ..|..+||.+.|..
T Consensus 106 -----~~~pTr~nI~~aL~~L~~~a~pgD~llfYFSGHG~q~~d~~gdE~dG~De~lvP~D~~~~g~I~ddeL~~~L~~ 179 (350)
T 4f6o_A 106 -----VRVPTRANMIRAMQWLVKDAQPNDSLFLHYSGHGGQTEDLDGDEEDGMDDVIYPVDFETQGPIIDDEMHDIMVK 179 (350)
T ss_dssp -----GGSCCHHHHHHHHHHHHTTCCTTCEEEEEEESCEEEC-----------CEEECCTTHHHHCCEEHHHHHHHHTT
T ss_pred -----ccCCCHHHHHHHHHHHHHhCCCCCEEEEEEcCCceeccCCCCCcccCCceEEEeccCCcCCcccHHHHHHHHHh
Confidence 124688899988863222456899999999999972 23664452 26888899887754
No 4
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*
Probab=90.67 E-value=0.4 Score=43.32 Aligned_cols=64 Identities=22% Similarity=0.261 Sum_probs=38.3
Q ss_pred CCHHHHHHHHccCccccCCCccEEEEEeCCCC----CceeecCCCC-------ccCHHHHHHHHHHHHHcCCcceeEE
Q psy17622 112 VTVENFIRLLTATSVLTDEGSNILIYLTGHGG----DGFLKFQDSE-------EVTSQELGDALEQMWQKRRYHEVRA 178 (194)
Q Consensus 112 Vt~~~fl~vL~Gk~l~s~~~dnVfvY~tgHGg----~g~i~f~d~~-------~l~~~dL~~~l~~M~~~~~Y~~lv~ 178 (194)
+|.+++.+.|.--.-...+.|.+++||+|||. .++|.=.|.. .+..++|.+.|+. .+-=.++++
T Consensus 49 lT~~eI~~aL~~f~~~~~~~D~~l~yfsGHG~~~~g~~yL~p~Da~~~~~~~~~isl~~Ll~~l~~---~~~K~kL~I 123 (390)
T 3uoa_B 49 LTEYEMRNAVDEFLLLLDKGVYGLLYYAGHGYENFGNSFMVPVDAPNPYRSENCLCVQNILKLMQE---KETGLNVFL 123 (390)
T ss_dssp CCHHHHHHHHHHHHHTCCTTCEEEEEEESCEEEETTEEEECCTTCCSSCCGGGSEEHHHHHHHHHH---TTCSEEEEE
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEEEEecCccccCCcceEEecCCCccccccceeeHHHHHHHHHh---cCCCceEEE
Confidence 36677777776411123578999999999994 4777644543 2455555555543 332245655
No 5
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=87.78 E-value=1 Score=36.14 Aligned_cols=55 Identities=11% Similarity=0.069 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHcc--CccccCCCccEEEEEeCCCCCceeecCCCC-----ccCHHHHHHHH
Q psy17622 110 YEVTVENFIRLLTA--TSVLTDEGSNILIYLTGHGGDGFLKFQDSE-----EVTSQELGDAL 164 (194)
Q Consensus 110 ~~Vt~~~fl~vL~G--k~l~s~~~dnVfvY~tgHGg~g~i~f~d~~-----~l~~~dL~~~l 164 (194)
.++|.+.+...|+- ++..-...|-+++||.+||..|.|.-.|.. .+.-++|...|
T Consensus 85 ~dlt~~em~~~l~~f~~~~d~~~~d~~v~~~lsHG~~g~i~g~D~~~~~~~~v~l~~I~~~f 146 (178)
T 2h54_A 85 KNLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNML 146 (178)
T ss_dssp ESCCHHHHHHHHHHHHTCGGGGGCSCEEEEEESCBCSSCEECTTCCSSSCCEECHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEecCCCCCeEEeecCCcccCcEEEHHHHHHHH
Confidence 45788888888864 222223456678888899999988867752 45555554444
No 6
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=77.60 E-value=2.7 Score=33.38 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHcc--CccccCCCccEEEEEeCCCCCceeecCCCCccCHHHHHHHHH
Q psy17622 110 YEVTVENFIRLLTA--TSVLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALE 165 (194)
Q Consensus 110 ~~Vt~~~fl~vL~G--k~l~s~~~dnVfvY~tgHGg~g~i~f~d~~~l~~~dL~~~l~ 165 (194)
.++|.+.+...|+- ++..-...|-.++++.+||..|.|.-.|++.+.-++|...|.
T Consensus 78 ~dlt~~em~~~l~~~~~~~dh~~~dc~vv~ilSHG~~g~i~g~D~~~v~l~~i~~~F~ 135 (167)
T 1pyo_A 78 CDQTAQEMQEKLQNFAQLPAHRVTDSCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFD 135 (167)
T ss_dssp ESCCHHHHHHHHHHHHTCGGGGTSSEEEEEEESCEETTEEECTTSCEEEHHHHHHHTS
T ss_pred eCCCHHHHHHHHHHhhhhhhccCCCEEEEEeCCCCCCCeEEEeCCCEEcHHHHHHHhc
Confidence 56788888888864 212223456788899999999999988876677666666553
No 7
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=69.71 E-value=3.3 Score=35.10 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHcc--CccccCCCccEEEEEeCCCCCceeecCCCCccCHHHHHHHH
Q psy17622 110 YEVTVENFIRLLTA--TSVLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDAL 164 (194)
Q Consensus 110 ~~Vt~~~fl~vL~G--k~l~s~~~dnVfvY~tgHGg~g~i~f~d~~~l~~~dL~~~l 164 (194)
.++|.+.+...|+- +. .-...|-+++++.+||..|.|.--|+..+.-++|.+.|
T Consensus 69 ~dlt~~em~~~l~~~~~~-~h~~~d~~v~~ilSHG~~g~i~g~D~~~v~l~~I~~~f 124 (271)
T 3h11_B 69 DDCTVEQIYEILKIYQLM-DHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQF 124 (271)
T ss_dssp ESCCHHHHHHHHHHHHHS-CCTTCSCEEEEEESCEETTEEECTTSCEEEHHHHHGGG
T ss_pred eCCCHHHHHHHHHHHHHh-cCCCCCEEEEEEEcCCcCCEEEecCCCeecHHHHHHHh
Confidence 46778888888864 11 22345667778888999999987776656656555544
No 8
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=67.79 E-value=3.3 Score=35.91 Aligned_cols=56 Identities=25% Similarity=0.390 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHcc--CccccCCCccEEEEEeCCCCC----ceeecCCCCccCHHHHHHHH
Q psy17622 109 GYEVTVENFIRLLTA--TSVLTDEGSNILIYLTGHGGD----GFLKFQDSEEVTSQELGDAL 164 (194)
Q Consensus 109 g~~Vt~~~fl~vL~G--k~l~s~~~dnVfvY~tgHGg~----g~i~f~d~~~l~~~dL~~~l 164 (194)
..++|.+.+.+.|+- ++..+...|-.++++.+||.. |+|.--|+..+.-++|.+.|
T Consensus 103 ~~dlt~~em~~~l~~f~~~~h~~~~D~~vv~ilSHG~~~~g~g~i~g~D~~~v~l~~I~~~f 164 (316)
T 2fp3_A 103 YGNVNQDQFFKLLTMVTSSSYVQNTECFVMVLMTHGNSVEGKEKVEFRDGSVVDMQKIKDHF 164 (316)
T ss_dssp ECSCCHHHHHHHHHHHHTSHHHHTCSCEEEEEESCEECCTTCCEEECTTSCEEEHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHHHHHhhcCCCCEEEEEEccCCCccCCCCEEEeecCcEEeHHHHHHHh
Confidence 467888888888864 333332456678888889999 99997787656666655544
No 9
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=66.51 E-value=4.5 Score=31.89 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHccC-ccccCCCccEEEEEeCCCCCceeecCCCCccCHHHHHHHH
Q psy17622 110 YEVTVENFIRLLTAT-SVLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDAL 164 (194)
Q Consensus 110 ~~Vt~~~fl~vL~Gk-~l~s~~~dnVfvY~tgHGg~g~i~f~d~~~l~~~dL~~~l 164 (194)
.++|.+.+...|+-- .-.-...|=+++++-.||..|.|.-.|+..+.-++|...|
T Consensus 75 ~dlt~~em~~~l~~~~~~dh~~~dc~vv~ilSHG~~g~i~g~D~~~v~i~~i~~~F 130 (164)
T 1qtn_A 75 DDCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQF 130 (164)
T ss_dssp ESCCHHHHHHHHHHHHHSCCTTCSCEEEEEESCEETTEEECTTSCEEEHHHHHGGG
T ss_pred cCCCHHHHHHHHHHHHHhhccCCCEEEEEeCCCCCCCEEEeeCCCEeeHHHHHHHh
Confidence 567888888887641 1112345678889999999999998887667767766555
No 10
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=65.66 E-value=4.3 Score=29.30 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHccCccccCCCccEEEEEeCCCCC
Q psy17622 110 YEVTVENFIRLLTATSVLTDEGSNILIYLTGHGGD 144 (194)
Q Consensus 110 ~~Vt~~~fl~vL~Gk~l~s~~~dnVfvY~tgHGg~ 144 (194)
.+.|...|+.+|+ |+|+-.+++.+|+|....-.|
T Consensus 28 ~~~tv~~~~~~lR-krL~l~~~~alFlyVnn~~~P 61 (91)
T 4gdk_A 28 RTRTIQGLIDFIK-KFLKLVASEQLFIYVNQSFAP 61 (91)
T ss_dssp TTCBHHHHHHHHH-HHTTCCSSSCCEEEETTTBCC
T ss_pred CCCCHHHHHHHHH-HHhCCCCCCeEEEEECCccCC
Confidence 5788999999998 888888999999998664443
No 11
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=63.14 E-value=6.6 Score=33.84 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHcc--CccccCCCccEEEEEeCCCCCceeecCCC-----CccCHHHHHHHH
Q psy17622 109 GYEVTVENFIRLLTA--TSVLTDEGSNILIYLTGHGGDGFLKFQDS-----EEVTSQELGDAL 164 (194)
Q Consensus 109 g~~Vt~~~fl~vL~G--k~l~s~~~dnVfvY~tgHGg~g~i~f~d~-----~~l~~~dL~~~l 164 (194)
..++|.+.+.+.|.- ++..-...|-+++++.+||..|.|.=-|. +.+.-++|.+.|
T Consensus 101 ~~dlt~~em~~~l~~f~~~~dh~~~d~~vv~~lsHG~~~~i~g~D~~~~~~~~v~l~~I~~~F 163 (302)
T 3e4c_A 101 KKNLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNML 163 (302)
T ss_dssp EESCCHHHHHHHHHHHHTCGGGGGCSCEEEEEEEEEETTEEECTTCCSSSCCEECHHHHHHHT
T ss_pred eeCCCHHHHHHHHHHHHhhhccCCCCEEEEEEeccCcCCeEEeecccccCCcEEEHHHHHHHH
Confidence 346888888888864 22332344667888889999998764443 345555554444
No 12
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=62.94 E-value=4.2 Score=34.43 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHcc--CccccCCCccEEEEEeCCCCCceeecCCCCccCHHHHHHHH
Q psy17622 110 YEVTVENFIRLLTA--TSVLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDAL 164 (194)
Q Consensus 110 ~~Vt~~~fl~vL~G--k~l~s~~~dnVfvY~tgHGg~g~i~f~d~~~l~~~dL~~~l 164 (194)
.++|.+.+.+.|+- ++ .-...|-.++++.+||..|+|.-.|+ .+.-++|.+.|
T Consensus 76 ~dlt~~em~~~l~~~~~~-dh~~~d~~v~~~lsHG~~~~i~~~D~-~v~l~~i~~~f 130 (272)
T 1m72_A 76 PNLKSEEINKFIQQTAEM-DHSDADCLLVAVLTHGELGMLYAKDT-HYKPDNLWYYF 130 (272)
T ss_dssp ESCCHHHHHHHHHHHHTS-CCTTEEEEEEEEESCEETTEEECSSS-EECTTHHHHTT
T ss_pred cCcCHHHHHHHHHHHHHh-hcCCCCEEEEEEcCCCCCCEEEecCC-cEEHHHHHHHh
Confidence 46777788887764 11 12344667889999999999997675 56656665544
No 13
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=61.84 E-value=4.7 Score=33.54 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHcc--CccccCCCccEEEEEeCCCCCceeecCCCCccCHHHHHHHH
Q psy17622 110 YEVTVENFIRLLTA--TSVLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDAL 164 (194)
Q Consensus 110 ~~Vt~~~fl~vL~G--k~l~s~~~dnVfvY~tgHGg~g~i~f~d~~~l~~~dL~~~l 164 (194)
.++|.+.+.+.|+- ++ .-...|-.++|+.+||..|.|.-.|+ .+.-++|.+.|
T Consensus 61 ~dlt~~em~~~l~~~~~~-~~~~~d~~v~~~lsHG~~g~i~~~D~-~v~l~~i~~~f 115 (250)
T 2j32_A 61 NDLTREEIVELMRDVSKE-DHSKRSSFVCVLLSHGEEGIIFGTNG-PVDLKKITNFF 115 (250)
T ss_dssp ESCCHHHHHHHHHHHHTS-CCTTEEEEEEEEESCEETTEEEETTE-EEEHHHHHHTT
T ss_pred eCCCHHHHHHHHHHHHHh-hccCCCEEEEEECCCCCCCeEEecCC-cEEHHHHHHHh
Confidence 45667777777754 22 12344668888999999999886665 55555544443
No 14
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=60.05 E-value=5.6 Score=33.50 Aligned_cols=54 Identities=13% Similarity=0.148 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHcc--CccccCCCccEEEEEeCCCCC-------ceeecCCCCccCHHHHHHHH
Q psy17622 110 YEVTVENFIRLLTA--TSVLTDEGSNILIYLTGHGGD-------GFLKFQDSEEVTSQELGDAL 164 (194)
Q Consensus 110 ~~Vt~~~fl~vL~G--k~l~s~~~dnVfvY~tgHGg~-------g~i~f~d~~~l~~~dL~~~l 164 (194)
.++|.+.+...|.- ++..+ ..|-.++++.+||.. |.|.-.|++.+.-++|.+.|
T Consensus 66 ~dlt~~em~~~l~~~~~~~h~-~~D~~vv~ilSHG~~~~~~~~~g~iy~~D~~~v~l~~i~~~f 128 (277)
T 1nw9_B 66 GDLTAKKMVLALLELARQDHG-ALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIF 128 (277)
T ss_dssp ESCCHHHHHHHHHHHHHSCCT-TCSEEEEEEEEEEECCCCSSSCCEEECTTSCEEEHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHhhcc-cCCeEEEEEeCCCCccccccCCCcEEecCCceeeHHHHHHHh
Confidence 56777888888864 22222 345667777789998 88876666556666655544
No 15
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=59.91 E-value=5.5 Score=33.80 Aligned_cols=53 Identities=11% Similarity=0.216 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHccCccc--cCCCccEEEEEeCCCCCceeecCCCCccCHHHHHHHH
Q psy17622 110 YEVTVENFIRLLTATSVL--TDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDAL 164 (194)
Q Consensus 110 ~~Vt~~~fl~vL~Gk~l~--s~~~dnVfvY~tgHGg~g~i~f~d~~~l~~~dL~~~l 164 (194)
.++|.+.+...|+- .-+ -...|-.++++.+||..|.|.--|+. +.-++|.+.|
T Consensus 66 ~dlt~~em~~~l~~-~~~~~h~~~d~~vv~ilSHG~~g~i~g~D~~-v~l~~I~~~f 120 (278)
T 3od5_A 66 NDLKAEELLLKIHE-VSTVSHADADCFVCVFLSHGEGNHIYAYDAK-IEIQTLTGLF 120 (278)
T ss_dssp ESCCHHHHHHHHHH-HHHSCCTTBSCEEEEEESCEETTEEECSSSE-EEHHHHHHTT
T ss_pred cCCCHHHHHHHHHH-HHhhcccCCCEEEEEEECCCCCCEEEEeCCe-EEHHHHHHHh
Confidence 46778888888864 111 13456778888889999999977764 6555555444
No 16
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=56.50 E-value=4.8 Score=34.80 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHcc--CccccCCCccEEEEEeCCCCCceeecCCCCccCHHHHHHHH
Q psy17622 110 YEVTVENFIRLLTA--TSVLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDAL 164 (194)
Q Consensus 110 ~~Vt~~~fl~vL~G--k~l~s~~~dnVfvY~tgHGg~g~i~f~d~~~l~~~dL~~~l 164 (194)
.++|.+.+.+.|+- ++.. ...|-.++|+.+||..|+|.-.|+ .+.-++|...|
T Consensus 114 ~dlt~~em~~~l~~~~~~~h-~~~d~~vv~ilsHG~~~~i~g~D~-~v~l~~I~~~f 168 (305)
T 1f1j_A 114 NDCSCAKMQDLLKKASEEDH-TNAACFACILLSHGEENVIYGKDG-VTPIKDLTAHF 168 (305)
T ss_dssp ESCCHHHHHHHHHHHHHSCG-GGEEEEEEEEESCEETTEEECSSS-EEEHHHHHHTT
T ss_pred cCcCHHHHHHHHHHHHHhhc-CCCCEEEEEEecCCCCCeEEecCC-eEEHHHHHHHh
Confidence 56777788777754 1111 234567799999999999986665 55555554433
No 17
>1y51_A Phosphocarrier protein HPR; bacillus stearothermophilus HPR F29W mutant, transport protein; 1.65A {Geobacillus stearothermophilus} PDB: 1y50_A 1y4y_A 2nzu_L* 1rzr_T* 2nzv_L* 2oen_L* 2fep_S* 3oqm_S* 3oqn_S* 3oqo_S*
Probab=53.43 E-value=14 Score=25.92 Aligned_cols=56 Identities=20% Similarity=0.396 Sum_probs=43.2
Q ss_pred ccCCCceeeccCCCCCHHHHHHHHccCccccCCCccEEEEEeCCCCCceeecCCCCccCHHHHHHHHHHHHHc
Q psy17622 98 VYGEDVEVDYRGYEVTVENFIRLLTATSVLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQK 170 (194)
Q Consensus 98 lY~~~v~IDY~g~~Vt~~~fl~vL~Gk~l~s~~~dnVfvY~tgHGg~g~i~f~d~~~l~~~dL~~~l~~M~~~ 170 (194)
-|.+++.|.+.+..|+.+.++.||+ |...+.+.|-|...|-. +++..++|..+.+.
T Consensus 28 ~f~s~I~i~~~~~~vdaKSim~lm~---L~~~~g~~i~i~~~G~D--------------e~~A~~~l~~l~~~ 83 (88)
T 1y51_A 28 KWNSEIQLEYNGKTVNLKSIMGVMS---LGIPKGATIKITAEGAD--------------AAEAMAALTDTLAK 83 (88)
T ss_dssp TSSSEEEEEETTEEEETTCHHHHHH---TCCCTTCEEEEEEESTT--------------HHHHHHHHHHHHHH
T ss_pred hCCCeEEEEECCEEEehHhHHHHHh---cCCCCCCEEEEEEeCCC--------------HHHHHHHHHHHHHh
Confidence 3667788888899999999999998 88888888888776622 45666677666654
No 18
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=52.31 E-value=7.1 Score=30.14 Aligned_cols=54 Identities=17% Similarity=0.288 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHccC-ccccCCCccEEEEEeCCCCCceeecCCCCccCHHHHHHHH
Q psy17622 110 YEVTVENFIRLLTAT-SVLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDAL 164 (194)
Q Consensus 110 ~~Vt~~~fl~vL~Gk-~l~s~~~dnVfvY~tgHGg~g~i~f~d~~~l~~~dL~~~l 164 (194)
.++|.+.+...|+-- .-.-...|-.++++.+||..|.|.-.|+ .+.-++|...|
T Consensus 61 ~dlt~~em~~~l~~~~~~dh~~~dc~vv~ilSHG~~g~i~g~D~-~~~l~~i~~~F 115 (146)
T 2dko_A 61 NDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNG-PVDLKKITNFF 115 (146)
T ss_dssp ESCCHHHHHHHHHHHHHSCCTTEEEEEEEEESCEETTEEEETTE-EEEHHHHHHTT
T ss_pred eCCCHHHHHHHHHHHHHhhcCCCCeEEEEeccCCCCCEEEEeCC-cEeHHHHHHHh
Confidence 356777777777530 1112344678899999999999998886 55555554433
No 19
>1kkl_H Phosphocarrier protein HPR; phosphorylation, protein kinase, bacteria, protein/protein interaction, transferase; 2.80A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1kkm_H*
Probab=52.15 E-value=14 Score=26.82 Aligned_cols=59 Identities=24% Similarity=0.469 Sum_probs=45.0
Q ss_pred ccCCCceeeccCCCCCHHHHHHHHccCccccCCCccEEEEEeCCCCCceeecCCCCccCHHHHHHHHHHHHHcCCc
Q psy17622 98 VYGEDVEVDYRGYEVTVENFIRLLTATSVLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRY 173 (194)
Q Consensus 98 lY~~~v~IDY~g~~Vt~~~fl~vL~Gk~l~s~~~dnVfvY~tgHGg~g~i~f~d~~~l~~~dL~~~l~~M~~~~~Y 173 (194)
-|.+++.|.+.+..|+.+.++.||+ |...+.|.|-|...|-. +++..++|..+.+...|
T Consensus 40 ~f~s~I~i~~~~~~vdAKSIm~lms---Lg~~~G~~i~i~a~G~D--------------ee~Al~~l~~li~~~~f 98 (100)
T 1kkl_H 40 KYDADVNLEYNGKTVNLKSIMGVMS---LGIAKGAEITISASGAD--------------ENDALNALEETMKSERL 98 (100)
T ss_dssp TCSSEEEEEETTEEEETTCHHHHHH---TCCCTTCEEEEEEESTT--------------HHHHHHHHHHHHHHTTC
T ss_pred hCCCeEEEEECCEEEecHhHHHHhc---CCCCCCCEEEEEEeCCC--------------HHHHHHHHHHHHHhcCC
Confidence 3667788888899999999999998 88888888888776521 56677777777665333
No 20
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=50.72 E-value=9.2 Score=32.51 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHcc--CccccCCCccEEEEEeCCCCCceeecCCCCccCHHHHHHHH
Q psy17622 110 YEVTVENFIRLLTA--TSVLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDAL 164 (194)
Q Consensus 110 ~~Vt~~~fl~vL~G--k~l~s~~~dnVfvY~tgHGg~g~i~f~d~~~l~~~dL~~~l 164 (194)
.++|.+.+.+.|.- ++ .-...|-+++++.+||..|.|.--|+ .+.-++|...|
T Consensus 89 ~dlt~~em~~~l~~f~~~-dh~~~d~~vv~ilSHG~~g~i~g~D~-~v~l~~I~~~f 143 (277)
T 4ehd_A 89 NDLTREEIVELMRDVSKE-DHSKRSSFVCVLLSHGEEGIIFGTNG-PVDLKKITNFF 143 (277)
T ss_dssp ESCCHHHHHHHHHHHHTS-CCTTEEEEEEEEESCEETTEEEETTE-EEEHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHhh-cccCCCEEEEEEEcCCCCCEEEEeCC-cEeHHHHHHHh
Confidence 45777777777764 11 22345667788899999999986665 45555544433
No 21
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=49.54 E-value=14 Score=31.27 Aligned_cols=55 Identities=9% Similarity=0.135 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHcc--CccccCCCccEEEEEeCCCCCceeecCCCC--ccCHHHHHHHH
Q psy17622 110 YEVTVENFIRLLTA--TSVLTDEGSNILIYLTGHGGDGFLKFQDSE--EVTSQELGDAL 164 (194)
Q Consensus 110 ~~Vt~~~fl~vL~G--k~l~s~~~dnVfvY~tgHGg~g~i~f~d~~--~l~~~dL~~~l 164 (194)
.++|.+.+...|.- +...-...|-.++++.+||..|.|.=-|+. .+.-++|.+.|
T Consensus 74 ~dlt~~em~~~l~~~~~~~dh~~~d~~v~~ilSHG~~g~i~g~D~~~~~v~l~~i~~~f 132 (272)
T 3h11_A 74 LHLSMHGISQILGQFACMPEHRDYDSFVCVLVSRGGSQSVYGVDQTHSGLPLHHIRRMF 132 (272)
T ss_dssp ESCBHHHHHHHHHHHHTCGGGGGCSEEEEEEEEEEETTEECBTSCCSSCEEHHHHHHHH
T ss_pred eCCCHHHHHHHHHHHHhccccCCCCEEEEEEEcCCCCCeEEEEcCCcceEeHHHHHHHh
Confidence 46777777777764 222334567888999999999999866764 35555555544
No 22
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=48.46 E-value=7.6 Score=33.67 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHcc--CccccCCCccEEEEEeCCCCCceeecCCCCccCHHHHHHHH
Q psy17622 110 YEVTVENFIRLLTA--TSVLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDAL 164 (194)
Q Consensus 110 ~~Vt~~~fl~vL~G--k~l~s~~~dnVfvY~tgHGg~g~i~f~d~~~l~~~dL~~~l 164 (194)
.++|.+.+...|+- ++. -...|-.++++.+||..|+|.-.|+ .+.-++|.+.|
T Consensus 104 ~dlt~~em~~~l~~f~~~d-h~~~D~~vv~ilSHG~~g~i~g~D~-~v~l~~I~~~f 158 (310)
T 2nn3_C 104 PNLKSEEINKFIQQTAEMD-HSDADCLLVAVLTAGELGMLYAKDT-HYKPDNLWYYF 158 (310)
T ss_dssp ESCCHHHHHHHHHHHHSSC-GGGBSCEEEEEEEEEETTEEECSSC-EECTHHHHGGG
T ss_pred cCCCHHHHHHHHHHHHHhc-cCCCCEEEEEEeCCCCCCEEEecCC-cEEHHHHHHHh
Confidence 46788888877754 211 1234567888888999999996675 56656555544
No 23
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=45.64 E-value=12 Score=28.08 Aligned_cols=30 Identities=17% Similarity=0.433 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHccCccccCCCccEEEEEe
Q psy17622 109 GYEVTVENFIRLLTATSVLTDEGSNILIYLT 139 (194)
Q Consensus 109 g~~Vt~~~fl~vL~Gk~l~s~~~dnVfvY~t 139 (194)
..++|...|..+|+ |+|.-.+++.+|+|..
T Consensus 54 p~~~tv~qf~~~iR-krl~l~~~~alFl~Vn 83 (118)
T 3rui_B 54 PADLTVGQFVYVIR-KRIMLPPEKAIFIFVN 83 (118)
T ss_dssp ETTSBHHHHHHHHH-HHTTCCTTCCEEEEBT
T ss_pred CCCCCHHHHHHHHH-HHhCcCCCccEEEEEC
Confidence 46889999999998 7888889999999974
No 24
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=44.60 E-value=15 Score=28.09 Aligned_cols=32 Identities=13% Similarity=0.401 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHHccCccccCCCccEEEEEeCC
Q psy17622 109 GYEVTVENFIRLLTATSVLTDEGSNILIYLTGH 141 (194)
Q Consensus 109 g~~Vt~~~fl~vL~Gk~l~s~~~dnVfvY~tgH 141 (194)
..+.|...|..+|+ |+|+-.+++.+|+.|.+.
T Consensus 60 p~~~tv~qf~~~iR-krL~l~~~~alFl~~vn~ 91 (130)
T 2zjd_A 60 PDHVNMSELIKIIR-RRLQLNANQAFFLLVNGH 91 (130)
T ss_dssp ETTCBHHHHHHHHH-HHHTCCTTCCEEEEETTT
T ss_pred CCCCcHHHHHHHHH-HHhCCCCCceEEEEEECC
Confidence 35788999999999 889999999999966654
No 25
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=43.55 E-value=13 Score=28.00 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHccCccccCCCccEEEEEe
Q psy17622 109 GYEVTVENFIRLLTATSVLTDEGSNILIYLT 139 (194)
Q Consensus 109 g~~Vt~~~fl~vL~Gk~l~s~~~dnVfvY~t 139 (194)
..+.|...|..+|+ ++|.-.+++-+|+|..
T Consensus 55 p~~~tv~qf~~~iR-krl~l~~~~alFl~Vn 84 (119)
T 3h9d_A 55 PSDLTVGQFVSVLR-KRVQLEAESALFVYTN 84 (119)
T ss_dssp ETTCBHHHHHHHHH-HHHTCCTTSCCEEEET
T ss_pred CCCCCHHHHHHHHH-HHhCCCccceEEEEEC
Confidence 46889999999998 7888888999999985
No 26
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=43.30 E-value=12 Score=31.39 Aligned_cols=54 Identities=17% Similarity=0.330 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHcc-CccccCCCccEEEEEeCCCCCceeecCCCCccCHHHHHHHHHHH
Q psy17622 110 YEVTVENFIRLLTA-TSVLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQM 167 (194)
Q Consensus 110 ~~Vt~~~fl~vL~G-k~l~s~~~dnVfvY~tgHGg~g~i~f~d~~~l~~~dL~~~l~~M 167 (194)
.++|.+.+...|.- .+-+-...|-.++++.+||..|.|.=-|+ . -+|.+.++.|
T Consensus 64 ~dlt~~em~~~l~~~~~~~h~~~d~~v~~~lsHG~~g~i~~~D~-~---v~l~~i~~~f 118 (259)
T 3sir_A 64 KDCRYKDILRTIEYSASQNHSDSDCILVAILSHGEMGYIYAKDT-Q---YKLDNIWSFF 118 (259)
T ss_dssp EECSHHHHHHHHHHHHTSCCTTEEEEEEEEEECTTCCCCCCTTH-H---HHHHHTTGGG
T ss_pred eCCCHHHHHHHHHHHHHhhccCCCEEEEEEecCCCCCeEEeCCC-c---EEHHHHHHHh
Confidence 35677777777754 01122345678888999999998863332 2 3444444444
No 27
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=42.57 E-value=16 Score=29.33 Aligned_cols=53 Identities=11% Similarity=0.211 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHccCcc--ccCCCccEEEEEeCCCCCceeecCCCCccCHHHHHHHH
Q psy17622 110 YEVTVENFIRLLTATSV--LTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDAL 164 (194)
Q Consensus 110 ~~Vt~~~fl~vL~Gk~l--~s~~~dnVfvY~tgHGg~g~i~f~d~~~l~~~dL~~~l 164 (194)
.++|.+.+...|+- .- .-...|-+++.+..||..|.|.--|+. +.-++|.+.|
T Consensus 89 ~dlt~~em~~~l~~-~~~~dh~~~dc~vvvilSHG~~g~I~g~D~~-v~l~~I~~~F 143 (179)
T 3p45_A 89 NDLKAEELLLKIHE-VSTVSHADADCFVCVFLSHGEGNHIYAYDAK-IEIQTLTGLF 143 (179)
T ss_dssp ESCCHHHHHHHHHH-HHTSCCTTBSCEEEEEESCEETTEEECSSSE-EEHHHHHGGG
T ss_pred eCCCHHHHHHHHHH-HhhhhcCCCCEEEEEEeccCCCCEEEEECCE-EEHHHHHHhc
Confidence 46777777777753 11 112457889999999999999988875 6555555444
No 28
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding, nucleus, phosphorylation, chromatin regulator, UBL conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo sapiens}
Probab=42.26 E-value=27 Score=27.84 Aligned_cols=95 Identities=15% Similarity=0.208 Sum_probs=59.2
Q ss_pred cCCCCCcEEEEecC--CCCCCCCCCCCCeeecCCCccccccCCCceeeccCCCCCHHHHHHHHcc---Cc--------cc
Q psy17622 61 LGIPDSHIILMIAD--DMACNPRNPRPATVFNNANQHIDVYGEDVEVDYRGYEVTVENFIRLLTA---TS--------VL 127 (194)
Q Consensus 61 ~Gi~denIIlm~~D--D~a~~p~Np~pG~i~~~~~~~~nlY~~~v~IDY~g~~Vt~~~fl~vL~G---k~--------l~ 127 (194)
-|.++...|.+.|+ +-.+.|+.|.||+-|.- ....-|=.++-.-..+|+.|.- ++ ..
T Consensus 44 pGy~~~gtI~I~Y~ip~GiQg~~HPnPGk~y~G----------~~R~AYLPdn~eGr~VL~LL~~AF~~rLiFTVG~S~T 113 (159)
T 3pg6_A 44 PGYESFGTIVITYSMKAGIQTEEHPNPGKRYPG----------IQRTAYLPDNKEGRKVLKLLYRAFDQKLIFTVGYSRV 113 (159)
T ss_dssp TTCTTSEEEEEEEEECCEECCTTSSSTTCEECC----------EEEEEEEEESHHHHHHHHHHHHHHHTTCSEEEEEETT
T ss_pred CCCCCCCeEEEEEEcCCccccCcCCCCCCccCC----------CCeEEECCCCHHHHHHHHHHHHHHHcCCEEEEecccc
Confidence 36777777777775 44588999999998872 2334454555455677777764 22 22
Q ss_pred cCCCccEEEE------EeCCCCCceeecCCCCccCHHHHHHHHHHHHHcC
Q psy17622 128 TDEGSNILIY------LTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKR 171 (194)
Q Consensus 128 s~~~dnVfvY------~tgHGg~g~i~f~d~~~l~~~dL~~~l~~M~~~~ 171 (194)
++. +++.+- =+=+||+.-..+||..+ |...++++.+++
T Consensus 114 tG~-~d~V~WN~IhHKT~~~GG~~~~GYPDp~Y-----L~rV~~EL~akG 157 (159)
T 3pg6_A 114 LGV-SDVITWNDIHHKTSRFGGPEMYGYPDPSY-----LKRVKEELKAKG 157 (159)
T ss_dssp TTE-EEEEEECSCCCCCCSSSCGGGTCSCCTTH-----HHHHHHHHHHTT
T ss_pred CCC-CCEEEECCccccCCCCCCCCcCCCCCcHH-----HHHHHHHHHHhC
Confidence 333 344332 23478888888999655 556666666654
No 29
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=40.21 E-value=14 Score=27.63 Aligned_cols=29 Identities=14% Similarity=0.439 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHccCccccCCCccEEEEEe
Q psy17622 110 YEVTVENFIRLLTATSVLTDEGSNILIYLT 139 (194)
Q Consensus 110 ~~Vt~~~fl~vL~Gk~l~s~~~dnVfvY~t 139 (194)
.+.|...|+.+|+ |+|+-.+++.+|+|..
T Consensus 53 ~~~tv~~f~~~iR-k~l~l~~~~alfl~vn 81 (117)
T 1eo6_A 53 SDITVAQFMWIIR-KRIQLPSEKAIFLFVD 81 (117)
T ss_dssp TTSBHHHHHHHHH-HHHTCCTTSCCEEEBT
T ss_pred CCCCHHHHHHhhH-HhhcCCCCCcEEEEEC
Confidence 3779999999998 7888899999999764
No 30
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=38.61 E-value=16 Score=26.85 Aligned_cols=29 Identities=14% Similarity=0.343 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHccCccccCCCccEEEEEe
Q psy17622 110 YEVTVENFIRLLTATSVLTDEGSNILIYLT 139 (194)
Q Consensus 110 ~~Vt~~~fl~vL~Gk~l~s~~~dnVfvY~t 139 (194)
.+.|...|+.+|+ ++|+-.+++.+|+|..
T Consensus 52 ~~~tv~~~~~~iR-k~l~l~~~~alfl~vn 80 (110)
T 2r2q_A 52 SDLTVGQFYFLIR-KRIHLRPEDALFFFVN 80 (110)
T ss_dssp TTCBHHHHHHHHH-HHTTCCTTSCCEEEBT
T ss_pred CCCcHHHHHHHHH-HHhcCCCCCcEEEEEC
Confidence 3779999999998 7888899999999663
No 31
>3lub_A Putative creatinine amidohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Bacteroides fragilis}
Probab=38.05 E-value=24 Score=29.45 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=27.8
Q ss_pred eeccC-CCCCHHHHHHHHcc--Ccc-ccCCCccEEEEEeCCCCCc
Q psy17622 105 VDYRG-YEVTVENFIRLLTA--TSV-LTDEGSNILIYLTGHGGDG 145 (194)
Q Consensus 105 IDY~g-~~Vt~~~fl~vL~G--k~l-~s~~~dnVfvY~tgHGg~g 145 (194)
.+|.| -.++++.|+++|+. +.| +.|-+ -+|+++||||-.
T Consensus 82 ~~fPGTisl~~~tl~~~l~di~~sl~~~G~r--rlvivNgHGGN~ 124 (254)
T 3lub_A 82 RELPFCIHTRYATQQAILEDIVSSLHVQGFR--KLLILSGHGGNN 124 (254)
T ss_dssp TTSTTCCBCCHHHHHHHHHHHHHHHHHTTCC--EEEEEESCTTCC
T ss_pred cCcCCeEEeCHHHHHHHHHHHHHHHHHcCCC--EEEEEeCCchHH
Confidence 34556 57899999999975 222 23444 789999999953
No 32
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=37.02 E-value=15 Score=29.26 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHcc--CccccCCCccEEEEEeCCCCCceeecCCCCccCHHHHHH
Q psy17622 110 YEVTVENFIRLLTA--TSVLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGD 162 (194)
Q Consensus 110 ~~Vt~~~fl~vL~G--k~l~s~~~dnVfvY~tgHGg~g~i~f~d~~~l~~~dL~~ 162 (194)
.++|.+.+...|+- +. .-...|=.++.+-.||..|.|.-.|+ .+.-++|..
T Consensus 89 ~dlt~~em~~~l~~~s~~-dh~~~dc~vvvilSHG~~g~I~g~D~-~~~i~~I~~ 141 (173)
T 2ql9_A 89 NDCSCAKMQDLLKKASEE-DHTNAACFACILLSHGEENVIYGKDG-VTPIKDLTA 141 (173)
T ss_dssp ESCCHHHHHHHHHHHHTS-CCTTEEEEEEEEESCEETTEEEETTE-EEEHHHHHG
T ss_pred eCCCHHHHHHHHHHHHHh-hccCCCeEEEeecCCCCCCEEEEcCC-cEEHHHHHH
Confidence 46777777777753 11 11234567889999999999998886 455444443
No 33
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=36.56 E-value=18 Score=27.62 Aligned_cols=30 Identities=13% Similarity=0.314 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHccCccccCCCccEEEEEe
Q psy17622 109 GYEVTVENFIRLLTATSVLTDEGSNILIYLT 139 (194)
Q Consensus 109 g~~Vt~~~fl~vL~Gk~l~s~~~dnVfvY~t 139 (194)
..++|...|+.+|+ ++|.-.+++-+|+|..
T Consensus 60 p~~~tv~qf~~~IR-krl~L~~~~alFl~Vn 89 (125)
T 3m95_A 60 PSDLTVGQFYFLIR-KRIHLRPEDALFFFVN 89 (125)
T ss_dssp ETTSBHHHHHHHHH-HHTTCCTTSCCEEEBT
T ss_pred CCCCEeeeehhhhH-hhcCCCccccEEEEEC
Confidence 46889999999998 7888889999999874
No 34
>1pch_A Phosphocarrier protein; phosphotransferase; 1.80A {Mycoplasma capricolum} SCOP: d.94.1.1
Probab=34.82 E-value=34 Score=23.98 Aligned_cols=56 Identities=11% Similarity=0.248 Sum_probs=42.2
Q ss_pred ccCCCceeeccCCCCCHHHHHHHHccCccccCCCccEEEEEeCCCCCceeecCCCCccCHHHHHHHHHHHHHc
Q psy17622 98 VYGEDVEVDYRGYEVTVENFIRLLTATSVLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQK 170 (194)
Q Consensus 98 lY~~~v~IDY~g~~Vt~~~fl~vL~Gk~l~s~~~dnVfvY~tgHGg~g~i~f~d~~~l~~~dL~~~l~~M~~~ 170 (194)
-|.+++.|.+.+..|+.+.++.||+ |...+.|.|-|...|-. +++..++|..+.+.
T Consensus 27 ~f~s~I~i~~~~~~vdaKSim~lms---Lg~~~G~~i~i~a~G~D--------------e~~Al~~l~~l~~~ 82 (88)
T 1pch_A 27 KFSSNITIIANEKQGNLKSIMNVMA---MAIKTGTEITIQADGND--------------ADQAIQAIKQTMID 82 (88)
T ss_dssp TCSSEEEEEETTEEEETTCHHHHHH---HCCCTTCEEEEEEESTT--------------HHHHHHHHHHHHHH
T ss_pred hCCCeEEEEECCEEEehHhHHHHHh---cCCCCCCEEEEEEeCCC--------------HHHHHHHHHHHHHh
Confidence 3667788888889999999999998 88888888888776622 45666666665543
No 35
>1v7z_A Creatininase, creatinine amidohydrolase; Mn-activated creatininase, substrate complex; 1.60A {Pseudomonas SP} SCOP: c.125.1.1 PDB: 1j2u_A 1j2t_A 3a6d_A 3a6j_A 3a6k_A 3a6l_A 3a6g_A 3a6f_A 3a6e_A 3a6h_A 1q3k_A
Probab=33.48 E-value=19 Score=29.99 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=27.4
Q ss_pred eeccC-CCCCHHHHHHHHcc--Cc-cccCCCccEEEEEeCCCCC
Q psy17622 105 VDYRG-YEVTVENFIRLLTA--TS-VLTDEGSNILIYLTGHGGD 144 (194)
Q Consensus 105 IDY~g-~~Vt~~~fl~vL~G--k~-l~s~~~dnVfvY~tgHGg~ 144 (194)
.+|.| -.++++.|+++|+. +. .+.|-+ -+|+++||||-
T Consensus 82 ~~fPGTisl~~~tl~~~l~di~~sl~~~Gfr--rivivNgHGGN 123 (260)
T 1v7z_A 82 NHFPGTTSLDGATLTGTVQDIIRELARHGAR--RLVLMNGHYEN 123 (260)
T ss_dssp TTSSSCBCBCHHHHHHHHHHHHHHHHHHTCC--EEEEEECSGGG
T ss_pred cCCCceEEeCHHHHHHHHHHHHHHHHHcCCC--EEEEEcCCCCc
Confidence 45666 57899999999985 22 233443 78999999985
No 36
>3m7v_A Phosphopentomutase; structural genomics, nysgrc, cytoplasm, isomerase, manganese binding, PSI-2, protein structure initiative; 2.00A {Streptococcus mutans}
Probab=32.64 E-value=32 Score=28.32 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=15.9
Q ss_pred CccccCCCccEEEEEeCCCCC
Q psy17622 124 TSVLTDEGSNILIYLTGHGGD 144 (194)
Q Consensus 124 k~l~s~~~dnVfvY~tgHGg~ 144 (194)
+.|+.-++++|+||.+|||.+
T Consensus 325 ~~l~~L~entliiftsDnG~~ 345 (413)
T 3m7v_A 325 EIIAAMKVDDLLLITADHGND 345 (413)
T ss_dssp HHHHTCCTTEEEEEECSSBCC
T ss_pred HHHHhcCCCCEEEEEccCCCC
Confidence 444445578999999999964
No 37
>1ptf_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 1.60A {Enterococcus faecalis} SCOP: d.94.1.1 PDB: 1qfr_A 1fu0_A*
Probab=32.48 E-value=14 Score=25.94 Aligned_cols=55 Identities=22% Similarity=0.471 Sum_probs=42.0
Q ss_pred ccCCCceeeccCCCCCHHHHHHHHccCccccCCCccEEEEEeCCCCCceeecCCCCccCHHHHHHHHHHHHH
Q psy17622 98 VYGEDVEVDYRGYEVTVENFIRLLTATSVLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQ 169 (194)
Q Consensus 98 lY~~~v~IDY~g~~Vt~~~fl~vL~Gk~l~s~~~dnVfvY~tgHGg~g~i~f~d~~~l~~~dL~~~l~~M~~ 169 (194)
-|.+++.|.+.+..|+.+.++.||+ |...+.+.|-|...| +| +++..++|..+.+
T Consensus 28 ~f~s~I~i~~~~~~vnaKSim~lm~---L~~~~g~~i~i~~~G---------~D-----e~~A~~~l~~l~~ 82 (88)
T 1ptf_A 28 KFNSDINLEYKGKSVNLKSIMGVMS---LGVGQGSDVTITVDG---------AD-----EAEGMAAIVETLQ 82 (88)
T ss_dssp TCSSEEEEEETTEEEETTCHHHHHH---HCCCTTCEEEEEEES---------TT-----HHHHHHHHHHHHH
T ss_pred hCCCeEEEEECCEEEehHhHHHHHh---cCCCCCCEEEEEEeC---------CC-----HHHHHHHHHHHHH
Confidence 3667788888899999999999998 888888888887776 22 3455566666555
No 38
>3ccd_A Phosphocarrier protein HPR; succinimide, isoaspartate, protein damage, autophosphatase, transferase; 1.00A {Escherichia coli} PDB: 1cm3_A 1cm2_A 1ggr_B 1hdn_A 1j6t_B 1pfh_A* 1poh_A 1vrc_C 2jel_P 2xdf_C 3eza_B 3ezb_B 3eze_B 1opd_A
Probab=31.71 E-value=15 Score=25.64 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=33.5
Q ss_pred ccCCCceeeccCCCCCHHHHHHHHccCccccCCCccEEEEEeC
Q psy17622 98 VYGEDVEVDYRGYEVTVENFIRLLTATSVLTDEGSNILIYLTG 140 (194)
Q Consensus 98 lY~~~v~IDY~g~~Vt~~~fl~vL~Gk~l~s~~~dnVfvY~tg 140 (194)
-|.+++.|.+.|..|+.+.++.||+ |...+.|.|-|...|
T Consensus 28 ~f~s~I~i~~~~~~vnaKSim~lm~---Lg~~~G~~i~i~~~G 67 (85)
T 3ccd_A 28 GFTSEITVTSNGKSASAKSLFKLQT---LGLTQGTVVTISAEG 67 (85)
T ss_dssp TSCSEEEEEETTEEEETTCHHHHTT---SCCCTTCEEEEEEES
T ss_pred hCCCeEEEEECCEEEehHhHHHHHh---CCCCCCCEEEEEEeC
Confidence 3667788888899999999999997 778888888887766
No 39
>1sph_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 2.00A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1jem_A* 2hid_A 2hpr_A
Probab=30.76 E-value=16 Score=25.65 Aligned_cols=55 Identities=25% Similarity=0.508 Sum_probs=41.3
Q ss_pred ccCCCceeeccCCCCCHHHHHHHHccCccccCCCccEEEEEeCCCCCceeecCCCCccCHHHHHHHHHHHHH
Q psy17622 98 VYGEDVEVDYRGYEVTVENFIRLLTATSVLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQ 169 (194)
Q Consensus 98 lY~~~v~IDY~g~~Vt~~~fl~vL~Gk~l~s~~~dnVfvY~tgHGg~g~i~f~d~~~l~~~dL~~~l~~M~~ 169 (194)
-|.+++.|.+.+..|+.+.++.||+ |...+.+.|-|...|- | +++..++|..+.+
T Consensus 28 ~f~s~I~i~~~~~~vnaKSim~lm~---L~~~~g~~i~i~~~G~---------D-----e~~A~~~l~~l~~ 82 (88)
T 1sph_A 28 KYDADVNLEYNGKTVNLKDIMGVMS---LGIAKGAEITISASGA---------D-----ENDALNALEETMK 82 (88)
T ss_dssp TSSSEEEEEETTEEEETTCHHHHHH---HCCCTTCEEEEEEEST---------T-----HHHHHHHHHHHHH
T ss_pred hCCCeEEEEECCEEEehHhHHHHHh---cCCCCCCEEEEEEeCC---------C-----HHHHHHHHHHHHH
Confidence 3667788888899999999999998 8888888887777662 2 3455566666555
No 40
>1ka5_A Phosphocarrier protein HPR; open faced beta-sandwich, structural proteomics in europe, spine, structural genomics, ligand transport; NMR {Staphylococcus aureus} SCOP: d.94.1.1 PDB: 1qr5_A 1txe_A
Probab=29.37 E-value=16 Score=25.57 Aligned_cols=40 Identities=20% Similarity=0.572 Sum_probs=33.6
Q ss_pred ccCCCceeeccCCCCCHHHHHHHHccCccccCCCccEEEEEeC
Q psy17622 98 VYGEDVEVDYRGYEVTVENFIRLLTATSVLTDEGSNILIYLTG 140 (194)
Q Consensus 98 lY~~~v~IDY~g~~Vt~~~fl~vL~Gk~l~s~~~dnVfvY~tg 140 (194)
-|.+++.|.+.+..|+.+.++.||+ |...+.+.|-|...|
T Consensus 28 ~f~s~I~i~~~~~~vnaKSim~lm~---Lg~~~G~~i~i~a~G 67 (88)
T 1ka5_A 28 KFDSDIQLEYNGKKVNLKSIMGVMS---LGVGKDAEITIYADG 67 (88)
T ss_dssp HHSSEEEEEETTEEEETTCHHHHHT---TTCCTTCEEEEEEES
T ss_pred hCCCeEEEEECCEEEehHhHHHHHh---cCCCCCCEEEEEEeC
Confidence 3667788888899999999999997 888888888777766
No 41
>3no4_A Creatininase, creatinine amidohydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.00A {Nostoc punctiforme pcc 73102}
Probab=29.24 E-value=33 Score=29.03 Aligned_cols=38 Identities=18% Similarity=0.479 Sum_probs=27.3
Q ss_pred eeccC-CCCCHHHHHHHHcc--Cc-cccCCCccEEEEEeCCCCC
Q psy17622 105 VDYRG-YEVTVENFIRLLTA--TS-VLTDEGSNILIYLTGHGGD 144 (194)
Q Consensus 105 IDY~g-~~Vt~~~fl~vL~G--k~-l~s~~~dnVfvY~tgHGg~ 144 (194)
.+|.| -.++++.|+++|+. +. .+.|-+ -+|+++||||-
T Consensus 91 ~~fpGTisl~~~t~~~~l~di~~sl~~~G~~--~iv~vNgHGGN 132 (267)
T 3no4_A 91 TAFPGTISLRPSTLIQVVRDYVTCLAKAGFS--KFYFINGHGGN 132 (267)
T ss_dssp TTSTTCBCCCHHHHHHHHHHHHHHHHHHTCC--EEEEEECCTTH
T ss_pred cCCCCeEEeCHHHHHHHHHHHHHHHHHcCCC--EEEEEECCcCc
Confidence 34555 57899999999976 22 233444 78999999985
No 42
>3le1_A Phosphotransferase system, HPR-related proteins; HPR PTS phosphotransfer, kinase; 1.51A {Thermoanaerobacter tengcongensis} SCOP: d.94.1.0 PDB: 3le3_A 3lnw_A 3lfg_A 3le5_A
Probab=28.33 E-value=18 Score=25.38 Aligned_cols=57 Identities=12% Similarity=0.272 Sum_probs=42.5
Q ss_pred ccCCCceeeccCCCCCHHHHHHHHccCccccCCCccEEEEEeCCCCCceeecCCCCccCHHHHHHHHHHHHHcC
Q psy17622 98 VYGEDVEVDYRGYEVTVENFIRLLTATSVLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKR 171 (194)
Q Consensus 98 lY~~~v~IDY~g~~Vt~~~fl~vL~Gk~l~s~~~dnVfvY~tgHGg~g~i~f~d~~~l~~~dL~~~l~~M~~~~ 171 (194)
-|.+.+.|.+.+..|+.+.++.||+ |...+.|.|-|...|- .+++..++|..+.+.+
T Consensus 28 ~f~s~I~i~~~~~~vnaKSim~lm~---Lg~~~G~~i~i~a~G~--------------De~~A~~~l~~l~~~~ 84 (88)
T 3le1_A 28 KFSSQIWVEKDNKKVNAKSIMGIMS---LGVSQGNVVKLSAEGD--------------DEEEAIKALVDLIESK 84 (88)
T ss_dssp TSSSEEEEEETTEEEETTCHHHHHH---HCCCTTCEEEEEEEST--------------THHHHHHHHHHHHHTT
T ss_pred hCCCeEEEEECCEEEehHhHHHHHh---cCCCCCCEEEEEEeCC--------------CHHHHHHHHHHHHHhc
Confidence 3667788888889999999999998 7888888887777553 2455666666665543
No 43
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genom structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli}
Probab=27.18 E-value=93 Score=26.02 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhcCCCCCcEEEEecCCCC---------CCCCCCCCCeeecCCCccccccCCCceee---ccCCCCCHHHH
Q psy17622 50 NVLSIYRSVKRLGIPDSHIILMIADDMA---------CNPRNPRPATVFNNANQHIDVYGEDVEVD---YRGYEVTVENF 117 (194)
Q Consensus 50 dv~~~Y~~L~~~Gi~denIIlm~~DD~a---------~~p~Np~pG~i~~~~~~~~nlY~~~v~ID---Y~g~~Vt~~~f 117 (194)
|+...-++|++.|++.+.||++-..-+. .-|..+.|-.+..-|.--..+-..+..+. |...--+.+.+
T Consensus 129 Na~~s~~ll~~~g~~~~~iiLVTs~~Hm~RA~~~f~~~~~~~~~p~~~~~~pv~~p~~~~~~~~~~~~~~~~~~w~~~r~ 208 (266)
T 3ca8_A 129 NARFSIALLNQAVERVHTAIVVQDPTMQRRTMATFRRMTGDNPDAPRWLSYPGFVPQLGNNADSVIFINQLQGLWPVERY 208 (266)
T ss_dssp HHHHHHHHHHTCSSCCSCEEEECCTTTHHHHHHHHHHHHCCCTTSCSEEECCSSCCCEEEETTEEEESSCCTTCCCHHHH
T ss_pred HHHHHHHHHHhcCCCCCeEEEECChhHHHHHHHHHHHhCCCCCCCcceeeccccccchhccCCccchhhhhhhhhHHHHH
Q ss_pred HHHHcc--CccccCCCccEEEEEeCCC--CCceeecCCCCccCHHHHHHHHHHHHHcCCcceeE
Q psy17622 118 IRLLTA--TSVLTDEGSNILIYLTGHG--GDGFLKFQDSEEVTSQELGDALEQMWQKRRYHEVR 177 (194)
Q Consensus 118 l~vL~G--k~l~s~~~dnVfvY~tgHG--g~g~i~f~d~~~l~~~dL~~~l~~M~~~~~Y~~lv 177 (194)
++.|.| .+|...++ |-| |-||+. +.==.+|+..+.+.+.+.+..++++
T Consensus 209 i~~~lGel~Rl~~~~~--------gYgp~~~gf~~----~~~iP~~V~~A~~~l~~~~~~~~~~ 260 (266)
T 3ca8_A 209 LSLLTGELPRLRDDSD--------GYGPRGRDFIV----HVDFPAEVIHAWQTLKHDAVLIEAM 260 (266)
T ss_dssp HHHHHHHHHHHSCSTT--------SSSTTTTCSSC----CCCCCHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccc--------ccCccCCCccc----cCcCCHHHHHHHHHHHHhhhHHHHH
No 44
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=26.16 E-value=38 Score=24.26 Aligned_cols=31 Identities=10% Similarity=0.155 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHccCccccCCCccEEEEEeCCCCC
Q psy17622 110 YEVTVENFIRLLTATSVLTDEGSNILIYLTGHGGD 144 (194)
Q Consensus 110 ~~Vt~~~fl~vL~Gk~l~s~~~dnVfvY~tgHGg~ 144 (194)
.+.|...|+.+|+ |+|+- +.||+|....-.|
T Consensus 31 ~~~t~~~~v~~lR-krL~l---~alFlyVNn~f~P 61 (91)
T 3w1s_C 31 MSQSFAMVILFLK-RRLKM---DHVYCYINNSFAP 61 (91)
T ss_dssp TTSBHHHHHHHHH-HHHTC---SCCEEEETTTBCC
T ss_pred CCCCHHHHHHHHH-HhhCC---ceEEEEECCccCC
Confidence 5788999999999 66665 6799999765443
No 45
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=25.40 E-value=1.3e+02 Score=20.23 Aligned_cols=67 Identities=9% Similarity=-0.031 Sum_probs=36.9
Q ss_pred ceeeccCCCCCHHHHHHHHccCc--------cccCC-CccEEEEEeCCCCCceeecCCCCccCHHHHHHHHHHHHHcCCc
Q psy17622 103 VEVDYRGYEVTVENFIRLLTATS--------VLTDE-GSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRY 173 (194)
Q Consensus 103 v~IDY~g~~Vt~~~fl~vL~Gk~--------l~s~~-~dnVfvY~tgHGg~g~i~f~d~~~l~~~dL~~~l~~M~~~~~Y 173 (194)
+.+|+.-.+.+.-.+++-|+... +-|+. +... .-....|+++||. ..+..++|..+|+...+.+.+
T Consensus 51 vi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~----KP~~~~~l~~~i~~~l~~~~~ 125 (133)
T 3nhm_A 51 LISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTE-GPADQPVPDAYLV----KPVKPPVLIAQLHALLARAEA 125 (133)
T ss_dssp EEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC------TTSCCCSEEEE----SSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhH-HHHhhcCCceEEe----ccCCHHHHHHHHHHHHhhhcc
Confidence 44565555566667777665310 11111 1112 3344556666766 257899999999988777665
Q ss_pred c
Q psy17622 174 H 174 (194)
Q Consensus 174 ~ 174 (194)
.
T Consensus 126 ~ 126 (133)
T 3nhm_A 126 E 126 (133)
T ss_dssp -
T ss_pred c
Confidence 4
No 46
>2w5q_A Processed glycerol phosphate lipoteichoic acid synthase; transmembrane, cell WALL biogenesis/degradation, LTAS, membrane, secreted; 1.20A {Staphylococcus aureus} PDB: 2w5s_A* 2w5t_A* 2w5r_A*
Probab=24.35 E-value=33 Score=29.82 Aligned_cols=14 Identities=14% Similarity=0.347 Sum_probs=12.2
Q ss_pred CCccEEEEEeCCCC
Q psy17622 130 EGSNILIYLTGHGG 143 (194)
Q Consensus 130 ~~dnVfvY~tgHGg 143 (194)
.++.|+|+++|||+
T Consensus 248 ~dnTiIVf~sDHG~ 261 (424)
T 2w5q_A 248 YDNSVIMIYGDHYG 261 (424)
T ss_dssp STTSEEEEEECSCS
T ss_pred cCCeEEEEECCCCc
Confidence 46789999999996
No 47
>3ihs_A Phosphocarrier protein HPR; dimerization domain SWAP beta strand, IDP01131, structural genomics; HET: MSE; 1.15A {Bacillus anthracis} PDB: 1zvv_W* 1mo1_A 1mu4_A 2rlz_A 2ak7_A* 1k1c_A
Probab=22.90 E-value=27 Score=25.67 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=33.3
Q ss_pred ccCCCceeeccCCCCCHHHHHHHHccCccccCCCccEEEEEeC
Q psy17622 98 VYGEDVEVDYRGYEVTVENFIRLLTATSVLTDEGSNILIYLTG 140 (194)
Q Consensus 98 lY~~~v~IDY~g~~Vt~~~fl~vL~Gk~l~s~~~dnVfvY~tg 140 (194)
-|.+.+.|.+.+..|+.+.++.||+ |...+.|.|-|...|
T Consensus 52 ~f~s~I~i~~~~~~vdAKSil~lms---Lg~~~G~~i~i~aeG 91 (106)
T 3ihs_A 52 RFHADIFIEKDGKTVNAKSIMGIMS---LAIGTGSMITITTEG 91 (106)
T ss_dssp TSSSEEEEEETTEEEETTCHHHHHH---TCCCTTCEEEEEEES
T ss_pred hCCCeEEEEECCEEEehHhHHHHHh---cCCCCCCEEEEEEEC
Confidence 4667788888889999999999998 778888888777755
No 48
>2w8d_A Processed glycerol phosphate lipoteichoic acid SY; transferase, phosphatase, cell membrane, transmembrane, LTA, membrane, secreted, cell WALL; HET: TPO PG4; 2.35A {Bacillus subtilis}
Probab=22.88 E-value=37 Score=29.72 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=12.1
Q ss_pred CCccEEEEEeCCCC
Q psy17622 130 EGSNILIYLTGHGG 143 (194)
Q Consensus 130 ~~dnVfvY~tgHGg 143 (194)
.++.|+|+++|||+
T Consensus 248 ~dnTiIv~tsDHG~ 261 (436)
T 2w8d_A 248 YDKSIIVMYGDHYG 261 (436)
T ss_dssp STTEEEEEEECSCS
T ss_pred cCCeEEEEECCCCc
Confidence 46789999999996
No 49
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=22.16 E-value=41 Score=25.91 Aligned_cols=35 Identities=11% Similarity=0.268 Sum_probs=25.6
Q ss_pred CCceeecCCCCccCHHHHHHHHHHHHHcCCcceeE
Q psy17622 143 GDGFLKFQDSEEVTSQELGDALEQMWQKRRYHEVR 177 (194)
Q Consensus 143 g~g~i~f~d~~~l~~~dL~~~l~~M~~~~~Y~~lv 177 (194)
.+-.+.|+.++.-..+.|.++|++|.+.+.|.++.
T Consensus 196 ~~~~~~~~k~~~~l~~~in~~l~~l~~~G~~~~i~ 230 (243)
T 4gvo_A 196 AKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLS 230 (243)
T ss_dssp CEECCEECTTCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 34456666555445678999999999998887753
No 50
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=22.09 E-value=1.9e+02 Score=19.52 Aligned_cols=65 Identities=20% Similarity=0.219 Sum_probs=36.6
Q ss_pred ceeeccCCCCCHHHHHHHHccCccccC-CCccEEEEEeCCCC------------CceeecCCCCccCHHHHHHHHHHHHH
Q psy17622 103 VEVDYRGYEVTVENFIRLLTATSVLTD-EGSNILIYLTGHGG------------DGFLKFQDSEEVTSQELGDALEQMWQ 169 (194)
Q Consensus 103 v~IDY~g~~Vt~~~fl~vL~Gk~l~s~-~~dnVfvY~tgHGg------------~g~i~f~d~~~l~~~dL~~~l~~M~~ 169 (194)
+.+|+.-.+.+.-.+++-|+. ..... ...-.+|.+|+++. .+||.= .+..++|..+++...+
T Consensus 54 vllD~~lp~~~g~~~~~~l~~-~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~K----P~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 54 VFMDVCMPGVENYQIALRIHE-KFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLK----PVSLDNIRDVLSDLLE 128 (136)
T ss_dssp EEEECCSSTTTTTHHHHHHHH-HHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEES----SCCHHHHHHHHHHHHS
T ss_pred EEEeCCCCCCcHHHHHHHHHH-hhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEEC----CCCHHHHHHHHHHHhc
Confidence 445555444444455655542 11111 11225667787654 456552 5788999999998876
Q ss_pred cCC
Q psy17622 170 KRR 172 (194)
Q Consensus 170 ~~~ 172 (194)
.+.
T Consensus 129 ~~~ 131 (136)
T 1dcf_A 129 PRV 131 (136)
T ss_dssp CCC
T ss_pred hhh
Confidence 544
No 51
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} SCOP: a.211.1.2
Probab=21.95 E-value=36 Score=30.00 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=20.2
Q ss_pred CCCCccchhhhhhhh-HHHHHHhcCC
Q psy17622 39 SRFWFNYRHVANVLS-IYRSVKRLGI 63 (194)
Q Consensus 39 S~~w~NYRHqadv~~-~Y~~L~~~Gi 63 (194)
.+-|.|.+|.+||++ +|..|.+.|+
T Consensus 78 ~npYHN~~HA~dV~q~~~~ll~~~~l 103 (365)
T 1taz_A 78 KNPYHNQIHAADVTQTVHCFLLRTGM 103 (365)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHHHSG
T ss_pred CCCCcCHHHHHHHHHHHHHHHHhhhH
Confidence 357999999999998 6777777764
Done!