RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17622
(194 letters)
>gnl|CDD|227531 COG5206, GPI8, Glycosylphosphatidylinositol transamidase (GPIT),
subunit GPI8 [Posttranslational modification, protein
turnover, chaperones].
Length = 382
Score = 231 bits (591), Expect = 1e-75
Identities = 104/162 (64%), Positives = 125/162 (77%), Gaps = 9/162 (5%)
Query: 24 ANAKHSNNWAVLVDTSRFWFNYRHVANVLSIYRSVKRLGIPDSHIILMIADDMACNPRNP 83
A ++NNWAVL+ TSRFWFNYRH+ANVL YR VKRLGIPDS IILM DD ACN RN
Sbjct: 22 AARTNTNNWAVLLSTSRFWFNYRHMANVLVFYRVVKRLGIPDSQIILMSYDDQACNSRNL 81
Query: 84 RPATVFNNANQHIDVYGEDVEVDYRGYEVTVENFIRLLTATS---------VLTDEGSNI 134
P +VFNN+++ D+YGED E+DY GYEVTVE FIRLLTA S +LTDE SNI
Sbjct: 82 FPGSVFNNSDRAGDLYGEDSEIDYSGYEVTVEVFIRLLTARSGENHPKSKRLLTDESSNI 141
Query: 135 LIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRYHEV 176
IY+TGHGGD FLKFQD+EE+TS++L DA+ Q+ K+RY+E+
Sbjct: 142 FIYMTGHGGDAFLKFQDAEEMTSEDLADAISQLAAKKRYNEI 183
>gnl|CDD|216627 pfam01650, Peptidase_C13, Peptidase C13 family. Members of this
family are asparaginyl peptidases. The blood fluke
parasite Schistosoma mansoni has at least five Clan CA
cysteine peptidases in its digestive tract including
cathepsins B (2 isoforms), C, F and L. All have been
recombinantly expressed as active enzymes, albeit in
various stages of activation. In addition, a Clan CD
peptidase, termed asparaginyl endopeptidase or
'legumain' has been identified. This has formerly been
characterized as a 'haemoglobinase', but this term is
probably incorrect. Two cDNAs have been described for
Schistosoma mansoni legumain; one encodes an active
enzyme whereas the active site cysteine residue encoded
by the second cDNA is substituted by an asparagine
residue. Both forms have been recombinantly expressed.
Length = 258
Score = 125 bits (315), Expect = 1e-35
Identities = 63/163 (38%), Positives = 92/163 (56%), Gaps = 15/163 (9%)
Query: 31 NWAVLVDTSRFWFNYRHVANVLSIYRSVKRLGIPDSHIILMIADDMACNPRNPRPATVFN 90
WAVLV S ++NYRH A+V Y+ +K+ GI D +II+M+ DD+A NP NP P +FN
Sbjct: 1 LWAVLVAGSNGYYNYRHQADVCHAYQLLKKFGIKDENIIVMMYDDIANNPENPFPGKIFN 60
Query: 91 NANQHIDVYGEDVEVDYRGYEVTVENFIRLLTA-TSVLTDEGS--------NILIYLTGH 141
N DVY + V +DY G +VT NF+ +L S L G N+ IY T H
Sbjct: 61 KPNGT-DVY-KGVPIDYTGNDVTPRNFLAVLLGDKSALKGSGKVLKSGPNDNVFIYFTDH 118
Query: 142 GGDGFLKFQDSEEVTSQELGDALEQMWQKRRYHE----VRACN 180
G G L F + + + +++L +AL++M + +Y + V AC
Sbjct: 119 GAPGVLGFPELDYLYAKDLAEALKKMHARGKYKKLVFYVEACE 161
>gnl|CDD|173792 cd04843, Peptidases_S8_11, Peptidase S8 family domain,
uncharacterized subfamily 11. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 277
Score = 30.7 bits (70), Expect = 0.37
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 65 DSHIILMIADDMACNPRNPRPATVFNNANQHIDVY--GEDV 103
DS I M+ A + F+N +DVY GE+V
Sbjct: 176 DSGAI-MVG---AGSSTTGHTRLAFSNYGSRVDVYGWGENV 212
>gnl|CDD|224371 COG1454, EutG, Alcohol dehydrogenase, class IV [Energy production
and conversion].
Length = 377
Score = 29.5 bits (67), Expect = 1.2
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 52 LSIYRSVKRLGIPDSHIILMIADDMA--CNPRNPRPATV 88
L I + ++ LG+ + I + D +A C NPRP T
Sbjct: 328 LGIPKRLRDLGVKEEDIDKLAEDALADPCTATNPRPPTR 366
>gnl|CDD|216047 pfam00656, Peptidase_C14, Caspase domain.
Length = 228
Score = 28.4 bits (64), Expect = 2.0
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 107 YRGYEV------TVENFIRLLTATSVLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQEL 160
G+EV T E R L + D G + ++ +GHG G + D V L
Sbjct: 33 RLGFEVEVFDDLTAEEIRRALREFAARADPGDSFVVVYSGHGVQGEVYGGDGYLVPVDAL 92
>gnl|CDD|173900 cd00674, LysRS_core_class_I, catalytic core domain of class I
lysyl tRNA synthetase. Class I lysyl tRNA synthetase
(LysRS) catalytic core domain. This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in
ATP binding. The class I LysRS is found only in archaea
and some bacteria and has evolved separately from class
II LysRS, as the two do not share structural or
sequence similarity.
Length = 353
Score = 28.4 bits (64), Expect = 2.1
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 44 NYRHVANVLSIYRSVKRLGIPDSHIILMIADDM 76
N+R V + R+++ LG I DD
Sbjct: 37 NFREVITADLVARALRDLGFEVRLIY--SWDDY 67
>gnl|CDD|219850 pfam08455, SNF2_assoc, Bacterial SNF2 helicase associated. This
domain is found in bacterial proteins of the SWF/SNF/SWI
helicase family to the N-terminus of the SNF2 family
N-terminal domain (pfam00176) and together with the
Helicase conserved C-terminal domain (pfam00271). The
function of the domain is not clear.
Length = 376
Score = 28.4 bits (64), Expect = 2.7
Identities = 6/34 (17%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 142 GGDGFLKFQ-DSEEVTSQELGDALEQMWQKRRYH 174
L+ D + + +E+ + L + +K++Y+
Sbjct: 261 SEGNLLEISFDIDGIDEEEVDNILRALREKKKYY 294
>gnl|CDD|217581 pfam03471, CorC_HlyC, Transporter associated domain. This small
domain is found in a family of proteins with the
pfam01595 domain and two CBS domains with this domain
found at the C-terminus of the proteins, the domain is
also found at the C terminus of some Na+/H+ antiporters.
This domain is also found in CorC that is involved in
Magnesium and cobalt efflux. The function of this domain
is uncertain but might be involved in modulating
transport of ion substrates.
Length = 80
Score = 26.3 bits (59), Expect = 3.7
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 94 QHIDVYGEDVEVDYRGYEVTVE 115
I G+ V V+ G TV
Sbjct: 44 GRIPEVGDKVTVELGGLRFTVL 65
>gnl|CDD|240492 cd13734, SPRY_PRY_C-I, PRY/SPRY domain in tripartite
motif-containing proteins 1, 9, 18, 36, 46, 67,76
(TRIM1, TRIM9, TRIM18, TRIM36, TRIM46, TRIM67, TRIM76).
This domain, consisting of the distinct N-terminal PRY
subdomain followed by the SPRY subdomain, is found at
the C-terminus of several Class I TRIM proteins,
including TRIM1, TRIM9, TRIM18, TRIM36, TRIM46, TRIM67
and TRIM76. TRIM1 (also known as MID2) and its close
homolog, TRIM18 (also known as MID1), both contain a
B30.2-like domain at their C-terminus and a single
fibronectin type III (FN3) motif between it and their
N-terminal RBCC domain. Their coiled-coil motifs mediate
both homo- and heterodimerization, a prerequisite for
association of the rapamycin-sensitive PP2A regulatory
subunit Alpha 4 with microtubules. Mutations in TRIM18
have shown to cause Opitz syndrome, a disorder causing
congenital anomalies such as cleft lip and palate as
well as heart defects. TRIM9 is expressed mainly in the
cerebral cortex, and functions as an E3 ubiquitin
ligase. Its immunoreactivity is severely decreased in
affected brain areas in Parkinson's disease and dementia
with Lewy bodies, possibly playing an important role in
the regulation of neuronal function and participating in
pathological process of Lewy body disease through its
ligase. TRIM36 interacts with centromere protein-H, one
of the kinetochore proteins and possibly associates with
chromosome segregation; an excess of TRIM36 may cause
chromosomal instability. TRIM46 has not yet been
characterized. TRIM67 negatively regulates Ras activity
via degradation of 80K-H, leading to neural
differentiation, including neuritogenesis. TRIM76 (also
known as cardiomyopathy-associated protein 5 or CMYA5)
is a muscle-specific member of the TRIM superfamily, but
lacks the RING domain. It is possibly involved in
protein kinase A signaling as well as vesicular
trafficking. It has also been implicated in Duchenne
muscular dystrophy and cardiac disease.
Length = 169
Score = 27.2 bits (61), Expect = 3.7
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 7 WAVLVDTS---RFWFNYRHVANAKH----SNNWAVLVDTSRFWFNYRHVANVLSIYRSVK 59
W V VD S R Y+ V + S +W + +R+ + L++ +
Sbjct: 59 WEVSVDRSTSYRVGVAYKSVPRDEDLGKNSTSWCLRRTNNRYSARHDGKVVDLTVTPHPR 118
Query: 60 RLGI 63
R+G+
Sbjct: 119 RIGV 122
>gnl|CDD|220523 pfam10020, DUF2262, Uncharacterized protein conserved in bacteria
(DUF2262). This domain, found in various hypothetical
bacterial proteins, has no known function.
Length = 144
Score = 27.2 bits (61), Expect = 3.9
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 101 EDVEVDYRGYEVTVENFIRLLTATSVLTDEGSNILIYLTGHGGDGF 146
ED + E+T E F + ++ TS+ E + Y GD F
Sbjct: 81 EDDDEAEDDPEITEEEFAKRISLTSITIYEDGDFEAYF--DDGDLF 124
>gnl|CDD|227236 COG4899, COG4899, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 166
Score = 26.9 bits (59), Expect = 5.3
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 74 DDMACNPRNPRPATVFNNANQHIDVYGEDVEVDYRGY-EVTVENFIRLL 121
DD C NP+P F +N I + G ++DY G+ EV +F+ L
Sbjct: 36 DDDMCQILNPKPKRHFIRSNLPIPIDGGKKKLDYGGWVEVEHSDFMTYL 84
>gnl|CDD|131882 TIGR02835, spore_sigmaE, RNA polymerase sigma-E factor. Members of
this family comprise the Firmicutes lineage endospore
formation-specific sigma factor SigE, also called
SpoIIGB and sigma-29. As characterized in Bacillus
subtilis, this protein is synthesized as a precursor,
specifically in the mother cell compartment, and must
cleaved by the SpoIIGA protein to be made active
[Transcription, Transcription factors, Cellular
processes, Sporulation and germination].
Length = 234
Score = 26.7 bits (59), Expect = 7.1
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 13/70 (18%)
Query: 97 DVYGEDVEVDYRGYEVTVENFIRLLTATSVLTDEGSNILIYLTGHGGDGFLKF--QDSEE 154
DV G D ++ Y+ E V+ + L A + L D I+ L+F E
Sbjct: 150 DVLGTDSDIVYKYLEEEVDREL-LRKALAKLNDREKKIM----------ELRFGLVGGTE 198
Query: 155 VTSQELGDAL 164
T +E+ D L
Sbjct: 199 KTQKEVADML 208
>gnl|CDD|224471 COG1554, ATH1, Trehalose and maltose hydrolases (possible
phosphorylases) [Carbohydrate transport and metabolism].
Length = 772
Score = 26.5 bits (59), Expect = 9.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 32 WAVLVDTSRFWFNYRHVANVLSIY 55
VL++T+RFW + H ++ Y
Sbjct: 461 LEVLLETARFWASRVHFSDRNGRY 484
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.418
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,038,036
Number of extensions: 922280
Number of successful extensions: 876
Number of sequences better than 10.0: 1
Number of HSP's gapped: 873
Number of HSP's successfully gapped: 26
Length of query: 194
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 102
Effective length of database: 6,857,034
Effective search space: 699417468
Effective search space used: 699417468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)